AlfalfaGEDB | MS.gene95305

M. sativa cultivar XinJiangDaYe / MS.gene95305

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95305.t1	XP_013444686.1	99.2	118	1	0	1	118	1	118	9.00E-61	244.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95305.t1	Q9FMP0	67.8	115	36	1	1	115	1	114	4.0e-41	170.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95305.t1	A0A072TNC0	99.2	118	1	0	1	118	1	118	6.5e-61	244.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04919	MS.gene95305	0.8044	2.20E-49	-1.69E-46
MS.gene04920	MS.gene95305	0.808528	2.96E-50	-1.69E-46
MS.gene049283	MS.gene95305	0.833905	4.08E-56	-1.69E-46
MS.gene049499	MS.gene95305	0.801524	8.65E-49	-1.69E-46
MS.gene049983	MS.gene95305	0.814507	1.49E-51	-1.69E-46
MS.gene050114	MS.gene95305	0.81202	5.23E-51	-1.69E-46
MS.gene050654	MS.gene95305	0.83249	9.18E-56	-1.69E-46
MS.gene050941	MS.gene95305	0.822336	2.50E-53	-1.69E-46
MS.gene051003	MS.gene95305	0.818336	2.07E-52	-1.69E-46
MS.gene051343	MS.gene95305	0.812686	3.74E-51	-1.69E-46

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95305.t1	MTR_8g028015	99.535	215	1	0	1	215	1	215	3.56e-151	424
MS.gene95305.t1	MTR_8g079890	52.344	128	59	2	1	127	1	127	1.09e-38	136

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95305.t1	AT5G12230	62.727	220	75	3	1	215	1	218	3.08e-55	180
MS.gene95305.t1	AT5G19480	60.000	215	77	3	1	214	1	207	2.89e-53	174
MS.gene95305.t1	AT5G19480	60.000	215	77	3	1	214	1	207	2.89e-53	174
MS.gene95305.t1	AT5G19480	60.000	215	77	3	1	214	1	207	2.89e-53	174
MS.gene95305.t1	AT5G19480	60.000	215	77	3	1	214	1	207	2.89e-53	174

Showing 1 to 5 of 5 entries

Previous1Next

Find 75 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGATGGCATGCAAT+TGG	0.425102	8.1:+73814154	MS.gene95305:CDS
AAACCTCCACCTCCTGACAC+TGG	0.605460	8.1:+73816769	MS.gene95305:CDS
AAAGGAATACCAACAATTGC+AGG	0.443447	8.1:+73814458	MS.gene95305:CDS
AACAACATGCACAACGAAGT+AGG	0.631543	8.1:-73818576	None:intergenic
AATTCACCTGATGGTGGAAA+AGG	0.493016	8.1:+73817451	MS.gene95305:CDS
AATTGAATCATGGATCCTGA+AGG	0.619824	8.1:+73813533	None:intergenic
ACACCAGTGTCAGGAGGTGG+AGG	0.591353	8.1:-73816772	None:intergenic
ACAGAAGTAAGAAAAGGAGA+TGG	0.606393	8.1:+73814143	MS.gene95305:CDS
ACAGCACCTGTCAACTCCCT+CGG	0.592323	8.1:-73814011	None:intergenic
ACAGGGATAAGGACAAGGAC+AGG	0.491569	8.1:+73814531	MS.gene95305:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGAAGTACATAGTCA+TGG	-	chr8.1:73815559-73815578	None:intergenic	30.0%
AAGATAAATATGAAGGATGG+GGG	-	chr8.1:73818169-73818188	None:intergenic	30.0%
ACAAAAAGAAAGACAAAAGC+GGG	+	chr8.1:73814609-73814628	MS.gene95305:CDS	30.0%
ACGTGCAAAATTTATGCATT+TGG	-	chr8.1:73818248-73818267	None:intergenic	30.0%
AGTACTTGTAAACTCTGTTT+AGG	+	chr8.1:73814825-73814844	MS.gene95305:intron	30.0%
AGTTCACTAGCAATTCTATA+AGG	-	chr8.1:73817527-73817546	None:intergenic	30.0%
ATAGAATTGCTAGTGAACTT+TGG	+	chr8.1:73817528-73817547	MS.gene95305:intron	30.0%
ATCCGTCGAAGTTAAATAAA+TGG	-	chr8.1:73817758-73817777	None:intergenic	30.0%
ATTAAAATGATCTCCTTCAC+TGG	-	chr8.1:73814853-73814872	None:intergenic	30.0%
ATTCCCTTTGATTACATAAC+AGG	-	chr8.1:73816306-73816325	None:intergenic	30.0%

Showing 1 to 10 of 361 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	73813542	73818695	73813542	ID=MS.gene95305
chr8.1	mRNA	73813542	73818695	73813542	ID=MS.gene95305.t1;Parent=MS.gene95305
chr8.1	exon	73813542	73813572	73813542	ID=MS.gene95305.t1.exon1;Parent=MS.gene95305.t1
chr8.1	CDS	73813542	73813572	73813542	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73814009	73814298	73814009	ID=MS.gene95305.t1.exon2;Parent=MS.gene95305.t1
chr8.1	CDS	73814009	73814298	73814009	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73814452	73814676	73814452	ID=MS.gene95305.t1.exon3;Parent=MS.gene95305.t1
chr8.1	CDS	73814452	73814676	73814452	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73815160	73815219	73815160	ID=MS.gene95305.t1.exon4;Parent=MS.gene95305.t1
chr8.1	CDS	73815160	73815219	73815160	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73815364	73815402	73815364	ID=MS.gene95305.t1.exon5;Parent=MS.gene95305.t1
chr8.1	CDS	73815364	73815402	73815364	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73816454	73816493	73816454	ID=MS.gene95305.t1.exon6;Parent=MS.gene95305.t1
chr8.1	CDS	73816454	73816493	73816454	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73816608	73816665	73816608	ID=MS.gene95305.t1.exon7;Parent=MS.gene95305.t1
chr8.1	CDS	73816608	73816665	73816608	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73816744	73816794	73816744	ID=MS.gene95305.t1.exon8;Parent=MS.gene95305.t1
chr8.1	CDS	73816744	73816794	73816744	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73817411	73817479	73817411	ID=MS.gene95305.t1.exon9;Parent=MS.gene95305.t1
chr8.1	CDS	73817411	73817479	73817411	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1
chr8.1	exon	73818512	73818695	73818512	ID=MS.gene95305.t1.exon10;Parent=MS.gene95305.t1
chr8.1	CDS	73818512	73818695	73818512	ID=cds.MS.gene95305.t1;Parent=MS.gene95305.t1

Gene Sequence

>MS.gene95305

ATGGATCCTGAAGGAAAAAAGTTTGGAGGAGGTAAAAGTTTGTTACGATAGTGCTTTATGTTGTATACCTAATTCTATAAAATCTTTATTTGATGTCTCTGTATAGTATTATTGTATATACAAGTCCCGATTTCATATGTTTATGGCACGAACTGTGCTTGTTATCTAATTGACAATACTTGGTTAAATTTTTAATCAGTTATTCATGATCTTAGTTTTTTATTTGCCCTTCTGGCAGATTTGAAACTTTGTCAATTATCACCCATTAATTTTTTTGGAATTGAATGGAAAAGATTAAATTCTCTTAGCATCTTTTGAAGATTGAGTCATAGATAAAAATTACTGTGTAATCACCCCTTTTTAAAGTTTGCACAATACGTTTTCTTGTGTATATTTTATATTTCGTTTACACTTACTCATCAAAGAAAAACCGTGTTTTTTGACATTCTGTATTTTTGAATCCTCAGGACCGAGGGAGTTGACAGGTGCTGTGGATCTCATAAGTCATTTCAAATTAATACCGCACTATGAATTTTTCTGCAAGAGGCCGCTTCCTGTGTCAATCGCGGACACACACTACCTGCACAGTGTAGTAGGAGACACAGAAGTAAGAAAAGGAGATGGCATGCAATTGGACGAACTCATTCAGAATACATCTTTCTCAAGAGAGACAAGTGCTCGGATACAGCCTTTCGACTTGGATATACTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCCATCGATTTGCCTGCTGTAAGAAATTGTGTAGTGATTTTGATCATACTTTGTTTTTAATTCTTGCTGAAATCATTCGGCATGCTATCTTAGTTTTTTTTTTAACAAAGTTTGATGATGTGTTCTTTGTGGACTTATATCTTTTGATTGTTCCTTGATTTTCCCTAATAGGCGGAGAAAGGAATACCAACAATTGCAGGAAAATCAAAAAGTGAGAAAGACAAAGAGAAGAAGCATAAGAAGCACAAAGACAGGGATAAGGACAAGGACAGGGAGCATAAGAAGCACAAACATCGTCACAAGGACAGAAGCAAAGACAAAGACAAGGACAAAAAGAAAGACAAAAGCGGGCATCGTGATTCCAGTGCTGATCACTCAAAGAAACATCATGAAAAGGTTGAATTTTTTTAGTTTTCTGCATCTATATTCTTCAGATTGAGAGAAAGTGTGTTCTGAAAATCCTGTCATGCAATAACATTGCAAATTTACTTGACTGTTTTTTTATGATTTTTAATTAGTGTCGTGCTGATACTGTTAACTCTCAAGTACTTGTAAACTCTGTTTAGGATCCAGTGAAGGAGATCATTTTAATTTGATATCAGTGATGTTAAATAGTGGCGCTATAGCGTTATTGCATAATGGAATTTGAACAAATCACTATTGTTCCGCGATACCTATTTAGCACAAAATATTATGAAATAACAGTTATAGCGGCTCTATAGCACTATTGCGTTGTGGAATTTGAACAAACATCTATTTTCCACGATCCGCCATTGACAACACTGTTCGATATCAACATTTGCTCTACATACTATTTGGACATGTTACAGACATTTAGTTCTATTAATTAACCTTTTACTTTTGCTCAATATCTTTCAGAAGAGGAAGCATGACGGAGATGATGATGCTAATGATGTGCACAAACACAAAAAGAGTAAGGTAATAAAGTAGTAAGAAGCTTAGTCTTGTGATGAGTTTTTTCTGTCTTTTCTGTCCCAGCACATTTCTGGTGTATATTTCTTAGTGGTTGACAGTGTCTAATCTTCAATGAACTTCTGTGCTCAATTTCTTAATTTTTTCCAGCACAAGAGCTCAAGAATTGATGAGTTGGGGGCAATAAAGGTTGCTGGCTGAAATAGTTATGTACTTAGTTCACTCTCTTTTCCTCAATTGGTTGTTGTCATTTGTATGTGAAGGAGACTTTTGCCTGACATTTTCAGATTTCTTGAGGTACATCATTATATCTGCCACAATTTTTAATTTTTTCTCTGATTTCCATGACTATGTACTTCATTCTTTTTTGGAGTTTTAACAGGGAACCCTTAATTGCTTTTATTTGCAAAAAATTGCATCAGTCACCCGTTTGATTCCTAGTTATAAGAGTCAGACAGCAACACACTATGTAGATAACAATTTTTCCTGGATTGAGCAACAAATCTCTACCAGCGTTCTCGAATAGTGGCTATTGCGGCGCTGTAGCACTATAGCTAAACGGAATTTAAACAAATCACTATTGTTTTCCAATACGCTATTTATTAGCAGCTATAACACTGCTATATCACTGTAGCGCAGCGGAATTCGAACACAACACTATTTTTCATAATTGACAACACTGATCTCTATTGTCAATTTCAAATTTAATTGTCGGGGAGTGGAGGAAGAGGGAATTGGAGATAGTTGTTTATCAAATATAATCAATTGTAAGACAAATCTACCCTGGCTGCTGTTGTTCAATAGCCAGGGTTGCAGATTCAGTGTGTGCTTTCATTTCCTTTCAGACCCTGATTGATTTTTTTTCTTTTACATCATAGCATCTTAAAATCTCTGCCATTATCAGTGTAGTTGTGTGCTTCCTGACCCTCTCATTTTTCTCCTTGGTGGGTTACCCCTAGGTAGTTAGTTAGCAAGTGAGTTAGGGAGACAATTAGGAGAAATAAGGAATGTTGCCAATAAATAAAAGGGATTGAGCATGAGGGGTGTTTTGTCGTTTGAGAGGAGGTGCAAACCCTCAAAGTTCTGCAACCTGTTATGTAATCAAAGGGAATTCTTCTCTATTTCTGTGAATCCGTGATACAATGTCGGTTGATATCAATCAGCATCAGAGCCGATCTTGGAGGGTAGGATGCAACTGATGATAAATATGTGAATGCAATGGTTGTGGCCGATGCTTCAGGAATTCTGTCCAGCAACTAGAGTAACTCTGGATGACATAGGTTCCACAGAAAATATTGTGAGAGAAAGGGAGGAGGGAAGGGTAGTAATGGACTATCTTCTACAGCATTTGGTTCAATCTGTTGACATAATGGACCTGCCTTGAGTTACTGAAGAAAATAATAGAGCTTTACCGGACTCTTCTGTAAGTGATAAGCCAAGTAAGTCCAGCAGGTTAGAGCTACAAAAACAAGTTCCATGATACCCATGTGCCCTTGTTAATGTTCAGACTGTCTATCACCTCTAAACCAGGAGCCACAACTCATGCAATCAATCCAAACCTCCACCTCCTGACACTGGTGTGTGAGTGGCGTAAAAGAAGTTTTTGTCGTACTGAGGAACATTTTGGCTACTGAAAGAATGCATCTTGCCTCGGCTATATATAAGAGGGATTTAGAGGGGTCTCTTGTCATTTAAGAGAATTAAGGTCTTTAGATTATGAGCAATATAAAATGTTGGTTATTTACATAGCAAGTTAGGAACTTGCTGTCCTCATCTTCTCTCATTCTATCAACTAAATTCCATGTTTCAGTCTCTGCATTATCTCTTGTACGTCTATTGCTGTGTTTTGTAACTTGGATTTGTCAGAGGTGCACAATCCGGAAGTTTTGCAATCTATTTTGTAGGCAAAAGGAATTGTTTGCCCTTATTATGCTGTGATAAATTACCGGCTCGTATCACTCTTTTCCCCCCAAATTATTATAATAATTTCACCCTGGGAATCACTGGGAGTTTTCTCATTTTGTGTTGATTTTTCATGAATCTCAAACTGGATATATTCTTAAAAGCAGTGTGATAAAGTGGAAAAAGAAAAAACTAAGAATTTTATTCATGGCTTAATATATGTTATATATACATAATACATAATACATAATAAAATATACTGATATCTTCCAATTGTTTTTTTTATTTGTTGCAGAGTAGCTAGGGGACCTGACTATAAGATTATCATGATGGTGAATTCACCTGATGGTGGAAAAGGAAGCAGGTAAAATATGATGAAGATAAACTATTCTTGTATAATAACAATTACCTTATAGAATTGCTAGTGAACTTTGGTCTTCCTTTTCCCAGTTTTTGGAGCACTGGATATATCTCAACATGTATGCATTGTTTTGACTTTTCTTCTTATATATAAAAAATATTCTGTACTTTATAATTTACTTAAGGGTTTGTTTAAACTAGATCTAGAAGCTTTTTGTTTAGGATAACTGAAATAACTATTGGGGGCTTGTGTGTGTATATCGATAGCTCTCTCCCATACCATTTATTTAACTTCGACGGATGGATCTGTATATGGTTAATTTGTAAACTATATGGGACGGAACTTTTCACCCCCTAATATTACTGACGGATGGAAAAAACGTGAATTTTATGTTGTTTTGAAGTAGACTTTCGAAAATATCGGTGATTTTTTCCTTCAGAAATATGGGGTTGGAAGTAGACTTTTGAAAATATCTGATTTTTTTTCTTTATTGAAATGAGGGGTGGGAAAATTTTCCAAACTATATGCTATGAAATTTAAATATAATCTATCCCATTTCACTCTATTGGTAAAATTCAACAAATGGTAAAAATATTGAAGTTAAGATGGCTACAACCAGCTCTTTTGCAAACCAAAGTTTTTCTTCTCAATGGACATTGCTACCCAATTCTCAGTTTTTGACTTTTACACCCCCATCCTTCATATTTATCTTAGTGCCCAGAATACTCTTGTTCCTATGCTCCTTTTGGAATTTACTTTTCTTCACCCCCAAATGCATAAATTTTGCACGTCTGGATGCGTATTTTTGAACAATTTGTGCGGTCTGGGCGCATATTTTTTAACATAGTAGGGTGGAGGTTTGATGGAAAATGGAGTCCATTCTTTTGTCTTCGGGGAAGTGGCAAACAAAATTGACTTTTGAGGTCAAATTTTTGTTTTTACTGCAAGAAACTTAGTTTTTGAAAAGCATACAAACACAGCATACCTCTCCATAATTGCAAGATCCATACTGAATAGATTCCCCCCTTTTTGCAGCACCACCTCTGCTTCAAAACGTCGTAGTTGCACCTTTTGCTGTGTTACATTCAATGGTGTAACTCCTACTTCGTTGTGCATGTTGTTGCACTGTCTTGCAATAGGCAATGATGTAACTCCTCCTACTCTGGTGTCGTGCCTCACGACGCCCTCTGGTGTCGTGCCTCACGACGCCTCCTCTTAG

Protein sequence

>MS.gene95305.t1

MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEVRKGDGMQLDELIQNTSFSRETSARIQPFDLDILKEAFQLRETAPIDLPAAEKGIPTIAGKSKSEKDKEKKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHRDSSADHSKKHHEKKRKHDGDDDANDVHKHKKSKHKSSRIDELGAIKEFCPATRVTLDDIENNRALPDSSVSDKPSKSSRSHNSCNQSKPPPPDTGVVARGPDYKIIMMVNSPDGGKGSSTTSASKRRSCTFCCVTFNGVTPTSLCMLLHCLAIGNDVTPPTLVSCLTTPSGVVPHDASS