AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015974.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015974.01.T01 MTR_3g080840 80.399 301 7 5 1 300 1 250 2.41e-168 468
MsG0380015974.01.T01 MTR_1g471050 32.549 255 123 4 43 297 32 237 3.75e-41 144
MsG0380015974.01.T01 MTR_7g095920 38.235 204 77 5 94 297 80 234 1.49e-39 139
MsG0380015974.01.T01 MTR_1g086840 29.577 284 127 10 22 296 16 235 5.56e-27 106
MsG0380015974.01.T01 MTR_1g086840 26.957 230 106 9 22 242 16 192 9.69e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015974.01.T01 AT1G64680 62.637 273 46 4 28 300 18 234 6.28e-113 327
MsG0380015974.01.T01 AT1G64680 64.655 232 37 3 28 259 18 204 1.28e-97 286
MsG0380015974.01.T01 AT1G03055 30.241 291 133 6 7 297 31 251 6.77e-38 135
MsG0380015974.01.T01 AT4G01995 37.107 159 72 4 139 297 78 208 2.52e-21 90.9
MsG0380015974.01.T01 AT4G01995 37.107 159 72 4 139 297 109 239 2.58e-21 91.7

Find 60 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTTGGTTGGATATT+TGG 0.135539 3:-77400444 MsG0380015974.01.T01:CDS
TCTACCTGCATTTCTTTATA+TGG 0.188356 3:+77398503 None:intergenic
TTTGCTCTTGAAGCATATTT+TGG 0.195411 3:+77400646 None:intergenic
GTTATAGAAGTGGAGATAAA+TGG 0.222746 3:-77398547 MsG0380015974.01.T01:CDS
GAAAGGTTGGTTGGATATTT+GGG 0.230670 3:-77400443 MsG0380015974.01.T01:CDS
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 3:-77400490 MsG0380015974.01.T01:CDS
ATGAGTTGTGATATGGTTTA+TGG 0.271373 3:-77397841 MsG0380015974.01.T01:CDS
ATACTTGGAATCATTGTTAA+TGG 0.282259 3:+77398011 None:intergenic
CAAAATGGCTGAAAGGAAAA+AGG 0.322693 3:-77398633 MsG0380015974.01.T01:intron
TTATAGAAGTGGAGATAAAT+GGG 0.344984 3:-77398546 MsG0380015974.01.T01:CDS
TCCTCCAGGTGCGCCTGCTC+AGG 0.352565 3:-77400317 MsG0380015974.01.T01:CDS
ATCAGCATAGCAAGGTTGTT+TGG 0.360336 3:+77397783 None:intergenic
TCTGGTGAACCTGCTCCTTT+AGG 0.365720 3:-77400583 MsG0380015974.01.T01:CDS
CCTTTCTTCCACTGGCTAGT+TGG 0.368715 3:-77399350 MsG0380015974.01.T01:CDS
CTTCAAATGAAGGCGGGGTT+TGG 0.384590 3:+77397818 None:intergenic
TGAAGACATGAGTTGTGATA+TGG 0.393524 3:-77397848 MsG0380015974.01.T01:CDS
ATTCATGTGTGAAAACAAAA+TGG 0.411598 3:-77398648 MsG0380015974.01.T01:CDS
AACTCTGCAGCCCATCTTGT+TGG 0.428775 3:+77399392 None:intergenic
AGCAAGGTTGTTTGGAGACT+GGG 0.442350 3:+77397791 None:intergenic
TAGCAAGGTTGTTTGGAGAC+TGG 0.446056 3:+77397790 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 3:+77400490 None:intergenic
TCCACCTGAGCAGGCGCACC+TGG 0.454996 3:+77400313 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 3:-77399358 MsG0380015974.01.T01:CDS
CTTCTTTCTATGCTTCCTCC+AGG 0.466971 3:-77400331 MsG0380015974.01.T01:CDS
CAACACATCCACTGTTCTCC+AGG 0.477413 3:+77398096 None:intergenic
GATATTGTTGAATTATCTAC+TGG 0.479870 3:-77400251 MsG0380015974.01.T01:intron
AATTATTTCCACCAACAAGA+TGG 0.484190 3:-77399403 MsG0380015974.01.T01:CDS
AAAAGAAGGAAAAGAAAGGT+TGG 0.484991 3:-77400456 MsG0380015974.01.T01:CDS
TCCAGGTGCGCCTGCTCAGG+TGG 0.485107 3:-77400314 MsG0380015974.01.T01:CDS
CATTTGCAGAGCCTGTAATA+GGG 0.488770 3:-77400489 MsG0380015974.01.T01:CDS
AAATATGCTTCAAGAGCAAA+TGG 0.497574 3:-77400643 MsG0380015974.01.T01:CDS
CCAACTAGCCAGTGGAAGAA+AGG 0.501151 3:+77399350 None:intergenic
GAAGGAAAAGAAAGGTTGGT+TGG 0.501209 3:-77400452 MsG0380015974.01.T01:CDS
GGTCGTCTTCAAATGAAGGC+GGG 0.508459 3:+77397812 None:intergenic
TCTATAATATCCACCTGAGC+AGG 0.524418 3:+77400304 None:intergenic
ATTATTTCCACCAACAAGAT+GGG 0.524598 3:-77399402 MsG0380015974.01.T01:CDS
TCTGCAGCCCATCTTGTTGG+TGG 0.532193 3:+77399395 None:intergenic
GAAAGACAAGAAGACATACT+TGG 0.545947 3:+77397996 None:intergenic
GTGTCCATATAAAGAAATGC+AGG 0.556167 3:-77398507 MsG0380015974.01.T01:intron
ACTGGGTCGTCTTCAAATGA+AGG 0.561598 3:+77397808 None:intergenic
CTGGCTAGTTGGTCCTTCTG+AGG 0.564292 3:-77399339 MsG0380015974.01.T01:intron
TGTGGAATAGCTGAACCATC+TGG 0.564729 3:-77400601 MsG0380015974.01.T01:CDS
AGTAACAAAATCACCTCAGA+AGG 0.568318 3:+77399326 None:intergenic
AAAGGAGCAGGTTCACCAGA+TGG 0.579959 3:+77400586 None:intergenic
GTCGTCTTCAAATGAAGGCG+GGG 0.581705 3:+77397813 None:intergenic
TTTGGTGGAGTTATTAGCTG+AGG 0.595601 3:+77400664 None:intergenic
TTCAGCTATTCCACAACGAA+TGG 0.597518 3:+77400609 None:intergenic
ACCTGAGCAGGCGCACCTGG+AGG 0.601220 3:+77400316 None:intergenic
CTGGAGAACAGTGGATGTGT+TGG 0.601316 3:-77398095 MsG0380015974.01.T01:CDS
TATGTACTAGGTTATAGAAG+TGG 0.602466 3:-77398557 MsG0380015974.01.T01:intron
GTGAAAACAAAATGGCTGAA+AGG 0.617578 3:-77398640 MsG0380015974.01.T01:CDS
GCAACAGCAAGTTGTTCGTG+AGG 0.628043 3:-77400356 MsG0380015974.01.T01:CDS
CGAAAAGAGTAATGTTGCGT+CGG 0.630829 3:-77400390 MsG0380015974.01.T01:CDS
TATAGAAGTGGAGATAAATG+GGG 0.632566 3:-77398545 MsG0380015974.01.T01:CDS
AATGGGGTGAAGCAAAAGAG+TGG 0.635095 3:-77398529 MsG0380015974.01.T01:CDS
TTCAGGTACCTGGAGAACAG+TGG 0.643237 3:-77398104 MsG0380015974.01.T01:intron
GGGTCGTCTTCAAATGAAGG+CGG 0.644771 3:+77397811 None:intergenic
GCTACTGCTACCATTCGTTG+TGG 0.655679 3:-77400619 MsG0380015974.01.T01:CDS
TTACATATATCAGCATAGCA+AGG 0.671867 3:+77397775 None:intergenic
CAGAAGGACCAACTAGCCAG+TGG 0.676589 3:+77399342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATCCAAAAAAAAT+TGG + Chr3:77400065-77400084 None:intergenic 10.0%
!! AGCAATATAAATTACATAAT+TGG + Chr3:77398709-77398728 None:intergenic 15.0%
!! TAATGAAATATAAGCAAAAA+TGG + Chr3:77398101-77398120 None:intergenic 15.0%
!! TATTGTAATATATTTGTCAA+AGG - Chr3:77400453-77400472 MsG0380015974.01.T01:CDS 15.0%
!!! AGTAAAAACGTTTTATATAT+TGG - Chr3:77398932-77398951 MsG0380015974.01.T01:intron 15.0%
!!! ATTCTTAATTTTAGAAAAGT+GGG - Chr3:77400686-77400705 MsG0380015974.01.T01:CDS 15.0%
!!! GTTAGAATATATAAATCTTT+TGG + Chr3:77400281-77400300 None:intergenic 15.0%
!!! TATTCTTAATTTTAGAAAAG+TGG - Chr3:77400685-77400704 MsG0380015974.01.T01:CDS 15.0%
!!! TTGTGAAAACTTTTATATAT+AGG - Chr3:77398461-77398480 MsG0380015974.01.T01:intron 15.0%
!!! TTTCTATTTGAAACTTTATA+AGG - Chr3:77399316-77399335 MsG0380015974.01.T01:intron 15.0%
!!! TTTTTGCTTATATTTCATTA+TGG - Chr3:77398101-77398120 MsG0380015974.01.T01:CDS 15.0%
!! AAAAAAAAGAAGGAAAAGAA+AGG - Chr3:77397537-77397556 MsG0380015974.01.T01:intron 20.0%
!! AAAAGTAAATTGAGATTAAC+CGG + Chr3:77400625-77400644 None:intergenic 20.0%
!! ACAAAATTGAATGATATGAA+AGG + Chr3:77398295-77398314 None:intergenic 20.0%
!! ATCAACAAAAATTCATTAGA+AGG + Chr3:77399849-77399868 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG + Chr3:77399958-77399977 None:intergenic 20.0%
!! GTCATTGATATTTAGATTAT+TGG - Chr3:77399417-77399436 MsG0380015974.01.T01:intron 20.0%
!! TACATATTTCAAACTAATAC+AGG + Chr3:77398501-77398520 None:intergenic 20.0%
!! TTAAAAACGACTAAAAATCA+AGG + Chr3:77399126-77399145 None:intergenic 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG + Chr3:77399957-77399976 None:intergenic 20.0%
!! TTCTCATTTGTTTGTAATAT+TGG + Chr3:77400490-77400509 None:intergenic 20.0%
!! TTTCGATAAACAACTTAATT+TGG + Chr3:77397919-77397938 None:intergenic 20.0%
!!! AAAATAAAGTCAAACAGTTT+TGG + Chr3:77397847-77397866 None:intergenic 20.0%
!!! AGTTTGAAATATGTACATTA+TGG - Chr3:77398506-77398525 MsG0380015974.01.T01:intron 20.0%
!!! ATATTTTTTTTTCCTTGTTC+AGG - Chr3:77399876-77399895 MsG0380015974.01.T01:intron 20.0%
!!! GATTTTTTCACTAATGAATT+TGG - Chr3:77399959-77399978 MsG0380015974.01.T01:intron 20.0%
! ACGCTTGCAAAAAAAATTTA+AGG + Chr3:77398777-77398796 None:intergenic 25.0%
! ATACTTGGAATCATTGTTAA+TGG + Chr3:77399989-77400008 None:intergenic 25.0%
! ATTCATGTGTGAAAACAAAA+TGG - Chr3:77399349-77399368 MsG0380015974.01.T01:CDS 25.0%
! GATATTGTTGAATTATCTAC+TGG - Chr3:77397746-77397765 MsG0380015974.01.T01:intron 25.0%
! TAAGCAAACACTAAATTGAT+AGG + Chr3:77398733-77398752 None:intergenic 25.0%
! TGCTTATATTTCATTATGGA+GGG - Chr3:77398105-77398124 MsG0380015974.01.T01:intron 25.0%
! TTAGATTATTGGTATGTACT+AGG - Chr3:77399428-77399447 MsG0380015974.01.T01:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG - Chr3:77399451-77399470 MsG0380015974.01.T01:intron 25.0%
! TTGCTTATATTTCATTATGG+AGG - Chr3:77398104-77398123 MsG0380015974.01.T01:intron 25.0%
! TTGGACAATATTACATATCT+TGG + Chr3:77399035-77399054 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG + Chr3:77399183-77399202 None:intergenic 25.0%
!! CGTTTTATATATTGGAAGTT+AGG - Chr3:77398940-77398959 MsG0380015974.01.T01:intron 25.0%
!! GTAATTCAACCTTTTTGAAT+TGG - Chr3:77399243-77399262 MsG0380015974.01.T01:intron 25.0%
!! TCTCTTTTATGTTTCTTTCA+AGG - Chr3:77397724-77397743 MsG0380015974.01.T01:intron 25.0%
!! TTAAGTTGTTTATCGAAACA+AGG - Chr3:77397921-77397940 MsG0380015974.01.T01:intron 25.0%
!!! AAATCTTTTGGTTGATTGAA+TGG + Chr3:77400269-77400288 None:intergenic 25.0%
!!! AATATGAATCTTTTGACTGA+AGG - Chr3:77398533-77398552 MsG0380015974.01.T01:CDS 25.0%
!!! CTATCAGTGGTTATTTTTTT+AGG - Chr3:77399671-77399690 MsG0380015974.01.T01:intron 25.0%
!!! TATGACTGACCAATTTTTTT+TGG - Chr3:77400053-77400072 MsG0380015974.01.T01:intron 25.0%
AAAAGAAGGAAAAGAAAGGT+TGG - Chr3:77397541-77397560 MsG0380015974.01.T01:intron 30.0%
AAATATGCTTCAAGAGCAAA+TGG - Chr3:77397354-77397373 MsG0380015974.01.T01:intron 30.0%
AATTATTTCCACCAACAAGA+TGG - Chr3:77398594-77398613 MsG0380015974.01.T01:intron 30.0%
ACTAATCTTTGCATTGCTTA+TGG - Chr3:77399823-77399842 MsG0380015974.01.T01:intron 30.0%
AGGGAATGCTAAAAAAAAGA+AGG - Chr3:77397527-77397546 MsG0380015974.01.T01:intron 30.0%
AGTATACACTAATTCTGTCA+TGG + Chr3:77400395-77400414 None:intergenic 30.0%
ATGAGTTGTGATATGGTTTA+TGG - Chr3:77400156-77400175 MsG0380015974.01.T01:intron 30.0%
ATTATTTCCACCAACAAGAT+GGG - Chr3:77398595-77398614 MsG0380015974.01.T01:intron 30.0%
ATTTACCACCATTTGAAAAC+CGG + Chr3:77398869-77398888 None:intergenic 30.0%
CTAAAAATCAAGGAAATGAG+TGG + Chr3:77399116-77399135 None:intergenic 30.0%
GAATGATATGAAAGGAGTAA+TGG + Chr3:77398287-77398306 None:intergenic 30.0%
GTTATAGAAGTGGAGATAAA+TGG - Chr3:77399450-77399469 MsG0380015974.01.T01:intron 30.0%
TAACTACGTTATTGCAGTTT+AGG - Chr3:77398570-77398589 MsG0380015974.01.T01:intron 30.0%
TATAGAAGTGGAGATAAATG+GGG - Chr3:77399452-77399471 MsG0380015974.01.T01:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG - Chr3:77399440-77399459 MsG0380015974.01.T01:intron 30.0%
TCAAAGGAGTAATAATCAGA+AGG + Chr3:77399750-77399769 None:intergenic 30.0%
TCAATCCATTTATTTGTGAG+TGG - Chr3:77398837-77398856 MsG0380015974.01.T01:intron 30.0%
TCTACCTGCATTTCTTTATA+TGG + Chr3:77399497-77399516 None:intergenic 30.0%
TCTGATTATTACTCCTTTGA+TGG - Chr3:77399750-77399769 MsG0380015974.01.T01:intron 30.0%
TGTCATGGAAAATTATCCAA+AGG + Chr3:77400380-77400399 None:intergenic 30.0%
TTACATATATCAGCATAGCA+AGG + Chr3:77400225-77400244 None:intergenic 30.0%
TTAGTGAAAAAATCTTGGGT+AGG + Chr3:77399953-77399972 None:intergenic 30.0%
TTCTCATGATTTCTACTTTG+AGG - Chr3:77400421-77400440 MsG0380015974.01.T01:CDS 30.0%
TTGATTGAATGGAACACAAA+AGG + Chr3:77400258-77400277 None:intergenic 30.0%
TTGTGACAATGTTTGTAAGA+AGG - Chr3:77397779-77397798 MsG0380015974.01.T01:CDS 30.0%
! ATGCCTTTCATTTTACTCAT+GGG - Chr3:77399267-77399286 MsG0380015974.01.T01:intron 30.0%
! CATTTTAAACCAAACTTCAG+AGG + Chr3:77399184-77399203 None:intergenic 30.0%
! CTAACACAAAAATAACTTGC+AGG - Chr3:77400296-77400315 MsG0380015974.01.T01:CDS 30.0%
! CTTTTGCCTATATTTCATTC+CGG + Chr3:77398037-77398056 None:intergenic 30.0%
! GTATGATTATGAGAGTTTTG+TGG - Chr3:77397578-77397597 MsG0380015974.01.T01:intron 30.0%
! TTTGCTCTTGAAGCATATTT+TGG + Chr3:77397354-77397373 None:intergenic 30.0%
! TTTGGAACTTTGATTTCAGA+AGG - Chr3:77398348-77398367 MsG0380015974.01.T01:intron 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG - Chr3:77399514-77399533 MsG0380015974.01.T01:intron 30.0%
!! CAATGACAGTATTTTTGAGA+AGG - Chr3:77397452-77397471 MsG0380015974.01.T01:intron 30.0%
!! CAATTTTGTTGACTATGTAG+TGG - Chr3:77398306-77398325 MsG0380015974.01.T01:intron 30.0%
!! TACAAGTATTTTTGCTTTCC+CGG + Chr3:77398895-77398914 None:intergenic 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG + Chr3:77397522-77397541 None:intergenic 30.0%
AGTAACAAAATCACCTCAGA+AGG + Chr3:77398674-77398693 None:intergenic 35.0%
ATGTTAGTATCCACTATCCA+TGG - Chr3:77399711-77399730 MsG0380015974.01.T01:intron 35.0%
ATTGAATGGAACACAAAAGG+AGG + Chr3:77400255-77400274 None:intergenic 35.0%
CAAAATGGCTGAAAGGAAAA+AGG - Chr3:77399364-77399383 MsG0380015974.01.T01:CDS 35.0%
CATCCCATGAGTAAAATGAA+AGG + Chr3:77399273-77399292 None:intergenic 35.0%
CTTAACTATGCATCTCTTTC+TGG + Chr3:77397973-77397992 None:intergenic 35.0%
GAAAGACAAGAAGACATACT+TGG + Chr3:77400004-77400023 None:intergenic 35.0%
GTGAAAACAAAATGGCTGAA+AGG - Chr3:77399357-77399376 MsG0380015974.01.T01:CDS 35.0%
GTGAGAGTTACAAAATGTCT+TGG + Chr3:77399158-77399177 None:intergenic 35.0%
GTGTCCATATAAAGAAATGC+AGG - Chr3:77399490-77399509 MsG0380015974.01.T01:intron 35.0%
TAGCAGACCTTCTATAAAGA+GGG - Chr3:77398135-77398154 MsG0380015974.01.T01:intron 35.0%
TGAAAGTAATCAATCGAGTC+TGG - Chr3:77399631-77399650 MsG0380015974.01.T01:intron 35.0%
TGAAGACATGAGTTGTGATA+TGG - Chr3:77400149-77400168 MsG0380015974.01.T01:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG - Chr3:77399085-77399104 MsG0380015974.01.T01:intron 35.0%
TGTCCTGCATTTGACAATTT+AGG - Chr3:77398209-77398228 MsG0380015974.01.T01:intron 35.0%
TTAGCAGACCTTCTATAAAG+AGG - Chr3:77398134-77398153 MsG0380015974.01.T01:intron 35.0%
TTAGGACATATACTGGAGTT+TGG + Chr3:77400335-77400354 None:intergenic 35.0%
TTGCAGAGCTGCATAATATT+AGG - Chr3:77399084-77399103 MsG0380015974.01.T01:intron 35.0%
TTGTAGCTTAGGACATATAC+TGG + Chr3:77400342-77400361 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG + Chr3:77399255-77399274 None:intergenic 35.0%
! AGAAAGGTTGGTTGGATATT+TGG - Chr3:77397553-77397572 MsG0380015974.01.T01:intron 35.0%
! CATGCCTTTCATTTTACTCA+TGG - Chr3:77399266-77399285 MsG0380015974.01.T01:intron 35.0%
! GAAAGGTTGGTTGGATATTT+GGG - Chr3:77397554-77397573 MsG0380015974.01.T01:intron 35.0%
! GACTTTGTTTGCACGAAAAA+TGG - Chr3:77397482-77397501 MsG0380015974.01.T01:intron 35.0%
! GCTTAACTTCATAAGAGCAT+TGG - Chr3:77398748-77398767 MsG0380015974.01.T01:intron 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG + Chr3:77397432-77397451 None:intergenic 35.0%
!! ATCTCTTTGGAGTTGTCATT+AGG - Chr3:77398167-77398186 MsG0380015974.01.T01:intron 35.0%
AATTGAGATTAACCGGCCTT+TGG + Chr3:77400618-77400637 None:intergenic 40.0%
AATTGAGCCATGAGAAGGTT+TGG - Chr3:77398330-77398349 MsG0380015974.01.T01:intron 40.0%
AGGTCTAAGTTGTTCGCTTT+AGG - Chr3:77397941-77397960 MsG0380015974.01.T01:intron 40.0%
AGTCTGGAAAGTCTTGAACA+GGG - Chr3:77399647-77399666 MsG0380015974.01.T01:intron 40.0%
ATCAGCATAGCAAGGTTGTT+TGG + Chr3:77400217-77400236 None:intergenic 40.0%
ATGTGCAAGATGAAAGCCAA+AGG - Chr3:77400599-77400618 MsG0380015974.01.T01:CDS 40.0%
ATTAGGCCTCCACTTATGTT+GGG - Chr3:77398184-77398203 MsG0380015974.01.T01:intron 40.0%
CAAAGTTCCAAACCTTCTCA+TGG + Chr3:77398340-77398359 None:intergenic 40.0%
CAACTCCAAAGAGATTAGCA+AGG + Chr3:77398162-77398181 None:intergenic 40.0%
CATTTGCAGAGCCTGTAATA+GGG - Chr3:77397508-77397527 MsG0380015974.01.T01:intron 40.0%
CCCAAATGAATAGCCAACTT+GGG + Chr3:77398425-77398444 None:intergenic 40.0%
CGAAAAGAGTAATGTTGCGT+CGG - Chr3:77397607-77397626 MsG0380015974.01.T01:intron 40.0%
CTCATACTTAATACTCCCAC+CGG - Chr3:77398015-77398034 MsG0380015974.01.T01:CDS 40.0%
GATTTCAGAAGGCTCATAGT+AGG - Chr3:77398359-77398378 MsG0380015974.01.T01:intron 40.0%
GTGCCTAAATTGTCAAATGC+AGG + Chr3:77398215-77398234 None:intergenic 40.0%
TAATCAGAAGGTCCAACCTT+CGG + Chr3:77399738-77399757 None:intergenic 40.0%
TATGCATCTCTTTCTGGATG+AGG + Chr3:77397967-77397986 None:intergenic 40.0%
TCAAATGGTGGTAAATCCTC+CGG - Chr3:77398873-77398892 MsG0380015974.01.T01:intron 40.0%
TCGGTCCACTCACAAATAAA+TGG + Chr3:77398845-77398864 None:intergenic 40.0%
TCTATAATATCCACCTGAGC+AGG + Chr3:77397696-77397715 None:intergenic 40.0%
TCTGCTCATGATTGTAGCTT+AGG + Chr3:77400353-77400372 None:intergenic 40.0%
TGCCTATATTTCATTCCGGT+GGG + Chr3:77398033-77398052 None:intergenic 40.0%
TTCAGCTATTCCACAACGAA+TGG + Chr3:77397391-77397410 None:intergenic 40.0%
TTGCCTATATTTCATTCCGG+TGG + Chr3:77398034-77398053 None:intergenic 40.0%
TTTGGTGGAGTTATTAGCTG+AGG + Chr3:77397336-77397355 None:intergenic 40.0%
! CCAAGTTGGCTATTCATTTG+GGG - Chr3:77398423-77398442 MsG0380015974.01.T01:intron 40.0%
! CCCAAGTTGGCTATTCATTT+GGG - Chr3:77398422-77398441 MsG0380015974.01.T01:intron 40.0%
! GAAGGAAAAGAAAGGTTGGT+TGG - Chr3:77397545-77397564 MsG0380015974.01.T01:intron 40.0%
! TCCCAAGTTGGCTATTCATT+TGG - Chr3:77398421-77398440 MsG0380015974.01.T01:intron 40.0%
! TTTTTCCTTGTTCAGGTACC+TGG - Chr3:77399883-77399902 MsG0380015974.01.T01:intron 40.0%
!! AAGTATTTTTGCTTTCCCGG+AGG + Chr3:77398892-77398911 None:intergenic 40.0%
!! GCTCTTGAAGCATATTTTGG+TGG + Chr3:77397351-77397370 None:intergenic 40.0%
AATGGGGTGAAGCAAAAGAG+TGG - Chr3:77399468-77399487 MsG0380015974.01.T01:intron 45.0%
ACCTACAATCCTCTCCAAAG+TGG + Chr3:77399064-77399083 None:intergenic 45.0%
ACTCTTTCAGTGTCCCAAGT+TGG - Chr3:77398409-77398428 MsG0380015974.01.T01:intron 45.0%
ACTGGGTCGTCTTCAAATGA+AGG + Chr3:77400192-77400211 None:intergenic 45.0%
AGCAAGGTTGTTTGGAGACT+GGG + Chr3:77400209-77400228 None:intergenic 45.0%
AGGGTCCTTGCTAATCTCTT+TGG - Chr3:77398154-77398173 MsG0380015974.01.T01:intron 45.0%
ATCATGAGCAGACACTCCTT+TGG - Chr3:77400361-77400380 MsG0380015974.01.T01:CDS 45.0%
CAAATGGTGGTAAATCCTCC+GGG - Chr3:77398874-77398893 MsG0380015974.01.T01:intron 45.0%
CAGAAGGCTCATAGTAGGAA+TGG - Chr3:77398364-77398383 MsG0380015974.01.T01:intron 45.0%
CATTAGGCCTCCACTTATGT+TGG - Chr3:77398183-77398202 MsG0380015974.01.T01:intron 45.0%
CCACCATTTGAAAACCGGTT+CGG + Chr3:77398864-77398883 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG - Chr3:77397507-77397526 MsG0380015974.01.T01:intron 45.0%
CCCCAAATGAATAGCCAACT+TGG + Chr3:77398426-77398445 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG + Chr3:77397510-77397529 None:intergenic 45.0%
CTCCCACCGGAATGAAATAT+AGG - Chr3:77398028-77398047 MsG0380015974.01.T01:CDS 45.0%
CTTACTTGCAAGTTGCAAGC+TGG + Chr3:77399224-77399243 None:intergenic 45.0%
CTTCTTTCTATGCTTCCTCC+AGG - Chr3:77397666-77397685 MsG0380015974.01.T01:intron 45.0%
GAGTCTGGAAAGTCTTGAAC+AGG - Chr3:77399646-77399665 MsG0380015974.01.T01:intron 45.0%
GCAAGGACCCTCTTTATAGA+AGG + Chr3:77398145-77398164 None:intergenic 45.0%
GTGGAAATTGAGCCATGAGA+AGG - Chr3:77398325-77398344 MsG0380015974.01.T01:intron 45.0%
TAGCAAGGTTGTTTGGAGAC+TGG + Chr3:77400210-77400229 None:intergenic 45.0%
TATTTGTGAGTGGACCGAAC+CGG - Chr3:77398847-77398866 MsG0380015974.01.T01:intron 45.0%
TCTTGAACAGGGACTATCAG+TGG - Chr3:77399658-77399677 MsG0380015974.01.T01:intron 45.0%
TGCAAGCGTTCTGCATTTCA+AGG - Chr3:77398788-77398807 MsG0380015974.01.T01:intron 45.0%
TGTGGAATAGCTGAACCATC+TGG - Chr3:77397396-77397415 MsG0380015974.01.T01:intron 45.0%
TTGTCCAAGTGCTTCCACTT+TGG - Chr3:77399047-77399066 MsG0380015974.01.T01:intron 45.0%
! GTCTTTTGTCCTAAAGGAGC+AGG + Chr3:77397426-77397445 None:intergenic 45.0%
! TCCACTTTGGAGAGGATTGT+AGG - Chr3:77399060-77399079 MsG0380015974.01.T01:intron 45.0%
!! CGGTGGGAGTATTAAGTATG+AGG + Chr3:77398017-77398036 None:intergenic 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG - Chr3:77399172-77399191 MsG0380015974.01.T01:intron 45.0%
AAAGGAGCAGGTTCACCAGA+TGG + Chr3:77397414-77397433 None:intergenic 50.0%
AACCTTCGGACCATGGATAG+TGG + Chr3:77399724-77399743 None:intergenic 50.0%
AACTCTGCAGCCCATCTTGT+TGG + Chr3:77398608-77398627 None:intergenic 50.0%
ACTATCCATGGTCCGAAGGT+TGG - Chr3:77399723-77399742 MsG0380015974.01.T01:intron 50.0%
ATCCACTATCCATGGTCCGA+AGG - Chr3:77399719-77399738 MsG0380015974.01.T01:intron 50.0%
CAACACATCCACTGTTCTCC+AGG + Chr3:77399904-77399923 None:intergenic 50.0%
CAGGACAGACCCAACATAAG+TGG + Chr3:77398196-77398215 None:intergenic 50.0%
CCAACTAGCCAGTGGAAGAA+AGG + Chr3:77398650-77398669 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG - Chr3:77399902-77399921 MsG0380015974.01.T01:intron 50.0%
CTTCAAATGAAGGCGGGGTT+TGG + Chr3:77400182-77400201 None:intergenic 50.0%
GACAGACCCAACATAAGTGG+AGG + Chr3:77398193-77398212 None:intergenic 50.0%
GCAACAGCAAGTTGTTCGTG+AGG - Chr3:77397641-77397660 MsG0380015974.01.T01:intron 50.0%
GCAAGATGAAAGCCAAAGGC+CGG - Chr3:77400603-77400622 MsG0380015974.01.T01:CDS 50.0%
GCTACTGCTACCATTCGTTG+TGG - Chr3:77397378-77397397 MsG0380015974.01.T01:intron 50.0%
GGGTCGTCTTCAAATGAAGG+CGG + Chr3:77400189-77400208 None:intergenic 50.0%
GGTCGTCTTCAAATGAAGGC+GGG + Chr3:77400188-77400207 None:intergenic 50.0%
GTCGTCTTCAAATGAAGGCG+GGG + Chr3:77400187-77400206 None:intergenic 50.0%
GTTCTCCAGGTACCTGAACA+AGG + Chr3:77399891-77399910 None:intergenic 50.0%
TCTGGTGAACCTGCTCCTTT+AGG - Chr3:77397414-77397433 MsG0380015974.01.T01:intron 50.0%
TGACAGTGCCTTTCTTCCAC+TGG - Chr3:77398639-77398658 MsG0380015974.01.T01:CDS 50.0%
TTCAGGTACCTGGAGAACAG+TGG - Chr3:77399893-77399912 MsG0380015974.01.T01:intron 50.0%
! CAAGTGCTTCCACTTTGGAG+AGG - Chr3:77399052-77399071 MsG0380015974.01.T01:intron 50.0%
! CCTTTCTTCCACTGGCTAGT+TGG - Chr3:77398647-77398666 MsG0380015974.01.T01:CDS 50.0%
!! CCGAACCGGTTTTCAAATGG+TGG - Chr3:77398861-77398880 MsG0380015974.01.T01:intron 50.0%
!! CTCTCCAAAGTGGAAGCACT+TGG + Chr3:77399054-77399073 None:intergenic 50.0%
!! GGACCGAACCGGTTTTCAAA+TGG - Chr3:77398858-77398877 MsG0380015974.01.T01:intron 50.0%
AAGGTCCAACCTTCGGACCA+TGG + Chr3:77399731-77399750 None:intergenic 55.0%
ACAGCTCGATCAGTGAGCTG+AGG + Chr3:77399777-77399796 None:intergenic 55.0%
AGTGAGCTGAGGGCCATCAA+AGG + Chr3:77399766-77399785 None:intergenic 55.0%
CAGAAGGACCAACTAGCCAG+TGG + Chr3:77398658-77398677 None:intergenic 55.0%
CAGCTCGATCAGTGAGCTGA+GGG + Chr3:77399776-77399795 None:intergenic 55.0%
TCTGCAGCCCATCTTGTTGG+TGG + Chr3:77398605-77398624 None:intergenic 55.0%
! CTGGCTAGTTGGTCCTTCTG+AGG - Chr3:77398658-77398677 MsG0380015974.01.T01:CDS 55.0%
GCGCGCGCGCACACATACAT+CGG + Chr3:77399556-77399575 None:intergenic 65.0%
ACCTGAGCAGGCGCACCTGG+AGG + Chr3:77397684-77397703 None:intergenic 70.0%
TCCACCTGAGCAGGCGCACC+TGG + Chr3:77397687-77397706 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG - Chr3:77397683-77397702 MsG0380015974.01.T01:intron 70.0%
TCCTCCAGGTGCGCCTGCTC+AGG - Chr3:77397680-77397699 MsG0380015974.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77397306 77400713 77397306 ID=MsG0380015974.01;Name=MsG0380015974.01
Chr3 mRNA 77397306 77400713 77397306 ID=MsG0380015974.01.T01;Parent=MsG0380015974.01;Name=MsG0380015974.01.T01;_AED=0.44;_eAED=0.53;_QI=0|0.16|0.42|0.85|1|1|7|0|310
Chr3 exon 77400252 77400713 77400252 ID=MsG0380015974.01.T01:exon:14613;Parent=MsG0380015974.01.T01
Chr3 exon 77399340 77399432 77399340 ID=MsG0380015974.01.T01:exon:14612;Parent=MsG0380015974.01.T01
Chr3 exon 77398634 77398681 77398634 ID=MsG0380015974.01.T01:exon:14611;Parent=MsG0380015974.01.T01
Chr3 exon 77398508 77398569 77398508 ID=MsG0380015974.01.T01:exon:14610;Parent=MsG0380015974.01.T01
Chr3 exon 77397982 77398121 77397982 ID=MsG0380015974.01.T01:exon:14609;Parent=MsG0380015974.01.T01
Chr3 exon 77397779 77397874 77397779 ID=MsG0380015974.01.T01:exon:14608;Parent=MsG0380015974.01.T01
Chr3 exon 77397306 77397337 77397306 ID=MsG0380015974.01.T01:exon:14607;Parent=MsG0380015974.01.T01
Chr3 CDS 77400252 77400713 77400252 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77399340 77399432 77399340 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77398634 77398681 77398634 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77398508 77398569 77398508 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77397982 77398121 77397982 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77397779 77397874 77397779 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Chr3 CDS 77397306 77397337 77397306 ID=MsG0380015974.01.T01:cds;Parent=MsG0380015974.01.T01
Gene Sequence

>MsG0380015974.01.T01

ATGGTGGTTCTTAACTTTCAGCTTGTTCCTCAGCTAATAACTCCACCAAAATATGCTTCAAGAGCAAATGGTGCTACTGCTACCATTCGTTGTGGAATAGCTGAACCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAAAAGAAGGAAAAGAAAGGTTGGTTGGATATTTGGGAGTATGATTATGAGAGTTTTGTGGATGTGTCGAAAAGAGTAATGTTGCGTCGGTCTCGTTTGCAGCAACAGCAAGTTGTTCGTGAGGTTCTTCTTTCTATGCTTCCTCCAGGTGCGCCTGCTCAGGTGGATATTATAGAATTTTTACTCTCTTTTATGTTTCTTTCAAGGATATTGTTGAATTATCTACTGTTTAGGAAATTATTTCCACCAACAAGATGGGCTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTTGGTCCTTCTGAGGTTTATGTAACATTCATGTGTGAAAACAAAATGGCTGAAAGGAAAAAGGTTATAGAAGTGGAGATAAATGGGGTGAAGCAAAAGAGTGGTGTCCATATAAAGAAATGCAGGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCATTAACAATGATTCCAAGTATGTCTTCTTGTCTTTCATTACAAGACAAAAATTTTGAAGACATGAGTTGTGATATGGTTTATGGCCAAACCCCGCCTTCATTTGAAGACGACCCAGTCTCCAAACAACCTTGCTATGCTGATATATTGCTATTCTTAATTTTAGAAAAGTGGGATTAA

Protein sequence

>MsG0380015974.01.T01

MVVLNFQLVPQLITPPKYASRANGATATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKEKKGWLDIWEYDYESFVDVSKRVMLRRSRLQQQQVVREVLLSMLPPGAPAQVDIIEFLLSFMFLSRILLNYLLFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVYVTFMCENKMAERKKVIEVEINGVKQKSGVHIKKCRYLENSGCVGQCVNMCKIPTQDFFTNEFGLPLTMIPSMSSCLSLQDKNFEDMSCDMVYGQTPPSFEDDPVSKQPCYADILLFLILEKWD*