AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018494.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018494.01.T02 MTR_4g013200 97.945 146 2 1 1 145 1 146 3.16e-98 279
MsG0480018494.01.T02 MTR_8g024180 42.276 123 68 2 25 144 46 168 3.00e-26 97.4
MsG0480018494.01.T02 MTR_7g118290 35.664 143 84 1 10 144 35 177 3.69e-26 97.4
MsG0480018494.01.T02 MTR_5g032440 45.333 75 41 0 71 145 108 182 7.81e-18 75.9
MsG0480018494.01.T02 MTR_7g116795 31.783 129 72 1 32 144 31 159 7.23e-16 70.5
MsG0480018494.01.T02 MTR_7g118290 27.273 143 75 2 10 144 35 156 9.46e-13 62.4
MsG0480018494.01.T01 MTR_4g013200 97.945 146 2 1 1 145 1 146 3.16e-98 279
MsG0480018494.01.T01 MTR_8g024180 42.276 123 68 2 25 144 46 168 3.00e-26 97.4
MsG0480018494.01.T01 MTR_7g118290 35.664 143 84 1 10 144 35 177 3.69e-26 97.4
MsG0480018494.01.T01 MTR_5g032440 45.333 75 41 0 71 145 108 182 7.81e-18 75.9
MsG0480018494.01.T01 MTR_7g116795 31.783 129 72 1 32 144 31 159 7.23e-16 70.5
MsG0480018494.01.T01 MTR_7g118290 27.273 143 75 2 10 144 35 156 9.46e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018494.01.T02 AT1G52220 60.897 156 50 1 1 145 1 156 7.15e-59 180
MsG0480018494.01.T02 AT1G52220 60.256 156 50 2 1 145 1 155 1.63e-56 174
MsG0480018494.01.T02 AT1G52220 52.448 143 51 3 1 126 1 143 4.92e-39 129
MsG0480018494.01.T02 AT1G52220 46.154 156 44 2 1 145 1 127 4.91e-34 115
MsG0480018494.01.T02 AT2G46820 49.425 87 44 0 58 144 86 172 1.49e-27 100
MsG0480018494.01.T02 AT2G46820 49.425 87 44 0 58 144 86 172 1.49e-27 100
MsG0480018494.01.T02 AT4G01150 33.663 101 67 0 44 144 62 162 1.38e-16 72.4
MsG0480018494.01.T02 AT4G38100 37.143 70 42 1 75 144 122 189 6.32e-12 60.8
MsG0480018494.01.T02 AT4G38100 37.143 70 42 1 75 144 82 149 6.89e-12 59.7
MsG0480018494.01.T01 AT1G52220 60.897 156 50 1 1 145 1 156 7.15e-59 180
MsG0480018494.01.T01 AT1G52220 60.256 156 50 2 1 145 1 155 1.63e-56 174
MsG0480018494.01.T01 AT1G52220 52.448 143 51 3 1 126 1 143 4.92e-39 129
MsG0480018494.01.T01 AT1G52220 46.154 156 44 2 1 145 1 127 4.91e-34 115
MsG0480018494.01.T01 AT2G46820 49.425 87 44 0 58 144 86 172 1.49e-27 100
MsG0480018494.01.T01 AT2G46820 49.425 87 44 0 58 144 86 172 1.49e-27 100
MsG0480018494.01.T01 AT4G01150 33.663 101 67 0 44 144 62 162 1.38e-16 72.4
MsG0480018494.01.T01 AT4G38100 37.143 70 42 1 75 144 122 189 6.32e-12 60.8
MsG0480018494.01.T01 AT4G38100 37.143 70 42 1 75 144 82 149 6.89e-12 59.7

Find 6 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATACTAACAAGAATTAAA+AGG 0.351465 4:-5769458 None:intergenic
CCTTTGGGTTGCTCTACTGC+TGG 0.463016 4:-5769393 None:intergenic
CAGCAGTAGAGCAACCCAAA+GGG 0.540980 4:+5769394 MsG0480018494.01.T01:five_prime_UTR
CCAGCAGTAGAGCAACCCAA+AGG 0.624055 4:+5769393 MsG0480018494.01.T01:five_prime_UTR
AGCAGTAGAGCAACCCAAAG+GGG 0.686258 4:+5769395 MsG0480018494.01.T01:five_prime_UTR
ACTGCTGGAAATGATGAGTG+AGG 0.708064 4:-5769378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTCTTAATTATTAT+CGG + Chr4:5769961-5769980 MsG0480018494.01.T01:intron 10.0%
!! AAAAAAAATCAAAATCAGAA+TGG - Chr4:5771022-5771041 None:intergenic 15.0%
!!! AAGTATTGAAGAAAAAAATA+TGG - Chr4:5771180-5771199 None:intergenic 15.0%
!!! AATAAATAGTTTTTTGTCAA+GGG + Chr4:5771798-5771817 MsG0480018494.01.T01:intron 15.0%
!!! ATTATAGTTTCTCTAATTTT+TGG - Chr4:5771301-5771320 None:intergenic 15.0%
!!! TTATATCATTGACTTAAATT+TGG + Chr4:5769483-5769502 MsG0480018494.01.T01:intron 15.0%
!!! TTTCTTTTCTTTAATTACTA+TGG - Chr4:5771639-5771658 None:intergenic 15.0%
!! AAACTTAACTTATTTAGTCA+AGG - Chr4:5772578-5772597 None:intergenic 20.0%
!! AACTGAGAAGATATAAATAA+GGG - Chr4:5771958-5771977 None:intergenic 20.0%
!! AAGTATGACATTGTTTAAAA+CGG + Chr4:5769862-5769881 MsG0480018494.01.T01:intron 20.0%
!! AGATACTAACAAGAATTAAA+AGG - Chr4:5769461-5769480 None:intergenic 20.0%
!! TAAATAAGGGAAAAATATAG+TGG - Chr4:5771945-5771964 None:intergenic 20.0%
!! TGCTTGAACTAATTAAAAAT+TGG + Chr4:5770067-5770086 MsG0480018494.01.T01:intron 20.0%
!! TTGAACTAATTAAAAATTGG+CGG + Chr4:5770070-5770089 MsG0480018494.01.T01:intron 20.0%
!!! AAAAATGAGATTAAGTTGTA+AGG - Chr4:5770944-5770963 None:intergenic 20.0%
!!! ATTATATATTTTGAACTCAC+TGG + Chr4:5770968-5770987 MsG0480018494.01.T01:intron 20.0%
!!! GAATAAATAGTTTTTTGTCA+AGG + Chr4:5771797-5771816 MsG0480018494.01.T01:intron 20.0%
! AAATAAAACAATACCCCTTT+GGG - Chr4:5769411-5769430 None:intergenic 25.0%
! AAATCAACTTCAGATATCTT+GGG + Chr4:5772288-5772307 MsG0480018494.01.T01:CDS 25.0%
! AAATTCTACAATGACGAATT+CGG - Chr4:5770855-5770874 None:intergenic 25.0%
! ATCAACTGTACAAAATTTCA+GGG - Chr4:5770328-5770347 None:intergenic 25.0%
! CTTAATAGTTAATCAGATGA+AGG - Chr4:5772642-5772661 None:intergenic 25.0%
! GAACTGAGAAGATATAAATA+AGG - Chr4:5771959-5771978 None:intergenic 25.0%
! TAAAAAAAGACGAAAACGAT+GGG - Chr4:5770663-5770682 None:intergenic 25.0%
! TGCAAAAACAAAAACAAAGT+CGG - Chr4:5771360-5771379 None:intergenic 25.0%
! TTAAAAAAAGACGAAAACGA+TGG - Chr4:5770664-5770683 None:intergenic 25.0%
! TTCTTTAATTACTATGGCTA+TGG - Chr4:5771633-5771652 None:intergenic 25.0%
! TTTATTCTATACAACATGTG+AGG - Chr4:5772093-5772112 None:intergenic 25.0%
! TTTGTTGATGTTTAAACAGT+GGG + Chr4:5770714-5770733 MsG0480018494.01.T01:intron 25.0%
!! AATTTCTTTTTCTGTTTCAG+TGG + Chr4:5771437-5771456 MsG0480018494.01.T01:intron 25.0%
!! AGTATGACATTGTTTAAAAC+GGG + Chr4:5769863-5769882 MsG0480018494.01.T01:intron 25.0%
!! TCACATGCAACATTTTTAAT+TGG - Chr4:5770372-5770391 None:intergenic 25.0%
!! TGAATATTTTCTTGATTGCA+GGG + Chr4:5772242-5772261 MsG0480018494.01.T01:intron 25.0%
!! TTGAATATTTTCTTGATTGC+AGG + Chr4:5772241-5772260 MsG0480018494.01.T01:intron 25.0%
!! TTTTCAACTTTTGTACACAA+AGG - Chr4:5772449-5772468 None:intergenic 25.0%
!! TTTTTCTCTCACTAGTTATT+TGG - Chr4:5771879-5771898 None:intergenic 25.0%
!!! AAAGAGCAAATTTTAGTTCA+TGG - Chr4:5769513-5769532 None:intergenic 25.0%
!!! AAGTTGATTTGTTCAAGATT+TGG - Chr4:5772278-5772297 None:intergenic 25.0%
!!! CACATTCTAGAGTAAAATTT+CGG - Chr4:5772330-5772349 None:intergenic 25.0%
!!! GCTTATATCATTGACTTAAA+TGG + Chr4:5769603-5769622 MsG0480018494.01.T01:intron 25.0%
!!! TGATTTTAAAGTTCACTTGT+TGG + Chr4:5772161-5772180 MsG0480018494.01.T01:intron 25.0%
!!! TTGTTTTTGTTTTTGCAAGA+GGG + Chr4:5771363-5771382 MsG0480018494.01.T01:intron 25.0%
!!! TTTCTCTAATTTTTGGAACA+GGG - Chr4:5771294-5771313 None:intergenic 25.0%
!!! TTTGTTTTTGTTTTTGCAAG+AGG + Chr4:5771362-5771381 MsG0480018494.01.T01:intron 25.0%
AAAAAGAACAAAGCCAGTAA+AGG - Chr4:5769730-5769749 None:intergenic 30.0%
AAAAGAACAAAGCCAGTAAA+GGG - Chr4:5769729-5769748 None:intergenic 30.0%
ACAAAGTAATCTCACTGTTA+AGG - Chr4:5772616-5772635 None:intergenic 30.0%
ACATCAACAAACAGAAACTT+AGG - Chr4:5770705-5770724 None:intergenic 30.0%
AGGGAGATATAAACATTTGT+AGG - Chr4:5770489-5770508 None:intergenic 30.0%
AGTGGAAGTAATCAAATCAA+TGG - Chr4:5770452-5770471 None:intergenic 30.0%
ATTTCTCTCAAACCAATCAA+AGG - Chr4:5771695-5771714 None:intergenic 30.0%
CAAATCAACTTCAGATATCT+TGG + Chr4:5772287-5772306 MsG0480018494.01.T01:CDS 30.0%
CATCAACTGTACAAAATTTC+AGG - Chr4:5770329-5770348 None:intergenic 30.0%
GAAAGTGATATAATGCTTAC+CGG - Chr4:5771495-5771514 None:intergenic 30.0%
GAAATAAAACAATACCCCTT+TGG - Chr4:5769412-5769431 None:intergenic 30.0%
TCAACTGTACAAAATTTCAG+GGG - Chr4:5770327-5770346 None:intergenic 30.0%
TCACAGTAAATCTCATTCTA+AGG - Chr4:5772144-5772163 None:intergenic 30.0%
TGCTAATGACTAACAAGTTA+TGG - Chr4:5772120-5772139 None:intergenic 30.0%
TTCTCTGTGATATTGTGTAT+AGG + Chr4:5771040-5771059 MsG0480018494.01.T01:intron 30.0%
TTTCTCTCAAACCAATCAAA+GGG - Chr4:5771694-5771713 None:intergenic 30.0%
TTTGCACTGTAATTTGACAT+AGG - Chr4:5772390-5772409 None:intergenic 30.0%
! AAGAGAGTGTAAAGAGATAA+AGG - Chr4:5771851-5771870 None:intergenic 30.0%
! ATTCCTGATTTTCAATCACA+GGG + Chr4:5770520-5770539 MsG0480018494.01.T01:intron 30.0%
! GAAGAGAAACAGAGAAATTT+TGG - Chr4:5769696-5769715 None:intergenic 30.0%
! GTATGACATTGTTTAAAACG+GGG + Chr4:5769864-5769883 MsG0480018494.01.T01:intron 30.0%
! GTTTGTTGATGTTTAAACAG+TGG + Chr4:5770713-5770732 MsG0480018494.01.T01:intron 30.0%
!! AGAATTTTAACCGAACGATA+AGG + Chr4:5770868-5770887 MsG0480018494.01.T01:intron 30.0%
!! GATGAATTGATGGATTGATT+TGG + Chr4:5771390-5771409 MsG0480018494.01.T01:intron 30.0%
!! TGAAAAGTTTGCTATGTTGT+GGG - Chr4:5772547-5772566 None:intergenic 30.0%
!! TTTTAAGTGCAGATTATCAG+TGG + Chr4:5772351-5772370 MsG0480018494.01.T01:three_prime_UTR 30.0%
!!! ACCATGTTTTTTTACACAAG+TGG + Chr4:5770169-5770188 MsG0480018494.01.T01:intron 30.0%
!!! GTTTCTCTAATTTTTGGAAC+AGG - Chr4:5771295-5771314 None:intergenic 30.0%
!!! TTCTCTAATTTTTGGAACAG+GGG - Chr4:5771293-5771312 None:intergenic 30.0%
AGTACCAAACTTCTTCTCAT+TGG + Chr4:5771748-5771767 MsG0480018494.01.T01:intron 35.0%
ATAGTTAGTTCAAGCACCAA+GGG - Chr4:5770264-5770283 None:intergenic 35.0%
ATCAGGAATCAGGAACATTT+AGG - Chr4:5770509-5770528 None:intergenic 35.0%
ATGTGTATACTCATGTCATG+AGG + Chr4:5771144-5771163 MsG0480018494.01.T01:intron 35.0%
CAACTGTACAAAATTTCAGG+GGG - Chr4:5770326-5770345 None:intergenic 35.0%
CCAAACATAACCTTATCGTT+CGG - Chr4:5770881-5770900 None:intergenic 35.0%
CGAACGATAAGGTTATGTTT+GGG + Chr4:5770879-5770898 MsG0480018494.01.T01:intron 35.0%
CTTGAATAAGAGATAGCGAT+AGG - Chr4:5771467-5771486 None:intergenic 35.0%
GATAACTGGCAATTTGTCAA+TGG - Chr4:5771066-5771085 None:intergenic 35.0%
GCCACTTGTGTAAAAAAACA+TGG - Chr4:5770173-5770192 None:intergenic 35.0%
GCTCACAAGTGAGATTTATT+TGG - Chr4:5771250-5771269 None:intergenic 35.0%
GGATCAATCAAGTGAGAAAT+AGG - Chr4:5771662-5771681 None:intergenic 35.0%
GGCATCAACAAATTTGATAG+CGG + Chr4:5770798-5770817 MsG0480018494.01.T01:CDS 35.0%
GTGATTGAAAATCAGGAATC+AGG - Chr4:5770519-5770538 None:intergenic 35.0%
GTGATTTCATTATTGAAGCG+AGG + Chr4:5771568-5771587 MsG0480018494.01.T01:intron 35.0%
GTTCCAAAATAGTGCAAGAT+TGG - Chr4:5770833-5770852 None:intergenic 35.0%
TATACAACATGTGAGGCAAA+TGG - Chr4:5772086-5772105 None:intergenic 35.0%
TATAGTTAGTTCAAGCACCA+AGG - Chr4:5770265-5770284 None:intergenic 35.0%
TCAGGAATCAGGAACATTTA+GGG - Chr4:5770508-5770527 None:intergenic 35.0%
TGTTTGTGTTAGTGCTTCAT+AGG + Chr4:5769995-5770014 MsG0480018494.01.T01:intron 35.0%
! ACACTCTTTTCAACATTTGG+AGG + Chr4:5771981-5772000 MsG0480018494.01.T01:intron 35.0%
! ATAAGGTTATGTTTGGGACA+TGG + Chr4:5770885-5770904 MsG0480018494.01.T01:intron 35.0%
! ATGAAGCACTAACACAAACA+CGG - Chr4:5769995-5770014 None:intergenic 35.0%
! ATTTCAGGGGGCATATATTA+TGG - Chr4:5770314-5770333 None:intergenic 35.0%
! CTCACACTCTTTTCAACATT+TGG + Chr4:5771978-5771997 MsG0480018494.01.T01:intron 35.0%
! GATTCCTGATTTTCAATCAC+AGG + Chr4:5770519-5770538 MsG0480018494.01.T01:intron 35.0%
! GATTGGAATACTTTTCTCAG+TGG + Chr4:5771103-5771122 MsG0480018494.01.T01:CDS 35.0%
! TAAGGTTATGTTTGGGACAT+GGG + Chr4:5770886-5770905 MsG0480018494.01.T01:intron 35.0%
! TCACCAATCTTGCACTATTT+TGG + Chr4:5770827-5770846 MsG0480018494.01.T01:intron 35.0%
! TTTGGGACATGGGTTTATAA+GGG + Chr4:5770896-5770915 MsG0480018494.01.T01:intron 35.0%
!! GTGAAAAGTTTGCTATGTTG+TGG - Chr4:5772548-5772567 None:intergenic 35.0%
!! TAACGTTCCATTTGTTGTGA+AGG + Chr4:5770551-5770570 MsG0480018494.01.T01:CDS 35.0%
AACTGTTTCCAAACCAACCT+AGG - Chr4:5772038-5772057 None:intergenic 40.0%
ACATGGGTTTATAAGGGGAA+GGG + Chr4:5770902-5770921 MsG0480018494.01.T01:intron 40.0%
ACTGTTTCCAAACCAACCTA+GGG - Chr4:5772037-5772056 None:intergenic 40.0%
AGAGGGACTTGATGAATTGA+TGG + Chr4:5771380-5771399 MsG0480018494.01.T01:intron 40.0%
ATCTCTTATTCAAGCCTGAC+CGG + Chr4:5771473-5771492 MsG0480018494.01.T01:CDS 40.0%
ATGCCAGAAACTCATTTCCA+GGG + Chr4:5769665-5769684 MsG0480018494.01.T01:CDS 40.0%
CAATCAGTTCCAACGAAATC+GGG - Chr4:5771088-5771107 None:intergenic 40.0%
CCAATCAAAGGGTCATTAAC+AGG - Chr4:5771683-5771702 None:intergenic 40.0%
CCAATCAGTTCCAACGAAAT+CGG - Chr4:5771089-5771108 None:intergenic 40.0%
CCGAACGATAAGGTTATGTT+TGG + Chr4:5770878-5770897 MsG0480018494.01.T01:intron 40.0%
CCTGTTAATGACCCTTTGAT+TGG + Chr4:5771680-5771699 MsG0480018494.01.T01:intron 40.0%
GCAACCAATGAGAAGAAGTT+TGG - Chr4:5771755-5771774 None:intergenic 40.0%
GTAGCTAACATCAGACAAAC+TGG - Chr4:5771525-5771544 None:intergenic 40.0%
GTGTCAAAAACCTATGCATG+CGG + Chr4:5769923-5769942 MsG0480018494.01.T01:intron 40.0%
TAAACAGTGGGATAAACCTG+AGG + Chr4:5770726-5770745 MsG0480018494.01.T01:intron 40.0%
TAGTTAGTTCAAGCACCAAG+GGG - Chr4:5770263-5770282 None:intergenic 40.0%
TCTCCCTGTGATTGAAAATC+AGG - Chr4:5770526-5770545 None:intergenic 40.0%
TGATATAATGCTTACCGGTC+AGG - Chr4:5771490-5771509 None:intergenic 40.0%
TGATGAGCAATGCACTAGTT+TGG + Chr4:5770344-5770363 MsG0480018494.01.T01:intron 40.0%
TGATTACTTCCACTTTCTGC+TGG + Chr4:5770458-5770477 MsG0480018494.01.T01:intron 40.0%
TGTGCTATACACCAAATGGT+GGG - Chr4:5770142-5770161 None:intergenic 40.0%
TTAAATGTAGCCGCATGCAT+AGG - Chr4:5769936-5769955 None:intergenic 40.0%
TTGGGACATGGGTTTATAAG+GGG + Chr4:5770897-5770916 MsG0480018494.01.T01:intron 40.0%
! GATTTTCAATCACAGGGAGA+CGG + Chr4:5770526-5770545 MsG0480018494.01.T01:intron 40.0%
! GTTTGGGACATGGGTTTATA+AGG + Chr4:5770895-5770914 MsG0480018494.01.T01:intron 40.0%
! TATGTGGGAGCTTTATGCAT+GGG - Chr4:5770111-5770130 None:intergenic 40.0%
! TGCTCATTTTCGAACTTCAG+TGG + Chr4:5770420-5770439 MsG0480018494.01.T01:intron 40.0%
! TGGTTTGGAAACAGTTGCAT+TGG + Chr4:5772042-5772061 MsG0480018494.01.T01:intron 40.0%
! TTCTCTGTTTCTCTTCTTCC+AGG + Chr4:5769700-5769719 MsG0480018494.01.T01:CDS 40.0%
!! CTGGTTTGGAATCGATTATG+AGG - Chr4:5772007-5772026 None:intergenic 40.0%
!! GAGAAATTTTGGAAGTTCCC+TGG - Chr4:5769685-5769704 None:intergenic 40.0%
AAAGACGAAAACGATGGGAG+TGG - Chr4:5770658-5770677 None:intergenic 45.0%
AAAGCCAGTAAAGGGTTACC+TGG - Chr4:5769721-5769740 None:intergenic 45.0%
AACAGTCACGAGTTCAAGTC+TGG - Chr4:5770201-5770220 None:intergenic 45.0%
ACTGCTGGAAATGATGAGTG+AGG - Chr4:5769381-5769400 None:intergenic 45.0%
AGTTAGTTCAAGCACCAAGG+GGG - Chr4:5770262-5770281 None:intergenic 45.0%
ATACACAGAGTCCCACCATT+TGG + Chr4:5770128-5770147 MsG0480018494.01.T01:intron 45.0%
ATTTCGGCAGCACATCTTAC+TGG - Chr4:5772314-5772333 None:intergenic 45.0%
CATGCCAGAAACTCATTTCC+AGG + Chr4:5769664-5769683 MsG0480018494.01.T01:CDS 45.0%
CCAAACCAAATAGTCCCAAC+CGG - Chr4:5770753-5770772 None:intergenic 45.0%
CCAGAAGCCTTCACAACAAA+TGG - Chr4:5770561-5770580 None:intergenic 45.0%
CCGATTTCGTTGGAACTGAT+TGG + Chr4:5771086-5771105 MsG0480018494.01.T01:CDS 45.0%
CTGTTTCCAAACCAACCTAG+GGG - Chr4:5772036-5772055 None:intergenic 45.0%
GACACAAGCTTGCATGTGTA+GGG - Chr4:5770045-5770064 None:intergenic 45.0%
GACATGGGTTTATAAGGGGA+AGG + Chr4:5770901-5770920 MsG0480018494.01.T01:intron 45.0%
GCTGTGTGCTATACACCAAA+TGG - Chr4:5770146-5770165 None:intergenic 45.0%
GTGTGCTATACACCAAATGG+TGG - Chr4:5770143-5770162 None:intergenic 45.0%
GTTCCCTGGAAATGAGTTTC+TGG - Chr4:5769671-5769690 None:intergenic 45.0%
TCCAACGAAATCGGGATAAC+TGG - Chr4:5771080-5771099 None:intergenic 45.0%
TCTTCCAGGTAACCCTTTAC+TGG + Chr4:5769714-5769733 MsG0480018494.01.T01:intron 45.0%
TGACACAAGCTTGCATGTGT+AGG - Chr4:5770046-5770065 None:intergenic 45.0%
TGCAGCTGTAGTAGCACTTT+GGG + Chr4:5770777-5770796 MsG0480018494.01.T01:CDS 45.0%
TGGTGGCAAGCTTGCAATAA+TGG - Chr4:5769632-5769651 None:intergenic 45.0%
TTGCAGCTGTAGTAGCACTT+TGG + Chr4:5770776-5770795 MsG0480018494.01.T01:CDS 45.0%
! ATGTGGGAGCTTTATGCATG+GGG - Chr4:5770110-5770129 None:intergenic 45.0%
! CGGTTGGGACTATTTGGTTT+GGG + Chr4:5770751-5770770 MsG0480018494.01.T01:CDS 45.0%
! CTTCTCATTGGTTGCAAGAG+AGG + Chr4:5771760-5771779 MsG0480018494.01.T01:intron 45.0%
! GTATGTGGGAGCTTTATGCA+TGG - Chr4:5770112-5770131 None:intergenic 45.0%
! TTTCTGGCATGGAGCAACAA+TGG - Chr4:5769655-5769674 None:intergenic 45.0%
!! AAGATTCCCCTAGGTTGGTT+TGG + Chr4:5772027-5772046 MsG0480018494.01.T01:intron 45.0%
!! CCATTTGTTGTGAAGGCTTC+TGG + Chr4:5770558-5770577 MsG0480018494.01.T01:CDS 45.0%
!! CTGGAAATGAGTTTCTGGCA+TGG - Chr4:5769666-5769685 None:intergenic 45.0%
!!! AATAATCTAAAATTAAATTA+AGG - Chr4:5769438-5769457 None:intergenic 5.0%
AAGGGGAAGGGAAGAGCTTA+TGG + Chr4:5770914-5770933 MsG0480018494.01.T01:intron 50.0%
ACCAACCTAGGGGAATCTTC+TGG - Chr4:5772026-5772045 None:intergenic 50.0%
ACCAGAAGATTCCCCTAGGT+TGG + Chr4:5772022-5772041 MsG0480018494.01.T01:intron 50.0%
ACGAAAACGATGGGAGTGGT+AGG - Chr4:5770654-5770673 None:intergenic 50.0%
AGCAGTAGAGCAACCCAAAG+GGG + Chr4:5769395-5769414 MsG0480018494.01.T01:five_prime_UTR 50.0%
AGTGGGATAAACCTGAGGAC+CGG + Chr4:5770731-5770750 MsG0480018494.01.T01:intron 50.0%
CAGCAGTAGAGCAACCCAAA+GGG + Chr4:5769394-5769413 MsG0480018494.01.T01:five_prime_UTR 50.0%
CCAAACCAGAAGATTCCCCT+AGG + Chr4:5772018-5772037 MsG0480018494.01.T01:intron 50.0%
CCGGTTGGGACTATTTGGTT+TGG + Chr4:5770750-5770769 MsG0480018494.01.T01:CDS 50.0%
GATAAACCTGAGGACCGGTT+GGG + Chr4:5770736-5770755 MsG0480018494.01.T01:CDS 50.0%
GCCAGTTATCCCGATTTCGT+TGG + Chr4:5771076-5771095 MsG0480018494.01.T01:CDS 50.0%
TAGGACACACCAGCAGAAAG+TGG - Chr4:5770470-5770489 None:intergenic 50.0%
TGGTGGGACTCTGTGTATGT+GGG - Chr4:5770126-5770145 None:intergenic 50.0%
! ATGGTGGGACTCTGTGTATG+TGG - Chr4:5770127-5770146 None:intergenic 50.0%
! CCTAGGGGAATCTTCTGGTT+TGG - Chr4:5772021-5772040 None:intergenic 50.0%
AATAGTCCCAACCGGTCCTC+AGG - Chr4:5770745-5770764 None:intergenic 55.0%
CCAGCAGTAGAGCAACCCAA+AGG + Chr4:5769393-5769412 MsG0480018494.01.T01:five_prime_UTR 55.0%
CTGGCATGGAGCAACAATGG+TGG - Chr4:5769652-5769671 None:intergenic 55.0%
GAGGACCGGTTGGGACTATT+TGG + Chr4:5770745-5770764 MsG0480018494.01.T01:CDS 55.0%
GCATGGAGCAACAATGGTGG+TGG - Chr4:5769649-5769668 None:intergenic 55.0%
GGATAAACCTGAGGACCGGT+TGG + Chr4:5770735-5770754 MsG0480018494.01.T01:CDS 55.0%
TATGCATGGGGCTGTGTGCA+CGG - Chr4:5770098-5770117 None:intergenic 55.0%
!! CCTTTGGGTTGCTCTACTGC+TGG - Chr4:5769396-5769415 None:intergenic 55.0%
ACAACTTTACCGCCGCGCCA+AGG + Chr4:5770234-5770253 MsG0480018494.01.T01:intron 60.0%
ATGCATGGGGCTGTGTGCAC+GGG - Chr4:5770097-5770116 None:intergenic 60.0%
CAAGCACCAAGGGGGAGCCT+TGG - Chr4:5770254-5770273 None:intergenic 65.0%
TGCATGGGGCTGTGTGCACG+GGG - Chr4:5770096-5770115 None:intergenic 65.0%
ACCAAGGGGGAGCCTTGGCG+CGG - Chr4:5770249-5770268 None:intergenic 70.0%
AAGGGGGAGCCTTGGCGCGG+CGG - Chr4:5770246-5770265 None:intergenic 75.0%
! GCCGCGCCAAGGCTCCCCCT+TGG + Chr4:5770245-5770264 MsG0480018494.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 5769333 5772699 5769333 ID=MsG0480018494.01;Name=MsG0480018494.01
Chr4 mRNA 5769333 5772699 5769333 ID=MsG0480018494.01.T01;Parent=MsG0480018494.01;Name=MsG0480018494.01.T01;_AED=0.48;_eAED=0.48;_QI=106|1|1|1|0.66|0.57|7|382|145
Chr4 exon 5769333 5769414 5769333 ID=MsG0480018494.01.T01:exon:2022;Parent=MsG0480018494.01.T01
Chr4 five_prime_UTR 5769333 5769414 5769333 ID=MsG0480018494.01.T01:five_prime_utr;Parent=MsG0480018494.01.T01
Chr4 five_prime_UTR 5769598 5769621 5769598 ID=MsG0480018494.01.T01:five_prime_utr;Parent=MsG0480018494.01.T01
Chr4 CDS 5769622 5769721 5769622 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 CDS 5770541 5770635 5770541 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 CDS 5770733 5770819 5770733 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 CDS 5771062 5771124 5771062 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 CDS 5771457 5771494 5771457 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 CDS 5772263 5772317 5772263 ID=MsG0480018494.01.T01:cds;Parent=MsG0480018494.01.T01
Chr4 three_prime_UTR 5772318 5772699 5772318 ID=MsG0480018494.01.T01:three_prime_utr;Parent=MsG0480018494.01.T01
Chr4 mRNA 5769455 5772699 5769455 ID=MsG0480018494.01.T02;Parent=MsG0480018494.01;Name=MsG0480018494.01.T02;_AED=0.48;_eAED=0.48;_QI=40|1|1|1|0.66|0.57|7|382|145
Chr4 exon 5769455 5769470 5769455 ID=MsG0480018494.01.T02:exon:2029;Parent=MsG0480018494.01.T02
Chr4 five_prime_UTR 5769455 5769470 5769455 ID=MsG0480018494.01.T02:five_prime_utr;Parent=MsG0480018494.01.T02
Chr4 five_prime_UTR 5769598 5769621 5769598 ID=MsG0480018494.01.T02:five_prime_utr;Parent=MsG0480018494.01.T02
Chr4 CDS 5769622 5769721 5769622 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 CDS 5770541 5770635 5770541 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 CDS 5770733 5770819 5770733 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 CDS 5771062 5771124 5771062 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 CDS 5771457 5771494 5771457 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 CDS 5772263 5772317 5772263 ID=MsG0480018494.01.T02:cds;Parent=MsG0480018494.01.T02
Chr4 three_prime_UTR 5772318 5772699 5772318 ID=MsG0480018494.01.T02:three_prime_utr;Parent=MsG0480018494.01.T02
Gene Sequence

>MsG0480018494.01.T02

ATGGCTTCCATTATTGCAAGCTTGCCACCACCATTGTTGCTCCATGCCAGAAACTCATTTCCAGGGAACTTCCAAAATTTCTCTGTTTCTCTTCTTCCAGGGAGACGGAGTAACGTTCCATTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTTCACTTACTGTTTTCAAGTCTGTTCAGAATGTTTGGGATAAACCTGAGGACCGGTTGGGACTATTTGGTTTGGGCTTTGCAGCTGTAGTAGCACTTTGGGCATCAACAAATTTGATAGCGGCCATTGACAAATTGCCAGTTATCCCGATTTCGTTGGAACTGATTGGAATACTTTTCTCAGTGTGGTTCACCTATCGCTATCTCTTATTCAAGCCTGACCGGGAAGAACTTTTCCAAATCTTGAACAAATCAACTTCAGATATCTTGGGCCAGTAA

>MsG0480018494.01.T01

ATGGCTTCCATTATTGCAAGCTTGCCACCACCATTGTTGCTCCATGCCAGAAACTCATTTCCAGGGAACTTCCAAAATTTCTCTGTTTCTCTTCTTCCAGGGAGACGGAGTAACGTTCCATTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTTCACTTACTGTTTTCAAGTCTGTTCAGAATGTTTGGGATAAACCTGAGGACCGGTTGGGACTATTTGGTTTGGGCTTTGCAGCTGTAGTAGCACTTTGGGCATCAACAAATTTGATAGCGGCCATTGACAAATTGCCAGTTATCCCGATTTCGTTGGAACTGATTGGAATACTTTTCTCAGTGTGGTTCACCTATCGCTATCTCTTATTCAAGCCTGACCGGGAAGAACTTTTCCAAATCTTGAACAAATCAACTTCAGATATCTTGGGCCAGTAA

Protein sequence

>MsG0480018494.01.T02

MASIIASLPPPLLLHARNSFPGNFQNFSVSLLPGRRSNVPFVVKASGESSESSTSLTVFKSVQNVWDKPEDRLGLFGLGFAAVVALWASTNLIAAIDKLPVIPISLELIGILFSVWFTYRYLLFKPDREELFQILNKSTSDILGQ*

>MsG0480018494.01.T01

MASIIASLPPPLLLHARNSFPGNFQNFSVSLLPGRRSNVPFVVKASGESSESSTSLTVFKSVQNVWDKPEDRLGLFGLGFAAVVALWASTNLIAAIDKLPVIPISLELIGILFSVWFTYRYLLFKPDREELFQILNKSTSDILGQ*