AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004553.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004553.01.T01 MTR_1g082420 98.962 289 3 0 1 289 1 289 0.0 578
MsG0180004553.01.T01 MTR_1g082420 98.551 207 3 0 1 207 1 207 3.15e-147 411
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004553.01.T01 AT1G54780 69.595 296 72 3 1 289 1 285 5.65e-138 391

Find 81 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATCCAACAAACATATT+TGG 0.145319 1:+79490496 None:intergenic
GAAATTAAAGAGTGATAATT+TGG 0.178944 1:+79490617 None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG 0.232772 1:+79492729 None:intergenic
GAAACGTTTGTTATCTGATT+TGG 0.264813 1:-79492381 MsG0180004553.01.T01:CDS
GCATTACCACTAAGTAAAAC+TGG 0.283086 1:+79492503 None:intergenic
TGAGTTTGCGGACCAAATTT+TGG 0.287868 1:-79491884 MsG0180004553.01.T01:CDS
CTCATGTTCTGTCTTTGATT+TGG 0.290236 1:+79492831 None:intergenic
CTTGCTCACTCATGCTCAAC+AGG 0.301494 1:-79492567 MsG0180004553.01.T01:CDS
TATCAATTGTCAATACATAA+AGG 0.302146 1:-79490436 MsG0180004553.01.T01:three_prime_UTR
GATACCAACGCTCCAAAATT+TGG 0.302536 1:+79491872 None:intergenic
GAAATGAGAGAGGTTGATTT+GGG 0.321070 1:+79492668 None:intergenic
GGAAATGAGAGAGGTTGATT+TGG 0.327476 1:+79492667 None:intergenic
ATTAGAAACAATGGGTTTGT+AGG 0.342048 1:+79492646 None:intergenic
TCTTGTAGTTGGAGGTTTGT+TGG 0.348630 1:-79490729 MsG0180004553.01.T01:CDS
ATCAATTGTCAATACATAAA+GGG 0.365525 1:-79490435 MsG0180004553.01.T01:three_prime_UTR
ATAATCCAACAAACATATTT+GGG 0.369748 1:+79490497 None:intergenic
TAATTCCCAAATATGTTTGT+TGG 0.374420 1:-79490502 MsG0180004553.01.T01:three_prime_UTR
TCAACCACATAGGCCTCTTT+AGG 0.375166 1:+79492443 None:intergenic
ACTGTTTCAGAGAACCTTCC+AGG 0.376813 1:-79491730 MsG0180004553.01.T01:intron
AGAAGTGGAGAGAGAGAGTT+GGG 0.377846 1:+79492719 None:intergenic
CAGAAAGAAGGAGCAGTTAC+TGG 0.391425 1:-79491799 MsG0180004553.01.T01:CDS
GGAGAGAAGGTGAAGATTTG+AGG 0.395997 1:+79492693 None:intergenic
TGAGAGAGGTTGATTTGGGT+TGG 0.410728 1:+79492672 None:intergenic
CAATTCTCTCTTGTAGTTGG+AGG 0.420228 1:-79490737 MsG0180004553.01.T01:CDS
GTGCATGAAGGAAGGGTTGG+TGG 0.423912 1:+79492593 None:intergenic
TATTGCATTTGTTGTTCCTA+TGG 0.427254 1:-79490705 MsG0180004553.01.T01:CDS
CGACTAGTTGCTGCCATTGA+CGG 0.431818 1:-79490848 MsG0180004553.01.T01:CDS
GTTGATTTGGGTTGGAGAGA+AGG 0.438011 1:+79492680 None:intergenic
ACCGAGGGACCACCAGGATC+TGG 0.448423 1:+79490821 None:intergenic
GGACAATTCTCTCTTGTAGT+TGG 0.450595 1:-79490740 MsG0180004553.01.T01:CDS
GAGAAGTGGAGAGAGAGAGT+TGG 0.457937 1:+79492718 None:intergenic
TGAGGAAGATGAGGGAGGGT+TGG 0.476347 1:+79492759 None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG 0.492907 1:+79490805 None:intergenic
GCCTATGTGGTTGATGATGC+TGG 0.497501 1:-79492434 MsG0180004553.01.T01:CDS
TTTACTTAGTGGTAATGCAT+TGG 0.498407 1:-79492498 MsG0180004553.01.T01:CDS
TAATGAGCGTCCACCTAAAG+AGG 0.498637 1:-79492456 MsG0180004553.01.T01:CDS
TCCAGATCCTGGTGGTCCCT+CGG 0.499224 1:-79490822 MsG0180004553.01.T01:CDS
TTGGTATCCTTCTGTGGAAG+AGG 0.505336 1:-79491857 MsG0180004553.01.T01:CDS
TTTGTATGCAGTATTGGCTA+CGG 0.505886 1:-79490909 MsG0180004553.01.T01:intron
GATGAGGGAGGGTTGGAATG+AGG 0.511085 1:+79492766 None:intergenic
GAAGATTTGAGGTTGAGAAG+TGG 0.512998 1:+79492704 None:intergenic
TGTTATCTGATTTGGAATCA+AGG 0.519003 1:-79492373 MsG0180004553.01.T01:CDS
GGGTTGTCATGAGGAAGATG+AGG 0.520868 1:+79492750 None:intergenic
ACTCAATTATAACATGAGCT+TGG 0.526873 1:+79490571 None:intergenic
TCTTTAACCGAGGGACCACC+AGG 0.532906 1:+79490815 None:intergenic
ATTGACGGACTTCCAGATCC+TGG 0.535082 1:-79490833 MsG0180004553.01.T01:CDS
AGGATCTGGAAGTCCGTCAA+TGG 0.539431 1:+79490835 None:intergenic
TAAGCATAGTATTGTACCAT+AGG 0.544493 1:+79490689 None:intergenic
TCATTACCCTCTTCCACAGA+AGG 0.547276 1:+79491850 None:intergenic
GGTTGTCATGAGGAAGATGA+GGG 0.547700 1:+79492751 None:intergenic
CATTACCACTAAGTAAAACT+GGG 0.556805 1:+79492504 None:intergenic
CCTACGGCTTGAACAAAAGC+AGG 0.557352 1:+79491772 None:intergenic
GCAAGGTTGTGCATGAAGGA+AGG 0.559545 1:+79492585 None:intergenic
TGTCATGAGGAAGATGAGGG+AGG 0.561679 1:+79492754 None:intergenic
CTTGTAACAAGTCAGAAAGA+AGG 0.568574 1:-79491811 MsG0180004553.01.T01:CDS
GTCATGAGGAAGATGAGGGA+GGG 0.568806 1:+79492755 None:intergenic
GGGTAATGACAAGGGTGTTG+TGG 0.576837 1:-79491836 MsG0180004553.01.T01:CDS
TATTACACTTAGAAAACTCA+CGG 0.578085 1:-79492330 MsG0180004553.01.T01:intron
ACCACATAGGCCTCTTTAGG+TGG 0.587301 1:+79492446 None:intergenic
GTTGTGCATGAAGGAAGGGT+TGG 0.597066 1:+79492590 None:intergenic
CGTTTGTCGTCTTTAACCGA+GGG 0.605535 1:+79490806 None:intergenic
GGAGCGTTGGTATCCTTCTG+TGG 0.606556 1:-79491863 MsG0180004553.01.T01:CDS
GAAGAGACAGAAGAAAAGCG+TGG 0.608619 1:-79490761 MsG0180004553.01.T01:CDS
GGGTTTGTAGGAAATGAGAG+AGG 0.610811 1:+79492658 None:intergenic
TCCACCTAAAGAGGCCTATG+TGG 0.614674 1:-79492447 MsG0180004553.01.T01:CDS
GGGAGGGTTGGAATGAGGAA+AGG 0.615602 1:+79492771 None:intergenic
TGGTATCCTTCTGTGGAAGA+GGG 0.615864 1:-79491856 MsG0180004553.01.T01:CDS
AGTGGAGAGAGAGAGTTGGG+AGG 0.617964 1:+79492722 None:intergenic
AGAACAATGTTGTGCAACAG+AGG 0.624229 1:-79492810 MsG0180004553.01.T01:five_prime_UTR
GTGAGCAAGGTTGTGCATGA+AGG 0.627468 1:+79492581 None:intergenic
TGAGTCTAACTTCAAAACAA+AGG 0.628354 1:-79490783 MsG0180004553.01.T01:CDS
CAAGGTTGTGCATGAAGGAA+GGG 0.640898 1:+79492586 None:intergenic
TGTGGAAGAGGGTAATGACA+AGG 0.647686 1:-79491845 MsG0180004553.01.T01:CDS
CTGTTGAGCATGAGTGAGCA+AGG 0.649149 1:+79492568 None:intergenic
GCCATTAGGAAGTACCTGGA+AGG 0.650563 1:+79491716 None:intergenic
TTGCTCACTCATGCTCAACA+GGG 0.667046 1:-79492566 MsG0180004553.01.T01:CDS
AAAGAAGGAGCAGTTACTGG+TGG 0.670414 1:-79491796 MsG0180004553.01.T01:CDS
TCCAGCATCATCAACCACAT+AGG 0.674153 1:+79492433 None:intergenic
GTGGAAGAGGGTAATGACAA+GGG 0.686921 1:-79491844 MsG0180004553.01.T01:CDS
GACGGACTTCCAGATCCTGG+TGG 0.696278 1:-79490830 MsG0180004553.01.T01:CDS
TCTCTGAAACAGTAGCATCG+AGG 0.748886 1:+79491740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAATGTTGAATTTT+TGG - Chr1:79491290-79491309 MsG0180004553.01.T01:intron 10.0%
!!! ATATCCATTATCTTATTTTT+TGG + Chr1:79492580-79492599 None:intergenic 15.0%
!! AACTCTTCTTAACAAAAAAA+GGG + Chr1:79491918-79491937 None:intergenic 20.0%
!! AATAATCCAACAAACATATT+TGG + Chr1:79492745-79492764 None:intergenic 20.0%
!! ATAATCCAACAAACATATTT+GGG + Chr1:79492744-79492763 None:intergenic 20.0%
!! ATCAATTGTCAATACATAAA+GGG - Chr1:79492803-79492822 MsG0180004553.01.T01:five_prime_UTR 20.0%
!! GAAATTAAAGAGTGATAATT+TGG + Chr1:79492624-79492643 None:intergenic 20.0%
!! TATAGTTGTTGTATTGTAAT+AGG - Chr1:79491186-79491205 MsG0180004553.01.T01:intron 20.0%
!! TATCAATTGTCAATACATAA+AGG - Chr1:79492802-79492821 MsG0180004553.01.T01:five_prime_UTR 20.0%
!! TTTCTTGAAAAATAAATGCA+AGG - Chr1:79491839-79491858 MsG0180004553.01.T01:CDS 20.0%
!!! TTTTTGAGATTAGAAACAAT+GGG + Chr1:79490603-79490622 None:intergenic 20.0%
! CAACTCTTCTTAACAAAAAA+AGG + Chr1:79491919-79491938 None:intergenic 25.0%
! GTAGCCAAAAAATAAGATAA+TGG - Chr1:79492573-79492592 MsG0180004553.01.T01:CDS 25.0%
! GTTGTATTGTAATAGGAAAA+CGG - Chr1:79491193-79491212 MsG0180004553.01.T01:intron 25.0%
! TAATTCCCAAATATGTTTGT+TGG - Chr1:79492736-79492755 MsG0180004553.01.T01:CDS 25.0%
! TACATACTTCAGTTTAAACA+AGG - Chr1:79492132-79492151 MsG0180004553.01.T01:intron 25.0%
! TATTACACTTAGAAAACTCA+CGG - Chr1:79490908-79490927 MsG0180004553.01.T01:intron 25.0%
! TCATCAATAAACTGTTAGAA+TGG - Chr1:79491263-79491282 MsG0180004553.01.T01:intron 25.0%
! TGATTATTTATGTCTGTGAA+AGG - Chr1:79491631-79491650 MsG0180004553.01.T01:intron 25.0%
! TTGTTTAAACTGAAGTATGT+AGG + Chr1:79492133-79492152 None:intergenic 25.0%
!! AAGCAACTTTGTTATGAATA+TGG - Chr1:79491752-79491771 MsG0180004553.01.T01:CDS 25.0%
!!! ATGTTGAATTTTTGGATTTG+TGG - Chr1:79491298-79491317 MsG0180004553.01.T01:intron 25.0%
!!! ATTGTTTTTCTGTAGCATAT+TGG - Chr1:79491564-79491583 MsG0180004553.01.T01:intron 25.0%
!!! CAAATAAGATCAGAGTTTTT+TGG - Chr1:79492703-79492722 MsG0180004553.01.T01:CDS 25.0%
!!! CTTTTTGAGATTAGAAACAA+TGG + Chr1:79490604-79490623 None:intergenic 25.0%
!!! TTGTTTTTCTGTAGCATATT+GGG - Chr1:79491565-79491584 MsG0180004553.01.T01:intron 25.0%
!!! TTTTTTCTCACCAACAAATA+TGG - Chr1:79491685-79491704 MsG0180004553.01.T01:intron 25.0%
!!! TTTTTTGTTAAGAAGAGTTG+AGG - Chr1:79491919-79491938 MsG0180004553.01.T01:intron 25.0%
ACTCAATTATAACATGAGCT+TGG + Chr1:79492670-79492689 None:intergenic 30.0%
ACTGAGTATATAGTAAAGGA+CGG - Chr1:79491791-79491810 MsG0180004553.01.T01:CDS 30.0%
ATACAGCTACTAAATGGATA+GGG + Chr1:79492090-79492109 None:intergenic 30.0%
ATGCACTGAGTATATAGTAA+AGG - Chr1:79491787-79491806 MsG0180004553.01.T01:CDS 30.0%
CAACATATACAGCTACTAAA+TGG + Chr1:79492096-79492115 None:intergenic 30.0%
CATTACCACTAAGTAAAACT+GGG + Chr1:79490737-79490756 None:intergenic 30.0%
TAAGCATAGTATTGTACCAT+AGG + Chr1:79492552-79492571 None:intergenic 30.0%
TATACAGCTACTAAATGGAT+AGG + Chr1:79492091-79492110 None:intergenic 30.0%
TCATCATGATCATTGATCAT+TGG + Chr1:79491991-79492010 None:intergenic 30.0%
TGAGTCTAACTTCAAAACAA+AGG - Chr1:79492455-79492474 MsG0180004553.01.T01:CDS 30.0%
TTTAAACTGAAGTATGTAGG+CGG + Chr1:79492130-79492149 None:intergenic 30.0%
! ATTAGAAACAATGGGTTTGT+AGG + Chr1:79490595-79490614 None:intergenic 30.0%
! TGTTTTTCTGTAGCATATTG+GGG - Chr1:79491566-79491585 MsG0180004553.01.T01:intron 30.0%
! TTTACTTAGTGGTAATGCAT+TGG - Chr1:79490740-79490759 MsG0180004553.01.T01:CDS 30.0%
!! AGCAGTTGTGATCATTTTTA+GGG - Chr1:79492277-79492296 MsG0180004553.01.T01:intron 30.0%
!! GAAACGTTTGTTATCTGATT+TGG - Chr1:79490857-79490876 MsG0180004553.01.T01:CDS 30.0%
!! TAGCAGTTGTGATCATTTTT+AGG - Chr1:79492276-79492295 MsG0180004553.01.T01:intron 30.0%
!! TATTGCATTTGTTGTTCCTA+TGG - Chr1:79492533-79492552 MsG0180004553.01.T01:CDS 30.0%
!! TGAATTTTTGGATTTGTGGT+TGG - Chr1:79491302-79491321 MsG0180004553.01.T01:intron 30.0%
!! TGTTATCTGATTTGGAATCA+AGG - Chr1:79490865-79490884 MsG0180004553.01.T01:CDS 30.0%
AAGGATTTACAAGACTGTCT+TGG - Chr1:79491650-79491669 MsG0180004553.01.T01:intron 35.0%
AGTAGCTGTATATGTTGTCA+AGG - Chr1:79492099-79492118 MsG0180004553.01.T01:intron 35.0%
CATGTCCATCATTATCGTTA+TGG + Chr1:79492014-79492033 None:intergenic 35.0%
CATGTGTTCATAAACTGTGA+AGG - Chr1:79491729-79491748 MsG0180004553.01.T01:intron 35.0%
CTTCAGTTTAAACAAGGCAA+CGG - Chr1:79492138-79492157 MsG0180004553.01.T01:intron 35.0%
CTTGTAACAAGTCAGAAAGA+AGG - Chr1:79491427-79491446 MsG0180004553.01.T01:intron 35.0%
GATGACCATAACGATAATGA+TGG - Chr1:79492006-79492025 MsG0180004553.01.T01:intron 35.0%
GCATTACCACTAAGTAAAAC+TGG + Chr1:79490738-79490757 None:intergenic 35.0%
GTAAAGGACGGATGATAATT+TGG - Chr1:79491803-79491822 MsG0180004553.01.T01:CDS 35.0%
GTAACTTCAGAAGACATACA+TGG + Chr1:79492246-79492265 None:intergenic 35.0%
GTTTATGACATGTCAATGAG+CGG - Chr1:79491028-79491047 MsG0180004553.01.T01:intron 35.0%
TACCTGGATAAAAGAGCTTA+TGG - Chr1:79491001-79491020 MsG0180004553.01.T01:intron 35.0%
TGCATACAAAAACCAGACAA+TGG + Chr1:79492319-79492338 None:intergenic 35.0%
TGCATCAAGTGCATAAAAAC+TGG + Chr1:79492776-79492795 None:intergenic 35.0%
TTCACACTTGCCATATTTGT+TGG + Chr1:79491698-79491717 None:intergenic 35.0%
! ATCGAGGATATTTTCTCCTA+CGG + Chr1:79491485-79491504 None:intergenic 35.0%
! CTTATTTGAGCTTGTTTACC+TGG - Chr1:79490985-79491004 MsG0180004553.01.T01:intron 35.0%
! GAAATGAGAGAGGTTGATTT+GGG + Chr1:79490573-79490592 None:intergenic 35.0%
! TTCCATAAGCTCTTTTATCC+AGG + Chr1:79491006-79491025 None:intergenic 35.0%
!! CTGGTTTTTGTATGCAGTAT+TGG - Chr1:79492323-79492342 MsG0180004553.01.T01:intron 35.0%
!! GAATTGTTTTGTCAGCATGT+GGG - Chr1:79491875-79491894 MsG0180004553.01.T01:CDS 35.0%
!! GCAGTTGTGATCATTTTTAG+GGG - Chr1:79492278-79492297 MsG0180004553.01.T01:intron 35.0%
!! TGAATTGTTTTGTCAGCATG+TGG - Chr1:79491874-79491893 MsG0180004553.01.T01:CDS 35.0%
!! TTTGTATGCAGTATTGGCTA+CGG - Chr1:79492329-79492348 MsG0180004553.01.T01:intron 35.0%
!!! ATCCCTTTTTAGCTAGCATA+CGG - Chr1:79492063-79492082 MsG0180004553.01.T01:intron 35.0%
AACACACTACTACCATTGTC+TGG - Chr1:79492304-79492323 MsG0180004553.01.T01:intron 40.0%
AGAACAATGTTGTGCAACAG+AGG - Chr1:79490428-79490447 MsG0180004553.01.T01:three_prime_UTR 40.0%
AGTTGAGGTTGTGCTTTATC+AGG - Chr1:79491934-79491953 MsG0180004553.01.T01:intron 40.0%
ATCCAAATCCACTAGCCATT+AGG + Chr1:79491539-79491558 None:intergenic 40.0%
CAATTCTCTCTTGTAGTTGG+AGG - Chr1:79492501-79492520 MsG0180004553.01.T01:CDS 40.0%
GACCGTATGCTAGCTAAAAA+GGG + Chr1:79492068-79492087 None:intergenic 40.0%
GATACCAACGCTCCAAAATT+TGG + Chr1:79491369-79491388 None:intergenic 40.0%
GGACAATTCTCTCTTGTAGT+TGG - Chr1:79492498-79492517 MsG0180004553.01.T01:CDS 40.0%
GTTGAGGTTGTGCTTTATCA+GGG - Chr1:79491935-79491954 MsG0180004553.01.T01:intron 40.0%
TCTTGTAGTTGGAGGTTTGT+TGG - Chr1:79492509-79492528 MsG0180004553.01.T01:CDS 40.0%
TTCAGCAGGGTGATAAACTA+GGG - Chr1:79492164-79492183 MsG0180004553.01.T01:intron 40.0%
TTGAGGTTGTGCTTTATCAG+GGG - Chr1:79491936-79491955 MsG0180004553.01.T01:intron 40.0%
TTTCAGCAGGGTGATAAACT+AGG - Chr1:79492163-79492182 MsG0180004553.01.T01:intron 40.0%
! GAAGATTTGAGGTTGAGAAG+TGG + Chr1:79490537-79490556 None:intergenic 40.0%
! GGAAATGAGAGAGGTTGATT+TGG + Chr1:79490574-79490593 None:intergenic 40.0%
! TGAGTTTGCGGACCAAATTT+TGG - Chr1:79491354-79491373 MsG0180004553.01.T01:intron 40.0%
! TTCAGCCCAGTTTTACTTAG+TGG - Chr1:79490729-79490748 MsG0180004553.01.T01:CDS 40.0%
!! TTCCTAATGGCTAGTGGATT+TGG - Chr1:79491534-79491553 MsG0180004553.01.T01:intron 40.0%
!!! AGCTGATGCTTTTGAGTTTG+CGG - Chr1:79491342-79491361 MsG0180004553.01.T01:intron 40.0%
AAAGAAGGAGCAGTTACTGG+TGG - Chr1:79491442-79491461 MsG0180004553.01.T01:intron 45.0%
ACCTTCCAGGTACTTCCTAA+TGG - Chr1:79491521-79491540 MsG0180004553.01.T01:intron 45.0%
ACGTTTGTCGTCTTTAACCG+AGG + Chr1:79492436-79492455 None:intergenic 45.0%
ACTGTTTCAGAGAACCTTCC+AGG - Chr1:79491508-79491527 MsG0180004553.01.T01:intron 45.0%
AGAAGTGGAGAGAGAGAGTT+GGG + Chr1:79490522-79490541 None:intergenic 45.0%
AGAGAGAGTTGGGAGGAAAA+AGG + Chr1:79490512-79490531 None:intergenic 45.0%
AGGTACTTCCTAATGGCTAG+TGG - Chr1:79491528-79491547 MsG0180004553.01.T01:intron 45.0%
CAAGGTTGTGCATGAAGGAA+GGG + Chr1:79490655-79490674 None:intergenic 45.0%
CAGAAAGAAGGAGCAGTTAC+TGG - Chr1:79491439-79491458 MsG0180004553.01.T01:intron 45.0%
CGTTTGTCGTCTTTAACCGA+GGG + Chr1:79492435-79492454 None:intergenic 45.0%
GAAGAGACAGAAGAAAAGCG+TGG - Chr1:79492477-79492496 MsG0180004553.01.T01:CDS 45.0%
GAGAGAGTTGGGAGGAAAAA+GGG + Chr1:79490511-79490530 None:intergenic 45.0%
GAGGAAAAAGGGTTGTCATG+AGG + Chr1:79490500-79490519 None:intergenic 45.0%
GGACCGTATGCTAGCTAAAA+AGG + Chr1:79492069-79492088 None:intergenic 45.0%
GGAGAGAAGGTGAAGATTTG+AGG + Chr1:79490548-79490567 None:intergenic 45.0%
GGGTTTGTAGGAAATGAGAG+AGG + Chr1:79490583-79490602 None:intergenic 45.0%
GGTTGTCATGAGGAAGATGA+GGG + Chr1:79490490-79490509 None:intergenic 45.0%
GTGGAAGAGGGTAATGACAA+GGG - Chr1:79491394-79491413 MsG0180004553.01.T01:intron 45.0%
TAATGAGCGTCCACCTAAAG+AGG - Chr1:79490782-79490801 MsG0180004553.01.T01:CDS 45.0%
TCAACCACATAGGCCTCTTT+AGG + Chr1:79490798-79490817 None:intergenic 45.0%
TCATTACCCTCTTCCACAGA+AGG + Chr1:79491391-79491410 None:intergenic 45.0%
TCCAGCATCATCAACCACAT+AGG + Chr1:79490808-79490827 None:intergenic 45.0%
TGGTATCCTTCTGTGGAAGA+GGG - Chr1:79491382-79491401 MsG0180004553.01.T01:intron 45.0%
TGTGGAAGAGGGTAATGACA+AGG - Chr1:79491393-79491412 MsG0180004553.01.T01:intron 45.0%
TTGCTCACTCATGCTCAACA+GGG - Chr1:79490672-79490691 MsG0180004553.01.T01:exon 45.0%
TTGGTATCCTTCTGTGGAAG+AGG - Chr1:79491381-79491400 MsG0180004553.01.T01:intron 45.0%
!! AAGGCAACGGATTTTCAGCA+GGG - Chr1:79492151-79492170 MsG0180004553.01.T01:intron 45.0%
!! ACTAGCCATTAGGAAGTACC+TGG + Chr1:79491529-79491548 None:intergenic 45.0%
!! GTTGATTTGGGTTGGAGAGA+AGG + Chr1:79490561-79490580 None:intergenic 45.0%
!! TCTCTGAAACAGTAGCATCG+AGG + Chr1:79491501-79491520 None:intergenic 45.0%
!! TGAGAGAGGTTGATTTGGGT+TGG + Chr1:79490569-79490588 None:intergenic 45.0%
ACCACATAGGCCTCTTTAGG+TGG + Chr1:79490795-79490814 None:intergenic 50.0%
AGGATCTGGAAGTCCGTCAA+TGG + Chr1:79492406-79492425 None:intergenic 50.0%
CCTACGGCTTGAACAAAAGC+AGG + Chr1:79491469-79491488 None:intergenic 50.0%
CTGTTGAGCATGAGTGAGCA+AGG + Chr1:79490673-79490692 None:intergenic 50.0%
CTTGCTCACTCATGCTCAAC+AGG - Chr1:79490671-79490690 MsG0180004553.01.T01:exon 50.0%
GAGAAGTGGAGAGAGAGAGT+TGG + Chr1:79490523-79490542 None:intergenic 50.0%
GCAAGGTTGTGCATGAAGGA+AGG + Chr1:79490656-79490675 None:intergenic 50.0%
GGGTTGTCATGAGGAAGATG+AGG + Chr1:79490491-79490510 None:intergenic 50.0%
GTCATGAGGAAGATGAGGGA+GGG + Chr1:79490486-79490505 None:intergenic 50.0%
GTGAGCAAGGTTGTGCATGA+AGG + Chr1:79490660-79490679 None:intergenic 50.0%
GTTGTGCATGAAGGAAGGGT+TGG + Chr1:79490651-79490670 None:intergenic 50.0%
TCCACCTAAAGAGGCCTATG+TGG - Chr1:79490791-79490810 MsG0180004553.01.T01:CDS 50.0%
TGTCATGAGGAAGATGAGGG+AGG + Chr1:79490487-79490506 None:intergenic 50.0%
! CGACTAGTTGCTGCCATTGA+CGG - Chr1:79492390-79492409 MsG0180004553.01.T01:CDS 50.0%
!! ATTGACGGACTTCCAGATCC+TGG - Chr1:79492405-79492424 MsG0180004553.01.T01:CDS 50.0%
!! CAAGGCAACGGATTTTCAGC+AGG - Chr1:79492150-79492169 MsG0180004553.01.T01:intron 50.0%
!! CCTGCTTTTGTTCAAGCCGT+AGG - Chr1:79491466-79491485 MsG0180004553.01.T01:intron 50.0%
!! GCCATTAGGAAGTACCTGGA+AGG + Chr1:79491525-79491544 None:intergenic 50.0%
!! GCCTATGTGGTTGATGATGC+TGG - Chr1:79490804-79490823 MsG0180004553.01.T01:CDS 50.0%
!! GGGTAATGACAAGGGTGTTG+TGG - Chr1:79491402-79491421 MsG0180004553.01.T01:intron 50.0%
!!! CGGACCAAATTTTGGAGCGT+TGG - Chr1:79491362-79491381 MsG0180004553.01.T01:intron 50.0%
AGTGGAGAGAGAGAGTTGGG+AGG + Chr1:79490519-79490538 None:intergenic 55.0%
GATGAGGGAGGGTTGGAATG+AGG + Chr1:79490475-79490494 None:intergenic 55.0%
GGGAGGGTTGGAATGAGGAA+AGG + Chr1:79490470-79490489 None:intergenic 55.0%
GTGCATGAAGGAAGGGTTGG+TGG + Chr1:79490648-79490667 None:intergenic 55.0%
TCTTTAACCGAGGGACCACC+AGG + Chr1:79492426-79492445 None:intergenic 55.0%
TGAGGAAGATGAGGGAGGGT+TGG + Chr1:79490482-79490501 None:intergenic 55.0%
!! GGAGCGTTGGTATCCTTCTG+TGG - Chr1:79491375-79491394 MsG0180004553.01.T01:intron 55.0%
TCCAGATCCTGGTGGTCCCT+CGG - Chr1:79492416-79492435 MsG0180004553.01.T01:CDS 60.0%
! GACGGACTTCCAGATCCTGG+TGG - Chr1:79492408-79492427 MsG0180004553.01.T01:CDS 60.0%
ACCGAGGGACCACCAGGATC+TGG + Chr1:79492420-79492439 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79490410 79492850 79490410 ID=MsG0180004553.01;Name=MsG0180004553.01
Chr1 mRNA 79490410 79492850 79490410 ID=MsG0180004553.01.T01;Parent=MsG0180004553.01;Name=MsG0180004553.01.T01;_AED=0.26;_eAED=0.26;_QI=91|1|1|1|1|1|3|263|289
Chr1 exon 79490410 79490920 79490410 ID=MsG0180004553.01.T01:exon:45705;Parent=MsG0180004553.01.T01
Chr1 exon 79491731 79491923 79491731 ID=MsG0180004553.01.T01:exon:45704;Parent=MsG0180004553.01.T01
Chr1 exon 79492331 79492850 79492331 ID=MsG0180004553.01.T01:exon:45703;Parent=MsG0180004553.01.T01
Chr1 five_prime_UTR 79492760 79492850 79492760 ID=MsG0180004553.01.T01:five_prime_utr;Parent=MsG0180004553.01.T01
Chr1 CDS 79492331 79492759 79492331 ID=MsG0180004553.01.T01:cds;Parent=MsG0180004553.01.T01
Chr1 CDS 79491731 79491923 79491731 ID=MsG0180004553.01.T01:cds;Parent=MsG0180004553.01.T01
Chr1 CDS 79490673 79490920 79490673 ID=MsG0180004553.01.T01:cds;Parent=MsG0180004553.01.T01
Chr1 three_prime_UTR 79490410 79490672 79490410 ID=MsG0180004553.01.T01:three_prime_utr;Parent=MsG0180004553.01.T01
Gene Sequence

>MsG0180004553.01.T01

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTTCTCAACCTCAAATCTTCACCTTCTCTCCAACCCAAATCAACCTCTCTCATTTCCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCCTTCCTTCATGCACAACCTTGCTCACTCATGCTCAACAGGGTCTTGCAGCTTTAGCTATCACTTTAGCATTGAATTTCAGCCCAGTTTTACTTAGTGGTAATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTCACTAAGTCTGATTTGAAACGTTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGTAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACTGTTTCAGAGAACCTTCCAGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACTGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>MsG0180004553.01.T01

MTTLFPPNSLSPLLNLKSSPSLQPKSTSLISYKPIVSNLKKTQTLSLKPPTLPSCTTLLTHAQQGLAALAITLALNFSPVLLSGNALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*