AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015619.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015619.01.T01 MTR_3g073450 73.770 305 16 6 47 288 1 304 2.09e-143 405
MsG0380015619.01.T01 MTR_7g087250 51.948 154 74 0 114 267 151 304 8.39e-52 173
MsG0380015619.01.T01 MTR_7g087250 47.934 121 63 0 114 234 151 271 3.15e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015619.01.T01 AT1G36390 55.689 167 74 0 108 274 108 274 3.65e-59 190
MsG0380015619.01.T01 AT1G36390 55.689 167 74 0 108 274 108 274 3.65e-59 190
MsG0380015619.01.T01 AT5G17710 51.592 157 76 0 111 267 146 302 3.56e-51 171
MsG0380015619.01.T01 AT5G17710 51.592 157 76 0 111 267 146 302 3.56e-51 171
MsG0380015619.01.T01 AT5G17710 51.592 157 76 0 111 267 148 304 3.86e-51 171

Find 76 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTTTCATCATTGAAAA+AGG 0.170681 3:+72610780 MsG0380015619.01.T01:three_prime_UTR
TTTCAAGAAAGAACAATTTC+TGG 0.178679 3:-72610860 None:intergenic
TGAACGAAATTGGGTGGTTT+TGG 0.202923 3:-72608349 None:intergenic
GATGGTGTTGGAGGCGTAAA+AGG 0.211120 3:-72608386 None:intergenic
TACGCCTCCAACACCATCTT+AGG 0.215286 3:+72608391 MsG0380015619.01.T01:CDS
TAACTTACCAAAGGATTAAA+AGG 0.227686 3:-72609125 None:intergenic
AGATGGAAAATGAACGAAAT+TGG 0.241708 3:-72608359 None:intergenic
TGAGGAGTCCGAAGTGTTTA+AGG 0.256357 3:+72610432 MsG0380015619.01.T01:CDS
TACAGTTGAAAAGGAATCTT+TGG 0.262150 3:-72608452 None:intergenic
AAACCATTTCCACAGCAAAA+TGG 0.268588 3:+72607915 MsG0380015619.01.T01:CDS
GAAATGCTTCTGTTGTTCTA+TGG 0.299320 3:+72610698 MsG0380015619.01.T01:three_prime_UTR
TTTCCACAGCAAAATGGTTT+TGG 0.333392 3:+72607964 MsG0380015619.01.T01:CDS
TTTCCTAAAGTTATCAAAAT+CGG 0.344530 3:-72608883 None:intergenic
GATGATGAGATTGAAGATTC+TGG 0.352230 3:+72607892 MsG0380015619.01.T01:CDS
AAACCATTTCCACAGCAAAA+TGG 0.355153 3:+72607958 MsG0380015619.01.T01:CDS
TTGATGGCTGCTCCAAGGAC+TGG 0.358588 3:-72610573 None:intergenic
TCAATTCTAGCAGCTGTTGA+TGG 0.374139 3:-72610589 None:intergenic
TTTCCACAGCAAAATGGGTT+TGG 0.377722 3:+72607921 MsG0380015619.01.T01:CDS
AACCATTTCCACAGCAAAAT+GGG 0.387641 3:+72607916 MsG0380015619.01.T01:CDS
TCTCTCGAATCAATCTCTAT+TGG 0.404166 3:+72608282 MsG0380015619.01.T01:CDS
GCACTTGTGAAGGTTTCCTT+AGG 0.414176 3:+72610517 MsG0380015619.01.T01:CDS
AGCAATTTGTAGAGACTTTG+AGG 0.424003 3:+72609066 MsG0380015619.01.T01:CDS
CCTAGTTCCACCTGCTTACC+TGG 0.428365 3:+72610654 MsG0380015619.01.T01:three_prime_UTR
AGTGGCATCTACCCAGTCCT+TGG 0.435806 3:+72610561 MsG0380015619.01.T01:CDS
GAGAGAGCGTACAGTTGAAA+AGG 0.438997 3:-72608461 None:intergenic
TCTGTTGTTCTATGGTATGT+TGG 0.451289 3:+72610706 MsG0380015619.01.T01:three_prime_UTR
AGGTTTCTTGCTCAAAGATA+AGG 0.453331 3:+72610483 MsG0380015619.01.T01:CDS
GATGGAAAATGAACGAAATT+GGG 0.454309 3:-72608358 None:intergenic
GTGAAGGTTTCCTTAGGTCC+CGG 0.454329 3:+72610523 MsG0380015619.01.T01:CDS
ATGGTGTTGGAGGCGTAAAA+GGG 0.460122 3:-72608385 None:intergenic
TGCTCAAAGATAAGGTTGTA+AGG 0.460819 3:+72610491 MsG0380015619.01.T01:CDS
CCAGGTAAGCAGGTGGAACT+AGG 0.468157 3:-72610654 None:intergenic
GGCGGATAAAGTTTCTTGTA+AGG 0.475077 3:+72608839 MsG0380015619.01.T01:CDS
GGAAAGAATTAGCATTCAAT+CGG 0.485047 3:+72608917 MsG0380015619.01.T01:CDS
TGATGGCTGCTCCAAGGACT+GGG 0.486960 3:-72610572 None:intergenic
ATCATAGACTATACTCACTT+GGG 0.505532 3:-72610730 None:intergenic
ACAACAGATTGAAGCGGAAA+CGG 0.508186 3:+72609001 MsG0380015619.01.T01:CDS
AAGGAAACCTTCACAAGTGC+TGG 0.513889 3:-72610514 None:intergenic
GATGAGGTTGAATTGAGAGT+TGG 0.521477 3:-72608418 None:intergenic
TAACAAGATACCAGGTAAGC+AGG 0.530415 3:-72610664 None:intergenic
ACGCCTCCAACACCATCTTA+GGG 0.530941 3:+72608392 MsG0380015619.01.T01:CDS
TGAAGGTTTCCTTAGGTCCC+GGG 0.534603 3:+72610524 MsG0380015619.01.T01:CDS
GGAATCTTTGGAAGCGAAGA+GGG 0.541715 3:-72608440 None:intergenic
GTTTCTGTGGTTGCAACAGT+TGG 0.545089 3:+72609098 MsG0380015619.01.T01:CDS
TTTGGAAGCGAAGAGGGATG+AGG 0.545675 3:-72608434 None:intergenic
GAGTCCGAAGTGTTTAAGGA+AGG 0.560329 3:+72610436 MsG0380015619.01.T01:CDS
TCAGAAAGTATCTACTCTAT+CGG 0.561799 3:+72608818 MsG0380015619.01.T01:intron
AATCCCTTCCTTAAACACTT+CGG 0.563851 3:-72610440 None:intergenic
AGGAATCTTTGGAAGCGAAG+AGG 0.565783 3:-72608441 None:intergenic
TATCATAGACTATACTCACT+TGG 0.567328 3:-72610731 None:intergenic
CACCGTCATCATCACCGTAC+CGG 0.570200 3:-72607991 None:intergenic
GAGGAGTCATCATGTTTCTG+TGG 0.572246 3:+72609085 MsG0380015619.01.T01:CDS
TGTAAGGCCAGCACTTGTGA+AGG 0.574016 3:+72610507 MsG0380015619.01.T01:CDS
AAACCCTAAGATGGTGTTGG+AGG 0.574613 3:-72608395 None:intergenic
TGGAAACCCTAAGATGGTGT+TGG 0.577433 3:-72608398 None:intergenic
GAGGCGTAAAAGGGGCGAGA+TGG 0.577768 3:-72608376 None:intergenic
GAGAGTTGGAAACCCTAAGA+TGG 0.578104 3:-72608404 None:intergenic
AGCTGTTGATGGCTGCTCCA+AGG 0.578183 3:-72610578 None:intergenic
TTTGAGCAAGAAACCTCGAC+GGG 0.582305 3:-72610476 None:intergenic
ACATGAAGCCGTTGGACGTG+AGG 0.584494 3:+72610414 MsG0380015619.01.T01:CDS
AGTCCGAAGTGTTTAAGGAA+GGG 0.590140 3:+72610437 MsG0380015619.01.T01:CDS
GGAAAATGAACGAAATTGGG+TGG 0.597271 3:-72608355 None:intergenic
CTTTAGGAAAAGATGTGAGA+AGG 0.603142 3:+72608896 MsG0380015619.01.T01:CDS
TTGCAGATACATGAAGCCGT+TGG 0.609028 3:+72610406 MsG0380015619.01.T01:intron
TTCGGACTCCTCACGTCCAA+CGG 0.617680 3:-72610422 None:intergenic
TTCAATCTCATCATCAACAC+CGG 0.618452 3:-72607884 None:intergenic
AGTTAAACAACAGATTGAAG+CGG 0.621582 3:+72608995 MsG0380015619.01.T01:CDS
TTTAGCAATAACAAGATACC+AGG 0.638195 3:-72610672 None:intergenic
TCATAGACTATACTCACTTG+GGG 0.638405 3:-72610729 None:intergenic
CTTTGAGCAAGAAACCTCGA+CGG 0.642365 3:-72610477 None:intergenic
TTAATACAGAAATTATACAA+TGG 0.659818 3:+72608252 MsG0380015619.01.T01:intron
GAAAGTATCTACTCTATCGG+CGG 0.660394 3:+72608821 MsG0380015619.01.T01:intron
TGGTGTTGGAGGCGTAAAAG+GGG 0.660911 3:-72608384 None:intergenic
CAAGATACCAGGTAAGCAGG+TGG 0.662145 3:-72610661 None:intergenic
ATAATTAAAGAATCCCGTCG+AGG 0.675021 3:+72610463 MsG0380015619.01.T01:CDS
ACGGTGATGATGATGAACGC+CGG 0.803982 3:+72607865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAGAAATATAGTATT+TGG + Chr3:72609672-72609691 MsG0380015619.01.T01:intron 10.0%
!! TGAAAAATTTATGAATTTAT+TGG + Chr3:72610819-72610838 MsG0380015619.01.T01:three_prime_UTR 10.0%
!!! AAATACTATATTTCTTTTTT+AGG - Chr3:72609673-72609692 None:intergenic 10.0%
!!! AATACTATATTTCTTTTTTA+GGG - Chr3:72609672-72609691 None:intergenic 10.0%
!! TTAATACAGAAATTATACAA+TGG + Chr3:72608252-72608271 MsG0380015619.01.T01:intron 15.0%
!!! AAAAACTGTAATTTGTAATT+TGG - Chr3:72610023-72610042 None:intergenic 15.0%
!!! AACAAATTAGTTTTTTTGTT+TGG + Chr3:72609863-72609882 MsG0380015619.01.T01:intron 15.0%
!!! ACAAATTAGTTTTTTTGTTT+GGG + Chr3:72609864-72609883 MsG0380015619.01.T01:intron 15.0%
!!! ATACTATATTTCTTTTTTAG+GGG - Chr3:72609671-72609690 None:intergenic 15.0%
!! AAATTAAACAATAGCAATGT+AGG - Chr3:72610368-72610387 None:intergenic 20.0%
!! ATAATTTCTGTATTAACGAA+CGG - Chr3:72608248-72608267 None:intergenic 20.0%
!! TGAAGAAATTATACAATCTA+AGG + Chr3:72608775-72608794 MsG0380015619.01.T01:intron 20.0%
!! TTATTAAATAGCATCTATAG+CGG - Chr3:72609379-72609398 None:intergenic 20.0%
!! TTTCCTAAAGTTATCAAAAT+CGG - Chr3:72608886-72608905 None:intergenic 20.0%
!!! AAAAATGTTTTTGCAAGAAT+TGG + Chr3:72609830-72609849 MsG0380015619.01.T01:intron 20.0%
!!! ACTTTTAGTATCTTAAAATG+TGG - Chr3:72609593-72609612 None:intergenic 20.0%
!!! GCTATTGTTTAATTTGTTTT+TGG + Chr3:72610373-72610392 MsG0380015619.01.T01:intron 20.0%
!!! TTTCAAATTTAACTTACCAA+AGG - Chr3:72609137-72609156 None:intergenic 20.0%
!!! TTTTGTTTGGGAATTTTATA+CGG + Chr3:72609876-72609895 MsG0380015619.01.T01:intron 20.0%
! AATTTCTTCAATCAACAATG+CGG - Chr3:72608765-72608784 None:intergenic 25.0%
! ATTATGGATTTATGACTGTA+AGG + Chr3:72609541-72609560 MsG0380015619.01.T01:intron 25.0%
! CTGATTTAAATATCGATAGA+AGG - Chr3:72609163-72609182 None:intergenic 25.0%
! TAACTTACCAAAGGATTAAA+AGG - Chr3:72609128-72609147 None:intergenic 25.0%
! TAATTTCTGTATTAACGAAC+GGG - Chr3:72608247-72608266 None:intergenic 25.0%
! TATGCTTGAAAACTAAAATG+TGG + Chr3:72610290-72610309 MsG0380015619.01.T01:intron 25.0%
! TCAAATTAGCCATAAAGAAA+AGG - Chr3:72610066-72610085 None:intergenic 25.0%
! TTCGTTTCATCATTGAAAAA+GGG + Chr3:72610781-72610800 MsG0380015619.01.T01:three_prime_UTR 25.0%
! TTTATGGCTAATTTGATTGT+TGG + Chr3:72610070-72610089 MsG0380015619.01.T01:intron 25.0%
! TTTCGTTTCATCATTGAAAA+AGG + Chr3:72610780-72610799 MsG0380015619.01.T01:three_prime_UTR 25.0%
!! ATCAAATGACCTTTTCTTTA+TGG + Chr3:72610054-72610073 MsG0380015619.01.T01:intron 25.0%
!! TTTGTTTGGGAATTTTATAC+GGG + Chr3:72609877-72609896 MsG0380015619.01.T01:intron 25.0%
!!! AGATGAGATGTTATTTGTTT+TGG + Chr3:72609618-72609637 MsG0380015619.01.T01:intron 25.0%
!!! CTGTTTTTATGTTATGTCTA+AGG + Chr3:72609975-72609994 MsG0380015619.01.T01:intron 25.0%
!!! TAGTTTTCAAGCATATAATG+TGG - Chr3:72610285-72610304 None:intergenic 25.0%
!!! TCGTTTTGTTTTGTTTTGTT+TGG + Chr3:72608109-72608128 MsG0380015619.01.T01:intron 25.0%
!!! TTTTGTTTGGTTTCATTTGA+GGG + Chr3:72608122-72608141 MsG0380015619.01.T01:intron 25.0%
AGATGGAAAATGAACGAAAT+TGG - Chr3:72608362-72608381 None:intergenic 30.0%
AGTTAAACAACAGATTGAAG+CGG + Chr3:72608995-72609014 MsG0380015619.01.T01:CDS 30.0%
ATCATAGACTATACTCACTT+GGG - Chr3:72610733-72610752 None:intergenic 30.0%
ATTATGTTGGGATTTATGCA+AGG + Chr3:72608156-72608175 MsG0380015619.01.T01:intron 30.0%
CAGATATTTGCTTGTGATTA+TGG + Chr3:72609525-72609544 MsG0380015619.01.T01:intron 30.0%
CGTTAAAAAACTTCTGTTGA+TGG + Chr3:72608956-72608975 MsG0380015619.01.T01:CDS 30.0%
CTTTCTTGTATGCTTTGATA+AGG - Chr3:72608718-72608737 None:intergenic 30.0%
GATGGAAAATGAACGAAATT+GGG - Chr3:72608361-72608380 None:intergenic 30.0%
GGAAAGAATTAGCATTCAAT+CGG + Chr3:72608917-72608936 MsG0380015619.01.T01:CDS 30.0%
TACAGTTGAAAAGGAATCTT+TGG - Chr3:72608455-72608474 None:intergenic 30.0%
TATCATAGACTATACTCACT+TGG - Chr3:72610734-72610753 None:intergenic 30.0%
TCATCTAATATGCCTTCTAT+AGG - Chr3:72610328-72610347 None:intergenic 30.0%
TTAAATCAGTTACAGACTGT+AGG + Chr3:72609174-72609193 MsG0380015619.01.T01:intron 30.0%
TTGTACCACATAGCATATTA+TGG + Chr3:72609314-72609333 MsG0380015619.01.T01:intron 30.0%
TTGTCAAATAGCTACTATAG+TGG - Chr3:72609290-72609309 None:intergenic 30.0%
TTGTTCCATAATATGCTATG+TGG - Chr3:72609322-72609341 None:intergenic 30.0%
TTTAGCAATAACAAGATACC+AGG - Chr3:72610675-72610694 None:intergenic 30.0%
! AAGATATTTTCACTTTCCAG+AGG - Chr3:72610195-72610214 None:intergenic 30.0%
! ATACAATCTAAGGCAATGAA+AGG + Chr3:72608785-72608804 MsG0380015619.01.T01:intron 30.0%
! TAAAAAACTTCTGTTGATGG+TGG + Chr3:72608959-72608978 MsG0380015619.01.T01:CDS 30.0%
!! AAGCCGATTTTGATAACTTT+AGG + Chr3:72608880-72608899 MsG0380015619.01.T01:CDS 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG - Chr3:72608583-72608602 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTTG+GGG - Chr3:72608581-72608600 None:intergenic 30.0%
!! CTTGTTTTCCAATCATATCT+GGG + Chr3:72610251-72610270 MsG0380015619.01.T01:intron 30.0%
!! GCTTATTTTCATAAGCTCTT+GGG - Chr3:72608582-72608601 None:intergenic 30.0%
!! GGATTGACAAAGTTTTATGT+TGG + Chr3:72609707-72609726 MsG0380015619.01.T01:intron 30.0%
!! GTTTTTGCAAGAATTGGTTT+TGG + Chr3:72609836-72609855 MsG0380015619.01.T01:intron 30.0%
!! TCAGAAAGTATCTACTCTAT+CGG + Chr3:72608818-72608837 MsG0380015619.01.T01:intron 30.0%
!!! ACTGAAGATTTTTTATTCCC+GGG - Chr3:72610544-72610563 None:intergenic 30.0%
!!! ATACATCTTACTTTTTCCTC+TGG + Chr3:72610176-72610195 MsG0380015619.01.T01:intron 30.0%
!!! CACTGAAGATTTTTTATTCC+CGG - Chr3:72610545-72610564 None:intergenic 30.0%
!!! GTTTTGTTTGGTTTCATTTG+AGG + Chr3:72608121-72608140 MsG0380015619.01.T01:intron 30.0%
AAAACAGAAGAGACTCGAAA+TGG + Chr3:72608660-72608679 MsG0380015619.01.T01:intron 35.0%
AAACCATTTCCACAGCAAAA+TGG + Chr3:72607915-72607934 MsG0380015619.01.T01:CDS 35.0%
AAACCTAGCAAGCTAAACAT+TGG - Chr3:72609431-72609450 None:intergenic 35.0%
AACCATTTCCACAGCAAAAT+GGG + Chr3:72607916-72607935 MsG0380015619.01.T01:CDS 35.0%
AAGCATATAATGTGGTTGAG+GGG - Chr3:72610277-72610296 None:intergenic 35.0%
AATCCCTTCCTTAAACACTT+CGG - Chr3:72610443-72610462 None:intergenic 35.0%
AATTTCATCACTCGCAATCA+AGG - Chr3:72609402-72609421 None:intergenic 35.0%
ACATCATTTCTGCCTATAGA+AGG + Chr3:72610313-72610332 MsG0380015619.01.T01:intron 35.0%
AGCAATTTGTAGAGACTTTG+AGG + Chr3:72609066-72609085 MsG0380015619.01.T01:CDS 35.0%
AGGTTTCTTGCTCAAAGATA+AGG + Chr3:72610483-72610502 MsG0380015619.01.T01:CDS 35.0%
AGTATTTGGTCGATGTCATA+GGG + Chr3:72609686-72609705 MsG0380015619.01.T01:intron 35.0%
ATAATTAAAGAATCCCGTCG+AGG + Chr3:72610463-72610482 MsG0380015619.01.T01:CDS 35.0%
ATGTTGTGGAAGTTGTTTGT+TGG - Chr3:72608215-72608234 None:intergenic 35.0%
CAACTCAAGTACTATCGAAA+GGG + Chr3:72609949-72609968 MsG0380015619.01.T01:intron 35.0%
CAAGCATATAATGTGGTTGA+GGG - Chr3:72610278-72610297 None:intergenic 35.0%
CGGGAATAAAAAATCTTCAG+TGG + Chr3:72610543-72610562 MsG0380015619.01.T01:CDS 35.0%
GAAATGCTTCTGTTGTTCTA+TGG + Chr3:72610698-72610717 MsG0380015619.01.T01:three_prime_UTR 35.0%
GATGATGAGATTGAAGATTC+TGG + Chr3:72607892-72607911 MsG0380015619.01.T01:CDS 35.0%
GATTGCGAGTGATGAAATTA+TGG + Chr3:72609403-72609422 MsG0380015619.01.T01:intron 35.0%
GTGTAGGAAGCAATTATGTT+GGG + Chr3:72608144-72608163 MsG0380015619.01.T01:intron 35.0%
TAAAATTCCGCTGCACAATA+GGG + Chr3:72609256-72609275 MsG0380015619.01.T01:intron 35.0%
TACAAGAAAGCCTTTCTCAA+CGG + Chr3:72608728-72608747 MsG0380015619.01.T01:intron 35.0%
TAGTATTTGGTCGATGTCAT+AGG + Chr3:72609685-72609704 MsG0380015619.01.T01:intron 35.0%
TCAACTCAAGTACTATCGAA+AGG + Chr3:72609948-72609967 MsG0380015619.01.T01:intron 35.0%
TCAAGCATATAATGTGGTTG+AGG - Chr3:72610279-72610298 None:intergenic 35.0%
TCATAGACTATACTCACTTG+GGG - Chr3:72610732-72610751 None:intergenic 35.0%
TCTCTCGAATCAATCTCTAT+TGG + Chr3:72608282-72608301 MsG0380015619.01.T01:CDS 35.0%
TCTGTTGTTCTATGGTATGT+TGG + Chr3:72610706-72610725 MsG0380015619.01.T01:three_prime_UTR 35.0%
TGCTCAAAGATAAGGTTGTA+AGG + Chr3:72610491-72610510 MsG0380015619.01.T01:CDS 35.0%
TTAAAATTCCGCTGCACAAT+AGG + Chr3:72609255-72609274 MsG0380015619.01.T01:intron 35.0%
TTCAATCTCATCATCAACAC+CGG - Chr3:72607887-72607906 None:intergenic 35.0%
TTGAGCAATGTTGTCAATCA+CGG + Chr3:72609211-72609230 MsG0380015619.01.T01:intron 35.0%
! AATGTGAGTGGAGATTTGTT+TGG + Chr3:72609901-72609920 MsG0380015619.01.T01:intron 35.0%
! ACAATTTAGCTCAGAGAATG+TGG - Chr3:72610112-72610131 None:intergenic 35.0%
! ATGTGAGTGGAGATTTGTTT+GGG + Chr3:72609902-72609921 MsG0380015619.01.T01:intron 35.0%
! CTTTAGGAAAAGATGTGAGA+AGG + Chr3:72608896-72608915 MsG0380015619.01.T01:CDS 35.0%
! TTTCCACAGCAAAATGGTTT+TGG + Chr3:72607964-72607983 MsG0380015619.01.T01:CDS 35.0%
!! AAACCATTTTGCTGTGGAAA+TGG - Chr3:72607964-72607983 None:intergenic 35.0%
!! ATTCAGTTTGTTTTCGCGTT+TGG + Chr3:72608085-72608104 MsG0380015619.01.T01:intron 35.0%
!! GCTTGTTTTCCAATCATATC+TGG + Chr3:72610250-72610269 MsG0380015619.01.T01:intron 35.0%
!! GTTTGTTGGTTGGTAATTAC+AGG - Chr3:72608201-72608220 None:intergenic 35.0%
AAATGACTTACCCAGCTTAG+TGG + Chr3:72608691-72608710 MsG0380015619.01.T01:intron 40.0%
ACAACAGATTGAAGCGGAAA+CGG + Chr3:72609001-72609020 MsG0380015619.01.T01:CDS 40.0%
GATGAGATTGAAGATTCCAG+TGG + Chr3:72608038-72608057 MsG0380015619.01.T01:intron 40.0%
GATGAGGTTGAATTGAGAGT+TGG - Chr3:72608421-72608440 None:intergenic 40.0%
GGAAAATGAACGAAATTGGG+TGG - Chr3:72608358-72608377 None:intergenic 40.0%
GGATTTATGCAAGGTGCATA+AGG + Chr3:72608165-72608184 MsG0380015619.01.T01:intron 40.0%
GGCGGATAAAGTTTCTTGTA+AGG + Chr3:72608839-72608858 MsG0380015619.01.T01:CDS 40.0%
GGTGTAGGAAGCAATTATGT+TGG + Chr3:72608143-72608162 MsG0380015619.01.T01:intron 40.0%
GTGAAAAACAAGACAGAGAG+AGG - Chr3:72608629-72608648 None:intergenic 40.0%
TAACAAGATACCAGGTAAGC+AGG - Chr3:72610667-72610686 None:intergenic 40.0%
TCAATTCTAGCAGCTGTTGA+TGG - Chr3:72610592-72610611 None:intergenic 40.0%
TGATTGGAAAACAAGCAGCA+TGG - Chr3:72610246-72610265 None:intergenic 40.0%
TTCTGTATTAACGAACGGGA+CGG - Chr3:72608243-72608262 None:intergenic 40.0%
TTGATAAGGACCACTAAGCT+GGG - Chr3:72608704-72608723 None:intergenic 40.0%
TTTGATAAGGACCACTAAGC+TGG - Chr3:72608705-72608724 None:intergenic 40.0%
! AGTCCGAAGTGTTTAAGGAA+GGG + Chr3:72610437-72610456 MsG0380015619.01.T01:CDS 40.0%
! ATGCCAAAACCATTTTGCTG+TGG - Chr3:72607970-72607989 None:intergenic 40.0%
! TGAACGAAATTGGGTGGTTT+TGG - Chr3:72608352-72608371 None:intergenic 40.0%
! TGGCAAGCCTTTTAATCCTT+TGG + Chr3:72609118-72609137 MsG0380015619.01.T01:CDS 40.0%
! TGTGGAAGTTGTTTGTTGGT+TGG - Chr3:72608211-72608230 None:intergenic 40.0%
! TTGGTTTCATTTGAGGGTGT+AGG + Chr3:72608128-72608147 MsG0380015619.01.T01:intron 40.0%
! TTTCCACAGCAAAATGGGTT+TGG + Chr3:72607921-72607940 MsG0380015619.01.T01:CDS 40.0%
! TTTTATACGGGCAATGTGAG+TGG + Chr3:72609889-72609908 MsG0380015619.01.T01:intron 40.0%
!! AACCCATTTTGCTGTGGAAA+TGG - Chr3:72607921-72607940 None:intergenic 40.0%
!! GAAAGTATCTACTCTATCGG+CGG + Chr3:72608821-72608840 MsG0380015619.01.T01:intron 40.0%
!! GAACCAATGTTTAGCTTGCT+AGG + Chr3:72609425-72609444 MsG0380015619.01.T01:intron 40.0%
!! TCTTTTGATTGCACTGTCAC+TGG + Chr3:72610131-72610150 MsG0380015619.01.T01:intron 40.0%
!! TTGGTTGGTAATTACAGGAG+CGG - Chr3:72608196-72608215 None:intergenic 40.0%
!!! GCAAAATGGTTTTGGCATTC+CGG + Chr3:72607972-72607991 MsG0380015619.01.T01:CDS 40.0%
!!! TAGCTTGCTAGGTTTGCTTT+TGG + Chr3:72609436-72609455 MsG0380015619.01.T01:intron 40.0%
!!! TTTTTTATTCCCGGGACCTA+AGG - Chr3:72610536-72610555 None:intergenic 40.0%
AAGGAAACCTTCACAAGTGC+TGG - Chr3:72610517-72610536 None:intergenic 45.0%
ACAGAAGAGACTCGAAATGG+CGG + Chr3:72608663-72608682 MsG0380015619.01.T01:intron 45.0%
CTTTGAGCAAGAAACCTCGA+CGG - Chr3:72610480-72610499 None:intergenic 45.0%
GAGAGTTGGAAACCCTAAGA+TGG - Chr3:72608407-72608426 None:intergenic 45.0%
GATATAGCCCTATTGTGCAG+CGG - Chr3:72609266-72609285 None:intergenic 45.0%
GCACTTGTGAAGGTTTCCTT+AGG + Chr3:72610517-72610536 MsG0380015619.01.T01:CDS 45.0%
GTTTCTGTGGTTGCAACAGT+TGG + Chr3:72609098-72609117 MsG0380015619.01.T01:CDS 45.0%
TCGTTCATCATCATCACCAC+TGG - Chr3:72608057-72608076 None:intergenic 45.0%
TGGAAACCCTAAGATGGTGT+TGG - Chr3:72608401-72608420 None:intergenic 45.0%
TTGCAGATACATGAAGCCGT+TGG + Chr3:72610406-72610425 MsG0380015619.01.T01:intron 45.0%
TTTGAGCAAGAAACCTCGAC+GGG - Chr3:72610479-72610498 None:intergenic 45.0%
! AAACCCTAAGATGGTGTTGG+AGG - Chr3:72608398-72608417 None:intergenic 45.0%
! ACGGTGATGATGATGAACGA+CGG + Chr3:72608008-72608027 MsG0380015619.01.T01:intron 45.0%
! ACTCCAAACCCATTTTGCTG+TGG - Chr3:72607927-72607946 None:intergenic 45.0%
! AGAGAATGTGGCAGGAGTAT+AGG - Chr3:72610100-72610119 None:intergenic 45.0%
! AGGAATCTTTGGAAGCGAAG+AGG - Chr3:72608444-72608463 None:intergenic 45.0%
! ATGGTGTTGGAGGCGTAAAA+GGG - Chr3:72608388-72608407 None:intergenic 45.0%
! ATGTTATGTCTAAGGCCTCG+TGG + Chr3:72609983-72610002 MsG0380015619.01.T01:intron 45.0%
! GAGAATGTGGCAGGAGTATA+GGG - Chr3:72610099-72610118 None:intergenic 45.0%
! GAGAGAGCGTACAGTTGAAA+AGG - Chr3:72608464-72608483 None:intergenic 45.0%
! GAGGAGTCATCATGTTTCTG+TGG + Chr3:72609085-72609104 MsG0380015619.01.T01:CDS 45.0%
! GAGTCCGAAGTGTTTAAGGA+AGG + Chr3:72610436-72610455 MsG0380015619.01.T01:CDS 45.0%
! GGAATCTTTGGAAGCGAAGA+GGG - Chr3:72608443-72608462 None:intergenic 45.0%
! GTGGTGATGATGATGAACGA+CGG + Chr3:72608057-72608076 MsG0380015619.01.T01:intron 45.0%
! TGAGGAGTCCGAAGTGTTTA+AGG + Chr3:72610432-72610451 MsG0380015619.01.T01:CDS 45.0%
! TGTTATGTCTAAGGCCTCGT+GGG + Chr3:72609984-72610003 MsG0380015619.01.T01:intron 45.0%
! TTTAGCTCAGAGAATGTGGC+AGG - Chr3:72610108-72610127 None:intergenic 45.0%
!!! ATGGTTTTGGCATTCCGGTA+CGG + Chr3:72607977-72607996 MsG0380015619.01.T01:CDS 45.0%
AAAGCCTTTCTCAACGGCGA+TGG + Chr3:72608734-72608753 MsG0380015619.01.T01:intron 50.0%
ACGCCTCCAACACCATCTTA+GGG + Chr3:72608392-72608411 MsG0380015619.01.T01:CDS 50.0%
CAAGATACCAGGTAAGCAGG+TGG - Chr3:72610664-72610683 None:intergenic 50.0%
CTTTCCATCGCCGTTGAGAA+AGG - Chr3:72608741-72608760 None:intergenic 50.0%
GTATTAACGAACGGGACGGA+TGG - Chr3:72608239-72608258 None:intergenic 50.0%
GTGAAGGTTTCCTTAGGTCC+CGG + Chr3:72610523-72610542 MsG0380015619.01.T01:CDS 50.0%
TACGCCTCCAACACCATCTT+AGG + Chr3:72608391-72608410 MsG0380015619.01.T01:CDS 50.0%
TGAAGGTTTCCTTAGGTCCC+GGG + Chr3:72610524-72610543 MsG0380015619.01.T01:CDS 50.0%
TGTAAGGCCAGCACTTGTGA+AGG + Chr3:72610507-72610526 MsG0380015619.01.T01:CDS 50.0%
TTGAGGGGCCCAGATATGAT+TGG - Chr3:72610262-72610281 None:intergenic 50.0%
TTTGGAAGCGAAGAGGGATG+AGG - Chr3:72608437-72608456 None:intergenic 50.0%
! GATGGTGTTGGAGGCGTAAA+AGG - Chr3:72608389-72608408 None:intergenic 50.0%
! TGGTGTTGGAGGCGTAAAAG+GGG - Chr3:72608387-72608406 None:intergenic 50.0%
! TTCCGGTACGGTGATGATGA+CGG + Chr3:72607989-72608008 MsG0380015619.01.T01:intron 50.0%
ACATGAAGCCGTTGGACGTG+AGG + Chr3:72610414-72610433 MsG0380015619.01.T01:CDS 55.0%
ACGGGACGGATGGTATGTTG+TGG - Chr3:72608229-72608248 None:intergenic 55.0%
AGTGGCATCTACCCAGTCCT+TGG + Chr3:72610561-72610580 MsG0380015619.01.T01:CDS 55.0%
ATAGCGGCGCTATAGCGTAG+CGG - Chr3:72609363-72609382 None:intergenic 55.0%
CACCGTCATCATCACCGTAC+CGG - Chr3:72607994-72608013 None:intergenic 55.0%
CCAGGTAAGCAGGTGGAACT+AGG - Chr3:72610657-72610676 None:intergenic 55.0%
CCTAGTTCCACCTGCTTACC+TGG + Chr3:72610654-72610673 MsG0380015619.01.T01:three_prime_UTR 55.0%
TGATGGCTGCTCCAAGGACT+GGG - Chr3:72610575-72610594 None:intergenic 55.0%
TTCGGACTCCTCACGTCCAA+CGG - Chr3:72610425-72610444 None:intergenic 55.0%
! TTGATGGCTGCTCCAAGGAC+TGG - Chr3:72610576-72610595 None:intergenic 55.0%
!! AGCTGTTGATGGCTGCTCCA+AGG - Chr3:72610581-72610600 None:intergenic 55.0%
GAGGCGTAAAAGGGGCGAGA+TGG - Chr3:72608379-72608398 None:intergenic 60.0%
GTTTGCAGCCAAGTCCCACG+AGG - Chr3:72610001-72610020 None:intergenic 60.0%
! GTCTAAGGCCTCGTGGGACT+TGG + Chr3:72609990-72610009 MsG0380015619.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72607871 72610877 72607871 ID=MsG0380015619.01;Name=MsG0380015619.01
Chr3 mRNA 72607871 72610877 72607871 ID=MsG0380015619.01.T01;Parent=MsG0380015619.01;Name=MsG0380015619.01.T01;_AED=0.47;_eAED=0.53;_QI=0|0.33|0.25|1|0.33|0.5|4|256|288
Chr3 exon 72610412 72610877 72610412 ID=MsG0380015619.01.T01:exon:34622;Parent=MsG0380015619.01.T01
Chr3 exon 72608822 72609139 72608822 ID=MsG0380015619.01.T01:exon:34621;Parent=MsG0380015619.01.T01
Chr3 exon 72608261 72608471 72608261 ID=MsG0380015619.01.T01:exon:34620;Parent=MsG0380015619.01.T01
Chr3 exon 72607871 72607998 72607871 ID=MsG0380015619.01.T01:exon:34619;Parent=MsG0380015619.01.T01
Chr3 CDS 72607871 72607998 72607871 ID=MsG0380015619.01.T01:cds;Parent=MsG0380015619.01.T01
Chr3 CDS 72608261 72608471 72608261 ID=MsG0380015619.01.T01:cds;Parent=MsG0380015619.01.T01
Chr3 CDS 72608822 72609139 72608822 ID=MsG0380015619.01.T01:cds;Parent=MsG0380015619.01.T01
Chr3 CDS 72610412 72610621 72610412 ID=MsG0380015619.01.T01:cds;Parent=MsG0380015619.01.T01
Chr3 three_prime_UTR 72610622 72610877 72610622 ID=MsG0380015619.01.T01:three_prime_utr;Parent=MsG0380015619.01.T01
Gene Sequence

>MsG0380015619.01.T01

ATGATGATGAACGCCGGTGTTGATGATGAGATTGAAGATTCTGGAAACCATTTCCACAGCAAAATGGGTTTGGAGTACAACTCACAGAAACCATTTCCACAGCAAAATGGTTTTGGCATTCCGGTACGAAATTATACAATGGCTACTTCTCTCTCGAATCAATCTCTATTGGCTTGTTCTTCTTCATCATCTTCTTCTTCATTCTCTTCAAAATCTCCAAAACCACCCAATTTCGTTCATTTTCCATCTCGCCCCTTTTACGCCTCCAACACCATCTTAGGGTTTCCAACTCTCAATTCAACCTCATCCCTCTTCGCTTCCAAAGATTCCTTTTCAACTAAAGTATCTACTCTATCGGCGGATAAAGTTTCTTGTAAGGAGCAATATCTTCGTTTGCAAGCCGATTTTGATAACTTTAGGAAAAGATGTGAGAAGGAAAGAATTAGCATTCAATCGGATGCTCAACAAGAATTCGTTAAAAAACTTCTGTTGATGGTGGACAGTTTTGAGAGAGTTAAACAACAGATTGAAGCGGAAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTCTTTACAAGCAATTTGTAGAGACTTTGAGGAGTCATCATGTTTCTGTGGTTGCAACAGTTGGCAAGCCTTTTAATCCTTTGATACATGAAGCCGTTGGACGTGAGGAGTCCGAAGTGTTTAAGGAAGGGATTATAATTAAAGAATCCCGTCGAGGTTTCTTGCTCAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAAAAATCTTCAGTGGCATCTACCCAGTCCTTGGAGCAGCCATCAACAGCTGCTAGAATTGATGAAAGATAA

Protein sequence

>MsG0380015619.01.T01

MMMNAGVDDEIEDSGNHFHSKMGLEYNSQKPFPQQNGFGIPVRNYTMATSLSNQSLLACSSSSSSSSFSSKSPKPPNFVHFPSRPFYASNTILGFPTLNSTSSLFASKDSFSTKVSTLSADKVSCKEQYLRLQADFDNFRKRCEKERISIQSDAQQEFVKKLLLMVDSFERVKQQIEAETEKEKKIDASYQSLYKQFVETLRSHHVSVVATVGKPFNPLIHEAVGREESEVFKEGIIIKESRRGFLLKDKVVRPALVKVSLGPGNKKSSVASTQSLEQPSTAARIDER*