AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003985.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003985.01.T01 MTR_1g072260 91.529 425 10 1 1 425 3 401 0.0 786
MsG0180003985.01.T01 MTR_7g111860 33.081 396 222 8 34 416 6 371 1.29e-57 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003985.01.T01 AT3G63140 76.280 371 62 1 53 423 60 404 0.0 582
MsG0180003985.01.T01 AT1G09340 34.400 375 206 10 49 416 30 371 1.15e-56 191
MsG0180003985.01.T01 AT1G09340 34.688 369 201 10 55 416 37 372 6.87e-56 189

Find 103 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1:+71379965 None:intergenic
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1:-71379546 MsG0180003985.01.T01:CDS
AGCCTTCCCTTTCCGTAATA+TGG 0.248769 1:-71379936 MsG0180003985.01.T01:intron
TACTTTGCAAAAGAGCTTCT+TGG 0.252518 1:-71381335 MsG0180003985.01.T01:CDS
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1:-71381010 MsG0180003985.01.T01:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1:-71380410 MsG0180003985.01.T01:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1:-71380046 MsG0180003985.01.T01:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1:+71381248 None:intergenic
TTCAATTTGCAGGGATTGTT+CGG 0.306642 1:-71380204 MsG0180003985.01.T01:intron
ACTCCATCCCAATTTACTTT+TGG 0.315805 1:+71379538 None:intergenic
TCATAATGCACAATGTTAAC+AGG 0.325320 1:+71379989 None:intergenic
CATTATGATCCAAAAGCTAT+TGG 0.327599 1:-71379974 MsG0180003985.01.T01:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1:-71380665 MsG0180003985.01.T01:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1:-71381068 MsG0180003985.01.T01:CDS
TAAATGAGGTGTATTAATAA+AGG 0.356934 1:-71379318 MsG0180003985.01.T01:three_prime_UTR
TTCTTGTTCATTAGTAGTGC+TGG 0.371195 1:-71380618 MsG0180003985.01.T01:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1:+71379443 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.376564 1:-71380181 MsG0180003985.01.T01:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1:-71379479 MsG0180003985.01.T01:CDS
CACAGCATGTCCACCACTAT+TGG 0.391544 1:+71381367 None:intergenic
TCAATTTGCAGGGATTGTTC+GGG 0.398088 1:-71380203 MsG0180003985.01.T01:intron
GCTAGATGATAAGATATTAG+AGG 0.403011 1:-71379429 MsG0180003985.01.T01:CDS
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1:-71380175 MsG0180003985.01.T01:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1:-71380393 MsG0180003985.01.T01:CDS
ATGCTATGATTTGCAGCATC+CGG 0.409637 1:+71380085 None:intergenic
ATCTCATTCTCACACTGATT+CGG 0.411024 1:-71381217 MsG0180003985.01.T01:CDS
AGATTGATAGAGAGGAGGAT+TGG 0.413296 1:+71381501 None:intergenic
GCAAAAGAGCTTCTTGGTGC+TGG 0.417862 1:-71381329 MsG0180003985.01.T01:CDS
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1:+71381472 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1:+71381493 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1:+71380641 None:intergenic
CCACAGTATATGATAGGGTC+TGG 0.453744 1:-71380387 MsG0180003985.01.T01:CDS
ATGTGAAAGTGGGAGAAGAT+TGG 0.454331 1:+71381559 None:intergenic
AGACGTTTAGAAGTTAAAGA+AGG 0.456010 1:+71381458 None:intergenic
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1:-71380664 MsG0180003985.01.T01:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1:-71381067 MsG0180003985.01.T01:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1:+71379406 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1:-71379545 MsG0180003985.01.T01:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1:-71381036 MsG0180003985.01.T01:CDS
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1:+71381478 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1:-71379478 MsG0180003985.01.T01:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1:+71381295 None:intergenic
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1:-71381084 MsG0180003985.01.T01:CDS
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1:-71381031 MsG0180003985.01.T01:CDS
TATTAGTAAATACCATATTA+CGG 0.487969 1:+71379924 None:intergenic
TGGATATGAATGGATTAGAC+AGG 0.488013 1:+71379389 None:intergenic
CTTGTTACATGATTTAAATG+AGG 0.488668 1:-71379332 MsG0180003985.01.T01:three_prime_UTR
TGCTATGATTTGCAGCATCC+GGG 0.492238 1:+71380086 None:intergenic
TTTACATACCCCTTCAACAT+GGG 0.493986 1:+71380569 None:intergenic
TAAATACCATATTACGGAAA+GGG 0.495025 1:+71379930 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1:+71379511 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1:-71380579 MsG0180003985.01.T01:CDS
CTAATCATAAATACCAATAG+TGG 0.505445 1:-71381380 MsG0180003985.01.T01:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1:-71380651 MsG0180003985.01.T01:CDS
AAACTATGTGCTCAAGCTGC+AGG 0.509740 1:-71380016 MsG0180003985.01.T01:CDS
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1:-71381048 MsG0180003985.01.T01:CDS
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1:-71381032 MsG0180003985.01.T01:CDS
AAGTGGGAGAAGATTGGAAG+AGG 0.519156 1:+71381565 None:intergenic
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1:-71380104 MsG0180003985.01.T01:CDS
TGAATGGATTAGACAGGCAC+TGG 0.522079 1:+71379395 None:intergenic
AGTGGTGGACATGCTGTGAT+TGG 0.532273 1:-71381362 MsG0180003985.01.T01:CDS
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1:-71381033 MsG0180003985.01.T01:CDS
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1:+71381496 None:intergenic
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1:-71379495 MsG0180003985.01.T01:CDS
AAAGTAGAAGAATGTGAAAG+TGG 0.543210 1:+71381548 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.543714 1:+71381595 None:intergenic
TCTGTCACCATTCTCACTGT+TGG 0.546638 1:-71381302 MsG0180003985.01.T01:CDS
ACAACACTCCCTACATCTGC+AGG 0.549124 1:+71381039 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1:-71380578 MsG0180003985.01.T01:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1:-71380468 MsG0180003985.01.T01:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1:+71381607 None:intergenic
GGAATGAAGAAGAGAAAGAA+AGG 0.551829 1:+71381522 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1:-71381047 MsG0180003985.01.T01:CDS
GTTGCAGAGAAGAGCAAGGT+AGG 0.560127 1:+71381587 None:intergenic
GACGTTTAGAAGTTAAAGAA+GGG 0.565697 1:+71381459 None:intergenic
ATCATAAATACCAATAGTGG+TGG 0.568756 1:-71381377 MsG0180003985.01.T01:CDS
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1:-71381081 MsG0180003985.01.T01:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1:-71380986 MsG0180003985.01.T01:CDS
GTAAATACCATATTACGGAA+AGG 0.578361 1:+71379929 None:intergenic
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1:-71380459 MsG0180003985.01.T01:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1:-71381405 MsG0180003985.01.T01:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1:+71380163 None:intergenic
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1:+71381251 None:intergenic
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1:-71379541 MsG0180003985.01.T01:CDS
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1:-71381016 MsG0180003985.01.T01:CDS
TTACATACCCCTTCAACATG+GGG 0.600415 1:+71380570 None:intergenic
TACCATATTACGGAAAGGGA+AGG 0.607565 1:+71379934 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1:+71380657 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1:-71380392 MsG0180003985.01.T01:CDS
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1:+71380175 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1:+71380573 None:intergenic
ACAACAAAGATTGCGAGGAG+TGG 0.624292 1:-71380362 MsG0180003985.01.T01:CDS
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1:-71380577 MsG0180003985.01.T01:intron
CATAATGCACAATGTTAACA+GGG 0.646540 1:+71379990 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1:+71380044 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1:-71379502 MsG0180003985.01.T01:CDS
AGAGGTTGCAGAGAAGAGCA+AGG 0.651792 1:+71381583 None:intergenic
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1:-71380978 MsG0180003985.01.T01:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1:-71381066 MsG0180003985.01.T01:CDS
AAGTAGAAGAATGTGAAAGT+GGG 0.654024 1:+71381549 None:intergenic
TGGAAACAACAAAGATTGCG+AGG 0.654997 1:-71380367 MsG0180003985.01.T01:CDS
CAGTGAGAATGGTGACAGAG+TGG 0.686600 1:+71381306 None:intergenic
CCAGACCCTATCATATACTG+TGG 0.716866 1:+71380387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAGTAAATACCATATTA+CGG + Chr1:71380987-71381006 None:intergenic 15.0%
!!! AAAAGTTTTATATGGATTAA+AGG + Chr1:71380618-71380637 None:intergenic 15.0%
!!! CAAAGAAAAAAAGTTTTATA+TGG + Chr1:71380626-71380645 None:intergenic 15.0%
!!! TTAAAGGTTTAAAATAAACT+TGG + Chr1:71380602-71380621 None:intergenic 15.0%
!! GTTGAATTTGAAAAATATTC+AGG - Chr1:71379808-71379827 MsG0180003985.01.T01:intron 20.0%
!! TAAATGAGGTGTATTAATAA+AGG - Chr1:71381590-71381609 MsG0180003985.01.T01:CDS 20.0%
!!! AATGTATATTTTCAATTTGC+AGG - Chr1:71380694-71380713 MsG0180003985.01.T01:intron 20.0%
!!! ATGTATATTTTCAATTTGCA+GGG - Chr1:71380695-71380714 MsG0180003985.01.T01:intron 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + Chr1:71381532-71381551 None:intergenic 20.0%
! AATAACTGTTATCAGCAAAA+TGG + Chr1:71380390-71380409 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - Chr1:71380412-71380431 MsG0180003985.01.T01:CDS 25.0%
! CTAATCATAAATACCAATAG+TGG - Chr1:71379528-71379547 MsG0180003985.01.T01:CDS 25.0%
! CTTGTTACATGATTTAAATG+AGG - Chr1:71381576-71381595 MsG0180003985.01.T01:CDS 25.0%
! GAATCATCATTATTACATCA+AGG - Chr1:71379774-71379793 MsG0180003985.01.T01:intron 25.0%
! TAAATACCATATTACGGAAA+GGG + Chr1:71380981-71381000 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + Chr1:71380229-71380248 None:intergenic 25.0%
! TGTAATGTAGATTAGAACAT+AGG + Chr1:71381011-71381030 None:intergenic 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + Chr1:71379663-71379682 None:intergenic 25.0%
!! TGTGTGATCATTTTACATTT+TGG + Chr1:71381542-71381561 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - Chr1:71380228-71380247 MsG0180003985.01.T01:intron 25.0%
AAAGTAGAAGAATGTGAAAG+TGG + Chr1:71379363-71379382 None:intergenic 30.0%
AAGTAGAAGAATGTGAAAGT+GGG + Chr1:71379362-71379381 None:intergenic 30.0%
AGACGTTTAGAAGTTAAAGA+AGG + Chr1:71379453-71379472 None:intergenic 30.0%
ATCATAAATACCAATAGTGG+TGG - Chr1:71379531-71379550 MsG0180003985.01.T01:CDS 30.0%
CAAGACAATTGATACTCTAT+TGG + Chr1:71381060-71381079 None:intergenic 30.0%
CATAATGCACAATGTTAACA+GGG + Chr1:71380921-71380940 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - Chr1:71380934-71380953 MsG0180003985.01.T01:intron 30.0%
GACGTTTAGAAGTTAAAGAA+GGG + Chr1:71379452-71379471 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - Chr1:71381479-71381498 MsG0180003985.01.T01:CDS 30.0%
GTAAATACCATATTACGGAA+AGG + Chr1:71380982-71381001 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + Chr1:71380922-71380941 None:intergenic 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + Chr1:71381468-71381487 None:intergenic 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - Chr1:71380487-71380506 MsG0180003985.01.T01:intron 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - Chr1:71380486-71380505 MsG0180003985.01.T01:intron 30.0%
! TTGAGGAGTACATAAAGATT+GGG - Chr1:71381430-71381449 MsG0180003985.01.T01:CDS 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - Chr1:71381429-71381448 MsG0180003985.01.T01:CDS 30.0%
!! GGTTCTAGAAATGTTGTATT+AGG + Chr1:71380369-71380388 None:intergenic 30.0%
ACTGAGAATCTGTTAAAAGG+AGG + Chr1:71379660-71379679 None:intergenic 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - Chr1:71381363-71381382 MsG0180003985.01.T01:CDS 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + Chr1:71379389-71379408 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - Chr1:71381406-71381425 MsG0180003985.01.T01:CDS 35.0%
TACTATCCTGTTCTGTTTAC+CGG + Chr1:71381102-71381121 None:intergenic 35.0%
TACTTTGCAAAAGAGCTTCT+TGG - Chr1:71379573-71379592 MsG0180003985.01.T01:intron 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - Chr1:71381362-71381381 MsG0180003985.01.T01:CDS 35.0%
TTCAATTTGCAGGGATTGTT+CGG - Chr1:71380704-71380723 MsG0180003985.01.T01:intron 35.0%
TTCTTGTTCATTAGTAGTGC+TGG - Chr1:71380290-71380309 MsG0180003985.01.T01:intron 35.0%
TTTACATACCCCTTCAACAT+GGG + Chr1:71380342-71380361 None:intergenic 35.0%
! ACTCCATCCCAATTTACTTT+TGG + Chr1:71381373-71381392 None:intergenic 35.0%
! AGTGGTTCTTTGATAGTAAG+TGG - Chr1:71380564-71380583 MsG0180003985.01.T01:intron 35.0%
! ATCTCATTCTCACACTGATT+CGG - Chr1:71379691-71379710 MsG0180003985.01.T01:intron 35.0%
! GCATCAATTCCAATAGCTTT+TGG + Chr1:71380946-71380965 None:intergenic 35.0%
! GTGGTTCTTTGATAGTAAGT+GGG - Chr1:71380565-71380584 MsG0180003985.01.T01:intron 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + Chr1:71379439-71379458 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + Chr1:71380343-71380362 None:intergenic 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + Chr1:71381363-71381382 None:intergenic 35.0%
!! CTTAACCACAAGTATTGAAC+CGG - Chr1:71381080-71381099 MsG0180003985.01.T01:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + Chr1:71380203-71380222 None:intergenic 35.0%
!! TGGATATGAATGGATTAGAC+AGG + Chr1:71381522-71381541 None:intergenic 35.0%
AACCTGCTGAGTTAACATGA+AGG + Chr1:71380010-71380029 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - Chr1:71380418-71380437 MsG0180003985.01.T01:CDS 40.0%
AGACCTAAAAGAACGGTTTG+AGG - Chr1:71381413-71381432 MsG0180003985.01.T01:CDS 40.0%
AGATTGATAGAGAGGAGGAT+TGG + Chr1:71379410-71379429 None:intergenic 40.0%
ATCAGTTATGTCTCAACCCA+GGG - Chr1:71381227-71381246 MsG0180003985.01.T01:CDS 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + Chr1:71379352-71379371 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - Chr1:71379824-71379843 MsG0180003985.01.T01:intron 40.0%
ATTGAACCGGTAAACAGAAC+AGG - Chr1:71381093-71381112 MsG0180003985.01.T01:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - Chr1:71381367-71381386 MsG0180003985.01.T01:CDS 40.0%
CTGTTCTAATATATGCAGCC+AGG - Chr1:71380182-71380201 MsG0180003985.01.T01:CDS 40.0%
GTTAGTTGTCCGATATGTGT+CGG - Chr1:71380088-71380107 MsG0180003985.01.T01:CDS 40.0%
TACCATATTACGGAAAGGGA+AGG + Chr1:71380977-71380996 None:intergenic 40.0%
TATCGAACACCGACACATAT+CGG + Chr1:71380100-71380119 None:intergenic 40.0%
TCAATTTGCAGGGATTGTTC+GGG - Chr1:71380705-71380724 MsG0180003985.01.T01:intron 40.0%
TCAGGCCACAGTATATGATA+GGG - Chr1:71380516-71380535 MsG0180003985.01.T01:intron 40.0%
TGGAAACAACAAAGATTGCG+AGG - Chr1:71380541-71380560 MsG0180003985.01.T01:intron 40.0%
TTACATACCCCTTCAACATG+GGG + Chr1:71380341-71380360 None:intergenic 40.0%
TTCAGGCCACAGTATATGAT+AGG - Chr1:71380515-71380534 MsG0180003985.01.T01:intron 40.0%
TTCATCACCAACAGTGAGAA+TGG + Chr1:71379616-71379635 None:intergenic 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + Chr1:71381419-71381438 None:intergenic 40.0%
! ATGCTATGATTTGCAGCATC+CGG + Chr1:71380826-71380845 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + Chr1:71380867-71380886 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + Chr1:71381411-71381430 None:intergenic 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - Chr1:71380232-71380251 MsG0180003985.01.T01:intron 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + Chr1:71381407-71381426 None:intergenic 40.0%
!! GTTTACCGGTTCAATACTTG+TGG + Chr1:71381088-71381107 None:intergenic 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - Chr1:71379908-71379927 MsG0180003985.01.T01:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - Chr1:71379898-71379917 MsG0180003985.01.T01:intron 40.0%
AAACTATGTGCTCAAGCTGC+AGG - Chr1:71380892-71380911 MsG0180003985.01.T01:intron 45.0%
AAAGCAGATGCTGGTCATGT+TGG - Chr1:71380449-71380468 MsG0180003985.01.T01:CDS 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + Chr1:71379346-71379365 None:intergenic 45.0%
ACAACAAAGATTGCGAGGAG+TGG - Chr1:71380546-71380565 MsG0180003985.01.T01:intron 45.0%
AGAGGAGATTGATAGAGAGG+AGG + Chr1:71379415-71379434 None:intergenic 45.0%
AGCCTTCCCTTTCCGTAATA+TGG - Chr1:71380972-71380991 MsG0180003985.01.T01:intron 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + Chr1:71379433-71379452 None:intergenic 45.0%
ATGAACCTCCCCATGTTGAA+GGG - Chr1:71380330-71380349 MsG0180003985.01.T01:intron 45.0%
CAACAATGGCAAGGATCTTG+AGG - Chr1:71379922-71379941 MsG0180003985.01.T01:intron 45.0%
CATCAGTTATGTCTCAACCC+AGG - Chr1:71381226-71381245 MsG0180003985.01.T01:CDS 45.0%
CCACAGTATATGATAGGGTC+TGG - Chr1:71380521-71380540 MsG0180003985.01.T01:intron 45.0%
CCAGACCCTATCATATACTG+TGG + Chr1:71380524-71380543 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + Chr1:71379418-71379437 None:intergenic 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + Chr1:71381400-71381419 None:intergenic 45.0%
TCTAATACCGCCTTGCTGAA+CGG - Chr1:71381126-71381145 MsG0180003985.01.T01:intron 45.0%
TCTGTCACCATTCTCACTGT+TGG - Chr1:71379606-71379625 MsG0180003985.01.T01:intron 45.0%
TGCCTTCATGTTAACTCAGC+AGG - Chr1:71380005-71380024 MsG0180003985.01.T01:CDS 45.0%
TTGACAGTTGGGCAGTATTC+AGG - Chr1:71380498-71380517 MsG0180003985.01.T01:intron 45.0%
TTGTAGGCCGGTGATTGATT+GGG - Chr1:71380244-71380263 MsG0180003985.01.T01:intron 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - Chr1:71379503-71379522 MsG0180003985.01.T01:CDS 45.0%
! TGCTATGATTTGCAGCATCC+GGG + Chr1:71380825-71380844 None:intergenic 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - Chr1:71379876-71379895 MsG0180003985.01.T01:intron 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + Chr1:71381516-71381535 None:intergenic 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - Chr1:71379913-71379932 MsG0180003985.01.T01:intron 45.0%
ACAACACTCCCTACATCTGC+AGG + Chr1:71379872-71379891 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + Chr1:71379328-71379347 None:intergenic 50.0%
CACAGCATGTCCACCACTAT+TGG + Chr1:71379544-71379563 None:intergenic 50.0%
CAGTGAGAATGGTGACAGAG+TGG + Chr1:71379605-71379624 None:intergenic 50.0%
CCTGAACCAGGAATTAGCAC+AGG + Chr1:71380736-71380755 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - Chr1:71380733-71380752 MsG0180003985.01.T01:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + Chr1:71380254-71380273 None:intergenic 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - Chr1:71380243-71380262 MsG0180003985.01.T01:intron 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + Chr1:71379316-71379335 None:intergenic 50.0%
GACAGACCTGTGCTAATTCC+TGG - Chr1:71380727-71380746 MsG0180003985.01.T01:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - Chr1:71380862-71380881 MsG0180003985.01.T01:intron 50.0%
GACTCTAGCTGTTGAGAACC+CGG - Chr1:71380804-71380823 MsG0180003985.01.T01:intron 50.0%
GATCACAAAGCCGTTCAGCA+AGG + Chr1:71381139-71381158 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - Chr1:71380329-71380348 MsG0180003985.01.T01:intron 50.0%
GATGCTGTCAAAGCAGATGC+TGG - Chr1:71380440-71380459 MsG0180003985.01.T01:CDS 50.0%
GGGGAAATCCTGCAGATGTA+GGG - Chr1:71379861-71379880 MsG0180003985.01.T01:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + Chr1:71380748-71380767 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + Chr1:71379324-71379343 None:intergenic 50.0%
TGAACCTCCCCATGTTGAAG+GGG - Chr1:71380331-71380350 MsG0180003985.01.T01:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - Chr1:71379841-71379860 MsG0180003985.01.T01:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - Chr1:71379860-71379879 MsG0180003985.01.T01:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + Chr1:71380270-71380289 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - Chr1:71380257-71380276 MsG0180003985.01.T01:intron 50.0%
! GCAAAAGAGCTTCTTGGTGC+TGG - Chr1:71379579-71379598 MsG0180003985.01.T01:intron 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - Chr1:71379892-71379911 MsG0180003985.01.T01:intron 50.0%
!! AGTGGTGGACATGCTGTGAT+TGG - Chr1:71379546-71379565 MsG0180003985.01.T01:CDS 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - Chr1:71379827-71379846 MsG0180003985.01.T01:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + Chr1:71381505-71381524 None:intergenic 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - Chr1:71379875-71379894 MsG0180003985.01.T01:intron 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - Chr1:71379872-71379891 MsG0180003985.01.T01:intron 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - Chr1:71379877-71379896 MsG0180003985.01.T01:intron 50.0%
ACCCAGGGAACTCTGCATCA+TGG - Chr1:71381242-71381261 MsG0180003985.01.T01:CDS 55.0%
CACAAAGCCGTTCAGCAAGG+CGG + Chr1:71381136-71381155 None:intergenic 55.0%
CATACCCCTTCAACATGGGG+AGG + Chr1:71380338-71380357 None:intergenic 55.0%
CCCAGGGAACTCTGCATCAT+GGG - Chr1:71381243-71381262 MsG0180003985.01.T01:CDS 55.0%
CCCATGATGCAGAGTTCCCT+GGG + Chr1:71381246-71381265 None:intergenic 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - Chr1:71379930-71379949 MsG0180003985.01.T01:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - Chr1:71379842-71379861 MsG0180003985.01.T01:intron 55.0%
GTGCTGGAGGCAGTACAGTA+TGG - Chr1:71379840-71379859 MsG0180003985.01.T01:intron 55.0%
GCCCATGATGCAGAGTTCCC+TGG + Chr1:71381247-71381266 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 71379303 71381627 71379303 ID=MsG0180003985.01;Name=MsG0180003985.01
Chr1 mRNA 71379303 71381627 71379303 ID=MsG0180003985.01.T01;Parent=MsG0180003985.01;Name=MsG0180003985.01.T01;_AED=0.28;_eAED=0.32;_QI=0|0.8|0.66|1|0.8|0.66|6|100|425
Chr1 exon 71379303 71379585 71379303 ID=MsG0180003985.01.T01:exon:30815;Parent=MsG0180003985.01.T01
Chr1 exon 71379937 71380214 71379937 ID=MsG0180003985.01.T01:exon:30814;Parent=MsG0180003985.01.T01
Chr1 exon 71380352 71380490 71380352 ID=MsG0180003985.01.T01:exon:30813;Parent=MsG0180003985.01.T01
Chr1 exon 71380578 71380680 71380578 ID=MsG0180003985.01.T01:exon:30812;Parent=MsG0180003985.01.T01
Chr1 exon 71380979 71381134 71380979 ID=MsG0180003985.01.T01:exon:30811;Parent=MsG0180003985.01.T01
Chr1 exon 71381209 71381627 71381209 ID=MsG0180003985.01.T01:exon:30810;Parent=MsG0180003985.01.T01
Chr1 CDS 71381209 71381627 71381209 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 CDS 71380979 71381134 71380979 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 CDS 71380578 71380680 71380578 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 CDS 71380352 71380490 71380352 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 CDS 71379937 71380214 71379937 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 CDS 71379403 71379585 71379403 ID=MsG0180003985.01.T01:cds;Parent=MsG0180003985.01.T01
Chr1 three_prime_UTR 71379303 71379402 71379303 ID=MsG0180003985.01.T01:three_prime_utr;Parent=MsG0180003985.01.T01
Gene Sequence

>MsG0180003985.01.T01

ATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAACTTCTAAACGTCTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATCATAAATACCAATAGTGGTGGACATGCTGTGATTGGCTTCTACTTTGCAAAAGAGCTTCTTGGTGCTGGCCACTCTGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGTTAATGATCTTTATCTCATTCTCACACTGATTCGGAAAGAATTGTTTAACTTATTGTTGAATTTGAAAAATATTCAGGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATTAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGCGAGGAGTGGTTCTTTGATAGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTCCCTTTCCGTAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>MsG0180003985.01.T01

MLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLTSKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSVNDLYLILTLIRKELFNLLLNLKNIQEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*