AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016354.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016354.01.T03 MTR_3g088040 99.107 112 1 0 1 112 1 112 1.24e-75 225
MsG0380016354.01.T04 MTR_3g088040 99.107 112 1 0 1 112 1 112 1.24e-75 225
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016354.01.T03 AT1G44575 58.036 112 39 3 1 112 1 104 2.83e-24 92.4
MsG0380016354.01.T03 AT1G44575 58.036 112 39 3 1 112 1 104 1.15e-23 92.0
MsG0380016354.01.T03 AT1G44575 58.036 112 39 3 1 112 1 104 1.15e-23 92.0
MsG0380016354.01.T04 AT1G44575 58.036 112 39 3 1 112 1 104 2.83e-24 92.4
MsG0380016354.01.T04 AT1G44575 58.036 112 39 3 1 112 1 104 1.15e-23 92.0
MsG0380016354.01.T04 AT1G44575 58.036 112 39 3 1 112 1 104 1.15e-23 92.0

Find 79 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCTAACACTTGTTAAT+TGG 0.142831 3:-82396430 MsG0380016354.01.T02:five_prime_UTR
AGTGGTTCAATTTCAGTAAT+TGG 0.150098 3:+82395431 None:intergenic
TTGACAAATATTAATTAATT+AGG 0.179195 3:-82396202 MsG0380016354.01.T02:five_prime_UTR
TGCATGTTAGGTCCTTTATT+TGG 0.212751 3:-82395577 MsG0380016354.01.T02:intron
GATGGTATCTTTGGAACTTC+TGG 0.221695 3:-82397099 MsG0380016354.01.T02:five_prime_UTR
GTATATCATGCAAATTAAAA+AGG 0.234243 3:-82396060 MsG0380016354.01.T02:five_prime_UTR
GTCACGATTGTTTCATTTGC+AGG 0.254257 3:-82396024 MsG0380016354.01.T02:five_prime_UTR
AACAAACAATTCATTGGATT+TGG 0.255758 3:+82395549 None:intergenic
CATAACAATGCAAGTCTTCA+TGG 0.260507 3:+82396269 None:intergenic
AATAATCTCGCAAATGTTAT+AGG 0.265832 3:+82396860 None:intergenic
TGGATCCTTGACTAAGGTTT+TGG 0.276474 3:-82396574 MsG0380016354.01.T02:five_prime_UTR
TTGATTGGAGAAATTATTAC+TGG 0.283745 3:-82395494 MsG0380016354.01.T02:intron
TTTGGAACTTCTGGAGGATT+TGG 0.286142 3:-82397090 MsG0380016354.01.T02:five_prime_UTR
AAGGTTGAAGATGGTATCTT+TGG 0.291595 3:-82397108 MsG0380016354.01.T02:five_prime_UTR
AGAGGCTCAGCTTCATAAAT+TGG 0.298533 3:+82395934 None:intergenic
CATTTGCAGGCATCAATATT+AGG 0.305704 3:-82396011 MsG0380016354.01.T02:five_prime_UTR
TTCATTGCTGCTTTGAATCC+TGG 0.310194 3:-82395383 MsG0380016354.01.T02:intron
TGTTGGAAGATTGGCTCAAT+TGG 0.313349 3:-82395530 MsG0380016354.01.T02:intron
AATATTAATTAATTAGGATT+AGG 0.316892 3:-82396196 MsG0380016354.01.T02:five_prime_UTR
CCATCTTCAACCTTTGGCTT+TGG 0.320599 3:+82397117 None:intergenic
TCTTCCAACAAACAATTCAT+TGG 0.342233 3:+82395543 None:intergenic
AGCACAATTGAATTGGAAAC+TGG 0.354389 3:-82395961 MsG0380016354.01.T02:five_prime_UTR
GATTTGGTGAATCCAAATAA+AGG 0.360093 3:+82395565 None:intergenic
GAATTCTAGCACAATTGAAT+TGG 0.364031 3:-82395968 MsG0380016354.01.T02:five_prime_UTR
GTGGTTCAATTTCAGTAATT+GGG 0.365857 3:+82395432 None:intergenic
ATTGACTTAAGTAATAGTTT+AGG 0.375597 3:+82396794 None:intergenic
TTAGATCAGCTCTTGGTCTC+AGG 0.379018 3:-82395795 MsG0380016354.01.T02:CDS
GTTACAAAAGTGCCAGTTCC+AGG 0.380949 3:+82395365 None:intergenic
TGAATTGTTTGTTGGAAGAT+TGG 0.385211 3:-82395539 MsG0380016354.01.T02:intron
AAGATACCATCTTCAACCTT+TGG 0.387880 3:+82397111 None:intergenic
AAATCCAATGAATTGTTTGT+TGG 0.392325 3:-82395547 MsG0380016354.01.T02:intron
AAGCAGAATGAACTCTTTGT+TGG 0.396845 3:-82397060 MsG0380016354.01.T02:five_prime_UTR
TATACATTATTTAAGTAGTA+AGG 0.400009 3:+82395108 None:intergenic
GTTGGAAGATTGGCTCAATT+GGG 0.400071 3:-82395529 MsG0380016354.01.T02:intron
TGGAGAAATTATTACTGGTA+AGG 0.421923 3:-82395489 MsG0380016354.01.T02:intron
ATATTAGGTGAAGCATTAAC+TGG 0.440539 3:-82395996 MsG0380016354.01.T02:five_prime_UTR
GTTAGAGTTGCAAATGGACT+TGG 0.453206 3:+82396443 None:intergenic
TTCACCTTGCTAGGAGCCAT+TGG 0.454770 3:-82395892 MsG0380016354.01.T02:five_prime_UTR
GGAGTTATTCCTCCAGGAAA+AGG 0.455401 3:-82395820 MsG0380016354.01.T02:CDS
GCTGCTTTGAATCCTGGAAC+TGG 0.462882 3:-82395377 MsG0380016354.01.T02:intron
TGTTTATAATAGTGACTAGC+AGG 0.471164 3:-82395663 MsG0380016354.01.T02:intron
CTAGGAGCCATTGGAGCTCT+AGG 0.483439 3:-82395883 MsG0380016354.01.T02:five_prime_UTR
GCTCAGCTCAACATTGAGAC+TGG 0.484090 3:-82395458 MsG0380016354.01.T02:intron
TATACCCTAAAATAAAATGA+AGG 0.486869 3:+82395199 None:intergenic
ACAAGTGTTAGAGTTGCAAA+TGG 0.490836 3:+82396437 None:intergenic
CTCAGCTCAACATTGAGACT+GGG 0.497814 3:-82395457 MsG0380016354.01.T02:intron
GAAAATAAGACAAGTTGGTA+TGG 0.500015 3:+82396975 None:intergenic
GGAATAACTCCTCCAGTGTT+AGG 0.502221 3:+82395832 None:intergenic
GGAGAAATTATTACTGGTAA+GGG 0.507917 3:-82395488 MsG0380016354.01.T02:intron
GTTGGTCGTGTTGCTATGAT+CGG 0.516308 3:-82397042 MsG0380016354.01.T02:five_prime_UTR
TTGAGAACATTTGACAGCAT+GGG 0.522721 3:+82396305 None:intergenic
GCAATGAAAATAAGACAAGT+TGG 0.525340 3:+82396970 None:intergenic
AAGGGGTGGATCCTTGACTA+AGG 0.538362 3:-82396580 MsG0380016354.01.T02:five_prime_UTR
TAGATCAGCTCTTGGTCTCA+GGG 0.538741 3:-82395794 MsG0380016354.01.T02:CDS
GGTGAAGCATTAACTGGCAA+AGG 0.540137 3:-82395990 MsG0380016354.01.T02:five_prime_UTR
TGATACTCTAGTCTTATGTA+AGG 0.541107 3:-82395135 MsG0380016354.01.T02:intron
AAAGGATTTAGATCAGCTCT+TGG 0.544811 3:-82395802 MsG0380016354.01.T02:CDS
ATTGAGAACATTTGACAGCA+TGG 0.547823 3:+82396304 None:intergenic
ATGGGCGGATCTAATATGTA+TGG 0.552571 3:+82396323 None:intergenic
GGTATCTTTGGAACTTCTGG+AGG 0.556616 3:-82397096 MsG0380016354.01.T02:five_prime_UTR
CCAAAGCCAAAGGTTGAAGA+TGG 0.567917 3:-82397117 MsG0380016354.01.T02:five_prime_UTR
ATACCCTAAAATAAAATGAA+GGG 0.568348 3:+82395200 None:intergenic
ACTGGAGGAGTTATTCCTCC+AGG 0.573363 3:-82395826 MsG0380016354.01.T02:CDS
AACAACTCTATCATCTCCAT+TGG 0.578688 3:-82395235 MsG0380016354.01.T02:intron
AGCTCCAATGGCTCCTAGCA+AGG 0.581456 3:+82395888 None:intergenic
AATGAACCTGTCAAAAGGGG+TGG 0.587894 3:-82396594 MsG0380016354.01.T02:five_prime_UTR
ACGGTCACCTAGAGCTCCAA+TGG 0.591758 3:+82395876 None:intergenic
TCAGCTCTTGGTCTCAGGGA+AGG 0.594171 3:-82395790 MsG0380016354.01.T02:CDS
AGGGACAAATGTGTAACCAA+TGG 0.597527 3:+82395219 None:intergenic
AGAACATTTGACAGCATGGG+CGG 0.606922 3:+82396308 None:intergenic
GCTCTTGGTCTCAGGGAAGG+AGG 0.614124 3:-82395787 MsG0380016354.01.T02:intron
CCACACCAAAACCTTAGTCA+AGG 0.616505 3:+82396569 None:intergenic
GTTGATGATGAGCCTAACAC+TGG 0.618935 3:-82395844 MsG0380016354.01.T02:intron
ATAACATTGAACAACACTAG+TGG 0.664923 3:+82395413 None:intergenic
TCAGCTCAACATTGAGACTG+GGG 0.690397 3:-82395456 MsG0380016354.01.T02:intron
ATTGGAGCTCTAGGTGACCG+TGG 0.710208 3:-82395874 MsG0380016354.01.T02:five_prime_UTR
CATCATCAACAAATTTACCA+CGG 0.716251 3:+82395857 None:intergenic
GATGATGAGCCTAACACTGG+AGG 0.724745 3:-82395841 MsG0380016354.01.T02:CDS
GTAAAGTGAATATATCAGTG+AGG 0.728168 3:+82396997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATTAATTAGGATT+AGG - Chr3:82392959-82392978 MsG0380016354.01.T02:intron 10.0%
!! CATCATATATAATTAATTAA+AGG - Chr3:82395529-82395548 MsG0380016354.01.T02:intron 10.0%
!! CTATAAAAATTAAATGTTAA+AGG + Chr3:82392772-82392791 None:intergenic 10.0%
!! TATATTAATATTTACACAAT+TGG - Chr3:82395120-82395139 MsG0380016354.01.T02:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG - Chr3:82392953-82392972 MsG0380016354.01.T02:intron 10.0%
!! TTTAAATCAATTATTAAGTT+TGG + Chr3:82394284-82394303 None:intergenic 10.0%
!!! AATTCTAAAATTTAAATGAT+AGG - Chr3:82395068-82395087 MsG0380016354.01.T02:intron 10.0%
!!! ATTCTAAAATTTAAATGATA+GGG - Chr3:82395069-82395088 MsG0380016354.01.T02:intron 10.0%
!!! GTTTTTTTATGAAAAAATTT+AGG - Chr3:82393988-82394007 MsG0380016354.01.T02:intron 10.0%
!!! TAAATTCAGAAATATATTTT+AGG + Chr3:82394947-82394966 None:intergenic 10.0%
!!! TACATAATTTTTAATATCAT+TGG + Chr3:82392638-82392657 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG - Chr3:82392798-82392817 MsG0380016354.01.T02:intron 10.0%
!! ACTAATAAGTTTAAGAAATT+AGG + Chr3:82397131-82397150 None:intergenic 15.0%
!! GAATTATTTCATTCAAAAAT+TGG + Chr3:82394566-82394585 None:intergenic 15.0%
!! TAAATTATTACTATAGAGAA+GGG + Chr3:82395689-82395708 None:intergenic 15.0%
!! TATACATTATTTAAGTAGTA+AGG + Chr3:82394050-82394069 None:intergenic 15.0%
!! TATATCATGCAAATTAAAAA+GGG - Chr3:82393096-82393115 MsG0380016354.01.T02:intron 15.0%
!! TATTATTTATTATAGAGAAG+TGG - Chr3:82396546-82396565 MsG0380016354.01.T02:five_prime_UTR 15.0%
!! TGTATAAACATAAATAGAAA+TGG + Chr3:82395902-82395921 None:intergenic 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG - Chr3:82392808-82392827 MsG0380016354.01.T02:intron 15.0%
!!! AAGATTTTAAATGTATGATA+AGG + Chr3:82397484-82397503 None:intergenic 15.0%
!!! ATACATTTAAAATCTTGTTT+TGG - Chr3:82397488-82397507 MsG0380016354.01.T02:five_prime_UTR 15.0%
!!! ATTTTCAAAATTATTAAGGT+TGG - Chr3:82393527-82393546 MsG0380016354.01.T02:intron 15.0%
!!! CAATTTTAGTAATTTTATTG+AGG - Chr3:82392676-82392695 MsG0380016354.01.T02:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG - Chr3:82392797-82392816 MsG0380016354.01.T02:intron 15.0%
!!! TTATGTTTTATCACAAATTT+GGG - Chr3:82394912-82394931 MsG0380016354.01.T02:intron 15.0%
!!! TTCAAAATGTTCTTTAAAAA+TGG - Chr3:82393015-82393034 MsG0380016354.01.T02:intron 15.0%
!!! TTCTAAAATTTAAATGATAG+GGG - Chr3:82395070-82395089 MsG0380016354.01.T02:intron 15.0%
!!! TTTCAATAATAATTTTGCTA+GGG - Chr3:82395934-82395953 MsG0380016354.01.T02:five_prime_UTR 15.0%
!!! TTTTGAAATTCAATTTGATT+TGG - Chr3:82396358-82396377 MsG0380016354.01.T02:five_prime_UTR 15.0%
!! AAATGTTAACAATGTTCTTA+AGG + Chr3:82395398-82395417 None:intergenic 20.0%
!! AATTAATTGAAATGAAGGAA+AGG - Chr3:82397419-82397438 MsG0380016354.01.T02:five_prime_UTR 20.0%
!! ATAAATCATAATACCTCAAA+TGG - Chr3:82391450-82391469 MsG0380016354.01.T02:CDS 20.0%
!! ATACCCTAAAATAAAATGAA+GGG + Chr3:82393958-82393977 None:intergenic 20.0%
!! ATGAATATGTAAATCATGAT+CGG + Chr3:82397635-82397654 None:intergenic 20.0%
!! ATTAATTGAAATGAAGGAAA+GGG - Chr3:82397420-82397439 MsG0380016354.01.T02:five_prime_UTR 20.0%
!! CTAGAAATTAATTGAAATGA+AGG - Chr3:82397414-82397433 MsG0380016354.01.T02:five_prime_UTR 20.0%
!! GTAAATTATTACTATAGAGA+AGG + Chr3:82395690-82395709 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG - Chr3:82393095-82393114 MsG0380016354.01.T02:intron 20.0%
!! TACTTTGTCATAAATATAAG+TGG + Chr3:82394744-82394763 None:intergenic 20.0%
!! TATACCCTAAAATAAAATGA+AGG + Chr3:82393959-82393978 None:intergenic 20.0%
!! TGTTTGATGAAATATATTTC+AGG - Chr3:82392004-82392023 MsG0380016354.01.T02:intron 20.0%
!! TTCAGACATATAAAAATATG+AGG + Chr3:82395050-82395069 None:intergenic 20.0%
!!! AACAATGGTATTTTTATATG+TGG - Chr3:82394885-82394904 MsG0380016354.01.T02:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG - Chr3:82393566-82393585 MsG0380016354.01.T02:intron 20.0%
!!! ACGTAGAAAAAATTGTTTTA+TGG - Chr3:82395308-82395327 MsG0380016354.01.T02:intron 20.0%
!!! ATTGACTTAAGTAATAGTTT+AGG + Chr3:82392364-82392383 None:intergenic 20.0%
!!! GTTATGTTTTATCACAAATT+TGG - Chr3:82394911-82394930 MsG0380016354.01.T02:intron 20.0%
!!! GTTTCAATAATAATTTTGCT+AGG - Chr3:82395933-82395952 MsG0380016354.01.T02:five_prime_UTR 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG + Chr3:82393011-82393030 None:intergenic 20.0%
!!! TATGTTTTATCACAAATTTG+GGG - Chr3:82394913-82394932 MsG0380016354.01.T02:intron 20.0%
!!! TGATTTTTTATACTTCATAG+AGG - Chr3:82396982-82397001 MsG0380016354.01.T02:five_prime_UTR 20.0%
!!! TTCAATAATAATTTTGCTAG+GGG - Chr3:82395935-82395954 MsG0380016354.01.T02:five_prime_UTR 20.0%
!!! TTTAAAGAGGAATATTTTAG+AGG - Chr3:82394182-82394201 MsG0380016354.01.T02:intron 20.0%
!!! TTTTAAGTTTCAATGAACTT+TGG + Chr3:82396156-82396175 None:intergenic 20.0%
! AAAAAAATGAACCTGTCAAA+AGG - Chr3:82392556-82392575 MsG0380016354.01.T02:intron 25.0%
! AAAAAATGAACCTGTCAAAA+GGG - Chr3:82392557-82392576 MsG0380016354.01.T02:intron 25.0%
! AAACAATAAACACTACTACA+TGG - Chr3:82396506-82396525 MsG0380016354.01.T02:five_prime_UTR 25.0%
! AAATCCAATGAATTGTTTGT+TGG - Chr3:82393608-82393627 MsG0380016354.01.T02:intron 25.0%
! AACAAACAATTCATTGGATT+TGG + Chr3:82393609-82393628 None:intergenic 25.0%
! AATAATCTCGCAAATGTTAT+AGG + Chr3:82392298-82392317 None:intergenic 25.0%
! AATTACAGTGTCAAAGATTA+AGG - Chr3:82391760-82391779 MsG0380016354.01.T02:intron 25.0%
! ACATACATGATTAATTTCCA+AGG + Chr3:82396899-82396918 None:intergenic 25.0%
! ACTTAAAATGCTCAACAAAA+AGG - Chr3:82396168-82396187 MsG0380016354.01.T02:five_prime_UTR 25.0%
! AGGTGAAAATGATGAAAAAT+AGG + Chr3:82393250-82393269 None:intergenic 25.0%
! ATAATCATTTAATCCACTCA+AGG + Chr3:82397335-82397354 None:intergenic 25.0%
! ATCTTTAATAATAAGGTGTG+TGG + Chr3:82391569-82391588 None:intergenic 25.0%
! ATTAAGAGATTGAACTTAAG+TGG - Chr3:82394495-82394514 MsG0380016354.01.T02:intron 25.0%
! ATTCAATTTAACTAATCGGT+TGG + Chr3:82396820-82396839 None:intergenic 25.0%
! ATTGGACCAATAATTATATG+CGG - Chr3:82395138-82395157 MsG0380016354.01.T02:intron 25.0%
! CAACAAAAAGGAAAAAACTA+AGG - Chr3:82396180-82396199 MsG0380016354.01.T02:five_prime_UTR 25.0%
! CAATCGAATTTCAGATTAAT+AGG - Chr3:82394612-82394631 MsG0380016354.01.T02:intron 25.0%
! CGTCATTCAATTTAACTAAT+CGG + Chr3:82396824-82396843 None:intergenic 25.0%
! GAAAAACACTTAGAATTTGA+AGG + Chr3:82391819-82391838 None:intergenic 25.0%
! GAAATACTAGAAAATCCATT+TGG + Chr3:82397543-82397562 None:intergenic 25.0%
! GATTAATCATGAATTCTATC+TGG - Chr3:82394840-82394859 MsG0380016354.01.T02:intron 25.0%
! GGATTAAATGATTATTTGTC+CGG - Chr3:82397340-82397359 MsG0380016354.01.T02:five_prime_UTR 25.0%
! TAATTTCCAAGGCAAAATTT+AGG + Chr3:82396888-82396907 None:intergenic 25.0%
! TGAAAACTACTGTTTGTAAT+AGG - Chr3:82396926-82396945 MsG0380016354.01.T02:five_prime_UTR 25.0%
! TTAAATGTATGATAAGGCTA+TGG + Chr3:82397478-82397497 None:intergenic 25.0%
! TTCAATTTAACTAATCGGTT+GGG + Chr3:82396819-82396838 None:intergenic 25.0%
! TTCTCTTCAATCACAAAAAA+TGG - Chr3:82395741-82395760 MsG0380016354.01.T02:intron 25.0%
! TTGATTGGAGAAATTATTAC+TGG - Chr3:82393661-82393680 MsG0380016354.01.T02:intron 25.0%
! TTGTGATAAATTTCCATTTG+AGG + Chr3:82391466-82391485 None:intergenic 25.0%
!! ACATGATCATTTTGTATTTG+AGG - Chr3:82395497-82395516 MsG0380016354.01.T02:intron 25.0%
!! ATATTTAGCAAGCTTTTACT+TGG - Chr3:82394689-82394708 MsG0380016354.01.T02:intron 25.0%
!! ATTTGTTGAACAAAAACGAT+TGG - Chr3:82396404-82396423 MsG0380016354.01.T02:five_prime_UTR 25.0%
!! CATGATCATTTTGTATTTGA+GGG - Chr3:82395498-82395517 MsG0380016354.01.T02:intron 25.0%
!! CGATTAGTTAAATTGAATGA+CGG - Chr3:82396822-82396841 MsG0380016354.01.T02:five_prime_UTR 25.0%
!! GAAACATTTTTCATTTGCTT+AGG - Chr3:82397272-82397291 MsG0380016354.01.T02:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG + Chr3:82393068-82393087 None:intergenic 25.0%
!! TTTAAAACCCCATTCTTAAT+GGG + Chr3:82394645-82394664 None:intergenic 25.0%
!!! AAGCTTTAAAAGATAGAAGA+TGG - Chr3:82396430-82396449 MsG0380016354.01.T02:five_prime_UTR 25.0%
!!! CATTGCAATATTTTGACAAT+AGG + Chr3:82397051-82397070 None:intergenic 25.0%
!!! GTTTTAGTACATCTTAATGT+TGG + Chr3:82395477-82395496 None:intergenic 25.0%
!!! TAGTTATGTTGTGTGTTTTT+TGG + Chr3:82395627-82395646 None:intergenic 25.0%
!!! TCTTTTAAGTACAAACAAAG+TGG + Chr3:82393847-82393866 None:intergenic 25.0%
!!! TCTTTTGTTATTTTGAGAAG+AGG - Chr3:82396456-82396475 MsG0380016354.01.T02:five_prime_UTR 25.0%
!!! TGTCCCTTCATTTTATTTTA+GGG - Chr3:82393952-82393971 MsG0380016354.01.T02:intron 25.0%
!!! TTGTCCCTTCATTTTATTTT+AGG - Chr3:82393951-82393970 MsG0380016354.01.T02:intron 25.0%
!!! TTTTAAAACCCCATTCTTAA+TGG + Chr3:82394646-82394665 None:intergenic 25.0%
AAAAATGAACCTGTCAAAAG+GGG - Chr3:82392558-82392577 MsG0380016354.01.T02:intron 30.0%
AAATTGAATGACGGTTTAGA+CGG - Chr3:82396831-82396850 MsG0380016354.01.T02:five_prime_UTR 30.0%
AATATGTAAATCATGATCGG+AGG + Chr3:82397632-82397651 None:intergenic 30.0%
AATTATATGCGGCCAATAAT+TGG - Chr3:82395149-82395168 MsG0380016354.01.T02:intron 30.0%
AATTGGACTAATTGAGTGAT+TGG - Chr3:82395166-82395185 MsG0380016354.01.T02:intron 30.0%
ACTTAGAATTTGAAGGAAGT+GGG + Chr3:82391812-82391831 None:intergenic 30.0%
AGAGTCTCTTTAGACTTTAA+AGG - Chr3:82394156-82394175 MsG0380016354.01.T02:intron 30.0%
AGGAAGAAGTAAAAAAGGAA+AGG + Chr3:82395662-82395681 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG + Chr3:82393727-82393746 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG + Chr3:82393745-82393764 None:intergenic 30.0%
ATAATTGGCATACACGAAAA+AGG - Chr3:82394399-82394418 MsG0380016354.01.T02:intron 30.0%
ATACGGAAATTTAGTAGAGT+GGG + Chr3:82395449-82395468 None:intergenic 30.0%
ATCTAAATCATCATGACTAC+CGG + Chr3:82397362-82397381 None:intergenic 30.0%
ATGAAAAAATTTAGGCTGAG+AGG - Chr3:82393996-82394015 MsG0380016354.01.T02:intron 30.0%
ATGATGAAAAATAGGAGAAG+AGG + Chr3:82393242-82393261 None:intergenic 30.0%
ATTATTACTATAGAGAAGGG+AGG + Chr3:82395686-82395705 None:intergenic 30.0%
ATTGGACTAATTGAGTGATT+GGG - Chr3:82395167-82395186 MsG0380016354.01.T02:intron 30.0%
CACTCAATTAGTCCAATTAT+TGG + Chr3:82395164-82395183 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG + Chr3:82393301-82393320 None:intergenic 30.0%
CATTGTCACAAACATTGAAA+AGG - Chr3:82397450-82397469 MsG0380016354.01.T02:five_prime_UTR 30.0%
CTTCAAGAACTATACAACAA+TGG - Chr3:82394870-82394889 MsG0380016354.01.T02:intron 30.0%
GAATTCTAGCACAATTGAAT+TGG - Chr3:82393187-82393206 MsG0380016354.01.T02:intron 30.0%
GAGTCTCTTTAGACTTTAAA+GGG - Chr3:82394157-82394176 MsG0380016354.01.T02:intron 30.0%
GCAATGAAAATAAGACAAGT+TGG + Chr3:82392188-82392207 None:intergenic 30.0%
GGAGAAATTATTACTGGTAA+GGG - Chr3:82393667-82393686 MsG0380016354.01.T02:intron 30.0%
GTAAAGTGAATATATCAGTG+AGG + Chr3:82392161-82392180 None:intergenic 30.0%
GTGGTTCAATTTCAGTAATT+GGG + Chr3:82393726-82393745 None:intergenic 30.0%
GTGTATGCCAATTATGAAAA+TGG + Chr3:82394394-82394413 None:intergenic 30.0%
TACACGAAAAAGGTTTAACA+TGG - Chr3:82394409-82394428 MsG0380016354.01.T02:intron 30.0%
TACATACAGTTAAGAACGTT+CGG + Chr3:82396757-82396776 None:intergenic 30.0%
TATTGGCCGCATATAATTAT+TGG + Chr3:82395147-82395166 None:intergenic 30.0%
TCTCGTCTATTGTACTATAT+TGG + Chr3:82391493-82391512 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG + Chr3:82393615-82393634 None:intergenic 30.0%
TGGAGAAATTATTACTGGTA+AGG - Chr3:82393666-82393685 MsG0380016354.01.T02:intron 30.0%
TGGTCAATATATGTCTTGAA+AGG - Chr3:82394806-82394825 MsG0380016354.01.T02:intron 30.0%
TGTTTATAATAGTGACTAGC+AGG - Chr3:82393492-82393511 MsG0380016354.01.T02:intron 30.0%
TTAAAGTCTAAAGAGACTCT+TGG + Chr3:82394156-82394175 None:intergenic 30.0%
TTATTACTATAGAGAAGGGA+GGG + Chr3:82395685-82395704 None:intergenic 30.0%
! AACTTTTGATCTAACTGACT+TGG - Chr3:82396949-82396968 MsG0380016354.01.T02:five_prime_UTR 30.0%
! AAGCTTTTGCTTGAAAATTC+TGG - Chr3:82394778-82394797 MsG0380016354.01.T02:intron 30.0%
! AGCTTTTGCTTGAAAATTCT+GGG - Chr3:82394779-82394798 MsG0380016354.01.T02:intron 30.0%
! AGTCTCTTTAGACTTTAAAG+GGG - Chr3:82394158-82394177 MsG0380016354.01.T02:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG - Chr3:82393159-82393178 MsG0380016354.01.T02:intron 30.0%
! ATGTTTCTATGCATTCCAAT+AGG + Chr3:82397259-82397278 None:intergenic 30.0%
! CAACTCTAACACTTGTTAAT+TGG - Chr3:82392725-82392744 MsG0380016354.01.T02:intron 30.0%
! TAATCTGAAATTCGATTGAG+AGG + Chr3:82394610-82394629 None:intergenic 30.0%
! TCTCATTTTCTGTTTCCAAA+TGG - Chr3:82397525-82397544 MsG0380016354.01.T02:five_prime_UTR 30.0%
! TCTCTTATTTATCTCTCTCA+AGG - Chr3:82397225-82397244 MsG0380016354.01.T02:intron 30.0%
! TCTTAATGTTGGAAAGCATA+CGG + Chr3:82395466-82395485 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG - Chr3:82393616-82393635 MsG0380016354.01.T02:intron 30.0%
! TTTTCCTTTAACGGTATGTT+TGG + Chr3:82394359-82394378 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG + Chr3:82392183-82392202 None:intergenic 30.0%
!! GATTTGGTGAATCCAAATAA+AGG + Chr3:82393593-82393612 None:intergenic 30.0%
!! TGATACTCTAGTCTTATGTA+AGG - Chr3:82394020-82394039 MsG0380016354.01.T02:intron 30.0%
!!! ACTTTAAAGGGGTTTTAAAG+AGG - Chr3:82394169-82394188 MsG0380016354.01.T02:intron 30.0%
!!! GTCCAAAGTCTTTTTTACTT+TGG - Chr3:82394130-82394149 MsG0380016354.01.T02:intron 30.0%
AAAAGGAAAGGAAACTGACA+AGG + Chr3:82395650-82395669 None:intergenic 35.0%
AAAATGAGTAGTACCTTAGC+AGG + Chr3:82391891-82391910 None:intergenic 35.0%
AAAGGATTTAGATCAGCTCT+TGG - Chr3:82393353-82393372 MsG0380016354.01.T02:CDS 35.0%
AAATCATGATCGGAGGAATT+AGG + Chr3:82397625-82397644 None:intergenic 35.0%
AAATGAGTAGTACCTTAGCA+GGG + Chr3:82391890-82391909 None:intergenic 35.0%
AACAACTCTATCATCTCCAT+TGG - Chr3:82393920-82393939 MsG0380016354.01.T02:intron 35.0%
AACGAAACATCAGAAAACCT+AGG + Chr3:82391786-82391805 None:intergenic 35.0%
AAGATACCATCTTCAACCTT+TGG + Chr3:82392047-82392066 None:intergenic 35.0%
AAGCAGAATGAACTCTTTGT+TGG - Chr3:82392095-82392114 MsG0380016354.01.T02:intron 35.0%
AAGGTTGAAGATGGTATCTT+TGG - Chr3:82392047-82392066 MsG0380016354.01.T02:intron 35.0%
AATAATAAGGTGTGTGGATG+TGG + Chr3:82391563-82391582 None:intergenic 35.0%
AATGAACTTTGGTTGTTGCA+TGG + Chr3:82396145-82396164 None:intergenic 35.0%
AATTGAATGACGGTTTAGAC+GGG - Chr3:82396832-82396851 MsG0380016354.01.T02:five_prime_UTR 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG + Chr3:82392721-82392740 None:intergenic 35.0%
AGCACAATTGAATTGGAAAC+TGG - Chr3:82393194-82393213 MsG0380016354.01.T02:intron 35.0%
ATCACGTACATTCACTACTT+TGG - Chr3:82391839-82391858 MsG0380016354.01.T02:intron 35.0%
ATTGAGAACATTTGACAGCA+TGG + Chr3:82392854-82392873 None:intergenic 35.0%
ATTTAACTAATCGGTTGGGT+CGG + Chr3:82396815-82396834 None:intergenic 35.0%
ATTTCCATATAAGGCAGTGA+AGG + Chr3:82396120-82396139 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG + Chr3:82391813-82391832 None:intergenic 35.0%
CAGGTGAGAAACAAACTTAA+AGG + Chr3:82396219-82396238 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG + Chr3:82392889-82392908 None:intergenic 35.0%
CATACGGAAATTTAGTAGAG+TGG + Chr3:82395450-82395469 None:intergenic 35.0%
CATTTGCAGGCATCAATATT+AGG - Chr3:82393144-82393163 MsG0380016354.01.T02:intron 35.0%
CCCTTAGATATATCATTCTC+CGG + Chr3:82397392-82397411 None:intergenic 35.0%
CCGGAGAATGATATATCTAA+GGG - Chr3:82397389-82397408 MsG0380016354.01.T02:five_prime_UTR 35.0%
GAAGTGATATGATGTGGATT+GGG - Chr3:82395555-82395574 MsG0380016354.01.T02:intron 35.0%
GACACTGTAATTGAAGCAAA+GGG + Chr3:82391752-82391771 None:intergenic 35.0%
GAGCTAACATAGTATAGCAA+TGG - Chr3:82391665-82391684 MsG0380016354.01.T02:intron 35.0%
GGAAAAGGGTCTAGATTTAA+TGG + Chr3:82396022-82396041 None:intergenic 35.0%
GGCCAAAGTAAAAAAGACTT+TGG + Chr3:82394135-82394154 None:intergenic 35.0%
TCATCCAAACATACCGTTAA+AGG - Chr3:82394352-82394371 MsG0380016354.01.T02:intron 35.0%
TGAAGTGATATGATGTGGAT+TGG - Chr3:82395554-82395573 MsG0380016354.01.T02:intron 35.0%
TGACACTGTAATTGAAGCAA+AGG + Chr3:82391753-82391772 None:intergenic 35.0%
TGCATGGCAATTTCCATATA+AGG + Chr3:82396129-82396148 None:intergenic 35.0%
TGCATGTTAGGTCCTTTATT+TGG - Chr3:82393578-82393597 MsG0380016354.01.T02:intron 35.0%
TGTTAAAAAGCCAAAGCCAA+AGG - Chr3:82392028-82392047 MsG0380016354.01.T02:intron 35.0%
TGTTTCTCACCTGAAATAGT+AGG - Chr3:82396226-82396245 MsG0380016354.01.T02:five_prime_UTR 35.0%
TTGAGAACATTTGACAGCAT+GGG + Chr3:82392853-82392872 None:intergenic 35.0%
TTGAGTCATGTTAGTGTCTT+TGG + Chr3:82394095-82394114 None:intergenic 35.0%
TTGCAATGAGTAGTACTAGT+TGG - Chr3:82397063-82397082 MsG0380016354.01.T02:five_prime_UTR 35.0%
! ACAGGTTGAAAGCTATTACT+CGG - Chr3:82396691-82396710 MsG0380016354.01.T02:five_prime_UTR 35.0%
! CACAGACTGCAACTTTTTAT+GGG - Chr3:82396644-82396663 MsG0380016354.01.T02:five_prime_UTR 35.0%
! TCACAGACTGCAACTTTTTA+TGG - Chr3:82396643-82396662 MsG0380016354.01.T02:five_prime_UTR 35.0%
! TGTTCTTAAGGCATTTGATC+AGG + Chr3:82395386-82395405 None:intergenic 35.0%
! TTCATCATTTTCACCTTGCT+AGG - Chr3:82393254-82393273 MsG0380016354.01.T02:intron 35.0%
!! GGGTTTGTTTTCTCTTTGAT+TGG - Chr3:82393646-82393665 MsG0380016354.01.T02:intron 35.0%
!! GTGTTGTTTGATTCTTGAGA+TGG - Chr3:82396334-82396353 MsG0380016354.01.T02:five_prime_UTR 35.0%
!! TGATAAGTTGATGATGTGAC+AGG + Chr3:82397182-82397201 None:intergenic 35.0%
!! TGCAAGAAAGTATCAATGAC+AGG + Chr3:82391533-82391552 None:intergenic 35.0%
!!! TTGCGTGCCATTTTCATAAT+TGG - Chr3:82394384-82394403 MsG0380016354.01.T02:intron 35.0%
!!! TTTTTTGGAACGAAAGAACG+TGG + Chr3:82395612-82395631 None:intergenic 35.0%
AAACCCCATTCTTAATGGGA+AGG + Chr3:82394641-82394660 None:intergenic 40.0%
AACAACTCGTCTTTAGATGG+AGG + Chr3:82394528-82394547 None:intergenic 40.0%
AACCGAAACACATCATCGAT+AGG - Chr3:82397723-82397742 MsG0380016354.01.T02:five_prime_UTR 40.0%
AAGTGGAAACATTGTGTGTC+AGG - Chr3:82396563-82396582 MsG0380016354.01.T02:five_prime_UTR 40.0%
AATGAGTAGTACCTTAGCAG+GGG + Chr3:82391889-82391908 None:intergenic 40.0%
ACTACTACATGGTCTATGTG+AGG - Chr3:82396517-82396536 MsG0380016354.01.T02:five_prime_UTR 40.0%
AGAAGTAGTAGAAGAAGAGG+AGG + Chr3:82395816-82395835 None:intergenic 40.0%
AGAGGCTCAGCTTCATAAAT+TGG + Chr3:82393224-82393243 None:intergenic 40.0%
AGGAGGAGTAAGAAAAAGCA+AGG - Chr3:82395217-82395236 MsG0380016354.01.T02:intron 40.0%
AGGGACAAATGTGTAACCAA+TGG + Chr3:82393939-82393958 None:intergenic 40.0%
AGGGTCTTTCTTCAAATCCA+CGG + Chr3:82391733-82391752 None:intergenic 40.0%
AGGTGTGAAGTGATATGATG+TGG - Chr3:82395549-82395568 MsG0380016354.01.T02:intron 40.0%
AGTGTCAAAGATTAAGGCCT+AGG - Chr3:82391766-82391785 MsG0380016354.01.T02:intron 40.0%
ATAGTACAATAGACGAGACG+TGG - Chr3:82391495-82391514 MsG0380016354.01.T02:intron 40.0%
ATGCCAGCTATAACACATAC+AGG - Chr3:82396673-82396692 MsG0380016354.01.T02:five_prime_UTR 40.0%
ATGGGCGGATCTAATATGTA+TGG + Chr3:82392835-82392854 None:intergenic 40.0%
CAACCTGTATGTGTTATAGC+TGG + Chr3:82396679-82396698 None:intergenic 40.0%
CATCCTTCCCATTAAGAATG+GGG - Chr3:82394635-82394654 MsG0380016354.01.T02:intron 40.0%
CCATCTAAAGACGAGTTGTT+CGG - Chr3:82394528-82394547 MsG0380016354.01.T02:intron 40.0%
CCTCTTCTTCTACTACTTCT+CGG - Chr3:82395816-82395835 MsG0380016354.01.T02:CDS 40.0%
CTCAAGGTGTATACACCTAT+TGG - Chr3:82397241-82397260 MsG0380016354.01.T02:intron 40.0%
CTCACCTGAAATAGTAGGAA+AGG - Chr3:82396231-82396250 MsG0380016354.01.T02:five_prime_UTR 40.0%
CTCACCTTTCCTACTATTTC+AGG + Chr3:82396238-82396257 None:intergenic 40.0%
GACTCAAACTCAGAATCTCT+AGG - Chr3:82394108-82394127 MsG0380016354.01.T02:intron 40.0%
GAGAAGAGGAAAGATGATAG+AGG - Chr3:82396470-82396489 MsG0380016354.01.T02:five_prime_UTR 40.0%
GAGGAGTAAGAAAAAGCAAG+GGG - Chr3:82395219-82395238 MsG0380016354.01.T02:intron 40.0%
GAGGGAGGAAGAAGTAAAAA+AGG + Chr3:82395667-82395686 None:intergenic 40.0%
GATGATTTAGATGCAAGAGC+CGG - Chr3:82397370-82397389 MsG0380016354.01.T02:five_prime_UTR 40.0%
GCATCCTTCCCATTAAGAAT+GGG - Chr3:82394634-82394653 MsG0380016354.01.T02:intron 40.0%
GCCGGAGAATGATATATCTA+AGG - Chr3:82397388-82397407 MsG0380016354.01.T02:five_prime_UTR 40.0%
GCTTAGGTTTCATTCTCAGA+GGG - Chr3:82397288-82397307 MsG0380016354.01.T02:five_prime_UTR 40.0%
GGAAGAGAGAAAATCAGTGT+TGG + Chr3:82397161-82397180 None:intergenic 40.0%
GGAGGAGTAAGAAAAAGCAA+GGG - Chr3:82395218-82395237 MsG0380016354.01.T02:intron 40.0%
GGTTTGATGAGGATAGGTTA+AGG + Chr3:82397707-82397726 None:intergenic 40.0%
GTCACGATTGTTTCATTTGC+AGG - Chr3:82393131-82393150 MsG0380016354.01.T02:intron 40.0%
GTTGAAAGCTATTACTCGGT+CGG - Chr3:82396695-82396714 MsG0380016354.01.T02:five_prime_UTR 40.0%
TAGTACAATAGACGAGACGT+GGG - Chr3:82391496-82391515 MsG0380016354.01.T02:intron 40.0%
TGCTTAGGTTTCATTCTCAG+AGG - Chr3:82397287-82397306 MsG0380016354.01.T02:five_prime_UTR 40.0%
TGTCTCTAGTACTTATTCCG+TGG - Chr3:82391713-82391732 MsG0380016354.01.T02:intron 40.0%
TTATGAAAATGGCACGCAAG+AGG + Chr3:82394383-82394402 None:intergenic 40.0%
TTGCTTGTGTTTGTGTTGTG+TGG + Chr3:82391643-82391662 None:intergenic 40.0%
TTTAACTAATCGGTTGGGTC+GGG + Chr3:82396814-82396833 None:intergenic 40.0%
TTTCTTACTCCTCCTAGAAG+TGG + Chr3:82395212-82395231 None:intergenic 40.0%
TTTGCAACCAACAAAGAGAG+TGG + Chr3:82395876-82395895 None:intergenic 40.0%
! CAGCAATTTTGAACCGAAAC+CGG + Chr3:82395980-82395999 None:intergenic 40.0%
! CTCAGTCCTAAATTTTGCCT+TGG - Chr3:82396879-82396898 MsG0380016354.01.T02:five_prime_UTR 40.0%
! GAGAGAAAATCAGTGTTGGA+TGG + Chr3:82397157-82397176 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG + Chr3:82393347-82393366 None:intergenic 40.0%
! GCAAGAGGCTTTTCCTTTAA+CGG + Chr3:82394368-82394387 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG + Chr3:82393350-82393369 None:intergenic 40.0%
! GTTAGAGTTGCAAATGGACT+TGG + Chr3:82392715-82392734 None:intergenic 40.0%
! GTTGGAAGATTGGCTCAATT+GGG - Chr3:82393626-82393645 MsG0380016354.01.T02:intron 40.0%
! TCAGAGGTCTATTGATTGTC+TGG - Chr3:82394988-82395007 MsG0380016354.01.T02:intron 40.0%
! TGATGTGTTTCGGTTTGATG+AGG + Chr3:82397718-82397737 None:intergenic 40.0%
! TGGATCCTTGACTAAGGTTT+TGG - Chr3:82392581-82392600 MsG0380016354.01.T02:intron 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG - Chr3:82393625-82393644 MsG0380016354.01.T02:intron 40.0%
! TGTTTCGGTTTGATGAGGAT+AGG + Chr3:82397713-82397732 None:intergenic 40.0%
! TTAAATGATAGGGGTGTGTG+AGG - Chr3:82395079-82395098 MsG0380016354.01.T02:intron 40.0%
! TTTGGAACTTCTGGAGGATT+TGG - Chr3:82392065-82392084 MsG0380016354.01.T02:intron 40.0%
!! CAGTAAAAAAGCACCTTGAG+TGG - Chr3:82397319-82397338 MsG0380016354.01.T02:five_prime_UTR 40.0%
!! GATGGTATCTTTGGAACTTC+TGG - Chr3:82392056-82392075 MsG0380016354.01.T02:intron 40.0%
!! GTACTGTGTTTTTACAGCTG+CGG - Chr3:82397666-82397685 MsG0380016354.01.T02:five_prime_UTR 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG - Chr3:82393772-82393791 MsG0380016354.01.T02:intron 40.0%
AAAACCGAAGACATGACGGT+CGG + Chr3:82396043-82396062 None:intergenic 45.0%
AAAGCTATTACTCGGTCGGT+TGG - Chr3:82396699-82396718 MsG0380016354.01.T02:five_prime_UTR 45.0%
AAAGTTGCAGTCTGTGAGCT+AGG + Chr3:82396640-82396659 None:intergenic 45.0%
AAGACATGACGGTCGGAAAA+GGG + Chr3:82396036-82396055 None:intergenic 45.0%
AAGCTATTACTCGGTCGGTT+GGG - Chr3:82396700-82396719 MsG0380016354.01.T02:five_prime_UTR 45.0%
AAGTTGCAGTCTGTGAGCTA+GGG + Chr3:82396639-82396658 None:intergenic 45.0%
AATAAGGTGTGTGGATGTGG+TGG + Chr3:82391560-82391579 None:intergenic 45.0%
AATGAACCTGTCAAAAGGGG+TGG - Chr3:82392561-82392580 MsG0380016354.01.T02:intron 45.0%
AGAACATTTGACAGCATGGG+CGG + Chr3:82392850-82392869 None:intergenic 45.0%
AGAAGAAGAGGAGGATGACA+AGG + Chr3:82395807-82395826 None:intergenic 45.0%
AGGTTCACCACTCTCTTTGT+TGG - Chr3:82395866-82395885 MsG0380016354.01.T02:five_prime_UTR 45.0%
CAGTTAAGAACGTTCGGTTG+CGG + Chr3:82396751-82396770 None:intergenic 45.0%
CCAAAGCCAAAGGTTGAAGA+TGG - Chr3:82392038-82392057 MsG0380016354.01.T02:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG + Chr3:82392589-82392608 None:intergenic 45.0%
CCGAACAACTCGTCTTTAGA+TGG + Chr3:82394531-82394550 None:intergenic 45.0%
CCGAGAAGTAGTAGAAGAAG+AGG + Chr3:82395819-82395838 None:intergenic 45.0%
CGACAAAACCGAAGACATGA+CGG + Chr3:82396047-82396066 None:intergenic 45.0%
CTCAGCTCAACATTGAGACT+GGG - Chr3:82393698-82393717 MsG0380016354.01.T02:intron 45.0%
GAAGAAGAGGAGGATGACAA+GGG + Chr3:82395806-82395825 None:intergenic 45.0%
GCTTGAAAATTCTGGGTGCT+TGG - Chr3:82394786-82394805 MsG0380016354.01.T02:intron 45.0%
GGAATAACTCCTCCAGTGTT+AGG + Chr3:82393326-82393345 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG - Chr3:82393335-82393354 MsG0380016354.01.T02:CDS 45.0%
GGCATCCTTCCCATTAAGAA+TGG - Chr3:82394633-82394652 MsG0380016354.01.T02:intron 45.0%
GGGTCTAGATTTAATGGTCG+CGG + Chr3:82396016-82396035 None:intergenic 45.0%
GGTCTAGATTTAATGGTCGC+GGG + Chr3:82396015-82396034 None:intergenic 45.0%
TAGATCAGCTCTTGGTCTCA+GGG - Chr3:82393361-82393380 MsG0380016354.01.T02:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG - Chr3:82393699-82393718 MsG0380016354.01.T02:intron 45.0%
TTACTATAGAGAAGGGAGGG+AGG + Chr3:82395682-82395701 None:intergenic 45.0%
TTAGATCAGCTCTTGGTCTC+AGG - Chr3:82393360-82393379 MsG0380016354.01.T02:CDS 45.0%
TTCTCGGACTCGTAGTCAAA+GGG - Chr3:82395832-82395851 MsG0380016354.01.T02:CDS 45.0%
! ATGACGGTTTAGACGGGTTT+CGG - Chr3:82396838-82396857 MsG0380016354.01.T02:five_prime_UTR 45.0%
! CAATAGACCTCTGAGAAGTG+TGG + Chr3:82394982-82395001 None:intergenic 45.0%
! CCATCTTCAACCTTTGGCTT+TGG + Chr3:82392041-82392060 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG - Chr3:82393165-82393184 MsG0380016354.01.T02:intron 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG - Chr3:82392113-82392132 MsG0380016354.01.T02:intron 45.0%
! TTTGGAACGAAAGAACGTGG+TGG + Chr3:82395609-82395628 None:intergenic 45.0%
! TTTTCCGACCGTCATGTCTT+CGG - Chr3:82396036-82396055 MsG0380016354.01.T02:five_prime_UTR 45.0%
!! ATGTCTTCGGTTTTGTCGGA+TGG - Chr3:82396049-82396068 MsG0380016354.01.T02:five_prime_UTR 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG - Chr3:82392586-82392605 MsG0380016354.01.T02:intron 45.0%
!! CGTCATGTCTTCGGTTTTGT+CGG - Chr3:82396045-82396064 MsG0380016354.01.T02:five_prime_UTR 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG - Chr3:82392059-82392078 MsG0380016354.01.T02:intron 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG + Chr3:82393793-82393812 None:intergenic 45.0%
!! GTTGATGATGAGCCTAACAC+TGG - Chr3:82393311-82393330 MsG0380016354.01.T02:CDS 45.0%
!! TTGTTTCGGGTGGGTTATGT+CGG - Chr3:82396092-82396111 MsG0380016354.01.T02:five_prime_UTR 45.0%
!! AAATATTATCTTTAATAATA+AGG + Chr3:82391576-82391595 None:intergenic 5.0%
!!! TTTTATTTTCAAAATTATTA+AGG - Chr3:82393523-82393542 MsG0380016354.01.T02:intron 5.0%
AAAGACCAAAGCCCCTGCTA+AGG - Chr3:82391875-82391894 MsG0380016354.01.T02:intron 50.0%
AAGGGGTGGATCCTTGACTA+AGG - Chr3:82392575-82392594 MsG0380016354.01.T02:intron 50.0%
ACTGGAGGAGTTATTCCTCC+AGG - Chr3:82393329-82393348 MsG0380016354.01.T02:CDS 50.0%
AGAGAGTGGTGAACCTGTAG+CGG + Chr3:82395862-82395881 None:intergenic 50.0%
AGTTGCAGTCTGTGAGCTAG+GGG + Chr3:82396638-82396657 None:intergenic 50.0%
CTTCTCGGACTCGTAGTCAA+AGG - Chr3:82395831-82395850 MsG0380016354.01.T02:CDS 50.0%
GAAGACATGACGGTCGGAAA+AGG + Chr3:82396037-82396056 None:intergenic 50.0%
GATGATGAGCCTAACACTGG+AGG - Chr3:82393314-82393333 MsG0380016354.01.T02:CDS 50.0%
GCTCAGCTCAACATTGAGAC+TGG - Chr3:82393697-82393716 MsG0380016354.01.T02:intron 50.0%
GGGTCCTTCACTGCCTTATA+TGG - Chr3:82396113-82396132 MsG0380016354.01.T02:five_prime_UTR 50.0%
TAATGGTCGCGGGTTTGTGT+CGG + Chr3:82396005-82396024 None:intergenic 50.0%
TAGTACCTTAGCAGGGGCTT+TGG + Chr3:82391883-82391902 None:intergenic 50.0%
TCAAGTCGTCGTACAGTCCT+GGG - Chr3:82395583-82395602 MsG0380016354.01.T02:intron 50.0%
TCATCGACCACACTTCTCAG+AGG - Chr3:82394972-82394991 MsG0380016354.01.T02:intron 50.0%
TCCTCCTAGAAGTGGACAAG+CGG + Chr3:82395204-82395223 None:intergenic 50.0%
TTAGGACTGAGCAGCAGAAC+CGG + Chr3:82396870-82396889 None:intergenic 50.0%
TTCACCTTGCTAGGAGCCAT+TGG - Chr3:82393263-82393282 MsG0380016354.01.T02:intron 50.0%
! AAGGATCCACCCCTTTTGAC+AGG + Chr3:82392570-82392589 None:intergenic 50.0%
! AATGATAGGGGTGTGTGAGG+TGG - Chr3:82395082-82395101 MsG0380016354.01.T02:intron 50.0%
! ATTTTGCTAGGGGTGAGCAG+CGG - Chr3:82395945-82395964 MsG0380016354.01.T02:five_prime_UTR 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG - Chr3:82393778-82393797 MsG0380016354.01.T02:intron 50.0%
! TGACGGTTTAGACGGGTTTC+GGG - Chr3:82396839-82396858 MsG0380016354.01.T02:five_prime_UTR 50.0%
! TTTTACAGCTGCGGTTCGTG+CGG - Chr3:82397675-82397694 MsG0380016354.01.T02:five_prime_UTR 50.0%
!! TCTTCGGTTTTGTCGGATGG+CGG - Chr3:82396052-82396071 MsG0380016354.01.T02:five_prime_UTR 50.0%
!! TGTTTCGGGTGGGTTATGTC+GGG - Chr3:82396093-82396112 MsG0380016354.01.T02:five_prime_UTR 50.0%
ACGGTCACCTAGAGCTCCAA+TGG + Chr3:82393282-82393301 None:intergenic 55.0%
ACTAATCGGTTGGGTCGGGT+CGG + Chr3:82396810-82396829 None:intergenic 55.0%
AGCTCCAATGGCTCCTAGCA+AGG + Chr3:82393270-82393289 None:intergenic 55.0%
CTAGGAGCCATTGGAGCTCT+AGG - Chr3:82393272-82393291 MsG0380016354.01.T02:intron 55.0%
GTCAAAGGGATGTCCGCTAC+AGG - Chr3:82395846-82395865 MsG0380016354.01.T02:intron 55.0%
GTCAAGTCGTCGTACAGTCC+TGG - Chr3:82395582-82395601 MsG0380016354.01.T02:intron 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG - Chr3:82393365-82393384 MsG0380016354.01.T02:CDS 55.0%
! GGTTGCGGTTTGTTTCGGGT+GGG - Chr3:82396083-82396102 MsG0380016354.01.T02:five_prime_UTR 55.0%
!! AGCGGGTTGCGGTTTGTTTC+GGG - Chr3:82396079-82396098 MsG0380016354.01.T02:five_prime_UTR 55.0%
!! ATTGGAGCTCTAGGTGACCG+TGG - Chr3:82393281-82393300 MsG0380016354.01.T02:intron 55.0%
!! GAGCGGGTTGCGGTTTGTTT+CGG - Chr3:82396078-82396097 MsG0380016354.01.T02:five_prime_UTR 55.0%
ACGAAAGAACGTGGTGGCCC+AGG + Chr3:82395603-82395622 None:intergenic 60.0%
CCTAGAAGTGGACAAGCGGC+AGG + Chr3:82395200-82395219 None:intergenic 60.0%
GCCGCTTGTCCACTTCTAGG+AGG - Chr3:82395200-82395219 MsG0380016354.01.T02:intron 60.0%
GCTCTTGGTCTCAGGGAAGG+AGG - Chr3:82393368-82393387 MsG0380016354.01.T02:CDS 60.0%
GTGGACAAGCGGCAGGATTG+AGG + Chr3:82395193-82395212 None:intergenic 60.0%
! CCTGCCGCTTGTCCACTTCT+AGG - Chr3:82395197-82395216 MsG0380016354.01.T02:intron 60.0%
! CGGTTTAGACGGGTTTCGGG+CGG - Chr3:82396842-82396861 MsG0380016354.01.T02:five_prime_UTR 60.0%
! GGGTTGCGGTTTGTTTCGGG+TGG - Chr3:82396082-82396101 MsG0380016354.01.T02:five_prime_UTR 60.0%
! TTGTCGGATGGCGGCTTGAG+CGG - Chr3:82396061-82396080 MsG0380016354.01.T02:five_prime_UTR 60.0%
GGTTGGGTCGGGTCGGATGT+CGG + Chr3:82396803-82396822 None:intergenic 65.0%
GTTGGGTCGGGTCGGATGTC+GGG + Chr3:82396802-82396821 None:intergenic 65.0%
TGCTAGGGGTGAGCAGCGGT+CGG - Chr3:82395949-82395968 MsG0380016354.01.T02:five_prime_UTR 65.0%
! AGACGGGTTTCGGGCGGTTC+CGG - Chr3:82396848-82396867 MsG0380016354.01.T02:five_prime_UTR 65.0%
! TGTCGGATGGCGGCTTGAGC+GGG - Chr3:82396062-82396081 MsG0380016354.01.T02:five_prime_UTR 65.0%
!! ATGGCGGCTTGAGCGGGTTG+CGG - Chr3:82396068-82396087 MsG0380016354.01.T02:five_prime_UTR 65.0%
GCTAGGGGTGAGCAGCGGTC+GGG - Chr3:82395950-82395969 MsG0380016354.01.T02:five_prime_UTR 70.0%
TGAGCAGCGGTCGGGTACGC+CGG - Chr3:82395958-82395977 MsG0380016354.01.T02:five_prime_UTR 70.0%
!! GCGGTCGGGTACGCCGGTTT+CGG - Chr3:82395964-82395983 MsG0380016354.01.T02:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82391433 82397744 82391433 ID=MsG0380016354.01;Name=MsG0380016354.01
Chr3 mRNA 82391433 82397744 82391433 ID=MsG0380016354.01.T01;Parent=MsG0380016354.01;Name=MsG0380016354.01.T01;_AED=0.38;_eAED=0.46;_QI=743|0.5|0.6|1|0.25|0.2|5|0|87
Chr3 exon 82395788 82396024 82395788 ID=MsG0380016354.01.T01:exon:13866;Parent=MsG0380016354.01.T01
Chr3 exon 82397035 82397151 82397035 ID=MsG0380016354.01.T01:exon:13865;Parent=MsG0380016354.01.T01
Chr3 five_prime_UTR 82397281 82397744 82397281 ID=MsG0380016354.01.T01:five_prime_utr;Parent=MsG0380016354.01.T01
Chr3 five_prime_UTR 82397035 82397151 82397035 ID=MsG0380016354.01.T01:five_prime_utr;Parent=MsG0380016354.01.T01
Chr3 five_prime_UTR 82395863 82396024 82395863 ID=MsG0380016354.01.T01:five_prime_utr;Parent=MsG0380016354.01.T01
Chr3 CDS 82395788 82395862 82395788 ID=MsG0380016354.01.T01:cds;Parent=MsG0380016354.01.T01
Chr3 CDS 82393310 82393436 82393310 ID=MsG0380016354.01.T01:cds;Parent=MsG0380016354.01.T01
Chr3 CDS 82391433 82391494 82391433 ID=MsG0380016354.01.T01:cds;Parent=MsG0380016354.01.T01
Chr3 mRNA 82391433 82397744 82391433 ID=MsG0380016354.01.T02;Parent=MsG0380016354.01;Name=MsG0380016354.01.T02;_AED=0.20;_eAED=0.25;_QI=1753|0.33|0.5|1|0.33|0.25|4|0|87
Chr3 five_prime_UTR 82397281 82397744 82397281 ID=MsG0380016354.01.T02:five_prime_utr;Parent=MsG0380016354.01.T02
Chr3 five_prime_UTR 82395863 82397151 82395863 ID=MsG0380016354.01.T02:five_prime_utr;Parent=MsG0380016354.01.T02
Chr3 CDS 82395788 82395862 82395788 ID=MsG0380016354.01.T02:cds;Parent=MsG0380016354.01.T02
Chr3 CDS 82393310 82393436 82393310 ID=MsG0380016354.01.T02:cds;Parent=MsG0380016354.01.T02
Chr3 CDS 82391433 82391494 82391433 ID=MsG0380016354.01.T02:cds;Parent=MsG0380016354.01.T02
Chr3 mRNA 82395114 82397744 82395114 ID=MsG0380016354.01.T03;Parent=MsG0380016354.01;Name=MsG0380016354.01.T03;_AED=0.13;_eAED=0.13;_QI=251|1|1|1|0.5|0.33|3|1699|117
Chr3 exon 82395114 82395589 82395114 ID=MsG0380016354.01.T03:exon:13870;Parent=MsG0380016354.01.T03
Chr3 five_prime_UTR 82397494 82397744 82397494 ID=MsG0380016354.01.T03:five_prime_utr;Parent=MsG0380016354.01.T03
Chr3 CDS 82397281 82397493 82397281 ID=MsG0380016354.01.T03:cds;Parent=MsG0380016354.01.T03
Chr3 CDS 82397011 82397151 82397011 ID=MsG0380016354.01.T03:cds;Parent=MsG0380016354.01.T03
Chr3 three_prime_UTR 82395788 82397010 82395788 ID=MsG0380016354.01.T03:three_prime_utr;Parent=MsG0380016354.01.T03
Chr3 three_prime_UTR 82395114 82395589 82395114 ID=MsG0380016354.01.T03:three_prime_utr;Parent=MsG0380016354.01.T03
Chr3 mRNA 82395261 82397744 82395261 ID=MsG0380016354.01.T04;Parent=MsG0380016354.01;Name=MsG0380016354.01.T04;_AED=0.12;_eAED=0.12;_QI=251|1|1|1|1|1|2|1750|117
Chr3 exon 82395261 82397151 82395261 ID=MsG0380016354.01.T04:exon:13871;Parent=MsG0380016354.01.T04
Chr3 five_prime_UTR 82397494 82397744 82397494 ID=MsG0380016354.01.T04:five_prime_utr;Parent=MsG0380016354.01.T04
Chr3 CDS 82397281 82397493 82397281 ID=MsG0380016354.01.T04:cds;Parent=MsG0380016354.01.T04
Chr3 CDS 82397011 82397151 82397011 ID=MsG0380016354.01.T04:cds;Parent=MsG0380016354.01.T04
Chr3 three_prime_UTR 82395261 82397010 82395261 ID=MsG0380016354.01.T04:three_prime_utr;Parent=MsG0380016354.01.T04
Gene Sequence

>MsG0380016354.01.T03

ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTGGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCGTTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTTAAAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGTGAGTAAATCTTTACCTCACTGA

>MsG0380016354.01.T04

ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTGGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCGTTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTTAAAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGTGAGTAAATCTTTACCTCACTGA

>MsG0380016354.01.T01

ATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGTTCTCTTCAATCACAAAAAATGGACAATTCAGTGTTCACAATCACAACGTTGATCATCTTCACCCTTGTCATCCTCCTCTTCTTCTACTACTTCTCGGACTCGTAGTCAAAGGGATGTCCGCTACAGCTGCGGTTCGTGCGGATATGACCTTAACCTATCCTCATCAAACCGAAACACATCATCGATAG

>MsG0380016354.01.T02

ATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGTTCTCTTCAATCACAAAAAATGGACAATTCAGTGTTCACAATCACAACGTTGATCATCTTCACCCTTGTCATCCTCCTCTTCTTCTACTACTTCTCGGACTCGTAGTCAAAGGGATGTCCGCTACAGCTGCGGTTCGTGCGGATATGACCTTAACCTATCCTCATCAAACCGAAACACATCATCGATAG

Protein sequence

>MsG0380016354.01.T03

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAVSKSLPH*

>MsG0380016354.01.T04

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAVSKSLPH*

>MsG0380016354.01.T01

MMSLTLEELFLQEKDLDQLLVSGKEFSSITKNGQFSVHNHNVDHLHPCHPPLLLLLLGLVVKGMSATAAVRADMTLTYPHQTETHHR*

>MsG0380016354.01.T02

MMSLTLEELFLQEKDLDQLLVSGKEFSSITKNGQFSVHNHNVDHLHPCHPPLLLLLLGLVVKGMSATAAVRADMTLTYPHQTETHHR*