AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013506.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013506.01.T01 MTR_3g449930 81.743 241 4 1 1 241 1 201 7.70e-139 390
MsG0380013506.01.T01 MTR_3g449930 76.357 258 4 2 1 241 1 218 1.59e-134 380
MsG0380013506.01.T01 MTR_5g090410 55.849 265 51 6 2 241 3 226 4.76e-80 242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013506.01.T01 AT1G06680 55.344 262 54 4 1 241 1 220 1.02e-85 256
MsG0380013506.01.T01 AT1G06680 69.718 142 26 1 117 241 35 176 9.85e-64 198
MsG0380013506.01.T01 AT2G30790 59.756 82 16 1 177 241 1 82 9.06e-25 95.9

Find 82 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAGAGGTGGTTTA+AGG 0.210913 3:+39658899 MsG0380013506.01.T01:three_prime_UTR
TTGCTTGGATTCCACTTTGC+TGG 0.251510 3:-39657575 None:intergenic
GAAGAAATTAACCTCGTAAA+TGG 0.261965 3:+39659139 MsG0380013506.01.T01:three_prime_UTR
TTCACCAAAGTTCTTAATTT+AGG 0.265359 3:-39658967 None:intergenic
AACATGTGGTTGTTTGGATA+TGG 0.266125 3:-39656386 None:intergenic
ATATGTGAGAAATTATTTAT+TGG 0.270110 3:+39659117 MsG0380013506.01.T01:three_prime_UTR
TTCGTTGCAGCCAATGTCTT+TGG 0.280236 3:+39657491 MsG0380013506.01.T01:intron
ACCTGAGGAGTTCCTATCTA+AGG 0.292484 3:+39657712 MsG0380013506.01.T01:CDS
TGGAGTTGTAAGAGCATATT+GGG 0.306962 3:-39656556 None:intergenic
CTTTGAATTACATTTAGATA+TGG 0.310025 3:-39656428 None:intergenic
ATGGAGTTGTAAGAGCATAT+TGG 0.315427 3:-39656557 None:intergenic
TATACTAGACTCTAGCAAAA+TGG 0.359665 3:+39656509 MsG0380013506.01.T01:exon
TTGGTCTGTTGGTAACAATT+TGG 0.365385 3:-39656599 None:intergenic
GGGAACTCTCTCTCTTTGCT+TGG 0.385361 3:-39657590 None:intergenic
CGGACTCCGGTCTTGGTTGA+AGG 0.393563 3:+39659193 MsG0380013506.01.T01:three_prime_UTR
ATGTCTCCGGACTCCGGTCT+TGG 0.397287 3:+39659186 MsG0380013506.01.T01:three_prime_UTR
CGTTGAGACAAACTTCTAGA+TGG 0.406600 3:-39656576 None:intergenic
GTTGCCTAAATTAAGAACTT+TGG 0.414675 3:+39658963 MsG0380013506.01.T01:three_prime_UTR
GGAGACAAGAGGTGGTTTAA+GGG 0.417477 3:+39658900 MsG0380013506.01.T01:three_prime_UTR
GAGAGTTCAGCACCAGTGAT+TGG 0.419628 3:+39658753 MsG0380013506.01.T01:CDS
CTTATTCTTAAGTAAGCACT+TGG 0.421409 3:+39659013 MsG0380013506.01.T01:three_prime_UTR
GCATTGAACATGTGGTTGTT+TGG 0.425739 3:-39656392 None:intergenic
AACAATATGGTTTGGTCTGT+TGG 0.428277 3:-39656610 None:intergenic
CTCCTTGGTGCTGCTGCTGT+TGG 0.429596 3:+39656705 MsG0380013506.01.T01:CDS
TTGAATCCATCTCCATTGTA+AGG 0.429765 3:-39657542 None:intergenic
TCTGTGCCTTGCAAACAATA+TGG 0.436546 3:-39656623 None:intergenic
AGATTCTTAAAACCTTAGAT+AGG 0.450368 3:-39657724 None:intergenic
TTAGCACTTTCTGTACTCCT+TGG 0.453497 3:+39656690 MsG0380013506.01.T01:CDS
CTTTGCCTTTCCAAAGACAT+TGG 0.454759 3:-39657501 None:intergenic
TATGAATGAGACTGAGAGTA+GGG 0.459488 3:-39656468 None:intergenic
ATATAGTTTAAAATTCTCAA+TGG 0.470465 3:-39659098 None:intergenic
AGAGAGAGAGTTCCCTGGTC+AGG 0.474121 3:+39657598 MsG0380013506.01.T01:CDS
TACATTTGCAAGGCTCAAGC+TGG 0.486606 3:+39658879 MsG0380013506.01.T01:three_prime_UTR
ATTACAGCAACTGTAAATGA+TGG 0.489996 3:+39658850 MsG0380013506.01.T01:CDS
GCCTTGCAAACAATATGGTT+TGG 0.494429 3:-39656618 None:intergenic
TCTCCATAGGCAGCATCAGC+AGG 0.502473 3:-39656741 None:intergenic
TCACCTGCTGATGCTGCCTA+TGG 0.505052 3:+39656738 MsG0380013506.01.T01:CDS
TTACAGTTGCTGTAATCAGC+TGG 0.513113 3:-39658843 None:intergenic
ATATGAATGAGACTGAGAGT+AGG 0.515599 3:-39656469 None:intergenic
TAAATTAAGAACTTTGGTGA+AGG 0.520267 3:+39658969 MsG0380013506.01.T01:three_prime_UTR
GATGCTGCCTATGGAGAAGC+TGG 0.528839 3:+39656747 MsG0380013506.01.T01:CDS
CTGTCAGTGTTGTTTCTCGT+AGG 0.529367 3:+39656667 MsG0380013506.01.T01:CDS
TATCTCAAAGGATATGTCTC+CGG 0.531579 3:+39659173 MsG0380013506.01.T01:three_prime_UTR
TACTGTTTCCCACCAATCAC+TGG 0.540361 3:-39658765 None:intergenic
ACCTTAGATAGGAACTCCTC+AGG 0.540944 3:-39657713 None:intergenic
GTCAGTTGTTTGGACAAGAA+CGG 0.541430 3:-39657663 None:intergenic
AGGATACCTTCAACCAAGAC+CGG 0.544857 3:-39659199 None:intergenic
AACTGTTGGTTCCAGCAAAG+TGG 0.546443 3:+39657564 MsG0380013506.01.T01:CDS
TCGTATCTAAGAACCTGACC+AGG 0.546447 3:-39657611 None:intergenic
AAGGATATGTCTCCGGACTC+CGG 0.551083 3:+39659180 MsG0380013506.01.T01:three_prime_UTR
AAATTAAGAACTTTGGTGAA+GGG 0.554191 3:+39658970 MsG0380013506.01.T01:three_prime_UTR
ACCAAACCATATTGTTTGCA+AGG 0.554941 3:+39656617 MsG0380013506.01.T01:CDS
TGGAGATGGATTCAAACTGT+TGG 0.556213 3:+39657550 MsG0380013506.01.T01:CDS
CTTCAACCAAGACCGGAGTC+CGG 0.564149 3:-39659192 None:intergenic
TGCAGCCAATGTCTTTGGAA+AGG 0.567085 3:+39657496 MsG0380013506.01.T01:intron
GATAAATAAAAGTATCTCAA+AGG 0.567547 3:+39659161 MsG0380013506.01.T01:three_prime_UTR
TAAGATGTTTGCCACAGCTA+CGG 0.572617 3:-39658730 None:intergenic
AGTTCAGCACCAGTGATTGG+TGG 0.574912 3:+39658756 MsG0380013506.01.T01:CDS
GTTCAGCACCAGTGATTGGT+GGG 0.588274 3:+39658757 MsG0380013506.01.T01:CDS
AGGACTGCTGATGGAGATGA+AGG 0.590065 3:+39658810 MsG0380013506.01.T01:CDS
TAGATATGGTTTGTCTGACG+TGG 0.592205 3:-39656414 None:intergenic
CTCCTCAGGTGAACCATAGT+CGG 0.592937 3:-39657699 None:intergenic
TGATACAAATGCCGTAGCTG+TGG 0.593917 3:+39658719 MsG0380013506.01.T01:CDS
AGCAAAGAGAGAGAGTTCCC+TGG 0.594993 3:+39657593 MsG0380013506.01.T01:CDS
ATGGAAACTATACATTTGCA+AGG 0.600795 3:+39658869 MsG0380013506.01.T01:exon
AGAAATCAAATGAAAACTAG+TGG 0.609202 3:+39657372 MsG0380013506.01.T01:CDS
GGGAGCAAGAAAGTTTGTTG+AGG 0.618163 3:+39658920 MsG0380013506.01.T01:three_prime_UTR
GGCACAGAAACAAGAAGTTG+AGG 0.624235 3:+39656638 MsG0380013506.01.T01:CDS
AGTAGGGAGAGAGTGTTGTG+TGG 0.627412 3:-39656452 None:intergenic
CTGACGTGGCATTGAACATG+TGG 0.629632 3:-39656400 None:intergenic
GTGCAAGAAGCATTGTGTAG+AGG 0.636043 3:-39656532 None:intergenic
AGCCAACAGCAGCAGCACCA+AGG 0.639865 3:-39656707 None:intergenic
AGGCTCAAGCTGGAGACAAG+AGG 0.642347 3:+39658889 MsG0380013506.01.T01:three_prime_UTR
AAATATAATCAAAATAGCTG+TGG 0.642994 3:+39657296 MsG0380013506.01.T01:CDS
CTGCTGATGGAGATGAAGGT+GGG 0.658727 3:+39658814 MsG0380013506.01.T01:CDS
ACTGCTGATGGAGATGAAGG+TGG 0.659623 3:+39658813 MsG0380013506.01.T01:CDS
CTCAAGCTGGAGACAAGAGG+TGG 0.660302 3:+39658892 MsG0380013506.01.T01:three_prime_UTR
GGAGTTGTAAGAGCATATTG+GGG 0.678383 3:-39656555 None:intergenic
CACCGACTATGGTTCACCTG+AGG 0.694411 3:+39657697 MsG0380013506.01.T01:CDS
CGTATCTAAGAACCTGACCA+GGG 0.700077 3:-39657610 None:intergenic
TGGTCAGGTTCTTAGATACG+AGG 0.713849 3:+39657613 MsG0380013506.01.T01:CDS
GAGTTGTAAGAGCATATTGG+GGG 0.741082 3:-39656554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAATATATGTTCATA+AGG - Chr3:39657898-39657917 None:intergenic 10.0%
!! ATATGTGAGAAATTATTTAT+TGG + Chr3:39659117-39659136 MsG0380013506.01.T01:three_prime_UTR 15.0%
!! TCTAAAGATGAAAAAAAATA+AGG - Chr3:39656786-39656805 None:intergenic 15.0%
!! TTGTTTAATATTTAATCGAA+CGG + Chr3:39657117-39657136 MsG0380013506.01.T01:intron 15.0%
!!! ATATAGTTTAAAATTCTCAA+TGG - Chr3:39659101-39659120 None:intergenic 15.0%
!!! TATTCTAAGTAGTATTTTAA+AGG - Chr3:39657089-39657108 None:intergenic 15.0%
!! AAATATAATCAAAATAGCTG+TGG + Chr3:39657296-39657315 MsG0380013506.01.T01:CDS 20.0%
!! CTTTGAATTACATTTAGATA+TGG - Chr3:39656431-39656450 None:intergenic 20.0%
!!! ATGTTAATCACATTTTACTT+TGG + Chr3:39657331-39657350 MsG0380013506.01.T01:CDS 20.0%
!!! GAATACAATTTTCTAATCTT+AGG - Chr3:39656828-39656847 None:intergenic 20.0%
!!! GATAAATAAAAGTATCTCAA+AGG + Chr3:39659161-39659180 MsG0380013506.01.T01:three_prime_UTR 20.0%
!!! TTAGAAATTTGAAGTTATAG+AGG - Chr3:39658016-39658035 None:intergenic 20.0%
! AAAATGCCTTTGAACTTTAA+GGG + Chr3:39658231-39658250 MsG0380013506.01.T01:intron 25.0%
! AAATTAAGAACTTTGGTGAA+GGG + Chr3:39658970-39658989 MsG0380013506.01.T01:three_prime_UTR 25.0%
! AAGTTGTTTATAAATGTGAC+CGG + Chr3:39656927-39656946 MsG0380013506.01.T01:intron 25.0%
! AGAAATCAAATGAAAACTAG+TGG + Chr3:39657372-39657391 MsG0380013506.01.T01:CDS 25.0%
! AGATTCTTAAAACCTTAGAT+AGG - Chr3:39657727-39657746 None:intergenic 25.0%
! TAAATTAAGAACTTTGGTGA+AGG + Chr3:39658969-39658988 MsG0380013506.01.T01:three_prime_UTR 25.0%
! TCAACAAATATTGTATGTTG+AGG - Chr3:39657932-39657951 None:intergenic 25.0%
! TTCACCAAAGTTCTTAATTT+AGG - Chr3:39658970-39658989 None:intergenic 25.0%
! TTCCATTTGGAAAAAAAGTT+TGG + Chr3:39658089-39658108 MsG0380013506.01.T01:intron 25.0%
! TTTAATATTTAATCGAACGG+TGG + Chr3:39657120-39657139 MsG0380013506.01.T01:intron 25.0%
!!! AACCAAACTTTTTTTCCAAA+TGG - Chr3:39658094-39658113 None:intergenic 25.0%
!!! AAGTTTGGTTCAATGATTTT+TGG + Chr3:39658104-39658123 MsG0380013506.01.T01:intron 25.0%
!!! ACTTGGAGTTTTAATCATAA+TGG + Chr3:39659030-39659049 MsG0380013506.01.T01:three_prime_UTR 25.0%
!!! CTTTTATTTATCCATTTACG+AGG - Chr3:39659153-39659172 None:intergenic 25.0%
AAATTACCTCTGAATCAGTT+TGG - Chr3:39658343-39658362 None:intergenic 30.0%
AATGATGAGTTGTGCTAATA+AGG - Chr3:39658663-39658682 None:intergenic 30.0%
ACAGTACATTTCATAATGCA+GGG - Chr3:39658384-39658403 None:intergenic 30.0%
ACCATTGTATGAAGATTAGA+CGG + Chr3:39657035-39657054 MsG0380013506.01.T01:intron 30.0%
ATGATGAGTTGTGCTAATAA+GGG - Chr3:39658662-39658681 None:intergenic 30.0%
ATGGAAACTATACATTTGCA+AGG + Chr3:39658869-39658888 MsG0380013506.01.T01:exon 30.0%
ATTACAGCAACTGTAAATGA+TGG + Chr3:39658850-39658869 MsG0380013506.01.T01:CDS 30.0%
ATTCTTCTACTTAATGTACG+AGG + Chr3:39658140-39658159 MsG0380013506.01.T01:intron 30.0%
ATTTCAAACATAGAGTCAAC+TGG - Chr3:39657189-39657208 None:intergenic 30.0%
CAAATAAGATTACCACCAAT+AGG + Chr3:39658055-39658074 MsG0380013506.01.T01:intron 30.0%
CAAATTTCTAAATTCGTCAC+TGG + Chr3:39658025-39658044 MsG0380013506.01.T01:intron 30.0%
CATTATATAACTGACGTATC+TGG - Chr3:39656892-39656911 None:intergenic 30.0%
CCTTAAAAGATGATGCATAT+TGG + Chr3:39658416-39658435 MsG0380013506.01.T01:intron 30.0%
CTTATTCTTAAGTAAGCACT+TGG + Chr3:39659013-39659032 MsG0380013506.01.T01:three_prime_UTR 30.0%
GAAAATGCCTTTGAACTTTA+AGG + Chr3:39658230-39658249 MsG0380013506.01.T01:intron 30.0%
GAAGAAATTAACCTCGTAAA+TGG + Chr3:39659139-39659158 MsG0380013506.01.T01:three_prime_UTR 30.0%
GTTGCCTAAATTAAGAACTT+TGG + Chr3:39658963-39658982 MsG0380013506.01.T01:three_prime_UTR 30.0%
TATACTAGACTCTAGCAAAA+TGG + Chr3:39656509-39656528 MsG0380013506.01.T01:exon 30.0%
TCAAATGAAAACTAGTGGTT+TGG + Chr3:39657377-39657396 MsG0380013506.01.T01:intron 30.0%
TTATTGCCCTTAAAGTTCAA+AGG - Chr3:39658240-39658259 None:intergenic 30.0%
TTGAATGTAACCACATTTGT+CGG + Chr3:39658534-39658553 MsG0380013506.01.T01:intron 30.0%
! CCAATATGCATCATCTTTTA+AGG - Chr3:39658419-39658438 None:intergenic 30.0%
! TGTTCTTTTTGTCAGTTGTT+TGG - Chr3:39657676-39657695 None:intergenic 30.0%
!! ACAACATATCAGTTTTGACA+AGG + Chr3:39658790-39658809 MsG0380013506.01.T01:CDS 30.0%
!! CATCATCTTTTAAGGAAATC+TGG - Chr3:39658411-39658430 None:intergenic 30.0%
AAAAATACCAGCTTCTCCAT+AGG - Chr3:39656757-39656776 None:intergenic 35.0%
AAAAATCGACGAATGTTCAG+TGG + Chr3:39658179-39658198 MsG0380013506.01.T01:intron 35.0%
ACATTAAATTCCCTCGAGAA+CGG - Chr3:39657813-39657832 None:intergenic 35.0%
ACCAAACCATATTGTTTGCA+AGG + Chr3:39656617-39656636 MsG0380013506.01.T01:CDS 35.0%
AGGGCAATAACAAAAGTTCT+TGG + Chr3:39658250-39658269 MsG0380013506.01.T01:intron 35.0%
ATATGAATGAGACTGAGAGT+AGG - Chr3:39656472-39656491 None:intergenic 35.0%
ATATTTACAACCGTTCTCGA+GGG + Chr3:39657800-39657819 MsG0380013506.01.T01:intron 35.0%
CACAGTACATTTCATAATGC+AGG - Chr3:39658385-39658404 None:intergenic 35.0%
CTTATTCTCAAAGTCACTCT+TGG - Chr3:39657450-39657469 None:intergenic 35.0%
CTTGGCTGAAATTCAAGATT+TGG + Chr3:39658268-39658287 MsG0380013506.01.T01:intron 35.0%
TATATTTACAACCGTTCTCG+AGG + Chr3:39657799-39657818 MsG0380013506.01.T01:intron 35.0%
TATCTCAAAGGATATGTCTC+CGG + Chr3:39659173-39659192 MsG0380013506.01.T01:three_prime_UTR 35.0%
TATGAATGAGACTGAGAGTA+GGG - Chr3:39656471-39656490 None:intergenic 35.0%
TCGTCTGATCTTTAATCCAA+TGG + Chr3:39656974-39656993 MsG0380013506.01.T01:intron 35.0%
TCTATGTGTGAGTTCATATC+TGG - Chr3:39658483-39658502 None:intergenic 35.0%
TCTGATCTTTAATCCAATGG+TGG + Chr3:39656977-39656996 MsG0380013506.01.T01:intron 35.0%
TGTTTATAAATGTGACCGGA+GGG + Chr3:39656931-39656950 MsG0380013506.01.T01:intron 35.0%
TTCTACTTAATGTACGAGGA+AGG + Chr3:39658144-39658163 MsG0380013506.01.T01:intron 35.0%
TTCTGAACTTGAATTCCTCA+GGG + Chr3:39658690-39658709 MsG0380013506.01.T01:intron 35.0%
TTGAATCCATCTCCATTGTA+AGG - Chr3:39657545-39657564 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + Chr3:39656930-39656949 MsG0380013506.01.T01:intron 35.0%
TTTCTAAATTCGTCACTGGT+TGG + Chr3:39658029-39658048 MsG0380013506.01.T01:intron 35.0%
TTTCTGAACTTGAATTCCTC+AGG + Chr3:39658689-39658708 MsG0380013506.01.T01:intron 35.0%
! AAAAAGAACATCACCGACTA+TGG + Chr3:39657686-39657705 MsG0380013506.01.T01:CDS 35.0%
! ACAGACTTTTTGCCTTACAA+TGG + Chr3:39657530-39657549 MsG0380013506.01.T01:CDS 35.0%
! ATGGAGTTGTAAGAGCATAT+TGG - Chr3:39656560-39656579 None:intergenic 35.0%
! TGGAGTTGTAAGAGCATATT+GGG - Chr3:39656559-39656578 None:intergenic 35.0%
! TTTTTGCCTTACAATGGAGA+TGG + Chr3:39657536-39657555 MsG0380013506.01.T01:CDS 35.0%
!! AACAATATGGTTTGGTCTGT+TGG - Chr3:39656613-39656632 None:intergenic 35.0%
!! TTGGTCTGTTGGTAACAATT+TGG - Chr3:39656602-39656621 None:intergenic 35.0%
!!! ATGGAGAAGCTGGTATTTTT+TGG + Chr3:39656757-39656776 MsG0380013506.01.T01:intron 35.0%
!!! GATTTGGTTTTGATCTTTGC+AGG + Chr3:39658284-39658303 MsG0380013506.01.T01:intron 35.0%
ACACCAACAATTCGAATCGA+AGG - Chr3:39658601-39658620 None:intergenic 40.0%
ACCAACAATTCGAATCGAAG+GGG - Chr3:39658599-39658618 None:intergenic 40.0%
ATCCAAATAGCTCCTATTGG+TGG - Chr3:39658070-39658089 None:intergenic 40.0%
CACCAACAATTCGAATCGAA+GGG - Chr3:39658600-39658619 None:intergenic 40.0%
CGTTGAGACAAACTTCTAGA+TGG - Chr3:39656579-39656598 None:intergenic 40.0%
CTCGAGGGAATTTAATGTAC+AGG + Chr3:39657815-39657834 MsG0380013506.01.T01:intron 40.0%
CTTTGCCTTTCCAAAGACAT+TGG - Chr3:39657504-39657523 None:intergenic 40.0%
GCATTGAACATGTGGTTGTT+TGG - Chr3:39656395-39656414 None:intergenic 40.0%
GCCGTCTAATCTTCATACAA+TGG - Chr3:39657039-39657058 None:intergenic 40.0%
GCCTTGCAAACAATATGGTT+TGG - Chr3:39656621-39656640 None:intergenic 40.0%
GGAATCCAAATAGCTCCTAT+TGG - Chr3:39658073-39658092 None:intergenic 40.0%
GGAGCTATTTGGATTCCATT+TGG + Chr3:39658076-39658095 MsG0380013506.01.T01:intron 40.0%
GTCAGTTGTTTGGACAAGAA+CGG - Chr3:39657666-39657685 None:intergenic 40.0%
TAAGATGTTTGCCACAGCTA+CGG - Chr3:39658733-39658752 None:intergenic 40.0%
TACCACCAATAGGAGCTATT+TGG + Chr3:39658065-39658084 MsG0380013506.01.T01:intron 40.0%
TCTGTGCCTTGCAAACAATA+TGG - Chr3:39656626-39656645 None:intergenic 40.0%
TTACAGTTGCTGTAATCAGC+TGG - Chr3:39658846-39658865 None:intergenic 40.0%
TTAGCACTTTCTGTACTCCT+TGG + Chr3:39656690-39656709 MsG0380013506.01.T01:CDS 40.0%
TTTGTATCAAAACCACCCTG+AGG - Chr3:39658708-39658727 None:intergenic 40.0%
! GAGTTGTAAGAGCATATTGG+GGG - Chr3:39656557-39656576 None:intergenic 40.0%
! GGAGTTGTAAGAGCATATTG+GGG - Chr3:39656558-39656577 None:intergenic 40.0%
! TAGATATGGTTTGTCTGACG+TGG - Chr3:39656417-39656436 None:intergenic 40.0%
! TGGAGATGGATTCAAACTGT+TGG + Chr3:39657550-39657569 MsG0380013506.01.T01:CDS 40.0%
!!! TTGGTTTTGATCTTTGCAGG+TGG + Chr3:39658287-39658306 MsG0380013506.01.T01:intron 40.0%
ACCTGAGGAGTTCCTATCTA+AGG + Chr3:39657712-39657731 MsG0380013506.01.T01:CDS 45.0%
ACCTTAGATAGGAACTCCTC+AGG - Chr3:39657716-39657735 None:intergenic 45.0%
AGGATACCTTCAACCAAGAC+CGG - Chr3:39659202-39659221 None:intergenic 45.0%
CGTATCTAAGAACCTGACCA+GGG - Chr3:39657613-39657632 None:intergenic 45.0%
CTGAATCAGTTTGGCCAAGA+AGG - Chr3:39658334-39658353 None:intergenic 45.0%
GACATTGACACCGACAAATG+TGG - Chr3:39658547-39658566 None:intergenic 45.0%
GCTTGGAAAACAAGCCTTCT+TGG + Chr3:39658317-39658336 MsG0380013506.01.T01:intron 45.0%
GGAGACAAGAGGTGGTTTAA+GGG + Chr3:39658900-39658919 MsG0380013506.01.T01:three_prime_UTR 45.0%
GGCACAGAAACAAGAAGTTG+AGG + Chr3:39656638-39656657 MsG0380013506.01.T01:CDS 45.0%
TACATTTGCAAGGCTCAAGC+TGG + Chr3:39658879-39658898 MsG0380013506.01.T01:three_prime_UTR 45.0%
TACTGTTTCCCACCAATCAC+TGG - Chr3:39658768-39658787 None:intergenic 45.0%
TAGTCTCAAGTCTCCACCAT+TGG - Chr3:39656993-39657012 None:intergenic 45.0%
TCGTATCTAAGAACCTGACC+AGG - Chr3:39657614-39657633 None:intergenic 45.0%
TGAACTTGAATTCCTCAGGG+TGG + Chr3:39658693-39658712 MsG0380013506.01.T01:intron 45.0%
TGATACAAATGCCGTAGCTG+TGG + Chr3:39658719-39658738 MsG0380013506.01.T01:CDS 45.0%
TGGAGACAAGAGGTGGTTTA+AGG + Chr3:39658899-39658918 MsG0380013506.01.T01:three_prime_UTR 45.0%
TGGTCAGGTTCTTAGATACG+AGG + Chr3:39657613-39657632 MsG0380013506.01.T01:CDS 45.0%
TGTCAGACACTAACACATGC+TGG + Chr3:39658563-39658582 MsG0380013506.01.T01:intron 45.0%
TTCGTTGCAGCCAATGTCTT+TGG + Chr3:39657491-39657510 MsG0380013506.01.T01:intron 45.0%
TTCTCTGCAGTCACAGATTC+AGG - Chr3:39657159-39657178 None:intergenic 45.0%
TTGCTTGGATTCCACTTTGC+TGG - Chr3:39657578-39657597 None:intergenic 45.0%
! ACCCCTTCGATTCGAATTGT+TGG + Chr3:39658595-39658614 MsG0380013506.01.T01:intron 45.0%
! GCTCTAAGTTATACTCCCTC+CGG - Chr3:39656949-39656968 None:intergenic 45.0%
! TCTTGGCCAAACTGATTCAG+AGG + Chr3:39658334-39658353 MsG0380013506.01.T01:intron 45.0%
! TGCAGCCAATGTCTTTGGAA+AGG + Chr3:39657496-39657515 MsG0380013506.01.T01:intron 45.0%
! TTCATAAGGTGTCAGCTCAG+TGG - Chr3:39657884-39657903 None:intergenic 45.0%
!! AACTGTTGGTTCCAGCAAAG+TGG + Chr3:39657564-39657583 MsG0380013506.01.T01:CDS 45.0%
!! CTGTCAGTGTTGTTTCTCGT+AGG + Chr3:39656667-39656686 MsG0380013506.01.T01:CDS 45.0%
!! GGGAGCAAGAAAGTTTGTTG+AGG + Chr3:39658920-39658939 MsG0380013506.01.T01:three_prime_UTR 45.0%
!! GTGCAAGAAGCATTGTGTAG+AGG - Chr3:39656535-39656554 None:intergenic 45.0%
!! GTTTTGACAAGGACTGCTGA+TGG + Chr3:39658801-39658820 MsG0380013506.01.T01:CDS 45.0%
!! TTGCAGGTGGACTATTTGCT+TGG + Chr3:39658300-39658319 MsG0380013506.01.T01:intron 45.0%
AAGGATATGTCTCCGGACTC+CGG + Chr3:39659180-39659199 MsG0380013506.01.T01:three_prime_UTR 50.0%
ACTGCTGATGGAGATGAAGG+TGG + Chr3:39658813-39658832 MsG0380013506.01.T01:CDS 50.0%
AGCAAAGAGAGAGAGTTCCC+TGG + Chr3:39657593-39657612 MsG0380013506.01.T01:CDS 50.0%
AGGACTGCTGATGGAGATGA+AGG + Chr3:39658810-39658829 MsG0380013506.01.T01:CDS 50.0%
AGTTCAGCACCAGTGATTGG+TGG + Chr3:39658756-39658775 MsG0380013506.01.T01:CDS 50.0%
CTCCTCAGGTGAACCATAGT+CGG - Chr3:39657702-39657721 None:intergenic 50.0%
CTGCTGATGGAGATGAAGGT+GGG + Chr3:39658814-39658833 MsG0380013506.01.T01:CDS 50.0%
GAGAGTTCAGCACCAGTGAT+TGG + Chr3:39658753-39658772 MsG0380013506.01.T01:CDS 50.0%
GGGAACTCTCTCTCTTTGCT+TGG - Chr3:39657593-39657612 None:intergenic 50.0%
GTTCAGCACCAGTGATTGGT+GGG + Chr3:39658757-39658776 MsG0380013506.01.T01:CDS 50.0%
! CTGACGTGGCATTGAACATG+TGG - Chr3:39656403-39656422 None:intergenic 50.0%
!! AGTAGGGAGAGAGTGTTGTG+TGG - Chr3:39656455-39656474 None:intergenic 50.0%
AGAGAGAGAGTTCCCTGGTC+AGG + Chr3:39657598-39657617 MsG0380013506.01.T01:CDS 55.0%
AGGCTCAAGCTGGAGACAAG+AGG + Chr3:39658889-39658908 MsG0380013506.01.T01:three_prime_UTR 55.0%
CTCAAGCTGGAGACAAGAGG+TGG + Chr3:39658892-39658911 MsG0380013506.01.T01:three_prime_UTR 55.0%
CTTCAACCAAGACCGGAGTC+CGG - Chr3:39659195-39659214 None:intergenic 55.0%
GATGCTGCCTATGGAGAAGC+TGG + Chr3:39656747-39656766 MsG0380013506.01.T01:CDS 55.0%
TCACCTGCTGATGCTGCCTA+TGG + Chr3:39656738-39656757 MsG0380013506.01.T01:CDS 55.0%
TCTCCATAGGCAGCATCAGC+AGG - Chr3:39656744-39656763 None:intergenic 55.0%
! CACCGACTATGGTTCACCTG+AGG + Chr3:39657697-39657716 MsG0380013506.01.T01:CDS 55.0%
AGCCAACAGCAGCAGCACCA+AGG - Chr3:39656710-39656729 None:intergenic 60.0%
ATGTCTCCGGACTCCGGTCT+TGG + Chr3:39659186-39659205 MsG0380013506.01.T01:three_prime_UTR 60.0%
CGGACTCCGGTCTTGGTTGA+AGG + Chr3:39659193-39659212 MsG0380013506.01.T01:three_prime_UTR 60.0%
!! CTCCTTGGTGCTGCTGCTGT+TGG + Chr3:39656705-39656724 MsG0380013506.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 39656388 39659231 39656388 ID=MsG0380013506.01;Name=MsG0380013506.01
Chr3 mRNA 39656388 39659231 39656388 ID=MsG0380013506.01.T01;Parent=MsG0380013506.01;Name=MsG0380013506.01.T01;_AED=0.30;_eAED=0.36;_QI=140|0|0.75|1|1|1|4|362|250
Chr3 exon 39656388 39656768 39656388 ID=MsG0380013506.01.T01:exon:14437;Parent=MsG0380013506.01.T01
Chr3 exon 39657274 39657393 39657274 ID=MsG0380013506.01.T01:exon:14438;Parent=MsG0380013506.01.T01
Chr3 exon 39657501 39657733 39657501 ID=MsG0380013506.01.T01:exon:14439;Parent=MsG0380013506.01.T01
Chr3 exon 39658711 39659231 39658711 ID=MsG0380013506.01.T01:exon:14440;Parent=MsG0380013506.01.T01
Chr3 five_prime_UTR 39656388 39656527 39656388 ID=MsG0380013506.01.T01:five_prime_utr;Parent=MsG0380013506.01.T01
Chr3 CDS 39656528 39656768 39656528 ID=MsG0380013506.01.T01:cds;Parent=MsG0380013506.01.T01
Chr3 CDS 39657274 39657393 39657274 ID=MsG0380013506.01.T01:cds;Parent=MsG0380013506.01.T01
Chr3 CDS 39657501 39657733 39657501 ID=MsG0380013506.01.T01:cds;Parent=MsG0380013506.01.T01
Chr3 CDS 39658711 39658869 39658711 ID=MsG0380013506.01.T01:cds;Parent=MsG0380013506.01.T01
Chr3 three_prime_UTR 39658870 39659231 39658870 ID=MsG0380013506.01.T01:three_prime_utr;Parent=MsG0380013506.01.T01
Gene Sequence

>MsG0380013506.01.T01

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGCCAAATTGTTACCAACAGACCAAACCATATTGTTTGCAAGGCACAGAAACAAGAAGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAAGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGAAAATGCACATGTTGATTTTGAAAATATAATCAAAATAGCTGTGGTTGTTGAACTAAATGTTAATCACATTTTACTTTGGTTAAGTGAAATTTCTCGAAGAAATCAAATGAAAACTAGTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCTTACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCACCTGAGGAGTTCCTATCTAAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGGAAAGCACCAGCTGATTACAGCAACTGTAAATGA

Protein sequence

>MsG0380013506.01.T01

MASTQCFLHPQYALTTPSRSLSQRQIVTNRPNHIVCKAQKQEVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAENAHVDFENIIKIAVVVELNVNHILLWLSEISRRNQMKTSANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKAPADYSNCK*