AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046876.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046876.01.T01 MTR_4g116350 89.431 246 22 1 2 247 4 245 6.63e-152 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046876.01.T01 AT2G47910 59.259 243 85 4 10 242 7 245 2.30e-98 287
MsG0880046876.01.T01 AT2G47910 66.304 184 55 2 62 242 18 197 3.43e-87 257

Find 96 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATAGTCCTACAATTTC+AGG 0.123360 8:-79381455 None:intergenic
GAAACTGTATTAACCGTTTC+TGG 0.145020 8:+79379616 MsG0880046876.01.T01:five_prime_UTR
TTCACTCATGAATATAAATT+TGG 0.165623 8:+79382021 MsG0880046876.01.T01:three_prime_UTR
CTAAGGATTTGTTTACTTAT+TGG 0.185661 8:+79381928 MsG0880046876.01.T01:three_prime_UTR
ACAATTTCAGGAATCAATTT+AGG 0.211821 8:-79381443 None:intergenic
CATTCCCAAACCTGAATTAA+AGG 0.229005 8:+79381331 MsG0880046876.01.T01:CDS
TTGGAATTGAAAACAAATAA+AGG 0.250476 8:+79382040 MsG0880046876.01.T01:three_prime_UTR
TCGTGATACGTTGGATCATT+AGG 0.262875 8:-79381774 None:intergenic
CCACGTTGATGACGAGAAAT+TGG 0.265812 8:-79379758 None:intergenic
GTTGCAGATGAATATGAAAA+TGG 0.279549 8:+79381227 MsG0880046876.01.T01:intron
CTATATTCCAATACGATATA+TGG 0.283219 8:-79381631 None:intergenic
ATGGCAAGAATGCTTGGTTT+TGG 0.299846 8:+79381362 MsG0880046876.01.T01:CDS
GAAGCAATGGTCTGAATCTA+AGG 0.301805 8:-79379676 None:intergenic
TGATATTAAGTTGGTAATAT+CGG 0.307060 8:+79381572 MsG0880046876.01.T01:three_prime_UTR
TGAATTAAAGGCAAATAATA+TGG 0.311105 8:+79381343 MsG0880046876.01.T01:CDS
AGAGGGGAAGTGGTTTGTTT+TGG 0.313531 8:-79379716 None:intergenic
ATATTATTTGCCTTTAATTC+AGG 0.322155 8:-79381341 None:intergenic
CGTGATACGTTGGATCATTA+GGG 0.329212 8:-79381773 None:intergenic
TTTGCCTTTAATTCAGGTTT+GGG 0.337376 8:-79381335 None:intergenic
ACTCTTCGATCTATCATAGA+AGG 0.340744 8:+79381714 MsG0880046876.01.T01:three_prime_UTR
ATTTGCCTTTAATTCAGGTT+TGG 0.341208 8:-79381336 None:intergenic
AAAGTGTAGAAACAAATTAA+TGG 0.343866 8:+79379646 MsG0880046876.01.T01:exon
GAATTTCTTGAGCGCTCAAT+TGG 0.362235 8:+79380761 MsG0880046876.01.T01:CDS
TAATCAAATTTGTCCCTTGT+TGG 0.374285 8:+79381531 MsG0880046876.01.T01:three_prime_UTR
TGGAATTGAAAACAAATAAA+GGG 0.378875 8:+79382041 MsG0880046876.01.T01:three_prime_UTR
TGTCCCTTGTTGGTATTTGT+AGG 0.390696 8:+79381541 MsG0880046876.01.T01:three_prime_UTR
AGTATCCTGATATTAGACTA+TGG 0.405584 8:+79380837 MsG0880046876.01.T01:CDS
ACAAACCATAGTCTAATATC+AGG 0.408448 8:-79380842 None:intergenic
AGGGAAAAGCATGAAGTTAG+AGG 0.409056 8:-79379734 None:intergenic
TTTGAAATATCAATAATGTA+AGG 0.411573 8:-79381484 None:intergenic
ATGCCAGTTGCAGCTTGAAA+AGG 0.412295 8:-79380603 None:intergenic
GTCCCTTGTTGGTATTTGTA+GGG 0.415304 8:+79381542 MsG0880046876.01.T01:three_prime_UTR
AACGTATCACGAAGTGTATC+AGG 0.418246 8:+79381785 MsG0880046876.01.T01:three_prime_UTR
GCTCTCCAATCCAATAAAAC+TGG 0.419972 8:-79380893 None:intergenic
AAATTGATTCCTGAAATTGT+AGG 0.420619 8:+79381446 MsG0880046876.01.T01:three_prime_UTR
TGCCAGTTGCAGCTTGAAAA+GGG 0.422401 8:-79380602 None:intergenic
ATGATTTGCGTACCAGATAA+GGG 0.429757 8:-79380633 None:intergenic
AATAATATGGCAAGAATGCT+TGG 0.429980 8:+79381356 MsG0880046876.01.T01:CDS
TTGCGATCCATATATCGTAT+TGG 0.432963 8:+79381624 MsG0880046876.01.T01:three_prime_UTR
AATGATTTGCGTACCAGATA+AGG 0.441596 8:-79380634 None:intergenic
GAAGTTTCCTTGTGGGTTGA+AGG 0.453295 8:-79379801 None:intergenic
GAAATACTCAGTCACCCCTT+TGG 0.455791 8:+79382069 MsG0880046876.01.T01:three_prime_UTR
GTCTCTTTATTTGATGATGA+TGG 0.456703 8:+79379827 MsG0880046876.01.T01:CDS
GCATGAAGTTAGAGGGGAAG+TGG 0.457683 8:-79379726 None:intergenic
GATATTAAGTTGGTAATATC+GGG 0.466912 8:+79381573 MsG0880046876.01.T01:three_prime_UTR
GATACAACCCTACAGCTTCA+AGG 0.468210 8:+79381674 MsG0880046876.01.T01:three_prime_UTR
GGACTAGAATGATATTAAGT+TGG 0.471009 8:+79381563 MsG0880046876.01.T01:three_prime_UTR
TCGAATCGGCCTTCAGTTGG+AGG 0.473327 8:-79380537 None:intergenic
ATCTTGTCGTGTATAGTTGA+TGG 0.474003 8:-79380789 None:intergenic
ATTGGAATATAGATAATATG+AGG 0.486491 8:+79381642 MsG0880046876.01.T01:three_prime_UTR
TCCAATAAAACTGGCAACCA+TGG 0.487310 8:-79380884 None:intergenic
ACAAACAGTTCCAATGCCTC+TGG 0.491209 8:-79381263 None:intergenic
ACAGCTTCAAGGGCAAAACT+TGG 0.491252 8:+79381685 MsG0880046876.01.T01:three_prime_UTR
GACTTGATGCTGCTTATCCA+TGG 0.492069 8:+79380867 MsG0880046876.01.T01:CDS
ACATGAACAATGCATATAGT+AGG 0.497182 8:-79381960 None:intergenic
CGGCCTTCAGTTGGAGGCAT+AGG 0.503641 8:-79380531 None:intergenic
GGTATTTACTCTAGATCAAG+TGG 0.510971 8:-79381422 None:intergenic
TATCAATTACAACTTCGAAT+CGG 0.519861 8:-79380551 None:intergenic
AGACATCGAAGTTTCCTTGT+GGG 0.528434 8:-79379808 None:intergenic
ACTTCGAATCGGCCTTCAGT+TGG 0.531614 8:-79380540 None:intergenic
TTGAAATATCAATAATGTAA+GGG 0.532341 8:-79381483 None:intergenic
GGAAGTAATGTCATATGCTA+AGG 0.532927 8:+79381911 MsG0880046876.01.T01:three_prime_UTR
ATACAACCCTACAGCTTCAA+GGG 0.537820 8:+79381675 MsG0880046876.01.T01:three_prime_UTR
TAGGGCCGCAATTGCGATTG+CGG 0.539227 8:+79381120 MsG0880046876.01.T01:intron
TTTGGCAAAGGAGATGAAAG+TGG 0.539719 8:-79379698 None:intergenic
GGGAAAAGCATGAAGTTAGA+GGG 0.542061 8:-79379733 None:intergenic
CCTTCAGTTGGAGGCATAGG+AGG 0.545720 8:-79380528 None:intergenic
TTGCAGATGAATATGAAAAT+GGG 0.546953 8:+79381228 MsG0880046876.01.T01:intron
GGAATAATTGAATAATGTCA+TGG 0.558705 8:+79381594 MsG0880046876.01.T01:three_prime_UTR
GGAGAGCTGGAGAGCTAGCT+CGG 0.572069 8:+79380909 MsG0880046876.01.T01:CDS
GGAAAAGCATGAAGTTAGAG+GGG 0.574365 8:-79379732 None:intergenic
TACTACTGAGTTCTGAATTG+TGG 0.575433 8:-79381144 None:intergenic
GGAGATGAAAGTGGAAGCAA+TGG 0.582269 8:-79379689 None:intergenic
CTCTTCGATCTATCATAGAA+GGG 0.586878 8:+79381715 MsG0880046876.01.T01:three_prime_UTR
CCTCCTATGCCTCCAACTGA+AGG 0.594495 8:+79380528 MsG0880046876.01.T01:CDS
GTTGATGACGAGAAATTGGA+AGG 0.599353 8:-79379754 None:intergenic
GCCAGTTGCAGCTTGAAAAG+GGG 0.608468 8:-79380601 None:intergenic
TGATACACTTCGTGATACGT+TGG 0.609071 8:-79381783 None:intergenic
GAGACATCGAAGTTTCCTTG+TGG 0.622426 8:-79379809 None:intergenic
GATAATTCTCGAGGATCGCG+AGG 0.628859 8:-79380812 None:intergenic
CTTGAAAAGGGGTTAAGTCA+AGG 0.630683 8:-79380590 None:intergenic
ATGAGATTAGCAGAAACACA+AGG 0.632040 8:+79381842 MsG0880046876.01.T01:three_prime_UTR
GAGCGCTCAAGAAATTCTTG+TGG 0.636416 8:-79380755 None:intergenic
TTGGAATATAGATAATATGA+GGG 0.640828 8:+79381643 MsG0880046876.01.T01:three_prime_UTR
TTGATGACGAGAAATTGGAA+GGG 0.641000 8:-79379753 None:intergenic
GTGATACGTTGGATCATTAG+GGG 0.645054 8:-79381772 None:intergenic
AAGCAATGGTCTGAATCTAA+GGG 0.645376 8:-79379675 None:intergenic
GGATACTCTGATAATTCTCG+AGG 0.647549 8:-79380821 None:intergenic
GTCCCTACAAATACCAACAA+GGG 0.653485 8:-79381544 None:intergenic
TCTGTTGCCTTCAACCCACA+AGG 0.654997 8:+79379794 MsG0880046876.01.T01:CDS
CCAATTTCTCGTCATCAACG+TGG 0.655284 8:+79379758 MsG0880046876.01.T01:CDS
AGTCCCTACAAATACCAACA+AGG 0.656259 8:-79381545 None:intergenic
TGAGATTAGCAGAAACACAA+GGG 0.657060 8:+79381843 MsG0880046876.01.T01:three_prime_UTR
GTGGTCCGCAATCGCAATTG+CGG 0.657993 8:-79381125 None:intergenic
GAGATTAGCAGAAACACAAG+GGG 0.695757 8:+79381844 MsG0880046876.01.T01:three_prime_UTR
AGATTAGCAGAAACACAAGG+GGG 0.811496 8:+79381845 MsG0880046876.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GACAAATGATATAAAAAAAA+AGG - Chr8:79379875-79379894 None:intergenic 15.0%
!! TTGAAATATCAATAATGTAA+GGG - Chr8:79381486-79381505 None:intergenic 15.0%
!!! AAGTTTTTATTGTATATTCA+TGG + Chr8:79381294-79381313 MsG0880046876.01.T01:CDS 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - Chr8:79381487-79381506 None:intergenic 15.0%
!! AAAGTGTAGAAACAAATTAA+TGG + Chr8:79379646-79379665 MsG0880046876.01.T01:exon 20.0%
!! ACTTTATATAGGAAATAAGA+GGG + Chr8:79381166-79381185 MsG0880046876.01.T01:intron 20.0%
!! ATATTATTTGCCTTTAATTC+AGG - Chr8:79381344-79381363 None:intergenic 20.0%
!! ATTGGAATATAGATAATATG+AGG + Chr8:79381642-79381661 MsG0880046876.01.T01:three_prime_UTR 20.0%
!! GAACTTATTATACTAAACAA+TGG + Chr8:79380480-79380499 MsG0880046876.01.T01:intron 20.0%
!! TAATTCTCTCTACATTTAAA+TGG + Chr8:79380458-79380477 MsG0880046876.01.T01:intron 20.0%
!! TACTTTATATAGGAAATAAG+AGG + Chr8:79381165-79381184 MsG0880046876.01.T01:intron 20.0%
!! TGAATTAAAGGCAAATAATA+TGG + Chr8:79381343-79381362 MsG0880046876.01.T01:CDS 20.0%
!! TGGAATTGAAAACAAATAAA+GGG + Chr8:79382041-79382060 MsG0880046876.01.T01:three_prime_UTR 20.0%
!! TTAGATAAAAGTCTTCAAAT+TGG - Chr8:79380057-79380076 None:intergenic 20.0%
!! TTCACTCATGAATATAAATT+TGG + Chr8:79382021-79382040 MsG0880046876.01.T01:three_prime_UTR 20.0%
!! TTGGAATATAGATAATATGA+GGG + Chr8:79381643-79381662 MsG0880046876.01.T01:three_prime_UTR 20.0%
!! TTGGAATTGAAAACAAATAA+AGG + Chr8:79382040-79382059 MsG0880046876.01.T01:three_prime_UTR 20.0%
!!! AAAAGATTAGTTCATTATGT+GGG + Chr8:79380219-79380238 MsG0880046876.01.T01:intron 20.0%
!!! AGTACTATGGTTTTAAATTA+CGG + Chr8:79380991-79381010 MsG0880046876.01.T01:intron 20.0%
!!! TGATATTAAGTTGGTAATAT+CGG + Chr8:79381572-79381591 MsG0880046876.01.T01:three_prime_UTR 20.0%
!!! TGTACTAACTTTTACAATAA+AGG - Chr8:79380311-79380330 None:intergenic 20.0%
!!! TGTCTTAATTGCTTTAATTT+TGG + Chr8:79380670-79380689 MsG0880046876.01.T01:intron 20.0%
!!! TTGAATTTTATTCCTGTATT+TGG + Chr8:79379996-79380015 MsG0880046876.01.T01:intron 20.0%
! AACTCAGTAGTACTTTATAT+AGG + Chr8:79381155-79381174 MsG0880046876.01.T01:intron 25.0%
! ACAATTTCAGGAATCAATTT+AGG - Chr8:79381446-79381465 None:intergenic 25.0%
! ATTAAGTCATAAGGTATGTT+GGG - Chr8:79380033-79380052 None:intergenic 25.0%
! ATTTATTGTATTACCTGATG+CGG - Chr8:79380953-79380972 None:intergenic 25.0%
! CAAATTGGTATTAAGTCATA+AGG - Chr8:79380042-79380061 None:intergenic 25.0%
! CTATATTCCAATACGATATA+TGG - Chr8:79381634-79381653 None:intergenic 25.0%
! GGAATAATTGAATAATGTCA+TGG + Chr8:79381594-79381613 MsG0880046876.01.T01:three_prime_UTR 25.0%
! TAACAATTACGGATTTCATT+GGG - Chr8:79380169-79380188 None:intergenic 25.0%
! TACTATAGTGTTAGATATGT+TGG + Chr8:79379961-79379980 MsG0880046876.01.T01:intron 25.0%
! TATCAATTACAACTTCGAAT+CGG - Chr8:79380554-79380573 None:intergenic 25.0%
! TATTAAGTCATAAGGTATGT+TGG - Chr8:79380034-79380053 None:intergenic 25.0%
! TTGCAGATGAATATGAAAAT+GGG + Chr8:79381228-79381247 MsG0880046876.01.T01:intron 25.0%
!! AAATTGATTCCTGAAATTGT+AGG + Chr8:79381446-79381465 MsG0880046876.01.T01:three_prime_UTR 25.0%
!! CAAAAGATTAGTTCATTATG+TGG + Chr8:79380218-79380237 MsG0880046876.01.T01:intron 25.0%
!! CTAAGGATTTGTTTACTTAT+TGG + Chr8:79381928-79381947 MsG0880046876.01.T01:three_prime_UTR 25.0%
!! GAAGACTTTTATCTAAATGT+GGG + Chr8:79380061-79380080 MsG0880046876.01.T01:intron 25.0%
!! TGAAGACTTTTATCTAAATG+TGG + Chr8:79380060-79380079 MsG0880046876.01.T01:intron 25.0%
!! TTTTACTACTGAGATAACTT+AGG - Chr8:79380382-79380401 None:intergenic 25.0%
!!! ACCTCTAAAATCTTTGTATT+AGG + Chr8:79381101-79381120 MsG0880046876.01.T01:intron 25.0%
!!! ATTGAGTTTTTGAAACTTGA+TGG + Chr8:79381890-79381909 MsG0880046876.01.T01:three_prime_UTR 25.0%
!!! CCTCTAAAATCTTTGTATTA+GGG + Chr8:79381102-79381121 MsG0880046876.01.T01:intron 25.0%
!!! GATATTAAGTTGGTAATATC+GGG + Chr8:79381573-79381592 MsG0880046876.01.T01:three_prime_UTR 25.0%
AATAATATGGCAAGAATGCT+TGG + Chr8:79381356-79381375 MsG0880046876.01.T01:CDS 30.0%
ACAAACCATAGTCTAATATC+AGG - Chr8:79380845-79380864 None:intergenic 30.0%
ACATGAACAATGCATATAGT+AGG - Chr8:79381963-79381982 None:intergenic 30.0%
AGTACTTTAATTCAGCCTAT+AGG + Chr8:79380121-79380140 MsG0880046876.01.T01:intron 30.0%
AGTATCCTGATATTAGACTA+TGG + Chr8:79380837-79380856 MsG0880046876.01.T01:CDS 30.0%
CAATGAAATCCGTAATTGTT+AGG + Chr8:79380168-79380187 MsG0880046876.01.T01:intron 30.0%
CTAACAATTACGGATTTCAT+TGG - Chr8:79380170-79380189 None:intergenic 30.0%
GGACTAGAATGATATTAAGT+TGG + Chr8:79381563-79381582 MsG0880046876.01.T01:three_prime_UTR 30.0%
GTTGCAGATGAATATGAAAA+TGG + Chr8:79381227-79381246 MsG0880046876.01.T01:intron 30.0%
TAATCAAATTTGTCCCTTGT+TGG + Chr8:79381531-79381550 MsG0880046876.01.T01:three_prime_UTR 30.0%
TTAAATTACGGTTGTGGTTA+TGG + Chr8:79381003-79381022 MsG0880046876.01.T01:intron 30.0%
TTGACTCAAAGTGAAAAAAG+TGG - Chr8:79380358-79380377 None:intergenic 30.0%
TTTGTGTATGAGTAGTACTA+TGG + Chr8:79380978-79380997 MsG0880046876.01.T01:intron 30.0%
! ATTTGCCTTTAATTCAGGTT+TGG - Chr8:79381339-79381358 None:intergenic 30.0%
! CCCTAATACAAAGATTTTAG+AGG - Chr8:79381105-79381124 None:intergenic 30.0%
! TTTGATAGTCCTACAATTTC+AGG - Chr8:79381458-79381477 None:intergenic 30.0%
! TTTGCCTTTAATTCAGGTTT+GGG - Chr8:79381338-79381357 None:intergenic 30.0%
!! GTCTCTTTATTTGATGATGA+TGG + Chr8:79379827-79379846 MsG0880046876.01.T01:CDS 30.0%
!!! ATGGTTTTAAATTACGGTTG+TGG + Chr8:79380997-79381016 MsG0880046876.01.T01:intron 30.0%
AAATGAACTTAGATGCTTCC+TGG + Chr8:79380710-79380729 MsG0880046876.01.T01:intron 35.0%
AAGCAATGGTCTGAATCTAA+GGG - Chr8:79379678-79379697 None:intergenic 35.0%
ACTCTTCGATCTATCATAGA+AGG + Chr8:79381714-79381733 MsG0880046876.01.T01:three_prime_UTR 35.0%
ACTGTAGTAATGATAACACC+AGG - Chr8:79380731-79380750 None:intergenic 35.0%
AGCTTCAGTCCTAACAATTA+CGG - Chr8:79380180-79380199 None:intergenic 35.0%
ATCTTGTCGTGTATAGTTGA+TGG - Chr8:79380792-79380811 None:intergenic 35.0%
ATGAGATTAGCAGAAACACA+AGG + Chr8:79381842-79381861 MsG0880046876.01.T01:three_prime_UTR 35.0%
CATTCCCAAACCTGAATTAA+AGG + Chr8:79381331-79381350 MsG0880046876.01.T01:CDS 35.0%
CTCTTCGATCTATCATAGAA+GGG + Chr8:79381715-79381734 MsG0880046876.01.T01:three_prime_UTR 35.0%
GAAACTGTATTAACCGTTTC+TGG + Chr8:79379616-79379635 MsG0880046876.01.T01:five_prime_UTR 35.0%
GCAAACATTCATCCAAATAC+AGG - Chr8:79380011-79380030 None:intergenic 35.0%
GGAAGTAATGTCATATGCTA+AGG + Chr8:79381911-79381930 MsG0880046876.01.T01:three_prime_UTR 35.0%
GGTATTTACTCTAGATCAAG+TGG - Chr8:79381425-79381444 None:intergenic 35.0%
TGAGATTAGCAGAAACACAA+GGG + Chr8:79381843-79381862 MsG0880046876.01.T01:three_prime_UTR 35.0%
TTGCGATCCATATATCGTAT+TGG + Chr8:79381624-79381643 MsG0880046876.01.T01:three_prime_UTR 35.0%
! AATGATTTGCGTACCAGATA+AGG - Chr8:79380637-79380656 None:intergenic 35.0%
! AGGTTAGAATTAGTCTCACA+AGG - Chr8:79380291-79380310 None:intergenic 35.0%
! AGTGTTAGATATGTTGGTCT+TGG + Chr8:79379967-79379986 MsG0880046876.01.T01:intron 35.0%
! ATGATTTGCGTACCAGATAA+GGG - Chr8:79380636-79380655 None:intergenic 35.0%
!! TACTACTGAGTTCTGAATTG+TGG - Chr8:79381147-79381166 None:intergenic 35.0%
!! TTGATGACGAGAAATTGGAA+GGG - Chr8:79379756-79379775 None:intergenic 35.0%
!!! AGAATGCTTGGTTTTGGAAT+TGG + Chr8:79381368-79381387 MsG0880046876.01.T01:CDS 35.0%
!!! TAAATGTGGGTTTTTTAGCC+TGG + Chr8:79380074-79380093 MsG0880046876.01.T01:intron 35.0%
!!! TTGTTTTAATCCAGAGGCAT+TGG + Chr8:79381253-79381272 MsG0880046876.01.T01:CDS 35.0%
AACGTATCACGAAGTGTATC+AGG + Chr8:79381785-79381804 MsG0880046876.01.T01:three_prime_UTR 40.0%
AGACATCGAAGTTTCCTTGT+GGG - Chr8:79379811-79379830 None:intergenic 40.0%
AGATTAGCAGAAACACAAGG+GGG + Chr8:79381845-79381864 MsG0880046876.01.T01:three_prime_UTR 40.0%
AGTCCCTACAAATACCAACA+AGG - Chr8:79381548-79381567 None:intergenic 40.0%
ATACAACCCTACAGCTTCAA+GGG + Chr8:79381675-79381694 MsG0880046876.01.T01:three_prime_UTR 40.0%
CCACAAAAATGGCTACCTAT+AGG - Chr8:79380139-79380158 None:intergenic 40.0%
CGTGATACGTTGGATCATTA+GGG - Chr8:79381776-79381795 None:intergenic 40.0%
CGTTATCACAATCGCAATTG+TGG - Chr8:79381073-79381092 None:intergenic 40.0%
CTTGAAAAGGGGTTAAGTCA+AGG - Chr8:79380593-79380612 None:intergenic 40.0%
GAAGCAATGGTCTGAATCTA+AGG - Chr8:79379679-79379698 None:intergenic 40.0%
GAATTTCTTGAGCGCTCAAT+TGG + Chr8:79380761-79380780 MsG0880046876.01.T01:CDS 40.0%
GAGATTAGCAGAAACACAAG+GGG + Chr8:79381844-79381863 MsG0880046876.01.T01:three_prime_UTR 40.0%
GCTCTCCAATCCAATAAAAC+TGG - Chr8:79380896-79380915 None:intergenic 40.0%
GGATACTCTGATAATTCTCG+AGG - Chr8:79380824-79380843 None:intergenic 40.0%
GGCATGAAAAATCCCTTATC+TGG + Chr8:79380621-79380640 MsG0880046876.01.T01:CDS 40.0%
GTCCCTACAAATACCAACAA+GGG - Chr8:79381547-79381566 None:intergenic 40.0%
GTCCCTTGTTGGTATTTGTA+GGG + Chr8:79381542-79381561 MsG0880046876.01.T01:three_prime_UTR 40.0%
GTGATACGTTGGATCATTAG+GGG - Chr8:79381775-79381794 None:intergenic 40.0%
TCCAATAAAACTGGCAACCA+TGG - Chr8:79380887-79380906 None:intergenic 40.0%
TCGTGATACGTTGGATCATT+AGG - Chr8:79381777-79381796 None:intergenic 40.0%
TGATACACTTCGTGATACGT+TGG - Chr8:79381786-79381805 None:intergenic 40.0%
TGTCCCTTGTTGGTATTTGT+AGG + Chr8:79381541-79381560 MsG0880046876.01.T01:three_prime_UTR 40.0%
TTTGGCAAAGGAGATGAAAG+TGG - Chr8:79379701-79379720 None:intergenic 40.0%
! AGGGAAAAGCATGAAGTTAG+AGG - Chr8:79379737-79379756 None:intergenic 40.0%
! ATGGCAAGAATGCTTGGTTT+TGG + Chr8:79381362-79381381 MsG0880046876.01.T01:CDS 40.0%
! ATTAAAGTACTCCACTCCAC+TGG - Chr8:79380112-79380131 None:intergenic 40.0%
! GGAAAAGCATGAAGTTAGAG+GGG - Chr8:79379735-79379754 None:intergenic 40.0%
! GGGAAAAGCATGAAGTTAGA+GGG - Chr8:79379736-79379755 None:intergenic 40.0%
!! GTTGATGACGAGAAATTGGA+AGG - Chr8:79379757-79379776 None:intergenic 40.0%
!! GTTTTATTGGATTGGAGAGC+TGG + Chr8:79380896-79380915 MsG0880046876.01.T01:CDS 40.0%
!! TCCATGGTTGCCAGTTTTAT+TGG + Chr8:79380883-79380902 MsG0880046876.01.T01:CDS 40.0%
!!! CCTATAGGTAGCCATTTTTG+TGG + Chr8:79380136-79380155 MsG0880046876.01.T01:intron 40.0%
!!! GAAGTGGTTTGTTTTGGCAA+AGG - Chr8:79379713-79379732 None:intergenic 40.0%
!!! GGTTGCCAGTTTTATTGGAT+TGG + Chr8:79380888-79380907 MsG0880046876.01.T01:CDS 40.0%
!!! TGGGAGTTGTTTTAATCCAG+AGG + Chr8:79381247-79381266 MsG0880046876.01.T01:CDS 40.0%
ACAAACAGTTCCAATGCCTC+TGG - Chr8:79381266-79381285 None:intergenic 45.0%
ACAGCTTCAAGGGCAAAACT+TGG + Chr8:79381685-79381704 MsG0880046876.01.T01:three_prime_UTR 45.0%
ATGCCAGTTGCAGCTTGAAA+AGG - Chr8:79380606-79380625 None:intergenic 45.0%
CACAAGGGGGTCATTAAGAA+CGG + Chr8:79381858-79381877 MsG0880046876.01.T01:three_prime_UTR 45.0%
CCAATTTCTCGTCATCAACG+TGG + Chr8:79379758-79379777 MsG0880046876.01.T01:CDS 45.0%
GAGACATCGAAGTTTCCTTG+TGG - Chr8:79379812-79379831 None:intergenic 45.0%
GAGCGCTCAAGAAATTCTTG+TGG - Chr8:79380758-79380777 None:intergenic 45.0%
GATACAACCCTACAGCTTCA+AGG + Chr8:79381674-79381693 MsG0880046876.01.T01:three_prime_UTR 45.0%
GGAGATGAAAGTGGAAGCAA+TGG - Chr8:79379692-79379711 None:intergenic 45.0%
TGCCAGTTGCAGCTTGAAAA+GGG - Chr8:79380605-79380624 None:intergenic 45.0%
TGCTATGTTAGTTCCGCATC+AGG + Chr8:79380937-79380956 MsG0880046876.01.T01:intron 45.0%
TGGGAATCGTGCCACAAAAA+TGG - Chr8:79380150-79380169 None:intergenic 45.0%
! AGTTTTGCCCTTGAAGCTGT+AGG - Chr8:79381685-79381704 None:intergenic 45.0%
! CACTTTTCAGCTGCCAGAAA+CGG - Chr8:79379632-79379651 None:intergenic 45.0%
! GAAGTTTCCTTGTGGGTTGA+AGG - Chr8:79379804-79379823 None:intergenic 45.0%
! GACTTGATGCTGCTTATCCA+TGG + Chr8:79380867-79380886 MsG0880046876.01.T01:CDS 45.0%
! GTTTTGCCCTTGAAGCTGTA+GGG - Chr8:79381684-79381703 None:intergenic 45.0%
!! CCACGTTGATGACGAGAAAT+TGG - Chr8:79379761-79379780 None:intergenic 45.0%
!!! AGAGGGGAAGTGGTTTGTTT+TGG - Chr8:79379719-79379738 None:intergenic 45.0%
!!! GTTTTTTAGCCTGGACTTGG+TGG + Chr8:79380083-79380102 MsG0880046876.01.T01:intron 45.0%
!!! TGGGTTTTTTAGCCTGGACT+TGG + Chr8:79380080-79380099 MsG0880046876.01.T01:intron 45.0%
AAGGGGGTCATTAAGAACGG+AGG + Chr8:79381861-79381880 MsG0880046876.01.T01:three_prime_UTR 50.0%
ACTTCGAATCGGCCTTCAGT+TGG - Chr8:79380543-79380562 None:intergenic 50.0%
GATAATTCTCGAGGATCGCG+AGG - Chr8:79380815-79380834 None:intergenic 50.0%
GCATGAAGTTAGAGGGGAAG+TGG - Chr8:79379729-79379748 None:intergenic 50.0%
GCCAGTTGCAGCTTGAAAAG+GGG - Chr8:79380604-79380623 None:intergenic 50.0%
TCTGTTGCCTTCAACCCACA+AGG + Chr8:79379794-79379813 MsG0880046876.01.T01:CDS 50.0%
!! ACCCCTTTTCAAGCTGCAAC+TGG + Chr8:79380600-79380619 MsG0880046876.01.T01:CDS 50.0%
CACTGGATACCACCAAGTCC+AGG - Chr8:79380095-79380114 None:intergenic 55.0%
CCTCCTATGCCTCCAACTGA+AGG + Chr8:79380528-79380547 MsG0880046876.01.T01:CDS 55.0%
GTGGTCCGCAATCGCAATTG+CGG - Chr8:79381128-79381147 None:intergenic 55.0%
TAGGGCCGCAATTGCGATTG+CGG + Chr8:79381120-79381139 MsG0880046876.01.T01:intron 55.0%
TCGAATCGGCCTTCAGTTGG+AGG - Chr8:79380540-79380559 None:intergenic 55.0%
! CCTTCAGTTGGAGGCATAGG+AGG - Chr8:79380531-79380550 None:intergenic 55.0%
! CTTGGTGGTATCCAGTGGAG+TGG + Chr8:79380098-79380117 MsG0880046876.01.T01:intron 55.0%
!! CTGGACTTGGTGGTATCCAG+TGG + Chr8:79380093-79380112 MsG0880046876.01.T01:intron 55.0%
GGAGAGCTGGAGAGCTAGCT+CGG + Chr8:79380909-79380928 MsG0880046876.01.T01:CDS 60.0%
! CGGCCTTCAGTTGGAGGCAT+AGG - Chr8:79380534-79380553 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 79379594 79382089 79379594 ID=MsG0880046876.01;Name=MsG0880046876.01
Chr8 mRNA 79379594 79382089 79379594 ID=MsG0880046876.01.T01;Parent=MsG0880046876.01;Name=MsG0880046876.01.T01;_AED=0.23;_eAED=0.25;_QI=71|0.5|0.6|1|0.5|0.4|5|650|247
Chr8 exon 79379594 79379848 79379594 ID=MsG0880046876.01.T01:exon:34325;Parent=MsG0880046876.01.T01
Chr8 exon 79380511 79380642 79380511 ID=MsG0880046876.01.T01:exon:34326;Parent=MsG0880046876.01.T01
Chr8 exon 79380750 79380930 79380750 ID=MsG0880046876.01.T01:exon:34327;Parent=MsG0880046876.01.T01
Chr8 exon 79381123 79381163 79381123 ID=MsG0880046876.01.T01:exon:34328;Parent=MsG0880046876.01.T01
Chr8 exon 79381234 79382089 79381234 ID=MsG0880046876.01.T01:exon:34329;Parent=MsG0880046876.01.T01
Chr8 five_prime_UTR 79379594 79379664 79379594 ID=MsG0880046876.01.T01:five_prime_utr;Parent=MsG0880046876.01.T01
Chr8 CDS 79379665 79379848 79379665 ID=MsG0880046876.01.T01:cds;Parent=MsG0880046876.01.T01
Chr8 CDS 79380511 79380642 79380511 ID=MsG0880046876.01.T01:cds;Parent=MsG0880046876.01.T01
Chr8 CDS 79380750 79380930 79380750 ID=MsG0880046876.01.T01:cds;Parent=MsG0880046876.01.T01
Chr8 CDS 79381123 79381163 79381123 ID=MsG0880046876.01.T01:cds;Parent=MsG0880046876.01.T01
Chr8 CDS 79381234 79381439 79381234 ID=MsG0880046876.01.T01:cds;Parent=MsG0880046876.01.T01
Chr8 three_prime_UTR 79381440 79382089 79381440 ID=MsG0880046876.01.T01:three_prime_utr;Parent=MsG0880046876.01.T01
Gene Sequence

>MsG0880046876.01.T01

ATGGCTACTACCCTTAGATTCAGACCATTGCTTCCACTTTCATCTCCTTTGCCAAAACAAACCACTTCCCCTCTAACTTCATGCTTTTCCCTTCCAATTTCTCGTCATCAACGTGGAAATGTTGCAGTCTCTGTTGCCTTCAACCCACAAGGAAACTTCGATGTCTCTTTATTTGATGATGATGATGAGTCTAAAGTTTCACCTCCTATGCCTCCAACTGAAGGCCGATTCGAAGTTGTAATTGATAATGATGCTATTAGTCGCCTTGACTTAACCCCTTTTCAAGCTGCAACTGGCATGAAAAATCCCTTATCTGTTGAACCACAAGAATTTCTTGAGCGCTCAATTGGATTTACCATCAACTATACACGACAAGATCCTCGCGATCCTCGAGAATTATCAGAGTATCCTGATATTAGACTATGGTTTGTTAGACTTGATGCTGCTTATCCATGGTTGCCAGTTTTATTGGATTGGAGAGCTGGAGAGCTAGCTCGGGCCGCAATTGCGATTGCGGACCACAATTCAGAACTCAGTAATGAATATGAAAATGGGAGTTGTTTTAATCCAGAGGCATTGGAACTGTTTGTTATGAATAAAGTTTTTATTGTATATTCATGGTTGAAGCATCACAACATTCCCAAACCTGAATTAAAGGCAAATAATATGGCAAGAATGCTTGGTTTTGGAATTGGAAGTGAACTATACGACTTAGTTGAGAATCATCCACTTGATCTAGAGTAA

Protein sequence

>MsG0880046876.01.T01

MATTLRFRPLLPLSSPLPKQTTSPLTSCFSLPISRHQRGNVAVSVAFNPQGNFDVSLFDDDDESKVSPPMPPTEGRFEVVIDNDAISRLDLTPFQAATGMKNPLSVEPQEFLERSIGFTINYTRQDPRDPRELSEYPDIRLWFVRLDAAYPWLPVLLDWRAGELARAAIAIADHNSELSNEYENGSCFNPEALELFVMNKVFIVYSWLKHHNIPKPELKANNMARMLGFGIGSELYDLVENHPLDLE*