AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006452.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006452.01.T01 MTR_2g008610 68.889 270 36 4 1 231 1 261 2.39e-116 333
MsG0280006452.01.T01 MTR_3g101670 50.000 106 45 3 74 173 72 175 3.21e-25 100
MsG0280006452.01.T01 MTR_2g042720 44.030 134 50 4 74 196 76 195 6.27e-25 99.4
MsG0280006452.01.T01 MTR_3g435460 36.719 128 66 3 75 196 68 186 1.48e-18 82.0
MsG0280006452.01.T01 MTR_8g023790 37.209 129 66 3 74 196 77 196 3.48e-18 81.3
MsG0280006452.01.T01 MTR_3g435460 36.220 127 66 3 76 196 8 125 4.77e-18 79.3
MsG0280006452.01.T01 MTR_6g033320 37.624 101 52 1 71 160 57 157 1.06e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006452.01.T01 AT1G15820 59.410 271 57 6 1 231 1 258 1.51e-94 277
MsG0280006452.01.T01 AT1G19150 41.860 129 60 3 74 196 79 198 2.22e-23 95.5
MsG0280006452.01.T01 AT1G45474 43.411 129 62 4 74 196 60 183 4.91e-21 89.0
MsG0280006452.01.T01 AT1G45474 43.411 129 62 4 74 196 60 183 4.91e-21 89.0
MsG0280006452.01.T01 AT3G47470 36.719 128 66 3 75 196 69 187 3.47e-18 80.9
MsG0280006452.01.T01 AT3G61470 37.209 129 66 3 74 196 66 185 7.38e-18 80.1
MsG0280006452.01.T01 AT3G54890 40.816 98 47 1 74 160 59 156 3.03e-14 69.7
MsG0280006452.01.T01 AT3G54890 40.816 98 47 1 74 160 59 156 5.49e-14 69.3
MsG0280006452.01.T01 AT3G54890 57.895 57 24 0 74 130 59 115 1.04e-12 64.3
MsG0280006452.01.T01 AT3G54890 57.895 57 24 0 74 130 59 115 2.64e-12 64.3

Find 108 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCATGGATAGATTT+TGG 0.143281 2:-2132446 None:intergenic
TTCTCCTTTGGTACTCTTCT+AGG 0.198477 2:+2133311 MsG0280006452.01.T01:CDS
TGCTATTATGAAAGATAATT+TGG 0.202464 2:-2132333 None:intergenic
TTGGGATCTTCCTTCTTATC+TGG 0.220925 2:+2132683 MsG0280006452.01.T01:CDS
TACGATCCATCGAGCCATTC+TGG 0.222067 2:-2132862 None:intergenic
ATTTCCATCCTCAGCTGATT+TGG 0.295576 2:-2132408 None:intergenic
TTCGACCCATTGTCCCTTGC+TGG 0.300502 2:+2133490 MsG0280006452.01.T01:CDS
CATTCGATTGACTGTGAATC+CGG 0.308951 2:-2133392 None:intergenic
CCAGGGATCCATGACTTCTT+TGG 0.326294 2:-2132811 None:intergenic
TGGGCAATGGCTGCAGTTCT+AGG 0.329531 2:+2133215 MsG0280006452.01.T01:CDS
AAGACTCCCCTTGGTGCTCT+TGG 0.346873 2:+2133639 MsG0280006452.01.T01:CDS
TTAGATTTCATTGTCCTACT+TGG 0.364923 2:+2132483 MsG0280006452.01.T01:five_prime_UTR
GATGGAAATCCATTTCCTAT+TGG 0.370864 2:+2132422 MsG0280006452.01.T01:five_prime_UTR
TCTAGGCATCTTTGTTGGTC+AGG 0.375207 2:+2133232 MsG0280006452.01.T01:CDS
GCAATTGCTCCATTCTCCTT+TGG 0.375390 2:+2133299 MsG0280006452.01.T01:CDS
GGTGCTGTGTTGAATGGTTT+GGG 0.386787 2:+2132665 MsG0280006452.01.T01:CDS
AGAGAAGCTGAGCTTATTCA+TGG 0.388496 2:+2133188 MsG0280006452.01.T01:CDS
CTGTACCATTTGAGAAATGC+TGG 0.410852 2:-2133167 None:intergenic
TTGTTAGCTACTACTGCTAT+TGG 0.410886 2:+2132725 MsG0280006452.01.T01:CDS
ACCAGCTGCAGCACCACCTT+TGG 0.411073 2:-2132750 None:intergenic
TGGTGCTGTGTTGAATGGTT+TGG 0.411606 2:+2132664 MsG0280006452.01.T01:CDS
TGGATCCCTGGTGTTAGATT+TGG 0.414159 2:+2132823 MsG0280006452.01.T01:CDS
CCCTGGGTAGCCTTGTTCTC+CGG 0.423395 2:-2133459 None:intergenic
GAGAATGGAGCAATTGCATT+GGG 0.424903 2:-2133293 None:intergenic
CCTTCTTATCTGGAGGTAAG+AGG 0.427547 2:+2132693 MsG0280006452.01.T01:CDS
ACGATCCATCGAGCCATTCT+GGG 0.431920 2:-2132861 None:intergenic
AGGCACTCAGTTGATTCTCA+TGG 0.436916 2:+2133331 MsG0280006452.01.T01:CDS
AATCTAAACAAGAAATCTTA+AGG 0.438847 2:-2132467 None:intergenic
TGTAGATTACCAGGTGACTT+TGG 0.442105 2:+2133116 MsG0280006452.01.T01:intron
CTCAGTTGATTCTCATGGGG+TGG 0.444041 2:+2133336 MsG0280006452.01.T01:CDS
GCTGATTTCTACTTTGAAGC+TGG 0.447950 2:+2133609 MsG0280006452.01.T01:CDS
CAAATGGCAGCTGCAACATC+TGG 0.450920 2:+2132644 MsG0280006452.01.T01:exon
GCAGTTCTAGGCATCTTTGT+TGG 0.454175 2:+2133227 MsG0280006452.01.T01:CDS
GCATGCTAGGCTTGCTATGT+TGG 0.454270 2:+2133582 MsG0280006452.01.T01:intron
GGCACTCAGTTGATTCTCAT+GGG 0.454921 2:+2133332 MsG0280006452.01.T01:CDS
GGAGTTCCATGGTTTGAGGC+TGG 0.459578 2:+2133263 MsG0280006452.01.T01:CDS
GCATCTTTGTTGGTCAGGCA+TGG 0.465448 2:+2133237 MsG0280006452.01.T01:CDS
ACATCTGGTGCTGTGTTGAA+TGG 0.470993 2:+2132659 MsG0280006452.01.T01:CDS
AGAAATCTTAAGGTATATCA+TGG 0.471155 2:-2132457 None:intergenic
ATCCCTGGTGTTAGATTTGG+TGG 0.473436 2:+2132826 MsG0280006452.01.T01:CDS
AGTGTAAAAGAGAAGACAAA+TGG 0.474087 2:+2132628 MsG0280006452.01.T01:exon
GCCAAAGGTGGTGCTGCAGC+TGG 0.476963 2:+2132749 MsG0280006452.01.T01:CDS
GAGAACTTTGCTAATGCAAC+CGG 0.479444 2:+2133440 MsG0280006452.01.T01:CDS
GGTTGCATTAGCAAAGTTCT+CGG 0.480106 2:-2133438 None:intergenic
GGTCCTTGCCAAGGCCTAGT+GGG 0.484093 2:-2133145 None:intergenic
GGGTCCTTGCCAAGGCCTAG+TGG 0.496533 2:-2133146 None:intergenic
AGGACCCAGCATTTCTCAAA+TGG 0.509475 2:+2133162 MsG0280006452.01.T01:CDS
AGAAGAGTACCAAAGGAGAA+TGG 0.511148 2:-2133308 None:intergenic
CCTCTTACCTCCAGATAAGA+AGG 0.513918 2:-2132693 None:intergenic
AGGCATGGAGTGGAGTTCCA+TGG 0.514110 2:+2133252 MsG0280006452.01.T01:CDS
TTCTACTTTGAAGCTGGACA+AGG 0.517776 2:+2133615 MsG0280006452.01.T01:CDS
ACCGGAGAACAAGGCTACCC+AGG 0.521424 2:+2133458 MsG0280006452.01.T01:CDS
TTTGTTGGTCAGGCATGGAG+TGG 0.524108 2:+2133242 MsG0280006452.01.T01:CDS
CCAAAGAAGTCATGGATCCC+TGG 0.525917 2:+2132811 MsG0280006452.01.T01:CDS
ATTCGATTGACTGTGAATCC+GGG 0.527520 2:-2133391 None:intergenic
TGGTACCAGCAAGGGACAAT+GGG 0.528256 2:-2133495 None:intergenic
CAGTAGTAGCTAACAAGGCT+TGG 0.533833 2:-2132718 None:intergenic
GGATTCACAGTCAATCGAAT+GGG 0.537483 2:+2133394 MsG0280006452.01.T01:CDS
GGATCTTCCTTCTTATCTGG+AGG 0.538000 2:+2132686 MsG0280006452.01.T01:CDS
AGTAATAGTCTAATAGAGAC+TGG 0.538062 2:-2132589 None:intergenic
CCGGAGAACAAGGCTACCCA+GGG 0.540940 2:+2133459 MsG0280006452.01.T01:CDS
CTTCTGCACCAAAGAAGTCA+TGG 0.541838 2:+2132803 MsG0280006452.01.T01:CDS
GGAGAATGGAGCAATTGCAT+TGG 0.544242 2:-2133294 None:intergenic
CTGAGCTTATTCATGGAAGG+TGG 0.544781 2:+2133195 MsG0280006452.01.T01:CDS
TCAGTTGATTCTCATGGGGT+GGG 0.544833 2:+2133337 MsG0280006452.01.T01:CDS
GAAACCTCGTCGACCCAGAA+TGG 0.547423 2:+2132848 MsG0280006452.01.T01:CDS
GAGTGGAGTTCCATGGTTTG+AGG 0.550527 2:+2133259 MsG0280006452.01.T01:CDS
TCAGCTCCAGCCTCAAACCA+TGG 0.554373 2:-2133269 None:intergenic
ATGGTACCAGCAAGGGACAA+TGG 0.556874 2:-2133496 None:intergenic
GGACAAGGGAAGACTCCCCT+TGG 0.557324 2:+2133630 MsG0280006452.01.T01:CDS
GTGGGTAGAGAGCAAGAGAT+GGG 0.560152 2:+2133355 MsG0280006452.01.T01:CDS
CGGATTCACAGTCAATCGAA+TGG 0.566881 2:+2133393 MsG0280006452.01.T01:CDS
GCTAATGCAACCGGAGAACA+AGG 0.571637 2:+2133449 MsG0280006452.01.T01:CDS
GAAGCCAAATCAGCTGAGGA+TGG 0.573546 2:+2132404 MsG0280006452.01.T01:five_prime_UTR
GAACATGGTGTCCACGTGGT+TGG 0.584310 2:+2132382 MsG0280006452.01.T01:five_prime_UTR
TTACAAGCCAAGAGCACCAA+GGG 0.584331 2:-2133646 None:intergenic
TATTCATGGAAGGTGGGCAA+TGG 0.584518 2:+2133202 MsG0280006452.01.T01:CDS
CAATCGAATGGGCCACTCCA+TGG 0.585992 2:+2133405 MsG0280006452.01.T01:CDS
GGTGGGTAGAGAGCAAGAGA+TGG 0.588337 2:+2133354 MsG0280006452.01.T01:CDS
TTTCCACCAAATCTAACACC+AGG 0.597681 2:-2132829 None:intergenic
TGACCCACTAGGCCTTGGCA+AGG 0.602653 2:+2133142 MsG0280006452.01.T01:CDS
GAAATGCTGGGTCCTTGCCA+AGG 0.604301 2:-2133154 None:intergenic
TGAGCTTATTCATGGAAGGT+GGG 0.606190 2:+2133196 MsG0280006452.01.T01:CDS
ATAGAAAGAGCACAGTGGAG+TGG 0.606414 2:+2132360 MsG0280006452.01.T01:five_prime_UTR
AAGCTGAGCTTATTCATGGA+AGG 0.607522 2:+2133192 MsG0280006452.01.T01:CDS
AGTGCCTAGAAGAGTACCAA+AGG 0.608047 2:-2133315 None:intergenic
TGTACCATTTGAGAAATGCT+GGG 0.608952 2:-2133166 None:intergenic
GAGCACAGTGGAGTGGAACA+TGG 0.610835 2:+2132367 MsG0280006452.01.T01:five_prime_UTR
ATGGGTCGATTTCTTCAACC+CGG 0.612388 2:+2133373 MsG0280006452.01.T01:CDS
AATAGCAGTAGTAGCTAACA+AGG 0.617085 2:-2132723 None:intergenic
GTCGACCCAGAATGGCTCGA+TGG 0.628418 2:+2132856 MsG0280006452.01.T01:CDS
ACTACTGCTATTGGAGCCAA+AGG 0.636609 2:+2132734 MsG0280006452.01.T01:CDS
CGAGCCATTCTGGGTCGACG+AGG 0.636930 2:-2132852 None:intergenic
ACTGCTATTGGAGCCAAAGG+TGG 0.639021 2:+2132737 MsG0280006452.01.T01:CDS
GCACTCAGTTGATTCTCATG+GGG 0.642271 2:+2133333 MsG0280006452.01.T01:CDS
GTGTGAGAGAGAATCTGAAA+GGG 0.647375 2:-2132519 None:intergenic
TTTACAAGCCAAGAGCACCA+AGG 0.650086 2:-2133647 None:intergenic
TGTGTGAGAGAGAATCTGAA+AGG 0.656017 2:-2132520 None:intergenic
TCTACTTTGAAGCTGGACAA+GGG 0.667290 2:+2133616 MsG0280006452.01.T01:CDS
GTTGGAAGCCAAATCAGCTG+AGG 0.676509 2:+2132400 MsG0280006452.01.T01:five_prime_UTR
AGAATGGAGCAATTGCATTG+GGG 0.695433 2:-2133292 None:intergenic
TGCATTAGCAAAGTTCTCGG+CGG 0.703055 2:-2133435 None:intergenic
TGATTTGGCTTCCAACCACG+TGG 0.709465 2:-2132393 None:intergenic
TTCCACCAAATCTAACACCA+GGG 0.730328 2:-2132828 None:intergenic
AGTGGAACATGGTGTCCACG+TGG 0.737131 2:+2132378 MsG0280006452.01.T01:five_prime_UTR
TACAAGCCAAGAGCACCAAG+GGG 0.741553 2:-2133645 None:intergenic
AAAAGATAGAAAGAGCACAG+TGG 0.743548 2:+2132355 MsG0280006452.01.T01:five_prime_UTR
CGGAGAACAAGGCTACCCAG+GGG 0.749213 2:+2133460 MsG0280006452.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATCAATTCTAA+AGG - Chr2:2132914-2132933 None:intergenic 15.0%
!! AATAAATTTAAGTAAACGTG+TGG - Chr2:2132977-2132996 None:intergenic 20.0%
!! AATCTAAACAAGAAATCTTA+AGG - Chr2:2132470-2132489 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG - Chr2:2132891-2132910 None:intergenic 20.0%
! AGAAATCTTAAGGTATATCA+TGG - Chr2:2132460-2132479 None:intergenic 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG + Chr2:2133107-2133126 MsG0280006452.01.T01:intron 25.0%
AATTTAAGTAAACGTGTGGA+AGG - Chr2:2132973-2132992 None:intergenic 30.0%
AGTAATAGTCTAATAGAGAC+TGG - Chr2:2132592-2132611 None:intergenic 30.0%
AGTGTAAAAGAGAAGACAAA+TGG + Chr2:2132628-2132647 MsG0280006452.01.T01:exon 30.0%
TTAGATTTCATTGTCCTACT+TGG + Chr2:2132483-2132502 MsG0280006452.01.T01:five_prime_UTR 30.0%
! GGTATATCATGGATAGATTT+TGG - Chr2:2132449-2132468 None:intergenic 30.0%
AATAGCAGTAGTAGCTAACA+AGG - Chr2:2132726-2132745 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG + Chr2:2132422-2132441 MsG0280006452.01.T01:five_prime_UTR 35.0%
TGTACCATTTGAGAAATGCT+GGG - Chr2:2133169-2133188 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG + Chr2:2132725-2132744 MsG0280006452.01.T01:CDS 35.0%
! AAAAGATAGAAAGAGCACAG+TGG + Chr2:2132355-2132374 MsG0280006452.01.T01:five_prime_UTR 35.0%
! AATGTAAACTCCGTTTTCGA+TGG - Chr2:2133518-2133537 None:intergenic 35.0%
! AGCAGCAACATAAGTCTTTT+AGG - Chr2:2132779-2132798 None:intergenic 35.0%
! GATTTTGGACCAATAGGAAA+TGG - Chr2:2132434-2132453 None:intergenic 35.0%
! TCTGAAAGGGTTTTCATAGA+AGG - Chr2:2132509-2132528 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG - Chr2:2132440-2132459 None:intergenic 35.0%
AAGCTGAGCTTATTCATGGA+AGG + Chr2:2133192-2133211 MsG0280006452.01.T01:CDS 40.0%
AGAATGGAGCAATTGCATTG+GGG - Chr2:2133295-2133314 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG + Chr2:2133188-2133207 MsG0280006452.01.T01:CDS 40.0%
ATTCGATTGACTGTGAATCC+GGG - Chr2:2133394-2133413 None:intergenic 40.0%
ATTTCCATCCTCAGCTGATT+TGG - Chr2:2132411-2132430 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG - Chr2:2133395-2133414 None:intergenic 40.0%
CTGTACCATTTGAGAAATGC+TGG - Chr2:2133170-2133189 None:intergenic 40.0%
GAAGCTAGAGAGATTGAAAC+TGG + Chr2:2133549-2133568 MsG0280006452.01.T01:intron 40.0%
GAGAACTTTGCTAATGCAAC+CGG + Chr2:2133440-2133459 MsG0280006452.01.T01:CDS 40.0%
GAGAATGGAGCAATTGCATT+GGG - Chr2:2133296-2133315 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG + Chr2:2133394-2133413 MsG0280006452.01.T01:CDS 40.0%
GGTTGCATTAGCAAAGTTCT+CGG - Chr2:2133441-2133460 None:intergenic 40.0%
GTGTGAGAGAGAATCTGAAA+GGG - Chr2:2132522-2132541 None:intergenic 40.0%
TGAGCTTATTCATGGAAGGT+GGG + Chr2:2133196-2133215 MsG0280006452.01.T01:CDS 40.0%
TGTAGATTACCAGGTGACTT+TGG + Chr2:2133116-2133135 MsG0280006452.01.T01:intron 40.0%
TGTGTGAGAGAGAATCTGAA+AGG - Chr2:2132523-2132542 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG - Chr2:2132831-2132850 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG + Chr2:2133311-2133330 MsG0280006452.01.T01:CDS 40.0%
TTGGGATCTTCCTTCTTATC+TGG + Chr2:2132683-2132702 MsG0280006452.01.T01:CDS 40.0%
TTTCCACCAAATCTAACACC+AGG - Chr2:2132832-2132851 None:intergenic 40.0%
! GTTTTCATAGAAGGCCAAGT+AGG - Chr2:2132500-2132519 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG - Chr2:2133311-2133330 None:intergenic 40.0%
!! GCTGATTTCTACTTTGAAGC+TGG + Chr2:2133609-2133628 MsG0280006452.01.T01:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG + Chr2:2133616-2133635 MsG0280006452.01.T01:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG + Chr2:2133615-2133634 MsG0280006452.01.T01:CDS 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG - Chr2:2132575-2132594 None:intergenic 40.0%
ACTACTGCTATTGGAGCCAA+AGG + Chr2:2132734-2132753 MsG0280006452.01.T01:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG + Chr2:2133162-2133181 MsG0280006452.01.T01:CDS 45.0%
CAGTAGTAGCTAACAAGGCT+TGG - Chr2:2132721-2132740 None:intergenic 45.0%
CCTCTTACCTCCAGATAAGA+AGG - Chr2:2132696-2132715 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG + Chr2:2132693-2132712 MsG0280006452.01.T01:CDS 45.0%
CGGATTCACAGTCAATCGAA+TGG + Chr2:2133393-2133412 MsG0280006452.01.T01:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG + Chr2:2133195-2133214 MsG0280006452.01.T01:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG + Chr2:2132803-2132822 MsG0280006452.01.T01:CDS 45.0%
CTTGCTGGTACCATCGAAAA+CGG + Chr2:2133505-2133524 MsG0280006452.01.T01:intron 45.0%
GCAATTGCTCCATTCTCCTT+TGG + Chr2:2133299-2133318 MsG0280006452.01.T01:CDS 45.0%
GGAGAATGGAGCAATTGCAT+TGG - Chr2:2133297-2133316 None:intergenic 45.0%
GGATCTTCCTTCTTATCTGG+AGG + Chr2:2132686-2132705 MsG0280006452.01.T01:CDS 45.0%
TATTCATGGAAGGTGGGCAA+TGG + Chr2:2133202-2133221 MsG0280006452.01.T01:CDS 45.0%
TCTAGGCATCTTTGTTGGTC+AGG + Chr2:2133232-2133251 MsG0280006452.01.T01:CDS 45.0%
TGCATTAGCAAAGTTCTCGG+CGG - Chr2:2133438-2133457 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG + Chr2:2133569-2133588 MsG0280006452.01.T01:intron 45.0%
! AGGCACTCAGTTGATTCTCA+TGG + Chr2:2133331-2133350 MsG0280006452.01.T01:CDS 45.0%
! ATAGAAAGAGCACAGTGGAG+TGG + Chr2:2132360-2132379 MsG0280006452.01.T01:five_prime_UTR 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG + Chr2:2132826-2132845 MsG0280006452.01.T01:CDS 45.0%
! ATGGGTCGATTTCTTCAACC+CGG + Chr2:2133373-2133392 MsG0280006452.01.T01:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG - Chr2:2133541-2133560 None:intergenic 45.0%
! GCACTCAGTTGATTCTCATG+GGG + Chr2:2133333-2133352 MsG0280006452.01.T01:CDS 45.0%
! GGCACTCAGTTGATTCTCAT+GGG + Chr2:2133332-2133351 MsG0280006452.01.T01:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG + Chr2:2132665-2132684 MsG0280006452.01.T01:CDS 45.0%
! GTTTTCGATGGTACCAGCAA+GGG - Chr2:2133506-2133525 None:intergenic 45.0%
! TCAGTTGATTCTCATGGGGT+GGG + Chr2:2133337-2133356 MsG0280006452.01.T01:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG + Chr2:2132823-2132842 MsG0280006452.01.T01:CDS 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG + Chr2:2132659-2132678 MsG0280006452.01.T01:CDS 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG - Chr2:2133318-2133337 None:intergenic 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG + Chr2:2133227-2133246 MsG0280006452.01.T01:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG + Chr2:2132664-2132683 MsG0280006452.01.T01:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG - Chr2:2133649-2133668 None:intergenic 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG + Chr2:2133131-2133150 MsG0280006452.01.T01:CDS 45.0%
ACGATCCATCGAGCCATTCT+GGG - Chr2:2132864-2132883 None:intergenic 50.0%
ACTGCTATTGGAGCCAAAGG+TGG + Chr2:2132737-2132756 MsG0280006452.01.T01:CDS 50.0%
ATGGTACCAGCAAGGGACAA+TGG - Chr2:2133499-2133518 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG + Chr2:2132644-2132663 MsG0280006452.01.T01:exon 50.0%
CCAAAGAAGTCATGGATCCC+TGG + Chr2:2132811-2132830 MsG0280006452.01.T01:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG - Chr2:2132814-2132833 None:intergenic 50.0%
GAAGCCAAATCAGCTGAGGA+TGG + Chr2:2132404-2132423 MsG0280006452.01.T01:five_prime_UTR 50.0%
GAGTGGAGTTCCATGGTTTG+AGG + Chr2:2133259-2133278 MsG0280006452.01.T01:CDS 50.0%
GCATCTTTGTTGGTCAGGCA+TGG + Chr2:2133237-2133256 MsG0280006452.01.T01:CDS 50.0%
GCTAATGCAACCGGAGAACA+AGG + Chr2:2133449-2133468 MsG0280006452.01.T01:CDS 50.0%
GGGTCAAAACCAAAGTCACC+TGG - Chr2:2133128-2133147 None:intergenic 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG + Chr2:2133355-2133374 MsG0280006452.01.T01:CDS 50.0%
GTTGGAAGCCAAATCAGCTG+AGG + Chr2:2132400-2132419 MsG0280006452.01.T01:five_prime_UTR 50.0%
TACGATCCATCGAGCCATTC+TGG - Chr2:2132865-2132884 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG - Chr2:2133498-2133517 None:intergenic 50.0%
TTTGTTGGTCAGGCATGGAG+TGG + Chr2:2133242-2133261 MsG0280006452.01.T01:CDS 50.0%
! CGTTTTCGATGGTACCAGCA+AGG - Chr2:2133507-2133526 None:intergenic 50.0%
! CTCAGTTGATTCTCATGGGG+TGG + Chr2:2133336-2133355 MsG0280006452.01.T01:CDS 50.0%
! GGGTCGAAGAATTTTCCCCT+GGG - Chr2:2133478-2133497 None:intergenic 50.0%
! TGATTTGGCTTCCAACCACG+TGG - Chr2:2132396-2132415 None:intergenic 50.0%
! TGGGTCGAAGAATTTTCCCC+TGG - Chr2:2133479-2133498 None:intergenic 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG - Chr2:2133425-2133444 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG + Chr2:2133582-2133601 MsG0280006452.01.T01:intron 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG - Chr2:2133648-2133667 None:intergenic 50.0%
AGGCATGGAGTGGAGTTCCA+TGG + Chr2:2133252-2133271 MsG0280006452.01.T01:CDS 55.0%
AGTGGAACATGGTGTCCACG+TGG + Chr2:2132378-2132397 MsG0280006452.01.T01:five_prime_UTR 55.0%
CAATCGAATGGGCCACTCCA+TGG + Chr2:2133405-2133424 MsG0280006452.01.T01:CDS 55.0%
GAAACCTCGTCGACCCAGAA+TGG + Chr2:2132848-2132867 MsG0280006452.01.T01:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG - Chr2:2133157-2133176 None:intergenic 55.0%
GAACATGGTGTCCACGTGGT+TGG + Chr2:2132382-2132401 MsG0280006452.01.T01:five_prime_UTR 55.0%
GAGCACAGTGGAGTGGAACA+TGG + Chr2:2132367-2132386 MsG0280006452.01.T01:five_prime_UTR 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG + Chr2:2133354-2133373 MsG0280006452.01.T01:CDS 55.0%
TCAGCTCCAGCCTCAAACCA+TGG - Chr2:2133272-2133291 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG + Chr2:2133215-2133234 MsG0280006452.01.T01:CDS 55.0%
TTCGACCCATTGTCCCTTGC+TGG + Chr2:2133490-2133509 MsG0280006452.01.T01:CDS 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG + Chr2:2133263-2133282 MsG0280006452.01.T01:CDS 55.0%
! GGCGGTTTTTGACCATGGAG+TGG - Chr2:2133420-2133439 None:intergenic 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG + Chr2:2133639-2133658 MsG0280006452.01.T01:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG + Chr2:2133137-2133156 MsG0280006452.01.T01:CDS 55.0%
ACCAGCTGCAGCACCACCTT+TGG - Chr2:2132753-2132772 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG + Chr2:2133458-2133477 MsG0280006452.01.T01:CDS 60.0%
CCGGAGAACAAGGCTACCCA+GGG + Chr2:2133459-2133478 MsG0280006452.01.T01:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG + Chr2:2133460-2133479 MsG0280006452.01.T01:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG + Chr2:2133630-2133649 MsG0280006452.01.T01:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG - Chr2:2133148-2133167 None:intergenic 60.0%
GTCGACCCAGAATGGCTCGA+TGG + Chr2:2132856-2132875 MsG0280006452.01.T01:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG + Chr2:2133142-2133161 MsG0280006452.01.T01:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG - Chr2:2133462-2133481 None:intergenic 60.0%
CGAGCCATTCTGGGTCGACG+AGG - Chr2:2132855-2132874 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG - Chr2:2133149-2133168 None:intergenic 65.0%
!! GCCAAAGGTGGTGCTGCAGC+TGG + Chr2:2132749-2132768 MsG0280006452.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 2132335 2133668 2132335 ID=MsG0280006452.01;Name=MsG0280006452.01
Chr2 mRNA 2132335 2133668 2132335 ID=MsG0280006452.01.T01;Parent=MsG0280006452.01;Name=MsG0280006452.01.T01;_AED=0.42;_eAED=0.43;_QI=312|0|0.33|1|1|1|3|0|231
Chr2 exon 2132335 2132881 2132335 ID=MsG0280006452.01.T01:exon:1315;Parent=MsG0280006452.01.T01
Chr2 exon 2133129 2133511 2133129 ID=MsG0280006452.01.T01:exon:1316;Parent=MsG0280006452.01.T01
Chr2 exon 2133591 2133668 2133591 ID=MsG0280006452.01.T01:exon:1317;Parent=MsG0280006452.01.T01
Chr2 five_prime_UTR 2132335 2132646 2132335 ID=MsG0280006452.01.T01:five_prime_utr;Parent=MsG0280006452.01.T01
Chr2 CDS 2132647 2132881 2132647 ID=MsG0280006452.01.T01:cds;Parent=MsG0280006452.01.T01
Chr2 CDS 2133129 2133511 2133129 ID=MsG0280006452.01.T01:cds;Parent=MsG0280006452.01.T01
Chr2 CDS 2133591 2133668 2133591 ID=MsG0280006452.01.T01:cds;Parent=MsG0280006452.01.T01
Gene Sequence

>MsG0280006452.01.T01

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAGCCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGCTGCAGCTGGTAGTCCTAAAAGACTTATGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGCTTGCTATGTTGGCTATGCTGATTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>MsG0280006452.01.T01

MAAATSGAVLNGLGSSFLSGGKRSQALLATTAIGAKGGAAAGSPKRLMLLLLLLHQRSHGSLVLDLVETSSTQNGSMDRDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGENSSTHCPLLACYVGYADFYFEAGQGKTPLGALGL*