AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036548.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036548.01.T01 MTR_7g013770 84.615 624 4 3 1 532 54 677 0.0 1042
MsG0780036548.01.T01 MTR_3g025900 36.842 589 279 8 26 532 42 619 2.29e-117 360
MsG0780036548.01.T01 MTR_4g103540 39.958 478 197 10 118 532 240 690 4.34e-96 306
MsG0780036548.01.T01 MTR_8g021330 37.136 447 211 11 143 521 161 605 2.91e-82 268
MsG0780036548.01.T01 MTR_5g073450 33.937 442 228 10 140 522 198 634 1.80e-71 240
MsG0780036548.01.T01 MTR_3g031130 32.517 449 235 8 134 522 180 620 1.56e-68 232
MsG0780036548.01.T01 MTR_7g026630 29.195 435 230 10 157 521 224 650 1.42e-57 203
MsG0780036548.01.T01 MTR_1g057560 30.698 430 240 8 145 521 201 625 5.63e-57 201
MsG0780036548.01.T01 MTR_1g090620 28.090 445 242 6 145 521 207 641 1.12e-56 201
MsG0780036548.01.T01 MTR_5g073460 30.538 465 254 9 123 524 237 695 7.52e-56 199
MsG0780036548.01.T01 MTR_6g033310 28.929 439 245 9 150 522 289 726 2.77e-54 195
MsG0780036548.01.T01 MTR_2g096230 28.507 442 234 11 144 521 158 581 2.67e-50 182
MsG0780036548.01.T01 MTR_1g117090 27.447 470 243 11 157 532 212 677 2.48e-49 181
MsG0780036548.01.T01 MTR_1g067480 27.872 470 264 12 115 519 141 600 5.28e-45 167
MsG0780036548.01.T01 MTR_1g067460 25.725 517 305 11 68 519 97 599 3.93e-40 154
MsG0780036548.01.T01 MTR_4g062330 24.689 482 288 10 97 515 129 598 6.19e-37 145
MsG0780036548.01.T01 MTR_5g074130 25.576 434 269 9 142 525 250 679 6.72e-31 127
MsG0780036548.01.T01 MTR_5g073920 25.000 416 250 10 157 523 259 661 4.04e-28 119
MsG0780036548.01.T01 MTR_5g073620 26.836 354 187 9 134 427 268 609 3.67e-27 117
MsG0780036548.01.T01 MTR_5g073620 33.714 175 112 2 353 524 898 1071 3.60e-20 95.1
MsG0780036548.01.T01 MTR_3g464010 26.144 459 265 15 126 524 227 671 3.96e-25 110
MsG0780036548.01.T01 MTR_4g008260 24.834 451 261 11 144 531 216 651 1.12e-24 108
MsG0780036548.01.T01 MTR_1g009620 25.212 353 226 8 206 527 320 665 1.94e-22 101
MsG0780036548.01.T01 MTR_5g073780 33.143 175 113 2 353 524 53 226 5.71e-21 92.0
MsG0780036548.01.T01 MTR_5g093530 26.087 322 196 7 213 519 276 570 2.64e-20 94.7
MsG0780036548.01.T01 MTR_5g073490 32.335 167 92 3 359 520 3 153 1.63e-18 83.2
MsG0780036548.01.T01 MTR_5g073480 23.982 442 196 14 132 510 256 620 1.76e-18 89.4
MsG0780036548.01.T01 MTR_0229s0040 27.411 197 131 3 343 527 24 220 1.52e-16 79.7
MsG0780036548.01.T01 MTR_5g073770 26.887 212 109 4 118 283 165 376 7.37e-14 73.9
MsG0780036548.01.T01 MTR_5g073820 25.503 298 168 10 113 373 152 432 2.36e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036548.01.T01 AT3G29400 43.914 608 243 12 23 532 51 658 9.27e-143 426
MsG0780036548.01.T01 AT5G61010 35.417 576 276 6 30 520 61 625 5.79e-112 346
MsG0780036548.01.T01 AT5G61010 35.417 576 276 6 30 520 61 625 5.79e-112 346
MsG0780036548.01.T01 AT5G50380 36.145 581 256 16 56 532 113 682 2.24e-102 323
MsG0780036548.01.T01 AT3G14090 34.978 446 218 10 143 521 173 613 6.13e-80 262
MsG0780036548.01.T01 AT1G72470 35.590 458 227 10 131 521 165 621 1.04e-78 259
MsG0780036548.01.T01 AT1G54090 34.763 443 224 9 143 521 170 611 5.51e-76 252
MsG0780036548.01.T01 AT5G58430 30.115 435 240 6 142 522 195 619 5.74e-64 220
MsG0780036548.01.T01 AT5G03540 29.978 447 241 8 138 521 78 515 5.11e-59 204
MsG0780036548.01.T01 AT5G03540 29.978 447 241 8 138 521 193 630 4.23e-58 204
MsG0780036548.01.T01 AT5G03540 29.978 447 241 8 138 521 219 656 1.16e-57 204
MsG0780036548.01.T01 AT1G07000 28.571 448 244 8 134 522 167 597 4.19e-55 195
MsG0780036548.01.T01 AT5G13150 29.505 444 237 10 148 522 209 645 7.55e-55 196
MsG0780036548.01.T01 AT5G52340 28.378 444 236 7 142 521 198 623 1.46e-53 192
MsG0780036548.01.T01 AT5G13990 27.517 596 324 17 23 522 99 682 4.01e-53 191
MsG0780036548.01.T01 AT1G07725 28.341 434 229 10 151 521 177 591 7.01e-49 179
MsG0780036548.01.T01 AT5G52350 28.009 432 261 7 138 521 148 577 7.18e-46 170
MsG0780036548.01.T01 AT2G28640 26.559 433 253 8 150 524 156 581 1.03e-45 169
MsG0780036548.01.T01 AT5G59730 28.698 453 252 12 137 523 153 600 6.84e-45 167
MsG0780036548.01.T01 AT5G59730 28.698 453 252 12 137 523 153 600 7.50e-45 167
MsG0780036548.01.T01 AT2G39380 24.208 442 254 7 150 522 182 611 1.99e-41 158
MsG0780036548.01.T01 AT3G09520 25.451 499 272 12 97 519 130 604 9.26e-38 147
MsG0780036548.01.T01 AT2G28650 25.776 419 242 9 154 519 152 554 2.47e-36 142
MsG0780036548.01.T01 AT3G09530 23.764 526 307 14 70 521 97 602 9.26e-33 133
MsG0780036548.01.T01 AT3G55150 23.982 442 254 9 150 522 183 611 4.89e-31 127
MsG0780036548.01.T01 AT4G31540 24.702 336 227 7 206 519 323 654 1.07e-24 108
MsG0780036548.01.T01 AT1G51640 23.563 348 229 6 206 520 283 626 7.02e-18 87.4

Find 114 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATCGATGATTTGGGATT+TGG 0.227503 7:-9610672 MsG0780036548.01.T01:CDS
GAGAAGGAGGAGGGGAAGAT+AGG 0.232008 7:-9610818 MsG0780036548.01.T01:CDS
CTTCTCACTTTGTATGTTCA+TGG 0.251343 7:+9610835 None:intergenic
AGGAAGATCAATCGATGATT+TGG 0.283223 7:-9610679 MsG0780036548.01.T01:CDS
TATTGAAGATGTCTTGAAAA+TGG 0.283952 7:-9610160 MsG0780036548.01.T01:CDS
TGATTTAGAAAATTATCTTT+TGG 0.292941 7:-9609034 MsG0780036548.01.T01:CDS
TACATGGCTGAAAAGGTTAA+AGG 0.293386 7:-9609420 MsG0780036548.01.T01:CDS
TTCCATTCTCAACTTTCTTA+AGG 0.294818 7:-9609301 MsG0780036548.01.T01:CDS
AGTTGTTGCAAAATCCTATT+AGG 0.296540 7:-9608990 MsG0780036548.01.T01:CDS
CAATCGATGATTTGGGATTT+GGG 0.298646 7:-9610671 MsG0780036548.01.T01:CDS
TTAAAGTGATTCAAGCTTAT+AGG 0.315348 7:-9609116 MsG0780036548.01.T01:CDS
ACAACGACTTGGTTTGATTC+AGG 0.317391 7:-9610720 MsG0780036548.01.T01:CDS
AGGAGGAGGGGAAGATAGGG+AGG 0.319656 7:-9610814 MsG0780036548.01.T01:CDS
AAGCTTATACCATTGTTAGA+AGG 0.328404 7:-9610230 MsG0780036548.01.T01:CDS
TCGGCTTCGAGGATATTTAC+AGG 0.329702 7:-9609203 MsG0780036548.01.T01:CDS
TGCTATTATCATCTCCTAAT+AGG 0.331305 7:+9608976 None:intergenic
ACAAAACAAGCTTGACTAAC+AGG 0.350658 7:+9610022 None:intergenic
GAAGATAGGGAGGGAAAAGG+AGG 0.356692 7:-9610804 MsG0780036548.01.T01:CDS
AGATTTGCGGATTTCTATAT+CGG 0.356841 7:-9609139 MsG0780036548.01.T01:CDS
TTCAGGAGAAAATAATGAAA+TGG 0.362671 7:-9610703 MsG0780036548.01.T01:CDS
TTTGGTGAAGCTATGTCTAT+TGG 0.365289 7:-9609962 MsG0780036548.01.T01:CDS
AGAAGGAGGAGGGGAAGATA+GGG 0.365916 7:-9610817 MsG0780036548.01.T01:CDS
CTCAACTTTCTTAAGGATGA+AGG 0.371916 7:-9609294 MsG0780036548.01.T01:CDS
TGACATCAATGCTTTGTATT+CGG 0.372086 7:-9609873 MsG0780036548.01.T01:CDS
TTCAGCTTCGCGAAGATTTG+CGG 0.372177 7:-9609152 MsG0780036548.01.T01:CDS
GGGGAAGATAGGGAGGGAAA+AGG 0.388497 7:-9610807 MsG0780036548.01.T01:CDS
AATGAACAAACACTCATCTA+AGG 0.398840 7:+9610203 None:intergenic
GGAAGATCAATCGATGATTT+GGG 0.400737 7:-9610678 MsG0780036548.01.T01:CDS
TTGGCTTCTGTTATCATCTT+CGG 0.401388 7:+9609581 None:intergenic
GGACGAGGTGGACGAGGAGG+AGG 0.408834 7:-9610765 MsG0780036548.01.T01:CDS
TCTTCGCGAAGCTGAACATC+TGG 0.409566 7:+9609159 None:intergenic
TCAGGAGAAAATAATGAAAT+GGG 0.414181 7:-9610702 MsG0780036548.01.T01:CDS
GTGTTTGTTCATTCTTGAAA+TGG 0.417456 7:-9610193 MsG0780036548.01.T01:CDS
TTCGGACGAGGTTGGTTCCT+CGG 0.417915 7:-9609855 MsG0780036548.01.T01:CDS
CGTGTCAGGTGACGATGAAA+TGG 0.419107 7:+9609614 None:intergenic
CCAAGACTGAAGCAAATGAT+AGG 0.421729 7:+9609520 None:intergenic
CAAGCTTATAGGACATTTGT+TGG 0.424622 7:-9609105 MsG0780036548.01.T01:CDS
CCTACATTACATGGCTGAAA+AGG 0.424669 7:-9609427 MsG0780036548.01.T01:CDS
ATCGTCACCTGACACGAGTC+CGG 0.427795 7:-9609607 MsG0780036548.01.T01:CDS
CAGCTGTGATTCCTGATCTC+AGG 0.429360 7:-9610302 MsG0780036548.01.T01:CDS
AAATACTCAGACGTTTCTTC+AGG 0.429562 7:+9610647 None:intergenic
GAGAATTCGTATCAATTTCT+CGG 0.430289 7:+9609928 None:intergenic
TTCGTATCAATTTCTCGGGT+TGG 0.433899 7:+9609933 None:intergenic
CCTATCATTTGCTTCAGTCT+TGG 0.436027 7:-9609520 MsG0780036548.01.T01:CDS
AGCGAGGAAGATGTTGTTGA+TGG 0.439521 7:-9610426 MsG0780036548.01.T01:CDS
ATCCTTAAGAAAGTTGAGAA+TGG 0.446088 7:+9609299 None:intergenic
TCTGAACTTAGGATCATATT+CGG 0.456601 7:-9609396 MsG0780036548.01.T01:CDS
CTGTTATCATCTTCGGTACC+CGG 0.467583 7:+9609588 None:intergenic
AGAATTCGTATCAATTTCTC+GGG 0.468076 7:+9609929 None:intergenic
ACATGGCTGAAAAGGTTAAA+GGG 0.470527 7:-9609419 MsG0780036548.01.T01:CDS
TCGGTACCCGGACTCGTGTC+AGG 0.474489 7:+9609600 None:intergenic
AATGGATCCGAAAACACAAC+TGG 0.475821 7:-9609368 MsG0780036548.01.T01:CDS
AAGCTTCTACCTCGGCTTCG+AGG 0.476916 7:-9609214 MsG0780036548.01.T01:CDS
CACGAGGTTCTGAACAGATT+GGG 0.480214 7:-9609818 MsG0780036548.01.T01:CDS
TCCTGGTAGATTTCCCTCAA+TGG 0.483428 7:-9609553 MsG0780036548.01.T01:CDS
GCGCATATTGATCGAGAAGT+TGG 0.488485 7:-9610606 MsG0780036548.01.T01:CDS
CAATGCTTTGTATTCGGACG+AGG 0.488922 7:-9609867 MsG0780036548.01.T01:CDS
TTTACAGGATTCAAACGGCT+TGG 0.489894 7:-9609188 MsG0780036548.01.T01:CDS
AGATGTCTTGAAAATGGAAT+GGG 0.491461 7:-9610154 MsG0780036548.01.T01:CDS
GAGACATACTCAGGTTCAAA+AGG 0.492494 7:+9610459 None:intergenic
TGTTCATTCTTGAAATGGAA+AGG 0.497581 7:-9610188 MsG0780036548.01.T01:CDS
AAAGGAGGATGATATAGATA+AGG 0.499854 7:-9610789 MsG0780036548.01.T01:CDS
CTTATAGGACATTTGTTGGA+AGG 0.502026 7:-9609101 MsG0780036548.01.T01:CDS
CCACGAGGTTCTGAACAGAT+TGG 0.503504 7:-9609819 MsG0780036548.01.T01:CDS
AGGAATTGCCGCGCCATTGA+GGG 0.506822 7:+9609540 None:intergenic
TTTGCGATACACCTGAGATC+AGG 0.508198 7:+9610291 None:intergenic
ATCAATTTCTCGGGTTGGTG+AGG 0.514697 7:+9609938 None:intergenic
AGGTTAAAGGGTCTGAACTT+AGG 0.515044 7:-9609407 MsG0780036548.01.T01:CDS
GAGGAGGAGGAAGAAGGTGT+TGG 0.517714 7:-9610752 MsG0780036548.01.T01:CDS
AACAGAAGCCAAGCATCTCC+TGG 0.521198 7:-9609570 MsG0780036548.01.T01:CDS
TCGTCACCTGACACGAGTCC+GGG 0.521282 7:-9609606 MsG0780036548.01.T01:CDS
AGCTTATACCATTGTTAGAA+GGG 0.522929 7:-9610229 MsG0780036548.01.T01:CDS
AATGAACAACCTACATTACA+TGG 0.524061 7:-9609436 MsG0780036548.01.T01:CDS
GAAATCTACCAGGAGATGCT+TGG 0.524343 7:+9609562 None:intergenic
AAGATGTCTTGAAAATGGAA+TGG 0.530741 7:-9610155 MsG0780036548.01.T01:CDS
GGATATTTACAGGATTCAAA+CGG 0.532545 7:-9609193 MsG0780036548.01.T01:CDS
TAAGGAGGACGAGGTGGACG+AGG 0.533562 7:-9610771 MsG0780036548.01.T01:CDS
GGAGGATGATATAGATAAGG+AGG 0.534132 7:-9610786 MsG0780036548.01.T01:CDS
TCTGAAAGATCAAGAAGAAG+AGG 0.540005 7:-9609640 MsG0780036548.01.T01:CDS
TGATATAGATAAGGAGGACG+AGG 0.540858 7:-9610780 MsG0780036548.01.T01:CDS
GAATACAAAGCATTGATGTC+AGG 0.541545 7:+9609875 None:intergenic
CTGAGATCAGGAATCACAGC+TGG 0.549368 7:+9610303 None:intergenic
TGAAATACGAGAGAGCTAGT+TGG 0.555215 7:-9609326 MsG0780036548.01.T01:CDS
GTGGACGAGGAGGAGGAAGA+AGG 0.558808 7:-9610758 MsG0780036548.01.T01:CDS
GGAGGACGAGGTGGACGAGG+AGG 0.563413 7:-9610768 MsG0780036548.01.T01:CDS
GCCATTGAGGGAAATCTACC+AGG 0.565256 7:+9609552 None:intergenic
GGATCATATTCGGAGACGAA+TGG 0.566493 7:-9609386 MsG0780036548.01.T01:CDS
TAGGAATTGCCGCGCCATTG+AGG 0.571255 7:+9609539 None:intergenic
TTTGAGACAGAATTTGAACC+GGG 0.573177 7:+9609261 None:intergenic
AAGTTACGAAGCTTCTACCT+CGG 0.578858 7:-9609222 MsG0780036548.01.T01:CDS
TGTAAATATCCTCGAAGCCG+AGG 0.581914 7:+9609205 None:intergenic
GCTTTGTATTCGGACGAGGT+TGG 0.582361 7:-9609863 MsG0780036548.01.T01:CDS
GGAGGAGGGGAAGATAGGGA+GGG 0.582716 7:-9610813 MsG0780036548.01.T01:CDS
GCGAGGAAGATGTTGTTGAT+GGG 0.586419 7:-9610425 MsG0780036548.01.T01:CDS
CATGAACATACAAAGTGAGA+AGG 0.595930 7:-9610834 MsG0780036548.01.T01:CDS
GGAGAAAATAATGAAATGGG+AGG 0.598922 7:-9610699 MsG0780036548.01.T01:CDS
GATCGAAACGAGACATACTC+AGG 0.599078 7:+9610450 None:intergenic
CATACAAAGTGAGAAGGAGG+AGG 0.600227 7:-9610828 MsG0780036548.01.T01:CDS
ATCAATGACATGCTCTTCAG+TGG 0.607832 7:+9610335 None:intergenic
TACAAAGTGAGAAGGAGGAG+GGG 0.610000 7:-9610826 MsG0780036548.01.T01:CDS
GATGAAGGAATTCACGCTCC+CGG 0.612751 7:-9609279 MsG0780036548.01.T01:CDS
GGTGTTATTGAACAACGACT+TGG 0.615375 7:-9610731 MsG0780036548.01.T01:CDS
TATAGATAAGGAGGACGAGG+TGG 0.620009 7:-9610777 MsG0780036548.01.T01:CDS
TAAGGCATCCCTTCTAACAA+TGG 0.621969 7:+9610221 None:intergenic
ATACAAAGTGAGAAGGAGGA+GGG 0.633932 7:-9610827 MsG0780036548.01.T01:CDS
GAACATACAAAGTGAGAAGG+AGG 0.636230 7:-9610831 MsG0780036548.01.T01:CDS
ATATTGATCGAGAAGTTGGA+AGG 0.643451 7:-9610602 MsG0780036548.01.T01:CDS
TGTCTCGTTTCGATCGAGCG+AGG 0.647882 7:-9610442 MsG0780036548.01.T01:CDS
GTAGATTTCCCTCAATGGCG+CGG 0.659563 7:-9609548 MsG0780036548.01.T01:CDS
AGTCTTGGAGAACAATCTCG+AGG 0.679517 7:-9609505 MsG0780036548.01.T01:CDS
GGTTCACTTTGAATGCCACG+AGG 0.713802 7:-9609834 MsG0780036548.01.T01:CDS
CCAATCTGTTCAGAACCTCG+TGG 0.714380 7:+9609819 None:intergenic
GATGTCTTGAAAATGGAATG+GGG 0.730786 7:-9610153 MsG0780036548.01.T01:intron
GTGGCATTCAAAGTGAACCG+AGG 0.739746 7:+9609838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTAGAAAATTATCTTT+TGG - Chr7:9610783-9610802 MsG0780036548.01.T01:CDS 15.0%
!! AGATATGTATGAATTATCTT+CGG - Chr7:9610119-9610138 MsG0780036548.01.T01:intron 20.0%
! TATTGAAGATGTCTTGAAAA+TGG - Chr7:9609657-9609676 MsG0780036548.01.T01:CDS 25.0%
! TCAGGAGAAAATAATGAAAT+GGG - Chr7:9609115-9609134 MsG0780036548.01.T01:CDS 25.0%
! TTAAAGTGATTCAAGCTTAT+AGG - Chr7:9610701-9610720 MsG0780036548.01.T01:CDS 25.0%
! TTCAGGAGAAAATAATGAAA+TGG - Chr7:9609114-9609133 MsG0780036548.01.T01:CDS 25.0%
!! TATCTTTTGGATTTCTTTGA+AGG - Chr7:9610796-9610815 MsG0780036548.01.T01:CDS 25.0%
AAAGGAGGATGATATAGATA+AGG - Chr7:9609028-9609047 MsG0780036548.01.T01:CDS 30.0%
AAGATGTCTTGAAAATGGAA+TGG - Chr7:9609662-9609681 MsG0780036548.01.T01:intron 30.0%
AAGCTTATACCATTGTTAGA+AGG - Chr7:9609587-9609606 MsG0780036548.01.T01:CDS 30.0%
AATGAACAAACACTCATCTA+AGG + Chr7:9609617-9609636 None:intergenic 30.0%
AATGAACAACCTACATTACA+TGG - Chr7:9610381-9610400 MsG0780036548.01.T01:CDS 30.0%
AGAATTCGTATCAATTTCTC+GGG + Chr7:9609891-9609910 None:intergenic 30.0%
AGATGTCTTGAAAATGGAAT+GGG - Chr7:9609663-9609682 MsG0780036548.01.T01:intron 30.0%
AGATTTGCGGATTTCTATAT+CGG - Chr7:9610678-9610697 MsG0780036548.01.T01:CDS 30.0%
AGCTTATACCATTGTTAGAA+GGG - Chr7:9609588-9609607 MsG0780036548.01.T01:CDS 30.0%
AGTTGTTGCAAAATCCTATT+AGG - Chr7:9610827-9610846 MsG0780036548.01.T01:CDS 30.0%
ATCCTTAAGAAAGTTGAGAA+TGG + Chr7:9610521-9610540 None:intergenic 30.0%
GAGAATTCGTATCAATTTCT+CGG + Chr7:9609892-9609911 None:intergenic 30.0%
GGATATTTACAGGATTCAAA+CGG - Chr7:9610624-9610643 MsG0780036548.01.T01:CDS 30.0%
GTGTTTGTTCATTCTTGAAA+TGG - Chr7:9609624-9609643 MsG0780036548.01.T01:CDS 30.0%
TCAAAGATCAAAAGATGGAT+TGG - Chr7:9609697-9609716 MsG0780036548.01.T01:intron 30.0%
TCTGAACTTAGGATCATATT+CGG - Chr7:9610421-9610440 MsG0780036548.01.T01:CDS 30.0%
TGACATCAATGCTTTGTATT+CGG - Chr7:9609944-9609963 MsG0780036548.01.T01:CDS 30.0%
TGGTTTCAAAGATCAAAAGA+TGG - Chr7:9609692-9609711 MsG0780036548.01.T01:intron 30.0%
TGTTCATTCTTGAAATGGAA+AGG - Chr7:9609629-9609648 MsG0780036548.01.T01:CDS 30.0%
TTCCATTCTCAACTTTCTTA+AGG - Chr7:9610516-9610535 MsG0780036548.01.T01:intron 30.0%
! ATTTTGCAGCTTCTGAATTT+TGG - Chr7:9609837-9609856 MsG0780036548.01.T01:CDS 30.0%
! CAAAGATCAAAAGATGGATT+GGG - Chr7:9609698-9609717 MsG0780036548.01.T01:intron 30.0%
!! AAGAGTATAAGTTTTTGCAG+AGG - Chr7:9609261-9609280 MsG0780036548.01.T01:CDS 30.0%
!! GGCTTTGAAAATCTTTGTTA+GGG - Chr7:9609719-9609738 MsG0780036548.01.T01:intron 30.0%
!!! TTTTGAGACAGAATTTGAAC+CGG + Chr7:9610560-9610579 None:intergenic 30.0%
!!! TTTTGGTGATGATTCATTTG+AGG - Chr7:9609429-9609448 MsG0780036548.01.T01:CDS 30.0%
AAATACTCAGACGTTTCTTC+AGG + Chr7:9609173-9609192 None:intergenic 35.0%
ACAAAACAAGCTTGACTAAC+AGG + Chr7:9609798-9609817 None:intergenic 35.0%
ACATGGCTGAAAAGGTTAAA+GGG - Chr7:9610398-9610417 MsG0780036548.01.T01:CDS 35.0%
AGGAAGATCAATCGATGATT+TGG - Chr7:9609138-9609157 MsG0780036548.01.T01:CDS 35.0%
ATATTGATCGAGAAGTTGGA+AGG - Chr7:9609215-9609234 MsG0780036548.01.T01:CDS 35.0%
ATTCATACATATCTCGCCAA+TGG + Chr7:9610113-9610132 None:intergenic 35.0%
CAAGCTTATAGGACATTTGT+TGG - Chr7:9610712-9610731 MsG0780036548.01.T01:CDS 35.0%
CTCAACTTTCTTAAGGATGA+AGG - Chr7:9610523-9610542 MsG0780036548.01.T01:intron 35.0%
GATGTCTTGAAAATGGAATG+GGG - Chr7:9609664-9609683 MsG0780036548.01.T01:intron 35.0%
GGAAGATCAATCGATGATTT+GGG - Chr7:9609139-9609158 MsG0780036548.01.T01:CDS 35.0%
GGAGAAAATAATGAAATGGG+AGG - Chr7:9609118-9609137 MsG0780036548.01.T01:CDS 35.0%
TACATGGCTGAAAAGGTTAA+AGG - Chr7:9610397-9610416 MsG0780036548.01.T01:CDS 35.0%
TCTGAAAGATCAAGAAGAAG+AGG - Chr7:9610177-9610196 MsG0780036548.01.T01:CDS 35.0%
TTGGCTTCTGTTATCATCTT+CGG + Chr7:9610239-9610258 None:intergenic 35.0%
TTTATCTTGCAAGTGAAAGG+TGG - Chr7:9609742-9609761 MsG0780036548.01.T01:intron 35.0%
TTTGGTGAAGCTATGTCTAT+TGG - Chr7:9609855-9609874 MsG0780036548.01.T01:CDS 35.0%
! CAATCGATGATTTGGGATTT+GGG - Chr7:9609146-9609165 MsG0780036548.01.T01:CDS 35.0%
! CTTATAGGACATTTGTTGGA+AGG - Chr7:9610716-9610735 MsG0780036548.01.T01:CDS 35.0%
! GAAACTTCCAGTTGTGTTTT+CGG + Chr7:9610459-9610478 None:intergenic 35.0%
! GGGAATTCTTTTGTCTCTTT+TGG - Chr7:9609412-9609431 MsG0780036548.01.T01:CDS 35.0%
! TCAATCGATGATTTGGGATT+TGG - Chr7:9609145-9609164 MsG0780036548.01.T01:CDS 35.0%
! TGGCTTAGTGACCAAATTTT+CGG - Chr7:9609762-9609781 MsG0780036548.01.T01:intron 35.0%
! TTTGAGACAGAATTTGAACC+GGG + Chr7:9610559-9610578 None:intergenic 35.0%
!! GAATACAAAGCATTGATGTC+AGG + Chr7:9609945-9609964 None:intergenic 35.0%
!! GGGCTTTGAAAATCTTTGTT+AGG - Chr7:9609718-9609737 MsG0780036548.01.T01:intron 35.0%
AAGTTACGAAGCTTCTACCT+CGG - Chr7:9610595-9610614 MsG0780036548.01.T01:CDS 40.0%
AATGGATCCGAAAACACAAC+TGG - Chr7:9610449-9610468 MsG0780036548.01.T01:CDS 40.0%
AGGTTAAAGGGTCTGAACTT+AGG - Chr7:9610410-9610429 MsG0780036548.01.T01:CDS 40.0%
ATACAAAGTGAGAAGGAGGA+GGG - Chr7:9608990-9609009 MsG0780036548.01.T01:CDS 40.0%
ATCAATGACATGCTCTTCAG+TGG + Chr7:9609485-9609504 None:intergenic 40.0%
ATTCAGTGCTTCGCTGTAAT+CGG + Chr7:9610152-9610171 None:intergenic 40.0%
CCAAGACTGAAGCAAATGAT+AGG + Chr7:9610300-9610319 None:intergenic 40.0%
CCTACATTACATGGCTGAAA+AGG - Chr7:9610390-9610409 MsG0780036548.01.T01:CDS 40.0%
CCTATCATTTGCTTCAGTCT+TGG - Chr7:9610297-9610316 MsG0780036548.01.T01:CDS 40.0%
GAACATACAAAGTGAGAAGG+AGG - Chr7:9608986-9609005 MsG0780036548.01.T01:CDS 40.0%
GAGACATACTCAGGTTCAAA+AGG + Chr7:9609361-9609380 None:intergenic 40.0%
GGAGGATGATATAGATAAGG+AGG - Chr7:9609031-9609050 MsG0780036548.01.T01:CDS 40.0%
GGCTTATAGTGTTCTTCAGA+CGG - Chr7:9609282-9609301 MsG0780036548.01.T01:CDS 40.0%
GGGTTTATCTTGCAAGTGAA+AGG - Chr7:9609739-9609758 MsG0780036548.01.T01:intron 40.0%
GTTCAAAAGGTTGCCTATTC+TGG + Chr7:9609348-9609367 None:intergenic 40.0%
TGAAATACGAGAGAGCTAGT+TGG - Chr7:9610491-9610510 MsG0780036548.01.T01:intron 40.0%
TGATATAGATAAGGAGGACG+AGG - Chr7:9609037-9609056 MsG0780036548.01.T01:CDS 40.0%
TTCGTATCAATTTCTCGGGT+TGG + Chr7:9609887-9609906 None:intergenic 40.0%
TTTACAGGATTCAAACGGCT+TGG - Chr7:9610629-9610648 MsG0780036548.01.T01:CDS 40.0%
! AGTGACCAAATTTTCGGAGA+AGG - Chr7:9609768-9609787 MsG0780036548.01.T01:CDS 40.0%
! CCTTTTCAGCCATGTAATGT+AGG + Chr7:9610393-9610412 None:intergenic 40.0%
! GAAAATGGAATGGGGTACTT+TGG - Chr7:9609672-9609691 MsG0780036548.01.T01:intron 40.0%
! TAAGGCATCCCTTCTAACAA+TGG + Chr7:9609599-9609618 None:intergenic 40.0%
!! ACAACGACTTGGTTTGATTC+AGG - Chr7:9609097-9609116 MsG0780036548.01.T01:CDS 40.0%
!! GGTGTTATTGAACAACGACT+TGG - Chr7:9609086-9609105 MsG0780036548.01.T01:CDS 40.0%
AGCGAGGAAGATGTTGTTGA+TGG - Chr7:9609391-9609410 MsG0780036548.01.T01:CDS 45.0%
AGTCTTGGAGAACAATCTCG+AGG - Chr7:9610312-9610331 MsG0780036548.01.T01:CDS 45.0%
CAATGCTTTGTATTCGGACG+AGG - Chr7:9609950-9609969 MsG0780036548.01.T01:CDS 45.0%
CATACAAAGTGAGAAGGAGG+AGG - Chr7:9608989-9609008 MsG0780036548.01.T01:CDS 45.0%
CTGTTATCATCTTCGGTACC+CGG + Chr7:9610232-9610251 None:intergenic 45.0%
GAAATCTACCAGGAGATGCT+TGG + Chr7:9610258-9610277 None:intergenic 45.0%
GATCGAAACGAGACATACTC+AGG + Chr7:9609370-9609389 None:intergenic 45.0%
GCAACCTGCTTATCCAGAAT+AGG - Chr7:9609332-9609351 MsG0780036548.01.T01:CDS 45.0%
GCGAGGAAGATGTTGTTGAT+GGG - Chr7:9609392-9609411 MsG0780036548.01.T01:CDS 45.0%
GCGCATATTGATCGAGAAGT+TGG - Chr7:9609211-9609230 MsG0780036548.01.T01:CDS 45.0%
GGATCATATTCGGAGACGAA+TGG - Chr7:9610431-9610450 MsG0780036548.01.T01:CDS 45.0%
GTTCGCCTTCTCCGAAAATT+TGG + Chr7:9609776-9609795 None:intergenic 45.0%
GTTGCCTATTCTGGATAAGC+AGG + Chr7:9609339-9609358 None:intergenic 45.0%
TACAAAGTGAGAAGGAGGAG+GGG - Chr7:9608991-9609010 MsG0780036548.01.T01:CDS 45.0%
TATAGATAAGGAGGACGAGG+TGG - Chr7:9609040-9609059 MsG0780036548.01.T01:CDS 45.0%
TCAACAACGCCTTTAGTTGG+TGG - Chr7:9610077-9610096 MsG0780036548.01.T01:intron 45.0%
TCCTGGTAGATTTCCCTCAA+TGG - Chr7:9610264-9610283 MsG0780036548.01.T01:CDS 45.0%
TCGGCTTCGAGGATATTTAC+AGG - Chr7:9610614-9610633 MsG0780036548.01.T01:CDS 45.0%
TGTAAATATCCTCGAAGCCG+AGG + Chr7:9610615-9610634 None:intergenic 45.0%
TGTATCCCTCCACCAACTAA+AGG + Chr7:9610089-9610108 None:intergenic 45.0%
TTCAGCTTCGCGAAGATTTG+CGG - Chr7:9610665-9610684 MsG0780036548.01.T01:CDS 45.0%
TTCTTCAGACGGCTATGACA+CGG - Chr7:9609293-9609312 MsG0780036548.01.T01:CDS 45.0%
TTTGCGATACACCTGAGATC+AGG + Chr7:9609529-9609548 None:intergenic 45.0%
!! ATCAATTTCTCGGGTTGGTG+AGG + Chr7:9609882-9609901 None:intergenic 45.0%
!! CACGAGGTTCTGAACAGATT+GGG - Chr7:9609999-9610018 MsG0780036548.01.T01:CDS 45.0%
!! CCAACTAAAGGCGTTGTTGA+CGG + Chr7:9610077-9610096 None:intergenic 45.0%
AACAGAAGCCAAGCATCTCC+TGG - Chr7:9610247-9610266 MsG0780036548.01.T01:CDS 50.0%
AGAAGGAGGAGGGGAAGATA+GGG - Chr7:9609000-9609019 MsG0780036548.01.T01:CDS 50.0%
CAGCTGTGATTCCTGATCTC+AGG - Chr7:9609515-9609534 MsG0780036548.01.T01:CDS 50.0%
CCAATCTGTTCAGAACCTCG+TGG + Chr7:9610001-9610020 None:intergenic 50.0%
CCGTCAACAACGCCTTTAGT+TGG - Chr7:9610074-9610093 MsG0780036548.01.T01:intron 50.0%
CGTGTCAGGTGACGATGAAA+TGG + Chr7:9610206-9610225 None:intergenic 50.0%
CTGAGATCAGGAATCACAGC+TGG + Chr7:9609517-9609536 None:intergenic 50.0%
GAAGATAGGGAGGGAAAAGG+AGG - Chr7:9609013-9609032 MsG0780036548.01.T01:CDS 50.0%
GATGAAGGAATTCACGCTCC+CGG - Chr7:9610538-9610557 MsG0780036548.01.T01:intron 50.0%
GCCATTGAGGGAAATCTACC+AGG + Chr7:9610268-9610287 None:intergenic 50.0%
GCTTTGTATTCGGACGAGGT+TGG - Chr7:9609954-9609973 MsG0780036548.01.T01:CDS 50.0%
GGTTCACTTTGAATGCCACG+AGG - Chr7:9609983-9610002 MsG0780036548.01.T01:CDS 50.0%
GTAGATTTCCCTCAATGGCG+CGG - Chr7:9610269-9610288 MsG0780036548.01.T01:CDS 50.0%
GTGGCATTCAAAGTGAACCG+AGG + Chr7:9609982-9610001 None:intergenic 50.0%
TCTTCGCGAAGCTGAACATC+TGG + Chr7:9610661-9610680 None:intergenic 50.0%
TGGTGGAGGGATACATCCAT+TGG - Chr7:9610094-9610113 MsG0780036548.01.T01:intron 50.0%
!! ACAACGCCTTTAGTTGGTGG+AGG - Chr7:9610080-9610099 MsG0780036548.01.T01:intron 50.0%
!! CAACGCCTTTAGTTGGTGGA+GGG - Chr7:9610081-9610100 MsG0780036548.01.T01:intron 50.0%
!! CCACGAGGTTCTGAACAGAT+TGG - Chr7:9609998-9610017 MsG0780036548.01.T01:CDS 50.0%
AAGCTTCTACCTCGGCTTCG+AGG - Chr7:9610603-9610622 MsG0780036548.01.T01:CDS 55.0%
AGGAATTGCCGCGCCATTGA+GGG + Chr7:9610280-9610299 None:intergenic 55.0%
ATCGTCACCTGACACGAGTC+CGG - Chr7:9610210-9610229 MsG0780036548.01.T01:CDS 55.0%
GAGAAGGAGGAGGGGAAGAT+AGG - Chr7:9608999-9609018 MsG0780036548.01.T01:CDS 55.0%
GGGGAAGATAGGGAGGGAAA+AGG - Chr7:9609010-9609029 MsG0780036548.01.T01:CDS 55.0%
TAGGAATTGCCGCGCCATTG+AGG + Chr7:9610281-9610300 None:intergenic 55.0%
TGTCTCGTTTCGATCGAGCG+AGG - Chr7:9609375-9609394 MsG0780036548.01.T01:CDS 55.0%
! GAGGAGGAGGAAGAAGGTGT+TGG - Chr7:9609065-9609084 MsG0780036548.01.T01:CDS 55.0%
! TTCGGACGAGGTTGGTTCCT+CGG - Chr7:9609962-9609981 MsG0780036548.01.T01:CDS 55.0%
AGGAGGAGGGGAAGATAGGG+AGG - Chr7:9609003-9609022 MsG0780036548.01.T01:CDS 60.0%
GGAGGAGGGGAAGATAGGGA+GGG - Chr7:9609004-9609023 MsG0780036548.01.T01:CDS 60.0%
GTGGACGAGGAGGAGGAAGA+AGG - Chr7:9609059-9609078 MsG0780036548.01.T01:CDS 60.0%
TAAGGAGGACGAGGTGGACG+AGG - Chr7:9609046-9609065 MsG0780036548.01.T01:CDS 60.0%
TCGTCACCTGACACGAGTCC+GGG - Chr7:9610211-9610230 MsG0780036548.01.T01:CDS 60.0%
TCGGTACCCGGACTCGTGTC+AGG + Chr7:9610220-9610239 None:intergenic 65.0%
GGACGAGGTGGACGAGGAGG+AGG - Chr7:9609052-9609071 MsG0780036548.01.T01:CDS 70.0%
GGAGGACGAGGTGGACGAGG+AGG - Chr7:9609049-9609068 MsG0780036548.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 9608984 9610855 9608984 ID=MsG0780036548.01;Name=MsG0780036548.01
Chr7 mRNA 9608984 9610855 9608984 ID=MsG0780036548.01.T01;Parent=MsG0780036548.01;Name=MsG0780036548.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|4|0|532
Chr7 exon 9610575 9610855 9610575 ID=MsG0780036548.01.T01:exon:1880;Parent=MsG0780036548.01.T01
Chr7 exon 9610154 9610485 9610154 ID=MsG0780036548.01.T01:exon:1879;Parent=MsG0780036548.01.T01
Chr7 exon 9609764 9610052 9609764 ID=MsG0780036548.01.T01:exon:1878;Parent=MsG0780036548.01.T01
Chr7 exon 9608984 9609680 9608984 ID=MsG0780036548.01.T01:exon:1877;Parent=MsG0780036548.01.T01
Chr7 CDS 9610575 9610855 9610575 ID=MsG0780036548.01.T01:cds;Parent=MsG0780036548.01.T01
Chr7 CDS 9610154 9610485 9610154 ID=MsG0780036548.01.T01:cds;Parent=MsG0780036548.01.T01
Chr7 CDS 9609764 9610052 9609764 ID=MsG0780036548.01.T01:cds;Parent=MsG0780036548.01.T01
Chr7 CDS 9608984 9609680 9608984 ID=MsG0780036548.01.T01:cds;Parent=MsG0780036548.01.T01
Gene Sequence

>MsG0780036548.01.T01

ATGAACATACAAAGTGAGAAGGAGGAGGGGAAGATAGGGAGGGAAAAGGAGGATGATATAGATAAGGAGGACGAGGTGGACGAGGAGGAGGAAGAAGGTGTTGGTGTTATTGAACAACGACTTGGTTTGATTCAGGAGAAAATAATGAAATGGGAGGAAGATCAATCGATGATTTGGGATTTGGGACCTGAAGAAACGTCTGAGTATTTGAATGCAGCTAATGATGTGCGCATATTGATCGAGAAGTTGGAAGGTATGCATTTGAATAAAGAAGATCAAGAGCAACCTTTTGAACCTGAGTATGTCTCGTTTCGATCGAGCGAGGAAGATGTTGTTGATGGGAATTCTTTTGTCTCTTTTGGTGATGATTCATTTGAGGAATCTCTTCGAAGAGATAGTGTCAGTCGAGCCACTGAAGAGCATGTCATTGATTTAGTTCATCCAGCTGTGATTCCTGATCTCAGGTGTATCGCAAACTTGCTTTTTGCTTCAAATTATGCTCAAGAATGTTCACAAGCTTATACCATTGTTAGAAGGGATGCCTTAGATGAGTGTTTGTTCATTCTTGAAATGGAAAGGCTAAGTATTGAAGATGTCTTGAAAATGGAATGGGAAGGCGAACCTGTTAGTCAAGCTTGTTTTGTCGATGCATCAAAAGCTTCAATTTTGCAGCTTCTGAATTTTGGTGAAGCTATGTCTATTGGTCCTCACCAACCCGAGAAATTGATACGAATTCTCGACATGTATGAAGTTCTTGCAGATCTTATGCCTGACATCAATGCTTTGTATTCGGACGAGGTTGGTTCCTCGGTTCACTTTGAATGCCACGAGGTTCTGAACAGATTGGGAGATTGTGTAAAGAAAACATTTCTTGAATTCAAAAATGCTGTTGATTTGAATCCCGAAGCACTGAATCATCTTCTGAAAGATCAAGAAGAAGAGGATTCCATTTCATCGTCACCTGACACGAGTCCGGGTACCGAAGATGATAACAGAAGCCAAGCATCTCCTGGTAGATTTCCCTCAATGGCGCGGCAATTCCTATCATTTGCTTCAGTCTTGGAGAACAATCTCGAGGAGAAATCGAAGTTATACAAAGAGACTTCATTGCAGCACTTGTTCTTAATGAACAACCTACATTACATGGCTGAAAAGGTTAAAGGGTCTGAACTTAGGATCATATTCGGAGACGAATGGATCCGAAAACACAACTGGAAGTTTCAGCAGCACGCGATGAAATACGAGAGAGCTAGTTGGAGTTCCATTCTCAACTTTCTTAAGGATGAAGGAATTCACGCTCCCGGTTCAAATTCTGTCTCAAAAACTCTTCTAAAAGAGAAGTTACGAAGCTTCTACCTCGGCTTCGAGGATATTTACAGGATTCAAACGGCTTGGTCGATTCCAGATGTTCAGCTTCGCGAAGATTTGCGGATTTCTATATCGGTTAAAGTGATTCAAGCTTATAGGACATTTGTTGGAAGGAATAATAGTCATGTGAGTGATAAACATATTAGATACACTGCTGATGATTTAGAAAATTATCTTTTGGATTTCTTTGAAGGTTCTCAAAAGTTGTTGCAAAATCCTATTAGGAGATGA

Protein sequence

>MsG0780036548.01.T01

MNIQSEKEEGKIGREKEDDIDKEDEVDEEEEEGVGVIEQRLGLIQEKIMKWEEDQSMIWDLGPEETSEYLNAANDVRILIEKLEGMHLNKEDQEQPFEPEYVSFRSSEEDVVDGNSFVSFGDDSFEESLRRDSVSRATEEHVIDLVHPAVIPDLRCIANLLFASNYAQECSQAYTIVRRDALDECLFILEMERLSIEDVLKMEWEGEPVSQACFVDASKASILQLLNFGEAMSIGPHQPEKLIRILDMYEVLADLMPDINALYSDEVGSSVHFECHEVLNRLGDCVKKTFLEFKNAVDLNPEALNHLLKDQEEEDSISSSPDTSPGTEDDNRSQASPGRFPSMARQFLSFASVLENNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRIIFGDEWIRKHNWKFQQHAMKYERASWSSILNFLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTAWSIPDVQLREDLRISISVKVIQAYRTFVGRNNSHVSDKHIRYTADDLENYLLDFFEGSQKLLQNPIRR*