AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038834.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038834.01.T01 MTR_7g062970 91.453 117 9 1 4 120 5 120 8.82e-75 218
MsG0780038834.01.T01 MTR_7g062970 89.583 96 9 1 4 99 5 99 4.48e-59 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038834.01.T01 AT5G02120 65.169 89 31 0 32 120 22 110 1.07e-35 118

Find 40 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGAGGCTGTACTTT+TGG 0.250391 7:+53767311 None:intergenic
GATGAATGATGATGGTAATT+TGG 0.273708 7:+53767601 None:intergenic
CAATTTAAACCACCATTTCT+TGG 0.280965 7:-53767296 MsG0780038834.01.T01:CDS
TTACCATCATCATTCATCTT+AGG 0.293810 7:-53767596 MsG0780038834.01.T01:CDS
CTGCTGGTCTGTTCAAGTTA+TGG 0.307312 7:+53767525 None:intergenic
TTACAAAGACTGCTGAAATA+TGG 0.315164 7:-53767271 MsG0780038834.01.T01:CDS
AATGTCAATACAATTGTAAA+TGG 0.333821 7:-53764884 MsG0780038834.01.T01:three_prime_UTR
CTCTTCCTGTGAGGTGCTGC+TGG 0.363766 7:+53767509 None:intergenic
TTTGAAGGAACAAAAGTTGA+TGG 0.364124 7:+53767549 None:intergenic
GAGGTGATTGGACTTGAAAT+TGG 0.366463 7:-53765059 MsG0780038834.01.T01:CDS
AACTCTAGAGCTTGCATGAT+TGG 0.377218 7:-53767248 MsG0780038834.01.T01:CDS
AATTTAAACCACCATTTCTT+GGG 0.388545 7:-53767295 MsG0780038834.01.T01:CDS
GCTTGCATGATTGGACTCAT+TGG 0.438899 7:-53767239 MsG0780038834.01.T01:CDS
ATTGGACTTGAAATTGGAAA+AGG 0.466493 7:-53765053 MsG0780038834.01.T01:CDS
GTCTTTGTAAACCCAAGAAA+TGG 0.473103 7:+53767284 None:intergenic
AGAAATGGTGGTTTAAATTG+AGG 0.476737 7:+53767299 None:intergenic
AAGGGAATACTTGAGGTGAT+TGG 0.488182 7:-53765071 MsG0780038834.01.T01:CDS
CAAGCAGTAAAACCTCCTTC+TGG 0.490122 7:-53767470 MsG0780038834.01.T01:CDS
ATGTTGCTTGATTTAGTACA+TGG 0.521063 7:-53764860 MsG0780038834.01.T01:three_prime_UTR
ATGATCAAAGAGGAATATCA+AGG 0.554694 7:+53765030 None:intergenic
ACTCACAAGCTCTACAATGA+AGG 0.558455 7:+53767214 None:intergenic
ATGAAATTGAATGATCAAAG+AGG 0.565873 7:+53765020 None:intergenic
TATAAAGTGCTTACACCAGA+AGG 0.567321 7:+53767455 None:intergenic
GTTCCTAAGATGAATGATGA+TGG 0.568966 7:+53767593 None:intergenic
CAGCTACTCCTTCACTGTGC+GGG 0.569517 7:+53767658 None:intergenic
TTTGGTTGATGAGGTAGCCA+TGG 0.573745 7:+53767619 None:intergenic
TTTGTAAACCCAAGAAATGG+TGG 0.575768 7:+53767287 None:intergenic
CTAGATAACCCGCACAGTGA+AGG 0.593238 7:-53767666 MsG0780038834.01.T01:five_prime_UTR
TCACCTCAAGTATTCCCTTG+TGG 0.604136 7:+53765075 None:intergenic
ACAGACCAGCAGCACCTCAC+AGG 0.606120 7:-53767514 MsG0780038834.01.T01:CDS
GTTTGTAGAGTGAAGTGAAG+GGG 0.621170 7:+53767571 None:intergenic
GCAGTTATCAACCATTGCCA+TGG 0.621824 7:-53767636 MsG0780038834.01.T01:exon
AATCCACAAGGGAATACTTG+AGG 0.628186 7:-53765078 MsG0780038834.01.T01:CDS
TGATGGTAATTTGGTTGATG+AGG 0.628797 7:+53767610 None:intergenic
TGGTTTGTAGAGTGAAGTGA+AGG 0.633356 7:+53767569 None:intergenic
GCAGCTACTCCTTCACTGTG+CGG 0.644479 7:+53767657 None:intergenic
TGATGAGGTAGCCATGGCAA+TGG 0.664851 7:+53767625 None:intergenic
AAAGTGCTTACACCAGAAGG+AGG 0.671074 7:+53767458 None:intergenic
AAGGAAACTCTCTTCCTGTG+AGG 0.718755 7:+53767500 None:intergenic
GGTTTGTAGAGTGAAGTGAA+GGG 0.731952 7:+53767570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAATGTTTATAAATG+GGG - Chr7:53766746-53766765 MsG0780038834.01.T01:intron 10.0%
!! CAAATTAAATGTTTATAAAT+GGG - Chr7:53766745-53766764 MsG0780038834.01.T01:intron 10.0%
!!! TCAATTTTAACTTTTTAAAA+TGG - Chr7:53767558-53767577 MsG0780038834.01.T01:CDS 10.0%
!! CCAAATTAAATGTTTATAAA+TGG - Chr7:53766744-53766763 MsG0780038834.01.T01:intron 15.0%
!! CCATTTATAAACATTTAATT+TGG + Chr7:53766747-53766766 None:intergenic 15.0%
!! GTTATAAAATAACAAATAGT+TGG - Chr7:53767092-53767111 MsG0780038834.01.T01:intron 15.0%
!!! ACAATTAATAAAATGGATTT+TGG - Chr7:53765788-53765807 MsG0780038834.01.T01:intron 15.0%
!!! ATTTGCATTTTATATGTAAT+AGG - Chr7:53765361-53765380 MsG0780038834.01.T01:intron 15.0%
!!! TAAGTTATTTATGAAGTTTT+TGG - Chr7:53765159-53765178 MsG0780038834.01.T01:intron 15.0%
!!! TAATTTTTATAAGCTTATAG+TGG + Chr7:53767254-53767273 None:intergenic 15.0%
!!! TTTGCATTTTATATGTAATA+GGG - Chr7:53765362-53765381 MsG0780038834.01.T01:intron 15.0%
!! AAATCAAAGTTTACTAATGT+TGG - Chr7:53765572-53765591 MsG0780038834.01.T01:intron 20.0%
!! AATACAATGTAAATGTATAG+AGG - Chr7:53765539-53765558 MsG0780038834.01.T01:intron 20.0%
!! AATCACACAATAACTTAATT+AGG + Chr7:53767412-53767431 None:intergenic 20.0%
!! AATGTCAATACAATTGTAAA+TGG - Chr7:53767644-53767663 MsG0780038834.01.T01:five_prime_UTR 20.0%
!! AGAATAATGTTTATGCTTAA+AGG + Chr7:53767388-53767407 None:intergenic 20.0%
!! ATAAAAACATTGAGATTAGA+TGG - Chr7:53765443-53765462 MsG0780038834.01.T01:intron 20.0%
!! ATGAAACTAATATGAAAAGT+TGG + Chr7:53766053-53766072 None:intergenic 20.0%
!! GTAGTGTTTGATAAAATTAA+CGG - Chr7:53767194-53767213 MsG0780038834.01.T01:intron 20.0%
!! TGCACAAAATTAAGAATAAA+TGG - Chr7:53765417-53765436 MsG0780038834.01.T01:intron 20.0%
!!! ACTTTTCATATTAGTTTCAT+AGG - Chr7:53766053-53766072 MsG0780038834.01.T01:intron 20.0%
!!! ATGAAGTTTTTGGATTATTT+GGG - Chr7:53765169-53765188 MsG0780038834.01.T01:intron 20.0%
!!! GTAAACTTTGATTTTAATCT+CGG + Chr7:53765566-53765585 None:intergenic 20.0%
!!! TAAACTTTGATTTTAATCTC+GGG + Chr7:53765565-53765584 None:intergenic 20.0%
!!! TATGAAGTTTTTGGATTATT+TGG - Chr7:53765168-53765187 MsG0780038834.01.T01:intron 20.0%
!!! TTGAATGAAAAAGATCTTTT+TGG + Chr7:53767318-53767337 None:intergenic 20.0%
!!! TTGCATTTTATATGTAATAG+GGG - Chr7:53765363-53765382 MsG0780038834.01.T01:intron 20.0%
! AATTTAAACCACCATTTCTT+GGG - Chr7:53765233-53765252 MsG0780038834.01.T01:intron 25.0%
! ATAATGTTTATGCTTAAAGG+AGG + Chr7:53767385-53767404 None:intergenic 25.0%
! ATGAAATTGAATGATCAAAG+AGG + Chr7:53767511-53767530 None:intergenic 25.0%
! ATGTTAAGAAGTTGAAAGAT+AGG - Chr7:53765676-53765695 MsG0780038834.01.T01:intron 25.0%
! ATTAAGTTATTGTGTGATTC+TGG - Chr7:53767413-53767432 MsG0780038834.01.T01:intron 25.0%
! CAGAAAACTAATTGTGAATA+AGG + Chr7:53765880-53765899 None:intergenic 25.0%
! GAGACATTAAAATGAATGAA+GGG - Chr7:53766492-53766511 MsG0780038834.01.T01:intron 25.0%
! GTATTCTATTTGATCAAGAT+CGG + Chr7:53765524-53765543 None:intergenic 25.0%
! TATAACAGATGAACTTATAG+CGG - Chr7:53767117-53767136 MsG0780038834.01.T01:intron 25.0%
! TGAGACATTAAAATGAATGA+AGG - Chr7:53766491-53766510 MsG0780038834.01.T01:intron 25.0%
! TGTTAAGAAGTTGAAAGATA+GGG - Chr7:53765677-53765696 MsG0780038834.01.T01:intron 25.0%
!! ACCTGTAAAGTGTTTATAAT+TGG - Chr7:53766908-53766927 MsG0780038834.01.T01:intron 25.0%
!! AGTCACACTTTTATAATTTG+TGG + Chr7:53766984-53767003 None:intergenic 25.0%
!! CCTGTAAAGTGTTTATAATT+GGG - Chr7:53766909-53766928 MsG0780038834.01.T01:intron 25.0%
!! CTGTAAAGTGTTTATAATTG+GGG - Chr7:53766910-53766929 MsG0780038834.01.T01:intron 25.0%
!!! ACACTTTTATAATTTGTGGT+TGG + Chr7:53766980-53766999 None:intergenic 25.0%
!!! CCATCTTAAAATTTTGGTTT+AGG - Chr7:53767061-53767080 MsG0780038834.01.T01:intron 25.0%
!!! CCTAAACCAAAATTTTAAGA+TGG + Chr7:53767064-53767083 None:intergenic 25.0%
!!! GAAAAAGATCTTTTTGGTAA+CGG + Chr7:53767312-53767331 None:intergenic 25.0%
!!! TTAAGGTGTCATTAAAAGAA+TGG - Chr7:53766525-53766544 MsG0780038834.01.T01:intron 25.0%
AAAAGGATTTGGATTCTCTT+CGG - Chr7:53765466-53765485 MsG0780038834.01.T01:intron 30.0%
AAACAGGAGAAAAAGTTAAC+TGG + Chr7:53765715-53765734 None:intergenic 30.0%
ACAAGAAGAGATAACGATAA+CGG - Chr7:53766322-53766341 MsG0780038834.01.T01:intron 30.0%
ACATTGAGATTAGATGGAAA+AGG - Chr7:53765449-53765468 MsG0780038834.01.T01:intron 30.0%
AGAAATGGTGGTTTAAATTG+AGG + Chr7:53765232-53765251 None:intergenic 30.0%
AGATTAGATGGAAAAGGATT+TGG - Chr7:53765455-53765474 MsG0780038834.01.T01:intron 30.0%
AGTTAGATCCAATTCTAACA+TGG - Chr7:53766784-53766803 MsG0780038834.01.T01:intron 30.0%
ATGATCAAAGAGGAATATCA+AGG + Chr7:53767501-53767520 None:intergenic 30.0%
ATGTTCAATCTTGAACATCA+CGG + Chr7:53766685-53766704 None:intergenic 30.0%
ATTGGACTTGAAATTGGAAA+AGG - Chr7:53767475-53767494 MsG0780038834.01.T01:CDS 30.0%
CAATTTAAACCACCATTTCT+TGG - Chr7:53765232-53765251 MsG0780038834.01.T01:intron 30.0%
CCCAATTATAAACACTTTAC+AGG + Chr7:53766912-53766931 None:intergenic 30.0%
CTCTAATACCATGTTAGAAT+TGG + Chr7:53766795-53766814 None:intergenic 30.0%
GATATGATGTTAAGATCACA+GGG + Chr7:53766017-53766036 None:intergenic 30.0%
GGCAGTTTATGTAAATTACT+TGG + Chr7:53766112-53766131 None:intergenic 30.0%
GTGTGTTAAGAGTCTAATAT+TGG - Chr7:53766712-53766731 MsG0780038834.01.T01:intron 30.0%
TAAAAATGGATGGTTAGGAT+TGG + Chr7:53765747-53765766 None:intergenic 30.0%
TATAACAACAAAGCAAAGCA+AGG + Chr7:53765965-53765984 None:intergenic 30.0%
TCAAACACTACAAATTCCAT+CGG + Chr7:53767185-53767204 None:intergenic 30.0%
TGAACATGTGATTAAACTAG+CGG + Chr7:53766156-53766175 None:intergenic 30.0%
TGATATGATGTTAAGATCAC+AGG + Chr7:53766018-53766037 None:intergenic 30.0%
TGATCTAAAAATGGATGGTT+AGG + Chr7:53765752-53765771 None:intergenic 30.0%
TTACAAAGACTGCTGAAATA+TGG - Chr7:53765257-53765276 MsG0780038834.01.T01:intron 30.0%
TTACCATCATCATTCATCTT+AGG - Chr7:53764932-53764951 MsG0780038834.01.T01:three_prime_UTR 30.0%
TTTGAAGGAACAAAAGTTGA+TGG + Chr7:53764982-53765001 None:intergenic 30.0%
! AGTACATGTTTTCTGTCATT+TGG - Chr7:53767586-53767605 MsG0780038834.01.T01:CDS 30.0%
! ATGTTGCTTGATTTAGTACA+TGG - Chr7:53767668-53767687 MsG0780038834.01.T01:five_prime_UTR 30.0%
! ATTTTGCAGATAATCCACAA+GGG - Chr7:53767439-53767458 MsG0780038834.01.T01:intron 30.0%
! CGTCTACCATCTTAAAATTT+TGG - Chr7:53767055-53767074 MsG0780038834.01.T01:intron 30.0%
! TAAATTGAGGCTGTACTTTT+GGG + Chr7:53765219-53765238 None:intergenic 30.0%
! TATTTTGCAGATAATCCACA+AGG - Chr7:53767438-53767457 MsG0780038834.01.T01:intron 30.0%
! TTAAATTGAGGCTGTACTTT+TGG + Chr7:53765220-53765239 None:intergenic 30.0%
! TTTTACTGCTTGAACAGTTA+AGG + Chr7:53765050-53765069 None:intergenic 30.0%
!! ACCATCCATTTTTAGATCAA+CGG - Chr7:53765753-53765772 MsG0780038834.01.T01:intron 30.0%
!! GATGAATGATGATGGTAATT+TGG + Chr7:53764930-53764949 None:intergenic 30.0%
!!! TGTTCAAGTTATGGTTTTGA+AGG + Chr7:53764997-53765016 None:intergenic 30.0%
!!! TTTGGGTTTGTGTTATTTTC+AGG - Chr7:53765186-53765205 MsG0780038834.01.T01:intron 30.0%
AACTGCTTTAATCCGTGAAT+TGG - Chr7:53765620-53765639 MsG0780038834.01.T01:intron 35.0%
ACATAAACCAAACAAACCCT+TGG - Chr7:53767351-53767370 MsG0780038834.01.T01:intron 35.0%
ACCGATCATTTAATACTGCT+GGG - Chr7:53766852-53766871 MsG0780038834.01.T01:intron 35.0%
ATTATTCCACAGGAGAAAAC+AGG - Chr7:53766557-53766576 MsG0780038834.01.T01:intron 35.0%
CATAAACTGCCAAGACATAT+AGG - Chr7:53766121-53766140 MsG0780038834.01.T01:intron 35.0%
CTAACACAACTCCACAAAAT+CGG + Chr7:53766955-53766974 None:intergenic 35.0%
GTAGATTGCAAAGTGACTTA+GGG + Chr7:53765919-53765938 None:intergenic 35.0%
GTATATGATTGTGCAGAGAT+GGG + Chr7:53765858-53765877 None:intergenic 35.0%
GTCTTTGTAAACCCAAGAAA+TGG + Chr7:53765247-53765266 None:intergenic 35.0%
GTTCCTAAGATGAATGATGA+TGG + Chr7:53764938-53764957 None:intergenic 35.0%
TCTATTTGATCAAGATCGGA+CGG + Chr7:53765520-53765539 None:intergenic 35.0%
TGAAGGGCTAAGATCAATTA+AGG - Chr7:53766508-53766527 MsG0780038834.01.T01:intron 35.0%
TGTAGATTGCAAAGTGACTT+AGG + Chr7:53765920-53765939 None:intergenic 35.0%
TGTTGTTATGGAAGATGAAG+CGG - Chr7:53766417-53766436 MsG0780038834.01.T01:intron 35.0%
TTCATTGAACCATGTGTTAC+TGG + Chr7:53767022-53767041 None:intergenic 35.0%
TTTATGCTTAAAGGAGGAGT+GGG + Chr7:53767379-53767398 None:intergenic 35.0%
TTTGTAAACCCAAGAAATGG+TGG + Chr7:53765244-53765263 None:intergenic 35.0%
! GTGTCATTAAAAGAATGGAC+GGG - Chr7:53766530-53766549 MsG0780038834.01.T01:intron 35.0%
! TATAAAGTGCTTACACCAGA+AGG + Chr7:53765076-53765095 None:intergenic 35.0%
! TCATTGAACCATGTGTTACT+GGG + Chr7:53767021-53767040 None:intergenic 35.0%
! TGATGGTAATTTGGTTGATG+AGG + Chr7:53764921-53764940 None:intergenic 35.0%
!! GGTGTCATTAAAAGAATGGA+CGG - Chr7:53766529-53766548 MsG0780038834.01.T01:intron 35.0%
AAGCCAGAATGTGAAAAGGA+AGG - Chr7:53766458-53766477 MsG0780038834.01.T01:intron 40.0%
AAGGGAATACTTGAGGTGAT+TGG - Chr7:53767457-53767476 MsG0780038834.01.T01:intron 40.0%
AAGTGACTTAGGGTACGAAT+TGG + Chr7:53765909-53765928 None:intergenic 40.0%
AATCCACAAGGGAATACTTG+AGG - Chr7:53767450-53767469 MsG0780038834.01.T01:intron 40.0%
AATGCCCTCTTCTATCTTTC+AGG + Chr7:53766612-53766631 None:intergenic 40.0%
ACTCACAAGCTCTACAATGA+AGG + Chr7:53765317-53765336 None:intergenic 40.0%
AGCCAGAATGTGAAAAGGAA+GGG - Chr7:53766459-53766478 MsG0780038834.01.T01:intron 40.0%
AGCTGCCGTTGATCTAAAAA+TGG + Chr7:53765761-53765780 None:intergenic 40.0%
ATGCCCTCTTCTATCTTTCA+GGG + Chr7:53766611-53766630 None:intergenic 40.0%
CACCGATCATTTAATACTGC+TGG - Chr7:53766851-53766870 MsG0780038834.01.T01:intron 40.0%
CATCAAGAGTCACCAATTCA+CGG + Chr7:53765635-53765654 None:intergenic 40.0%
CATGATTCAGATCTTCACAC+CGG + Chr7:53766251-53766270 None:intergenic 40.0%
CCCCAGCAGTATTAAATGAT+CGG + Chr7:53766856-53766875 None:intergenic 40.0%
CCGATCATTTAATACTGCTG+GGG - Chr7:53766853-53766872 MsG0780038834.01.T01:intron 40.0%
CGATCATTTAATACTGCTGG+GGG - Chr7:53766854-53766873 MsG0780038834.01.T01:intron 40.0%
GACTCTTGATGCTATTAGAC+TGG - Chr7:53765644-53765663 MsG0780038834.01.T01:intron 40.0%
GAGGTGATTGGACTTGAAAT+TGG - Chr7:53767469-53767488 MsG0780038834.01.T01:CDS 40.0%
GCCGTTGATCTAAAAATGGA+TGG + Chr7:53765757-53765776 None:intergenic 40.0%
GGTATATGATTGTGCAGAGA+TGG + Chr7:53765859-53765878 None:intergenic 40.0%
GGTTTGTAGAGTGAAGTGAA+GGG + Chr7:53764961-53764980 None:intergenic 40.0%
GTTGAGAGTCTCACATTAGA+TGG - Chr7:53766882-53766901 MsG0780038834.01.T01:intron 40.0%
GTTTATGCTTAAAGGAGGAG+TGG + Chr7:53767380-53767399 None:intergenic 40.0%
GTTTGTAGAGTGAAGTGAAG+GGG + Chr7:53764960-53764979 None:intergenic 40.0%
TCTCCCTGAAAGATAGAAGA+GGG - Chr7:53766605-53766624 MsG0780038834.01.T01:intron 40.0%
! AGAGATAACGATAACGGTGA+CGG - Chr7:53766328-53766347 MsG0780038834.01.T01:intron 40.0%
! CGATTTTGTGGAGTTGTGTT+AGG - Chr7:53766953-53766972 MsG0780038834.01.T01:intron 40.0%
! TCATTGGGTCTGTGTTGTTA+TGG - Chr7:53766405-53766424 MsG0780038834.01.T01:intron 40.0%
! TGGTTTGTAGAGTGAAGTGA+AGG + Chr7:53764962-53764981 None:intergenic 40.0%
! TTCCCTTCCTTTTCACATTC+TGG + Chr7:53766464-53766483 None:intergenic 40.0%
!! AACTCTAGAGCTTGCATGAT+TGG - Chr7:53765280-53765299 MsG0780038834.01.T01:intron 40.0%
!! AGAGTGTCGTTCAAGATTGT+TGG - Chr7:53766811-53766830 MsG0780038834.01.T01:intron 40.0%
!! AGCGGTTTCTATTTTTCTCC+AGG - Chr7:53766435-53766454 MsG0780038834.01.T01:intron 40.0%
!! CACCTGTAAAACCGATTTTG+TGG - Chr7:53766941-53766960 MsG0780038834.01.T01:intron 40.0%
!! CTCCACAAAATCGGTTTTAC+AGG + Chr7:53766946-53766965 None:intergenic 40.0%
AAGGAAACTCTCTTCCTGTG+AGG + Chr7:53765031-53765050 None:intergenic 45.0%
ACTGCCAAGACATATAGGCA+TGG - Chr7:53766126-53766145 MsG0780038834.01.T01:intron 45.0%
AGGATTTGGATTCTCTTCGG+TGG - Chr7:53765469-53765488 MsG0780038834.01.T01:intron 45.0%
ATAGCAGATAAGCTGACCGA+TGG - Chr7:53767166-53767185 MsG0780038834.01.T01:intron 45.0%
ATTCCACAGGAGAAAACAGG+AGG - Chr7:53766560-53766579 MsG0780038834.01.T01:intron 45.0%
ATTGTTGGACCACCTGCTAT+TGG - Chr7:53766826-53766845 MsG0780038834.01.T01:intron 45.0%
CAAGCAGTAAAACCTCCTTC+TGG - Chr7:53765058-53765077 MsG0780038834.01.T01:CDS 45.0%
CAGGAAGCCAGAATGTGAAA+AGG - Chr7:53766454-53766473 MsG0780038834.01.T01:intron 45.0%
CATCCCATGCCTATATGTCT+TGG + Chr7:53766133-53766152 None:intergenic 45.0%
CGGTGTGAAGATCTGAATCA+TGG - Chr7:53766249-53766268 MsG0780038834.01.T01:intron 45.0%
CTCTCCCTGAAAGATAGAAG+AGG - Chr7:53766604-53766623 MsG0780038834.01.T01:intron 45.0%
CTCTTCTATCTTTCAGGGAG+AGG + Chr7:53766606-53766625 None:intergenic 45.0%
CTGCCAAGACATATAGGCAT+GGG - Chr7:53766127-53766146 MsG0780038834.01.T01:intron 45.0%
GATCTGAATCATGGAGTTGC+TGG - Chr7:53766258-53766277 MsG0780038834.01.T01:intron 45.0%
GCAGTTATCAACCATTGCCA+TGG - Chr7:53764892-53764911 MsG0780038834.01.T01:three_prime_UTR 45.0%
GCTGGCGATCGTGAAAAAAT+AGG - Chr7:53766276-53766295 MsG0780038834.01.T01:intron 45.0%
GCTTGCATGATTGGACTCAT+TGG - Chr7:53765289-53765308 MsG0780038834.01.T01:intron 45.0%
GTCTCGTGAGGAAGAAAGAA+GGG + Chr7:53765820-53765839 None:intergenic 45.0%
TCACCTCAAGTATTCCCTTG+TGG + Chr7:53767456-53767475 None:intergenic 45.0%
TTGTTGGACCACCTGCTATT+GGG - Chr7:53766827-53766846 MsG0780038834.01.T01:intron 45.0%
! AAAGTGCTTACACCAGAAGG+AGG + Chr7:53765073-53765092 None:intergenic 45.0%
! AACCATGTGTTACTGGGTAC+TGG + Chr7:53767015-53767034 None:intergenic 45.0%
! ACCATGTGTTACTGGGTACT+GGG + Chr7:53767014-53767033 None:intergenic 45.0%
! AGAGATGGGTTTGTGAGGAA+GGG + Chr7:53765844-53765863 None:intergenic 45.0%
! ATTCCTCCTGTTTTCTCCTG+TGG + Chr7:53766566-53766585 None:intergenic 45.0%
! CTGCTGGTCTGTTCAAGTTA+TGG + Chr7:53765006-53765025 None:intergenic 45.0%
! GGAGGAATTTTCCACTGTAG+TGG - Chr7:53766578-53766597 MsG0780038834.01.T01:intron 45.0%
!! TTTGGTTGATGAGGTAGCCA+TGG + Chr7:53764912-53764931 None:intergenic 45.0%
!!! CTTTTCACATTCTGGCTTCC+TGG + Chr7:53766456-53766475 None:intergenic 45.0%
!! AATAAAAACAATTAATAAAA+TGG - Chr7:53765781-53765800 MsG0780038834.01.T01:intron 5.0%
AAAGGAGGAGTGGGAACCAA+GGG + Chr7:53767370-53767389 None:intergenic 50.0%
ACCCAGTACCCAGTAACACA+TGG - Chr7:53767010-53767029 MsG0780038834.01.T01:intron 50.0%
AGCACGTCGGTGGTAATCAA+TGG - Chr7:53766366-53766385 MsG0780038834.01.T01:intron 50.0%
ATGATCGGTGACCCAATAGC+AGG + Chr7:53766841-53766860 None:intergenic 50.0%
CGGTGGTAATCAATGGAGCA+CGG - Chr7:53766373-53766392 MsG0780038834.01.T01:intron 50.0%
CTAGATAACCCGCACAGTGA+AGG - Chr7:53764862-53764881 MsG0780038834.01.T01:three_prime_UTR 50.0%
GACGGGCAAGATTATTCCAC+AGG - Chr7:53766547-53766566 MsG0780038834.01.T01:intron 50.0%
GATTCAGATCTTCACACCGG+CGG + Chr7:53766248-53766267 None:intergenic 50.0%
GGTCTCGTGAGGAAGAAAGA+AGG + Chr7:53765821-53765840 None:intergenic 50.0%
TAAAGGAGGAGTGGGAACCA+AGG + Chr7:53767371-53767390 None:intergenic 50.0%
TGATGAGGTAGCCATGGCAA+TGG + Chr7:53764906-53764925 None:intergenic 50.0%
! AGATGGGTTTGTGAGGAAGG+GGG + Chr7:53765842-53765861 None:intergenic 50.0%
! ATGGCAATCAAGGAGCACGT+CGG - Chr7:53766353-53766372 MsG0780038834.01.T01:intron 50.0%
! CAGAGATGGGTTTGTGAGGA+AGG + Chr7:53765845-53765864 None:intergenic 50.0%
! GAGATGGGTTTGTGAGGAAG+GGG + Chr7:53765843-53765862 None:intergenic 50.0%
! GGATTGGCACAGGAGAAAAC+AGG + Chr7:53765731-53765750 None:intergenic 50.0%
! GTGGGAACCAAGGGTTTGTT+TGG + Chr7:53767361-53767380 None:intergenic 50.0%
! TGGATGGTTAGGATTGGCAC+AGG + Chr7:53765741-53765760 None:intergenic 50.0%
! TGTGCAGAGATGGGTTTGTG+AGG + Chr7:53765849-53765868 None:intergenic 50.0%
ACGGCGATTTGCGAAGGTTG+AGG + Chr7:53766186-53766205 None:intergenic 55.0%
AGCACGGCGATGACGTTCAT+TGG - Chr7:53766389-53766408 MsG0780038834.01.T01:intron 55.0%
AGGGAGAGGATCCACTACAG+TGG + Chr7:53766592-53766611 None:intergenic 55.0%
ATCGGTGACCCAATAGCAGG+TGG + Chr7:53766838-53766857 None:intergenic 55.0%
ATTCGAGATCGTGCGACTCG+CGG + Chr7:53766216-53766235 None:intergenic 55.0%
CAGCTACTCCTTCACTGTGC+GGG + Chr7:53764873-53764892 None:intergenic 55.0%
CGAGTCGCACGATCTCGAAT+GGG - Chr7:53766216-53766235 MsG0780038834.01.T01:intron 55.0%
CGGCGATTTGCGAAGGTTGA+GGG + Chr7:53766185-53766204 None:intergenic 55.0%
GAGACAACGGCGATTTGCGA+AGG + Chr7:53766192-53766211 None:intergenic 55.0%
GCACGGCGATGACGTTCATT+GGG - Chr7:53766390-53766409 MsG0780038834.01.T01:intron 55.0%
GCAGCTACTCCTTCACTGTG+CGG + Chr7:53764874-53764893 None:intergenic 55.0%
GGCGATTTGCGAAGGTTGAG+GGG + Chr7:53766184-53766203 None:intergenic 55.0%
! AACGATAACGGTGACGGCGA+TGG - Chr7:53766334-53766353 MsG0780038834.01.T01:intron 55.0%
ACAGACCAGCAGCACCTCAC+AGG - Chr7:53765014-53765033 MsG0780038834.01.T01:three_prime_UTR 60.0%
GCGAGTCGCACGATCTCGAA+TGG - Chr7:53766215-53766234 MsG0780038834.01.T01:intron 60.0%
TCAGATCTTCACACCGGCGG+CGG + Chr7:53766245-53766264 None:intergenic 60.0%
! GCAATCAAGGAGCACGTCGG+TGG - Chr7:53766356-53766375 MsG0780038834.01.T01:intron 60.0%
! GGTGACGGCGATGGCAATCA+AGG - Chr7:53766343-53766362 MsG0780038834.01.T01:intron 60.0%
!! CTCTTCCTGTGAGGTGCTGC+TGG + Chr7:53765022-53765041 None:intergenic 60.0%
GTGAGGAAGGGGGTCTCGTG+AGG + Chr7:53765832-53765851 None:intergenic 65.0%
TGCGACTCGCGGCGAGACAA+CGG + Chr7:53766205-53766224 None:intergenic 65.0%
!! CTCGAATGGGTTGCCGCCGC+CGG - Chr7:53766229-53766248 MsG0780038834.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53764835 53767715 53764835 ID=MsG0780038834.01;Name=MsG0780038834.01
Chr7 mRNA 53764835 53767715 53764835 ID=MsG0780038834.01.T01;Parent=MsG0780038834.01;Name=MsG0780038834.01.T01;_AED=0.50;_eAED=0.50;_QI=76|1|1|1|1|1|3|199|120
Chr7 exon 53764835 53765102 53764835 ID=MsG0780038834.01.T01:exon:10132;Parent=MsG0780038834.01.T01
Chr7 exon 53767220 53767342 53767220 ID=MsG0780038834.01.T01:exon:10131;Parent=MsG0780038834.01.T01
Chr7 exon 53767469 53767715 53767469 ID=MsG0780038834.01.T01:exon:10130;Parent=MsG0780038834.01.T01
Chr7 five_prime_UTR 53767640 53767715 53767640 ID=MsG0780038834.01.T01:five_prime_utr;Parent=MsG0780038834.01.T01
Chr7 CDS 53767469 53767639 53767469 ID=MsG0780038834.01.T01:cds;Parent=MsG0780038834.01.T01
Chr7 CDS 53767220 53767342 53767220 ID=MsG0780038834.01.T01:cds;Parent=MsG0780038834.01.T01
Chr7 CDS 53765034 53765102 53765034 ID=MsG0780038834.01.T01:cds;Parent=MsG0780038834.01.T01
Chr7 three_prime_UTR 53764835 53765033 53764835 ID=MsG0780038834.01.T01:three_prime_utr;Parent=MsG0780038834.01.T01
Gene Sequence

>MsG0780038834.01.T01

ATGGCTACCTCATCAACCAAATTACCATCATCATTCATCTTAGGAACCCCTTCACTTCACTCTACAAACCATCAACTTTTGTTCCTTCAAAACCATAACTTGAACAGACCAGCAGCACCTCACAGGAAGAGAGTTTCCTTAACTGTTCAAGCAGTAAAACCTCCTTCTGGTGTTGAATTCCCAAAAGTACAGCCTCAATTTAAACCACCATTTCTTGGGTTTACAAAGACTGCTGAAATATGGAACTCTAGAGCTTGCATGATTGGACTCATTGGAACCTTCATTGTAGAGCTTATAATCCACAAGGGAATACTTGAGGTGATTGGACTTGAAATTGGAAAAGGCCTTGATATTCCTCTTTGA

Protein sequence

>MsG0780038834.01.T01

MATSSTKLPSSFILGTPSLHSTNHQLLFLQNHNLNRPAAPHRKRVSLTVQAVKPPSGVEFPKVQPQFKPPFLGFTKTAEIWNSRACMIGLIGTFIVELIIHKGILEVIGLEIGKGLDIPL*