AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029198.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029198.01.T02 MTR_5g082620 92.889 225 6 1 10 224 351 575 6.63e-155 442
MsG0580029198.01.T02 MTR_3g070720 82.222 225 30 1 10 224 355 579 1.97e-137 398
MsG0580029198.01.T02 MTR_3g069280 80.444 225 34 1 10 224 334 558 1.41e-133 387
MsG0580029198.01.T02 MTR_5g071010 70.222 225 57 1 10 224 356 580 1.26e-118 350
MsG0580029198.01.T02 MTR_5g082590 67.249 229 65 1 6 224 340 568 1.39e-111 332
MsG0580029198.01.T02 MTR_5g082580 59.389 229 83 1 7 225 366 594 1.54e-97 296
MsG0580029198.01.T02 MTR_3g070560 59.471 227 81 2 7 223 175 400 2.78e-95 285
MsG0580029198.01.T02 MTR_3g070710 59.912 227 80 2 7 223 347 572 9.56e-95 289
MsG0580029198.01.T02 MTR_3g070560 59.471 227 81 2 7 223 348 573 1.79e-93 285
MsG0580029198.01.T02 MTR_3g070720 88.028 142 17 0 10 151 355 496 6.39e-91 276
MsG0580029198.01.T02 MTR_5g071040 58.222 225 80 3 10 224 339 559 1.27e-86 267
MsG0580029198.01.T02 MTR_3g070720 85.965 114 16 0 10 123 355 468 1.90e-66 213
MsG0580029198.01.T02 MTR_3g070720 87.097 62 8 0 10 71 355 416 3.16e-30 116
MsG0580029198.01.T01 MTR_5g082620 93.392 227 1 1 1 227 1 213 2.27e-150 432
MsG0580029198.01.T01 MTR_5g082620 93.548 31 2 0 227 257 295 325 1.42e-11 64.3
MsG0580029198.01.T01 MTR_3g070720 70.742 229 47 4 3 227 7 219 1.26e-102 305
MsG0580029198.01.T01 MTR_3g070720 70.742 229 47 4 3 227 7 219 1.66e-101 304
MsG0580029198.01.T01 MTR_3g070720 70.742 229 47 4 3 227 7 219 2.89e-101 304
MsG0580029198.01.T01 MTR_3g070720 70.742 229 47 4 3 227 7 219 5.24e-100 303
MsG0580029198.01.T01 MTR_3g069280 66.981 212 47 4 17 227 7 196 2.64e-81 254
MsG0580029198.01.T01 MTR_5g071010 55.411 231 80 4 5 227 3 218 2.11e-79 250
MsG0580029198.01.T01 MTR_5g082590 52.340 235 83 5 24 244 19 238 1.42e-72 232
MsG0580029198.01.T01 MTR_5g071040 50.000 230 92 5 3 227 17 228 6.93e-70 225
MsG0580029198.01.T01 MTR_5g082580 44.017 234 104 3 6 227 11 229 8.57e-58 194
MsG0580029198.01.T01 MTR_3g070710 44.196 224 99 5 14 226 15 223 3.91e-53 181
MsG0580029198.01.T01 MTR_3g070560 44.186 215 109 3 15 227 15 220 2.10e-51 177
MsG0580029198.01.T01 MTR_3g070560 67.391 46 15 0 182 227 2 47 1.25e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029198.01.T02 AT3G08510 74.667 225 47 1 10 224 343 567 2.52e-127 372
MsG0580029198.01.T02 AT3G08510 74.667 225 47 1 10 224 343 567 2.52e-127 372
MsG0580029198.01.T02 AT3G55940 73.214 224 47 2 10 223 349 569 3.58e-120 353
MsG0580029198.01.T02 AT2G40116 68.444 225 61 1 10 224 375 599 1.36e-115 343
MsG0580029198.01.T02 AT5G58700 64.286 224 70 1 10 223 251 474 7.41e-105 311
MsG0580029198.01.T02 AT5G58700 64.286 224 70 1 10 223 359 582 1.09e-103 312
MsG0580029198.01.T02 AT5G58700 64.286 224 70 1 10 223 359 582 1.09e-103 312
MsG0580029198.01.T02 AT3G08510 66.977 215 52 1 10 224 343 538 1.01e-101 305
MsG0580029198.01.T02 AT3G08510 66.977 215 52 1 10 224 343 538 1.01e-101 305
MsG0580029198.01.T02 AT5G58690 60.699 229 80 1 6 224 317 545 2.27e-100 302
MsG0580029198.01.T02 AT5G58690 60.699 229 80 1 6 224 336 564 2.94e-100 302
MsG0580029198.01.T02 AT5G58690 60.699 229 80 1 6 224 336 564 2.94e-100 302
MsG0580029198.01.T02 AT5G58670 59.111 225 81 2 11 224 321 545 1.16e-96 293
MsG0580029198.01.T02 AT4G38530 55.804 224 85 3 11 223 323 543 2.42e-88 271
MsG0580029198.01.T02 AT3G47290 47.805 205 95 3 29 223 314 516 2.11e-58 193
MsG0580029198.01.T02 AT3G47220 48.804 209 94 6 26 223 310 516 6.59e-58 191
MsG0580029198.01.T02 AT3G47290 46.667 210 100 3 29 228 314 521 8.59e-58 192
MsG0580029198.01.T01 AT3G08510 61.674 227 71 2 1 227 1 211 9.55e-98 296
MsG0580029198.01.T01 AT3G08510 61.674 227 71 2 1 227 1 211 9.55e-98 296
MsG0580029198.01.T01 AT3G08510 61.674 227 71 2 1 227 1 211 2.41e-97 296
MsG0580029198.01.T01 AT3G08510 61.674 227 71 2 1 227 1 211 2.41e-97 296
MsG0580029198.01.T01 AT3G55940 61.233 227 72 2 1 227 1 211 3.16e-94 288
MsG0580029198.01.T01 AT5G58690 47.170 265 109 8 5 258 7 251 2.21e-69 224
MsG0580029198.01.T01 AT5G58690 47.170 265 109 8 5 258 7 251 2.21e-69 224
MsG0580029198.01.T01 AT5G58690 49.593 246 93 8 24 258 7 232 1.65e-66 216
MsG0580029198.01.T01 AT4G38530 48.899 227 98 3 4 227 3 214 6.70e-64 209
MsG0580029198.01.T01 AT5G58670 49.123 228 97 3 3 227 2 213 8.22e-64 209
MsG0580029198.01.T01 AT2G40116 58.757 177 53 3 56 227 84 245 1.31e-62 207
MsG0580029198.01.T01 AT5G58700 45.490 255 102 9 5 244 9 241 1.11e-60 201
MsG0580029198.01.T01 AT5G58700 45.490 255 102 9 5 244 9 241 1.11e-60 201
MsG0580029198.01.T01 AT5G58700 61.194 134 42 3 117 244 4 133 8.67e-48 165
MsG0580029198.01.T01 AT3G47290 37.168 226 111 9 14 227 5 211 2.45e-29 116
MsG0580029198.01.T01 AT3G47290 37.168 226 111 9 14 227 5 211 2.47e-29 115
MsG0580029198.01.T01 AT3G47220 34.934 229 118 9 13 227 5 216 9.89e-26 105

Find 69 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCAGTATATATGAAATAA+TGG 0.291133 5:-93555071 None:intergenic
CCAAACATGCTTACCTGTTT+CGG 0.306660 5:+93558412 MsG0580029198.01.T01:three_prime_UTR
CAAGGTACTCCTTAGGTGTT+TGG 0.315969 5:-93556145 None:intergenic
TCCCATTATTTCATATATAC+TGG 0.316971 5:+93555069 MsG0580029198.01.T01:CDS
TGAGTTCCCGCTTACTGTTC+CGG 0.319955 5:+93558325 MsG0580029198.01.T01:three_prime_UTR
CCGAAACAGGTAAGCATGTT+TGG 0.351920 5:-93558412 None:intergenic
GAGTTGTATTATCTCCCTTC+TGG 0.360084 5:-93558472 None:intergenic
GATAATGTTGATGTTCTTCA+TGG 0.363896 5:+93555213 MsG0580029198.01.T01:CDS
TAGATGGTTACTTCAACATT+TGG 0.368286 5:+93556040 MsG0580029198.01.T01:intron
TTAGTCTCGTACCTTGTAAT+CGG 0.375379 5:-93556276 None:intergenic
ATGTCCGAGAAAGATGATTT+TGG 0.376271 5:+93558386 MsG0580029198.01.T01:three_prime_UTR
ACAAGGCAATAGAGGATAAC+TGG 0.377060 5:+93558279 MsG0580029198.01.T01:three_prime_UTR
GTCGCTGCTCAGCTGATTCC+CGG 0.383750 5:-93555109 None:intergenic
GGTCACAATTCCTATCTAAC+CGG 0.390542 5:+93555090 MsG0580029198.01.T01:CDS
CTCTGCAACGCTTTCACGAT+TGG 0.394778 5:-93555144 None:intergenic
TCCTTCAAGCTTTCTGAGCC+AGG 0.395536 5:-93556079 None:intergenic
GCCACCAAAATCATCTTTCT+CGG 0.396908 5:-93558390 None:intergenic
TCACTGCACGGAAAGGCTTC+AGG 0.402037 5:+93556200 MsG0580029198.01.T01:intron
TTTGTCTCAAGGTACTCCTT+AGG 0.404254 5:-93556152 None:intergenic
GAGATCCCGAGCTTCAAGTT+AGG 0.417679 5:+93556245 MsG0580029198.01.T01:intron
CCACTCCTTAGCTCCGAAAC+AGG 0.428640 5:-93558425 None:intergenic
CAGCTGATTCCCGGTTAGAT+AGG 0.433100 5:-93555100 None:intergenic
ACCAGTATATATGAAATAAT+GGG 0.446982 5:-93555070 None:intergenic
AATAATGTGTTTGTGCTGTA+AGG 0.459015 5:+93558652 MsG0580029198.01.T01:three_prime_UTR
AAGAACATCAACATTATCCT+TGG 0.475267 5:-93555208 None:intergenic
ACATGGTGAACTATATGTAT+TGG 0.486941 5:+93554405 MsG0580029198.01.T01:CDS
ACCTGGCTCAGAAAGCTTGA+AGG 0.492584 5:+93556078 MsG0580029198.01.T01:intron
AAGCGTTGCAGAGAGGTGTA+AGG 0.494457 5:+93555154 MsG0580029198.01.T01:CDS
ACATTATCCTTGGATGCATT+AGG 0.497632 5:-93555198 None:intergenic
ATGTCATATCATGGTGCACC+TGG 0.500890 5:-93555038 None:intergenic
TTATATTTGTTTAAGGGTGA+AGG 0.501398 5:+93554379 MsG0580029198.01.T01:intron
AGGATAACTGGCTGCCTACA+TGG 0.502775 5:+93558291 MsG0580029198.01.T01:three_prime_UTR
GCTTACCTGTTTCGGAGCTA+AGG 0.504467 5:+93558420 MsG0580029198.01.T01:three_prime_UTR
CGTGAACTTCTATACGAAGA+AGG 0.506720 5:-93558355 None:intergenic
CCTTGAGACAAAAGAAGTAA+AGG 0.507809 5:+93556163 MsG0580029198.01.T01:intron
AGGTTTGTTATCCGATTACA+AGG 0.508087 5:+93556265 MsG0580029198.01.T01:intron
ACAAACCTAACTTGAAGCTC+GGG 0.512099 5:-93556250 None:intergenic
AGGTGTAAGGGTAATTGAGT+TGG 0.519469 5:+93555167 MsG0580029198.01.T01:CDS
ATACGAAGAAGGGCTAGTTC+CGG 0.521787 5:-93558344 None:intergenic
TTCAGGCGACGATGAAGCGT+GGG 0.524653 5:+93556217 MsG0580029198.01.T01:intron
AACAAACCTAACTTGAAGCT+CGG 0.526863 5:-93556251 None:intergenic
TTTAAGGGTGAAGGTTAACA+TGG 0.539671 5:+93554388 MsG0580029198.01.T01:intron
AGTTTGTATGTTGTAGATGA+AGG 0.547849 5:+93558603 MsG0580029198.01.T01:three_prime_UTR
AGTTTCTCTGCATAGCCAGA+AGG 0.553914 5:+93558457 MsG0580029198.01.T01:three_prime_UTR
GTTTCTCTGCATAGCCAGAA+GGG 0.554251 5:+93558458 MsG0580029198.01.T01:three_prime_UTR
ACAAAGGTAATGTCATATCA+TGG 0.560404 5:-93555047 None:intergenic
ATGTTGATGTTCTTCATGGA+AGG 0.566931 5:+93555217 MsG0580029198.01.T01:CDS
CTTGTGGCCTAATGCATCCA+AGG 0.569316 5:+93555191 MsG0580029198.01.T01:CDS
GGATGATTCACTGCACGGAA+AGG 0.571504 5:+93556193 MsG0580029198.01.T01:intron
CTAGTTCCGGAACAGTAAGC+GGG 0.572544 5:-93558331 None:intergenic
TATATGAAATAATGGGACAA+AGG 0.576354 5:-93555063 None:intergenic
CTTCAGGCGACGATGAAGCG+TGG 0.578988 5:+93556216 MsG0580029198.01.T01:intron
GGAGACATACTATTTGTACC+TGG 0.581909 5:+93556061 MsG0580029198.01.T01:intron
TGTATGTTGTAGATGAAGGA+TGG 0.600989 5:+93558607 MsG0580029198.01.T01:three_prime_UTR
TCAAATACCTCGTTCCATGT+AGG 0.605540 5:-93558305 None:intergenic
GTACAGTCATTAAGATGTGT+CGG 0.610664 5:+93558570 MsG0580029198.01.T01:three_prime_UTR
GCTAGTTCCGGAACAGTAAG+CGG 0.611031 5:-93558332 None:intergenic
ATATATCAACCAAACACCTA+AGG 0.612549 5:+93556136 MsG0580029198.01.T01:intron
AAAGAGGATGATTCACTGCA+CGG 0.615717 5:+93556188 MsG0580029198.01.T01:intron
GGGTAATTGAGTTGGACTTG+TGG 0.619450 5:+93555175 MsG0580029198.01.T01:CDS
AGCGTTGCAGAGAGGTGTAA+GGG 0.624722 5:+93555155 MsG0580029198.01.T01:CDS
CCTGTTTCGGAGCTAAGGAG+TGG 0.625863 5:+93558425 MsG0580029198.01.T01:three_prime_UTR
GTGAACTTCTATACGAAGAA+GGG 0.630679 5:-93558354 None:intergenic
TCAGGCGACGATGAAGCGTG+GGG 0.637108 5:+93556218 MsG0580029198.01.T01:intron
GTCACAATTCCTATCTAACC+GGG 0.642865 5:+93555091 MsG0580029198.01.T01:CDS
CTGGCTGCCTACATGGAACG+AGG 0.693778 5:+93558298 MsG0580029198.01.T01:three_prime_UTR
CAGGCGACGATGAAGCGTGG+GGG 0.695861 5:+93556219 MsG0580029198.01.T01:intron
ATCGTGAAAGCGTTGCAGAG+AGG 0.719532 5:+93555147 MsG0580029198.01.T01:CDS
CTATATGTATTGGTCCATCG+CGG 0.778695 5:+93554415 MsG0580029198.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTATTAAAGCAA+TGG - Chr5:93554456-93554475 None:intergenic 10.0%
!! ACAATAATAATTCATATACA+TGG + Chr5:93558729-93558748 MsG0580029198.01.T01:three_prime_UTR 15.0%
!! ATAGTATAATGAAAAAAACA+AGG + Chr5:93558262-93558281 MsG0580029198.01.T01:three_prime_UTR 15.0%
!! CATTCATTATATTTGTTTAA+GGG + Chr5:93554373-93554392 MsG0580029198.01.T01:intron 15.0%
!! TCATTCATTATATTTGTTTA+AGG + Chr5:93554372-93554391 MsG0580029198.01.T01:intron 15.0%
!!! ATAATTTTGACGAAATTAAA+AGG + Chr5:93556852-93556871 MsG0580029198.01.T01:intron 15.0%
!!! ATTATGTCTAAATTTTTAGA+TGG + Chr5:93556024-93556043 MsG0580029198.01.T01:intron 15.0%
!!! ATTTTCAAGAAAATAATTTC+TGG - Chr5:93555510-93555529 None:intergenic 15.0%
!!! GATACTATTTTTCTAATATT+CGG + Chr5:93556881-93556900 MsG0580029198.01.T01:intron 15.0%
!!! GTTTTTTCTGTTTTTTATTT+CGG + Chr5:93554541-93554560 MsG0580029198.01.T01:intron 15.0%
!!! TTGATTTGATATTTTAATAC+AGG + Chr5:93558216-93558235 MsG0580029198.01.T01:intron 15.0%
!!! TTTACATTTTTTTAATCTCT+AGG + Chr5:93555544-93555563 MsG0580029198.01.T01:intron 15.0%
!!! TTTTTTCTGTTTTTTATTTC+GGG + Chr5:93554542-93554561 MsG0580029198.01.T01:intron 15.0%
!! AAATTGTTTATAAGCTATTC+TGG - Chr5:93558182-93558201 None:intergenic 20.0%
!! ACCAGTATATATGAAATAAT+GGG - Chr5:93555073-93555092 None:intergenic 20.0%
!! ATCATTATCAAGAAAATAGA+AGG - Chr5:93555288-93555307 None:intergenic 20.0%
!! CAAATTATAATCCCTTAATT+GGG + Chr5:93557193-93557212 MsG0580029198.01.T01:three_prime_UTR 20.0%
!! CATATAAATTTCCATCTTTA+GGG + Chr5:93556349-93556368 MsG0580029198.01.T01:intron 20.0%
!! CATCTAAATTCTTTATATTG+TGG - Chr5:93554620-93554639 None:intergenic 20.0%
!! GATGTATTTAATGTAGAATT+CGG - Chr5:93553898-93553917 None:intergenic 20.0%
!! GATGTATTTGATTCAAAATT+TGG - Chr5:93554254-93554273 None:intergenic 20.0%
!! TAGCATAATATCAAAATTTG+CGG + Chr5:93554697-93554716 MsG0580029198.01.T01:intron 20.0%
!! TATTGAAGTGCAAATAAAAT+TGG - Chr5:93556303-93556322 None:intergenic 20.0%
!! TCAAATTATAATCCCTTAAT+TGG + Chr5:93557192-93557211 MsG0580029198.01.T01:three_prime_UTR 20.0%
!! TCATTATCAAGAAAATAGAA+GGG - Chr5:93555287-93555306 None:intergenic 20.0%
!! TCATTCATTTCAACATAAAA+AGG - Chr5:93556631-93556650 None:intergenic 20.0%
!! TGAAGTATGATATACTATAT+TGG - Chr5:93558009-93558028 None:intergenic 20.0%
!! TGAATATTAAATTAGACACT+TGG - Chr5:93557978-93557997 None:intergenic 20.0%
!! TTCAATTATATTGTTCTTTG+TGG + Chr5:93553654-93553673 MsG0580029198.01.T01:intron 20.0%
!!! AAAATAATTTCTGGATACAA+TGG - Chr5:93555501-93555520 None:intergenic 20.0%
!!! AGATTTTATCATATTAGATG+TGG - Chr5:93557710-93557729 None:intergenic 20.0%
!!! ATTGAAAATATTTTTCTGTG+TGG + Chr5:93555727-93555746 MsG0580029198.01.T01:intron 20.0%
!!! ATTTTTATTTACCTGATTGT+TGG + Chr5:93557104-93557123 MsG0580029198.01.T01:intron 20.0%
!!! GATTTTATCATATTAGATGT+GGG - Chr5:93557709-93557728 None:intergenic 20.0%
!!! GCACTTCAATAATAATTTTA+GGG + Chr5:93556312-93556331 MsG0580029198.01.T01:intron 20.0%
!!! TACAAGTACATATGTTTTTA+GGG - Chr5:93554351-93554370 None:intergenic 20.0%
!!! TCTATTATTGATAATGATGT+TGG + Chr5:93557727-93557746 MsG0580029198.01.T01:intron 20.0%
!!! TCTATTTTCTCAAATATTAC+TGG - Chr5:93557434-93557453 None:intergenic 20.0%
!!! TGCACTTCAATAATAATTTT+AGG + Chr5:93556311-93556330 MsG0580029198.01.T01:intron 20.0%
!!! TTGATATTTTAATACAGGTT+GGG + Chr5:93558221-93558240 MsG0580029198.01.T01:intron 20.0%
!!! TTGTCTTTTATTGTCAATTT+AGG + Chr5:93553755-93553774 MsG0580029198.01.T01:intron 20.0%
!!! TTTATTGATTTTTTTGTACG+TGG - Chr5:93556741-93556760 None:intergenic 20.0%
!!! TTTCAATTAAGAATCTTTTG+AGG - Chr5:93553383-93553402 None:intergenic 20.0%
!!! TTTGATATTTTAATACAGGT+TGG + Chr5:93558220-93558239 MsG0580029198.01.T01:intron 20.0%
!!! TTTTCATTATACTATCACTA+GGG - Chr5:93558257-93558276 None:intergenic 20.0%
!!! TTTTTCATTATACTATCACT+AGG - Chr5:93558258-93558277 None:intergenic 20.0%
!!! TTTTTCTGTTTTTTATTTCG+GGG + Chr5:93554543-93554562 MsG0580029198.01.T01:intron 20.0%
!!! TTTTTGCTTATATTTTGCAA+TGG + Chr5:93554290-93554309 MsG0580029198.01.T01:intron 20.0%
! AAAAGAAGTAAAGGAAAAAG+AGG + Chr5:93556172-93556191 MsG0580029198.01.T01:intron 25.0%
! AAAATGAAAAAACACTGAAG+AGG - Chr5:93557271-93557290 None:intergenic 25.0%
! AAAGTAGTAGAATTTCAATC+AGG - Chr5:93556926-93556945 None:intergenic 25.0%
! AAATGAAAAAACACTGAAGA+GGG - Chr5:93557270-93557289 None:intergenic 25.0%
! AAGTAGTAGAATTTCAATCA+GGG - Chr5:93556925-93556944 None:intergenic 25.0%
! AATAGAAAATCATGATTGTC+AGG + Chr5:93555427-93555446 MsG0580029198.01.T01:intron 25.0%
! ACAAAAACTGAGAAAATGAA+AGG - Chr5:93553721-93553740 None:intergenic 25.0%
! AGCTAAACAAAATTGAGTAT+TGG - Chr5:93554151-93554170 None:intergenic 25.0%
! ATTATAAATCCTGCTCAAAA+AGG - Chr5:93557585-93557604 None:intergenic 25.0%
! CTCATAAATCATCATTACTA+AGG + Chr5:93554939-93554958 MsG0580029198.01.T01:intron 25.0%
! GACCAGTATATATGAAATAA+TGG - Chr5:93555074-93555093 None:intergenic 25.0%
! GCATATAAATTTCCATCTTT+AGG + Chr5:93556348-93556367 MsG0580029198.01.T01:intron 25.0%
! GGATATCAAATAGGAATTAT+AGG - Chr5:93556796-93556815 None:intergenic 25.0%
! GGTTGAATTGTACATAATTA+AGG - Chr5:93554865-93554884 None:intergenic 25.0%
! GTAAAAATGATATGCTGATA+TGG - Chr5:93555474-93555493 None:intergenic 25.0%
! GTATTGTATCACATTTATTG+TGG + Chr5:93556965-93556984 MsG0580029198.01.T01:intron 25.0%
! TAAATGTGATACAATACAAC+AGG - Chr5:93556962-93556981 None:intergenic 25.0%
! TAGTAATGATGATTTATGAG+CGG - Chr5:93554939-93554958 None:intergenic 25.0%
! TAGTTAACTGAAGTTGTATT+GGG + Chr5:93555704-93555723 MsG0580029198.01.T01:intron 25.0%
! TATATGCTAAGTGTATACTT+TGG + Chr5:93554315-93554334 MsG0580029198.01.T01:intron 25.0%
! TATGGAAATAAGCTGAAAAA+AGG - Chr5:93558153-93558172 None:intergenic 25.0%
! TCAATAAACGTTGATGTATT+TGG + Chr5:93554112-93554131 MsG0580029198.01.T01:intron 25.0%
! TCCCATTATTTCATATATAC+TGG + Chr5:93555069-93555088 MsG0580029198.01.T01:CDS 25.0%
! TGAGTTTAATGTTATTGTTG+AGG - Chr5:93553136-93553155 None:intergenic 25.0%
! TTAGTTAACTGAAGTTGTAT+TGG + Chr5:93555703-93555722 MsG0580029198.01.T01:intron 25.0%
! TTATATTTGTTTAAGGGTGA+AGG + Chr5:93554379-93554398 MsG0580029198.01.T01:intron 25.0%
! TTTGACGAAATTAAAAGGAA+CGG + Chr5:93556857-93556876 MsG0580029198.01.T01:intron 25.0%
!! AGTCACTTTCTTTAAGAAAT+GGG + Chr5:93554512-93554531 MsG0580029198.01.T01:intron 25.0%
!! CTACAAGTACATATGTTTTT+AGG - Chr5:93554352-93554371 None:intergenic 25.0%
!! GCTACAAATTCTAGTATTTT+CGG + Chr5:93555335-93555354 MsG0580029198.01.T01:intron 25.0%
!! TAAAGAATATTTTCATGACG+AGG + Chr5:93556384-93556403 MsG0580029198.01.T01:CDS 25.0%
!! TATATGAAATAATGGGACAA+AGG - Chr5:93555066-93555085 None:intergenic 25.0%
!! TTGCTCTTTTATCTTCAATT+GGG + Chr5:93553532-93553551 MsG0580029198.01.T01:CDS 25.0%
!! TTTTTGCTTACATTTTGCAA+CGG + Chr5:93554173-93554192 MsG0580029198.01.T01:intron 25.0%
!!! AAAATGAAAGGCATTAAACA+AGG - Chr5:93553709-93553728 None:intergenic 25.0%
!!! ACAAGTACATATGTTTTTAG+GGG - Chr5:93554350-93554369 None:intergenic 25.0%
!!! ATATACCTAGTTCTAAATTG+TGG + Chr5:93554575-93554594 MsG0580029198.01.T01:intron 25.0%
!!! ATGATGATTGTGTTTTGTTT+TGG - Chr5:93553225-93553244 None:intergenic 25.0%
!!! ATTGTGTTTTGTTTTGGATT+TGG - Chr5:93553219-93553238 None:intergenic 25.0%
!!! CGGTTTGTTAATTAAAGTTA+TGG - Chr5:93554919-93554938 None:intergenic 25.0%
!!! TATCCCATAGTTCTAAATTA+TGG - Chr5:93554734-93554753 None:intergenic 25.0%
!!! TGAAATTCTACTACTTTTGT+TGG + Chr5:93556929-93556948 MsG0580029198.01.T01:intron 25.0%
!!! TTCTTTAAGAAATGGGATTT+TGG + Chr5:93554519-93554538 MsG0580029198.01.T01:intron 25.0%
AAGAACATCAACATTATCCT+TGG - Chr5:93555211-93555230 None:intergenic 30.0%
AATAATGTGTTTGTGCTGTA+AGG + Chr5:93558652-93558671 MsG0580029198.01.T01:three_prime_UTR 30.0%
AATGCGAAAAAAAAATGCAG+CGG - Chr5:93554676-93554695 None:intergenic 30.0%
ACAAAGGTAATGTCATATCA+TGG - Chr5:93555050-93555069 None:intergenic 30.0%
ACATGGTGAACTATATGTAT+TGG + Chr5:93554405-93554424 MsG0580029198.01.T01:CDS 30.0%
ACTATGGAGATAAGCTAAAA+CGG + Chr5:93555878-93555897 MsG0580029198.01.T01:intron 30.0%
AGTTTGTATGTTGTAGATGA+AGG + Chr5:93558603-93558622 MsG0580029198.01.T01:three_prime_UTR 30.0%
ATATATATCAAAGTGAGCCA+AGG + Chr5:93553974-93553993 MsG0580029198.01.T01:intron 30.0%
ATATATCAACCAAACACCTA+AGG + Chr5:93556136-93556155 MsG0580029198.01.T01:intron 30.0%
ATCATACTTCACTTGTTCTT+AGG + Chr5:93558018-93558037 MsG0580029198.01.T01:intron 30.0%
ATTATAATCCCTTAATTGGG+TGG + Chr5:93557196-93557215 MsG0580029198.01.T01:three_prime_UTR 30.0%
CAAAATACATCAACTTTCCT+TGG - Chr5:93553994-93554013 None:intergenic 30.0%
CAATTGAAGATAAAAGAGCA+AGG - Chr5:93553533-93553552 None:intergenic 30.0%
CAGAGTGAAATATGTGAAAT+GGG - Chr5:93556817-93556836 None:intergenic 30.0%
CATCACTTGATCTATCTAAT+AGG + Chr5:93557009-93557028 MsG0580029198.01.T01:intron 30.0%
CTATTAGATAGATCAAGTGA+TGG - Chr5:93557011-93557030 None:intergenic 30.0%
CTTGTACTACATAGTAATTC+AGG + Chr5:93553807-93553826 MsG0580029198.01.T01:intron 30.0%
GATAATGTTGATGTTCTTCA+TGG + Chr5:93555213-93555232 MsG0580029198.01.T01:CDS 30.0%
GATACAATACAACAGGAAAA+TGG - Chr5:93556955-93556974 None:intergenic 30.0%
GGCAATTAAACCTTATATTC+TGG - Chr5:93556451-93556470 None:intergenic 30.0%
GTTGACAAAAAAACATGACA+AGG - Chr5:93553616-93553635 None:intergenic 30.0%
TACTCAGAAGAATATTCTGA+GGG + Chr5:93557140-93557159 MsG0580029198.01.T01:three_prime_UTR 30.0%
TAGATGGTTACTTCAACATT+TGG + Chr5:93556040-93556059 MsG0580029198.01.T01:intron 30.0%
TCAAATAAGTCAATCTTGAC+AGG + Chr5:93555978-93555997 MsG0580029198.01.T01:intron 30.0%
TCTTAGGTGACTGTATATAT+GGG + Chr5:93558034-93558053 MsG0580029198.01.T01:intron 30.0%
TGAAAAAAACAAGGCAATAG+AGG + Chr5:93558271-93558290 MsG0580029198.01.T01:three_prime_UTR 30.0%
TGTGAAATGGGATATCAAAT+AGG - Chr5:93556805-93556824 None:intergenic 30.0%
TTAAATTAGACACTTGGATG+AGG - Chr5:93557972-93557991 None:intergenic 30.0%
TTACTCAGAAGAATATTCTG+AGG + Chr5:93557139-93557158 MsG0580029198.01.T01:three_prime_UTR 30.0%
TTCTTAGGTGACTGTATATA+TGG + Chr5:93558033-93558052 MsG0580029198.01.T01:intron 30.0%
TTGCAACAAAATTGCAATTG+CGG + Chr5:93554644-93554663 MsG0580029198.01.T01:intron 30.0%
TTTCAAGCATTTCCATAGAA+GGG + Chr5:93553455-93553474 MsG0580029198.01.T01:CDS 30.0%
! CAGTCACTTTCTTTAAGAAA+TGG + Chr5:93554511-93554530 MsG0580029198.01.T01:intron 30.0%
! CGACCATAATTTAGAACTAT+GGG + Chr5:93554728-93554747 MsG0580029198.01.T01:intron 30.0%
! CTAAAATATTTTGTCAGCAC+TGG - Chr5:93557348-93557367 None:intergenic 30.0%
! CTTGCTCTTTTATCTTCAAT+TGG + Chr5:93553531-93553550 MsG0580029198.01.T01:CDS 30.0%
! TTCTGAGTATTGTTCAAAGA+GGG - Chr5:93553337-93553356 None:intergenic 30.0%
! TTTCTGAGTATTGTTCAAAG+AGG - Chr5:93553338-93553357 None:intergenic 30.0%
! TTTGGATTTGGTTATGTTTG+TGG - Chr5:93553207-93553226 None:intergenic 30.0%
! TTTTTGTCAACTGACTGTAT+TGG + Chr5:93553625-93553644 MsG0580029198.01.T01:intron 30.0%
!! TTGAGTATTGGTTCAACATT+TGG - Chr5:93554139-93554158 None:intergenic 30.0%
!!! AAGAATCTTTTGAGGTTTGA+AGG - Chr5:93553375-93553394 None:intergenic 30.0%
!!! AAGTTAGTTTTCATTGTGCT+TGG + Chr5:93557757-93557776 MsG0580029198.01.T01:intron 30.0%
!!! ATCCTCTTTTTAAGTGATTC+AGG - Chr5:93556115-93556134 None:intergenic 30.0%
!!! TGTGTTTTTTGTTGTATTCC+AGG + Chr5:93555020-93555039 MsG0580029198.01.T01:intron 30.0%
!!! TTTTTAAGTGATTCAGGAGA+AGG - Chr5:93556109-93556128 None:intergenic 30.0%
AACAAACCTAACTTGAAGCT+CGG - Chr5:93556254-93556273 None:intergenic 35.0%
AAGTGAGCAACAACTTGAAA+AGG + Chr5:93556547-93556566 MsG0580029198.01.T01:three_prime_UTR 35.0%
AATATATGTGAGCAACACCA+TGG - Chr5:93556678-93556697 None:intergenic 35.0%
ACATTATCCTTGGATGCATT+AGG - Chr5:93555201-93555220 None:intergenic 35.0%
AGATAAGCTAAAACGGCTTA+TGG + Chr5:93555885-93555904 MsG0580029198.01.T01:intron 35.0%
ATATATGTGAGCAACACCAT+GGG - Chr5:93556677-93556696 None:intergenic 35.0%
ATGTGAGGTTAAGTTAACAC+TGG + Chr5:93557661-93557680 MsG0580029198.01.T01:intron 35.0%
ATGTTGATGTTCTTCATGGA+AGG + Chr5:93555217-93555236 MsG0580029198.01.T01:CDS 35.0%
ATTACTTCAACGAGGGTTTA+AGG + Chr5:93554893-93554912 MsG0580029198.01.T01:intron 35.0%
CAACTTCAGTTAACTAACCT+CGG - Chr5:93555700-93555719 None:intergenic 35.0%
CATACAGTGTTTGTTTATGC+TGG + Chr5:93553262-93553281 MsG0580029198.01.T01:CDS 35.0%
CCTTAAAACGCCAATGATTA+AGG - Chr5:93556712-93556731 None:intergenic 35.0%
CCTTGAGACAAAAGAAGTAA+AGG + Chr5:93556163-93556182 MsG0580029198.01.T01:intron 35.0%
CTATTGTTTGTGTGTTGTGT+TGG - Chr5:93553166-93553185 None:intergenic 35.0%
CTCATGGAAAAGAAATTGTC+AGG + Chr5:93556579-93556598 MsG0580029198.01.T01:three_prime_UTR 35.0%
CTCCTGAATCACTTAAAAAG+AGG + Chr5:93556110-93556129 MsG0580029198.01.T01:intron 35.0%
CTTACTACCTCCTTAATCAT+TGG + Chr5:93556699-93556718 MsG0580029198.01.T01:intron 35.0%
CTTACTCTTGCATAGAAATC+TGG - Chr5:93558112-93558131 None:intergenic 35.0%
GAACTATGGGATATACCATA+TGG + Chr5:93554741-93554760 MsG0580029198.01.T01:intron 35.0%
GCAGAGTGAAATATGTGAAA+TGG - Chr5:93556818-93556837 None:intergenic 35.0%
GGGCGATTAAAGTATAAAAG+TGG - Chr5:93555267-93555286 None:intergenic 35.0%
GTACAGTCATTAAGATGTGT+CGG + Chr5:93558570-93558589 MsG0580029198.01.T01:three_prime_UTR 35.0%
GTGAACTTCTATACGAAGAA+GGG - Chr5:93558357-93558376 None:intergenic 35.0%
GTGATAGTTGAAATATGAGC+CGG + Chr5:93557558-93557577 MsG0580029198.01.T01:intron 35.0%
GTTTAATTGCCATTCATGCT+GGG + Chr5:93556460-93556479 MsG0580029198.01.T01:intron 35.0%
GTTTCAAGCATTTCCATAGA+AGG + Chr5:93553454-93553473 MsG0580029198.01.T01:CDS 35.0%
TAAAACGCCAATGATTAAGG+AGG - Chr5:93556709-93556728 None:intergenic 35.0%
TAGATGCTTGAGGTCTATTA+AGG + Chr5:93555593-93555612 MsG0580029198.01.T01:CDS 35.0%
TATACCATATGGCATCACAT+TGG + Chr5:93554752-93554771 MsG0580029198.01.T01:intron 35.0%
TATGTACAATTCAACCCTCA+AGG + Chr5:93554869-93554888 MsG0580029198.01.T01:intron 35.0%
TCACTCTGCATAAATAGTCA+GGG + Chr5:93556829-93556848 MsG0580029198.01.T01:intron 35.0%
TCAGGGAAATAGAATACAGA+AGG - Chr5:93556908-93556927 None:intergenic 35.0%
TCGTTGAAGTAATACCTTGA+GGG - Chr5:93554886-93554905 None:intergenic 35.0%
TGTATGTTGTAGATGAAGGA+TGG + Chr5:93558607-93558626 MsG0580029198.01.T01:three_prime_UTR 35.0%
TTAGTCTCGTACCTTGTAAT+CGG - Chr5:93556279-93556298 None:intergenic 35.0%
TTATATTGTGGCTGCAATTG+TGG - Chr5:93554608-93554627 None:intergenic 35.0%
TTCAAGCATTTCCATAGAAG+GGG + Chr5:93553456-93553475 MsG0580029198.01.T01:CDS 35.0%
TTCACTCTGCATAAATAGTC+AGG + Chr5:93556828-93556847 MsG0580029198.01.T01:intron 35.0%
TTTAAGGGTGAAGGTTAACA+TGG + Chr5:93554388-93554407 MsG0580029198.01.T01:intron 35.0%
! AACTTTGATCTAAAGCGTCA+GGG + Chr5:93557499-93557518 MsG0580029198.01.T01:intron 35.0%
! ATGTCCGAGAAAGATGATTT+TGG + Chr5:93558386-93558405 MsG0580029198.01.T01:three_prime_UTR 35.0%
! ATTTTTGCTGCAATTCAACC+AGG - Chr5:93555315-93555334 None:intergenic 35.0%
! CCTTAATCATTGGCGTTTTA+AGG + Chr5:93556709-93556728 MsG0580029198.01.T01:intron 35.0%
! CCTTTACTTCTTTTGTCTCA+AGG - Chr5:93556166-93556185 None:intergenic 35.0%
! GAAGACTACTTTGAAGGTAA+GGG + Chr5:93557928-93557947 MsG0580029198.01.T01:intron 35.0%
! GCGACCATAATTTAGAACTA+TGG + Chr5:93554727-93554746 MsG0580029198.01.T01:intron 35.0%
! GTTCACACTTTACACACTTT+TGG + Chr5:93554809-93554828 MsG0580029198.01.T01:intron 35.0%
! TCAAGGTATTACTTCAACGA+GGG + Chr5:93554886-93554905 MsG0580029198.01.T01:intron 35.0%
! TGAAGACTACTTTGAAGGTA+AGG + Chr5:93557927-93557946 MsG0580029198.01.T01:intron 35.0%
! TTCACAGGTAACTTAGCTTT+AGG - Chr5:93557911-93557930 None:intergenic 35.0%
!! AGGTTTGTTATCCGATTACA+AGG + Chr5:93556265-93556284 MsG0580029198.01.T01:intron 35.0%
!! ATAGTAGTCTTATGAAGCAC+TGG + Chr5:93557374-93557393 MsG0580029198.01.T01:intron 35.0%
!! GAAAGGCATTAAACAAGGTA+CGG - Chr5:93553704-93553723 None:intergenic 35.0%
!! TCTTCTAGGGTTATTACAAC+CGG - Chr5:93555645-93555664 None:intergenic 35.0%
!! TTCTTGATAATGATGTCACC+TGG + Chr5:93555294-93555313 MsG0580029198.01.T01:intron 35.0%
!!! CTCTCTTTTTAGAGTGTGAA+AGG - Chr5:93553049-93553068 None:intergenic 35.0%
!!! GCTGTTTTTATAACCTAACC+TGG + Chr5:93555852-93555871 MsG0580029198.01.T01:intron 35.0%
!!! TTTTAGAGTGTGAAAGGTTG+AGG - Chr5:93553043-93553062 None:intergenic 35.0%
AAAATAGATCCGGAGAAAGG+AGG + Chr5:93556513-93556532 MsG0580029198.01.T01:three_prime_UTR 40.0%
AAAGAGGATGATTCACTGCA+CGG + Chr5:93556188-93556207 MsG0580029198.01.T01:intron 40.0%
AAAGCCAATGTGATGCCATA+TGG - Chr5:93554759-93554778 None:intergenic 40.0%
AAATCCTGCTCAAAAAGGAC+CGG - Chr5:93557580-93557599 None:intergenic 40.0%
AATGGTTGCATTCAACATGC+AGG + Chr5:93557233-93557252 MsG0580029198.01.T01:three_prime_UTR 40.0%
ACAAACCTAACTTGAAGCTC+GGG - Chr5:93556253-93556272 None:intergenic 40.0%
ACAAGGCAATAGAGGATAAC+TGG + Chr5:93558279-93558298 MsG0580029198.01.T01:three_prime_UTR 40.0%
ACCTGTGAAGACTACTTTGA+AGG + Chr5:93557922-93557941 MsG0580029198.01.T01:three_prime_UTR 40.0%
ACCTTCAAAGTAGTCTTCAC+AGG - Chr5:93557926-93557945 None:intergenic 40.0%
ACTCTTGCATAGAAATCTGG+AGG - Chr5:93558109-93558128 None:intergenic 40.0%
AGGTGTAAGGGTAATTGAGT+TGG + Chr5:93555167-93555186 MsG0580029198.01.T01:CDS 40.0%
ATTGTGCTTGGTTCCATTGT+AGG + Chr5:93557769-93557788 MsG0580029198.01.T01:intron 40.0%
CATAAGCACTTAGACACGTT+TGG - Chr5:93555945-93555964 None:intergenic 40.0%
CCAAACATGCTTACCTGTTT+CGG + Chr5:93558412-93558431 MsG0580029198.01.T01:three_prime_UTR 40.0%
CCAAACTGTTTCCCTAAAGA+TGG - Chr5:93556363-93556382 None:intergenic 40.0%
CCAGTCGTTAAGAGAAAATC+TGG - Chr5:93557866-93557885 None:intergenic 40.0%
CCATGAATCCACCCAATTAA+GGG - Chr5:93557207-93557226 None:intergenic 40.0%
CGTGAACTTCTATACGAAGA+AGG - Chr5:93558358-93558377 None:intergenic 40.0%
CTCAAAATAGATCCGGAGAA+AGG + Chr5:93556510-93556529 MsG0580029198.01.T01:three_prime_UTR 40.0%
CTCGTTGAAGTAATACCTTG+AGG - Chr5:93554887-93554906 None:intergenic 40.0%
CTGTATATATGGGAGAAGGA+TGG + Chr5:93558044-93558063 MsG0580029198.01.T01:three_prime_UTR 40.0%
GAAAAGGCTGCTATAACTCA+TGG + Chr5:93556563-93556582 MsG0580029198.01.T01:three_prime_UTR 40.0%
GAGTTGTATTATCTCCCTTC+TGG - Chr5:93558475-93558494 None:intergenic 40.0%
GCAGTCATATATGTCACTGT+TGG + Chr5:93557465-93557484 MsG0580029198.01.T01:intron 40.0%
GCCACCAAAATCATCTTTCT+CGG - Chr5:93558393-93558412 None:intergenic 40.0%
GGAGACATACTATTTGTACC+TGG + Chr5:93556061-93556080 MsG0580029198.01.T01:intron 40.0%
GGTCACAATTCCTATCTAAC+CGG + Chr5:93555090-93555109 MsG0580029198.01.T01:CDS 40.0%
GGTTAAGTTAACACTGGTAG+AGG + Chr5:93557667-93557686 MsG0580029198.01.T01:intron 40.0%
GGTTTAATTGCCATTCATGC+TGG + Chr5:93556459-93556478 MsG0580029198.01.T01:intron 40.0%
GTCACAATTCCTATCTAACC+GGG + Chr5:93555091-93555110 MsG0580029198.01.T01:CDS 40.0%
GTGACTGTATATATGGGAGA+AGG + Chr5:93558040-93558059 MsG0580029198.01.T01:three_prime_UTR 40.0%
GTTATTGTTGAGGTTGTTGC+TGG - Chr5:93553126-93553145 None:intergenic 40.0%
TAACCTAACCTGGAGAACTA+TGG + Chr5:93555862-93555881 MsG0580029198.01.T01:intron 40.0%
TATATGTCACTGTTGGACAC+TGG + Chr5:93557472-93557491 MsG0580029198.01.T01:intron 40.0%
TCAAATACCTCGTTCCATGT+AGG - Chr5:93558308-93558327 None:intergenic 40.0%
TCCATGAATCCACCCAATTA+AGG - Chr5:93557208-93557227 None:intergenic 40.0%
TGGAGTAAGATGGTCTTCTA+GGG - Chr5:93555658-93555677 None:intergenic 40.0%
TTGTGCTTGGTTCCATTGTA+GGG + Chr5:93557770-93557789 MsG0580029198.01.T01:intron 40.0%
! AAGCTATTCTGGAGAGCTTA+TGG - Chr5:93558171-93558190 None:intergenic 40.0%
! CAACTTTGATCTAAAGCGTC+AGG + Chr5:93557498-93557517 MsG0580029198.01.T01:intron 40.0%
! CATGGAATGTTTAGAGCCAA+TGG + Chr5:93557818-93557837 MsG0580029198.01.T01:three_prime_UTR 40.0%
! CCAGATTTTCTCTTAACGAC+TGG + Chr5:93557863-93557882 MsG0580029198.01.T01:three_prime_UTR 40.0%
! CCATCTTTAGGGAAACAGTT+TGG + Chr5:93556360-93556379 MsG0580029198.01.T01:intron 40.0%
! CTATATGTATTGGTCCATCG+CGG + Chr5:93554415-93554434 MsG0580029198.01.T01:CDS 40.0%
! CTCAAGGTATTACTTCAACG+AGG + Chr5:93554885-93554904 MsG0580029198.01.T01:intron 40.0%
! CTTGAAGATCTGGAGTAAGA+TGG - Chr5:93555668-93555687 None:intergenic 40.0%
! GAATGTTTAGAGCCAATGGA+GGG + Chr5:93557822-93557841 MsG0580029198.01.T01:three_prime_UTR 40.0%
! GTGGACCACAATTTAGAACT+AGG - Chr5:93554583-93554602 None:intergenic 40.0%
! TCCGAGAAAGATGATTTTGG+TGG + Chr5:93558389-93558408 MsG0580029198.01.T01:three_prime_UTR 40.0%
! TTTGTCTCAAGGTACTCCTT+AGG - Chr5:93556155-93556174 None:intergenic 40.0%
!! ATTCTGAGGGTGTTTCCAAA+AGG + Chr5:93557153-93557172 MsG0580029198.01.T01:three_prime_UTR 40.0%
!! CTAGTATTTTCGGTGCAATC+TGG + Chr5:93555345-93555364 MsG0580029198.01.T01:intron 40.0%
!! TTTTCTCTTAACGACTGGTC+CGG + Chr5:93557868-93557887 MsG0580029198.01.T01:three_prime_UTR 40.0%
!!! TATTTTTGAGTTCACCGCGA+TGG - Chr5:93554432-93554451 None:intergenic 40.0%
!!! TTTTTATTTCGGGGCATTGC+AGG + Chr5:93554552-93554571 MsG0580029198.01.T01:intron 40.0%
AACATAACCACACCCTCCAT+TGG - Chr5:93557837-93557856 None:intergenic 45.0%
AAGAGGGTCTTGATCTCTTG+TGG - Chr5:93553321-93553340 None:intergenic 45.0%
AAGCATCTAATGAGCTCCAC+AGG - Chr5:93555582-93555601 None:intergenic 45.0%
ACTTATACGCCTCCTTTCTC+CGG - Chr5:93556525-93556544 None:intergenic 45.0%
AGATCACTTTGGCTGATGCA+TGG + Chr5:93557800-93557819 MsG0580029198.01.T01:three_prime_UTR 45.0%
AGTTTCTCTGCATAGCCAGA+AGG + Chr5:93558457-93558476 MsG0580029198.01.T01:three_prime_UTR 45.0%
ATGTCATATCATGGTGCACC+TGG - Chr5:93555041-93555060 None:intergenic 45.0%
ATTCATGCTGGGAAGTCGAA+AGG + Chr5:93556471-93556490 MsG0580029198.01.T01:three_prime_UTR 45.0%
CCACGTAGCTCCAGAATATA+AGG + Chr5:93556438-93556457 MsG0580029198.01.T01:CDS 45.0%
CCGAAACAGGTAAGCATGTT+TGG - Chr5:93558415-93558434 None:intergenic 45.0%
CCTATAGCAGACCAACAATC+AGG - Chr5:93557118-93557137 None:intergenic 45.0%
CGCATGGCTCAAAATAGATC+CGG + Chr5:93556503-93556522 MsG0580029198.01.T01:three_prime_UTR 45.0%
CTATCTCTGACTCTATCCCA+TGG + Chr5:93556658-93556677 MsG0580029198.01.T01:intron 45.0%
CTGGAGTAAGATGGTCTTCT+AGG - Chr5:93555659-93555678 None:intergenic 45.0%
GACACGTTTGGAAGAGCTTA+TGG - Chr5:93555933-93555952 None:intergenic 45.0%
GCTTATCTCCATAGTTCTCC+AGG - Chr5:93555873-93555892 None:intergenic 45.0%
GGATCAAAGACCTCATTGTC+CGG - Chr5:93557890-93557909 None:intergenic 45.0%
GTGGATTCATGGAGCTCAAA+TGG + Chr5:93557215-93557234 MsG0580029198.01.T01:three_prime_UTR 45.0%
GTTTCTCTGCATAGCCAGAA+GGG + Chr5:93558458-93558477 MsG0580029198.01.T01:three_prime_UTR 45.0%
TAGAGTGTGAAAGGTTGAGG+TGG - Chr5:93553040-93553059 None:intergenic 45.0%
TCCAGATCTTCAAGCCAAAG+TGG + Chr5:93555674-93555693 MsG0580029198.01.T01:CDS 45.0%
TCTCCATAGTTCTCCAGGTT+AGG - Chr5:93555868-93555887 None:intergenic 45.0%
TGGAGCTCATTAGATGCTTG+AGG + Chr5:93555583-93555602 MsG0580029198.01.T01:CDS 45.0%
TGTGCTTGGTTCCATTGTAG+GGG + Chr5:93557771-93557790 MsG0580029198.01.T01:intron 45.0%
TTAACTAACCTCGGCCACTT+TGG - Chr5:93555691-93555710 None:intergenic 45.0%
TTCACGCAAGTTACGATGTG+AGG + Chr5:93557646-93557665 MsG0580029198.01.T01:intron 45.0%
TTGGTTCCATTGTAGGGGTA+TGG + Chr5:93557776-93557795 MsG0580029198.01.T01:intron 45.0%
TTTCGACTTCCCAGCATGAA+TGG - Chr5:93556472-93556491 None:intergenic 45.0%
! CAAGGTACTCCTTAGGTGTT+TGG - Chr5:93556148-93556167 None:intergenic 45.0%
! CCCTTAATTGGGTGGATTCA+TGG + Chr5:93557204-93557223 MsG0580029198.01.T01:three_prime_UTR 45.0%
! CCTGATTGTTGGTCTGCTAT+AGG + Chr5:93557115-93557134 MsG0580029198.01.T01:intron 45.0%
! GAGTCAATGCGAGTACCTTT+TGG - Chr5:93557171-93557190 None:intergenic 45.0%
! GGAATGTTTAGAGCCAATGG+AGG + Chr5:93557821-93557840 MsG0580029198.01.T01:three_prime_UTR 45.0%
! TAGGACATTGACTACTCCTG+TGG + Chr5:93555563-93555582 MsG0580029198.01.T01:intron 45.0%
! TGGTTCCATTGTAGGGGTAT+GGG + Chr5:93557777-93557796 MsG0580029198.01.T01:intron 45.0%
!! ATACGAAGAAGGGCTAGTTC+CGG - Chr5:93558347-93558366 None:intergenic 45.0%
!! CCTTATATTCTGGAGCTACG+TGG - Chr5:93556441-93556460 None:intergenic 45.0%
!! CTATGTGTCTGTGTCGTTTC+TGG - Chr5:93557408-93557427 None:intergenic 45.0%
!! GGGTAATTGAGTTGGACTTG+TGG + Chr5:93555175-93555194 MsG0580029198.01.T01:CDS 45.0%
!! TGGCAGTGATGATGGTTAGT+GGG - Chr5:93553106-93553125 None:intergenic 45.0%
ACCTGGCTCAGAAAGCTTGA+AGG + Chr5:93556078-93556097 MsG0580029198.01.T01:intron 50.0%
AGGATAACTGGCTGCCTACA+TGG + Chr5:93558291-93558310 MsG0580029198.01.T01:three_prime_UTR 50.0%
CGAAAGGAGGAATAGACGCA+TGG + Chr5:93556487-93556506 MsG0580029198.01.T01:three_prime_UTR 50.0%
CTAGTTCCGGAACAGTAAGC+GGG - Chr5:93558334-93558353 None:intergenic 50.0%
CTCTGCAACGCTTTCACGAT+TGG - Chr5:93555147-93555166 None:intergenic 50.0%
CTTCGTCGCGTCAGAATTTC+CGG + Chr5:93555623-93555642 MsG0580029198.01.T01:CDS 50.0%
CTTGTGGCCTAATGCATCCA+AGG + Chr5:93555191-93555210 MsG0580029198.01.T01:CDS 50.0%
GATCTCCCATACCCCTACAA+TGG - Chr5:93557785-93557804 None:intergenic 50.0%
GCTAGTTCCGGAACAGTAAG+CGG - Chr5:93558335-93558354 None:intergenic 50.0%
GCTTACCTGTTTCGGAGCTA+AGG + Chr5:93558420-93558439 MsG0580029198.01.T01:three_prime_UTR 50.0%
GGATGATTCACTGCACGGAA+AGG + Chr5:93556193-93556212 MsG0580029198.01.T01:intron 50.0%
GTTGTTGCTGGCAGTGATGA+TGG - Chr5:93553114-93553133 None:intergenic 50.0%
TAAGTCCAGCACCCCTTCTA+TGG - Chr5:93553470-93553489 None:intergenic 50.0%
TCCTGCTCTCGTAGAGAAGA+AGG - Chr5:93557297-93557316 None:intergenic 50.0%
TCCTTCAAGCTTTCTGAGCC+AGG - Chr5:93556082-93556101 None:intergenic 50.0%
TCCTTCTTCTCTACGAGAGC+AGG + Chr5:93557293-93557312 MsG0580029198.01.T01:intron 50.0%
TGAGTTCCCGCTTACTGTTC+CGG + Chr5:93558325-93558344 MsG0580029198.01.T01:three_prime_UTR 50.0%
TGTGGCTGCAATTGTGGTTG+TGG - Chr5:93554602-93554621 None:intergenic 50.0%
TTCTTCTCTACGAGAGCAGG+AGG + Chr5:93557296-93557315 MsG0580029198.01.T01:intron 50.0%
! AAGCGTTGCAGAGAGGTGTA+AGG + Chr5:93555154-93555173 MsG0580029198.01.T01:CDS 50.0%
! AGCGTTGCAGAGAGGTGTAA+GGG + Chr5:93555155-93555174 MsG0580029198.01.T01:CDS 50.0%
! AGGGGTATGGGAGATCACTT+TGG + Chr5:93557789-93557808 MsG0580029198.01.T01:intron 50.0%
! CAGCTGATTCCCGGTTAGAT+AGG - Chr5:93555103-93555122 None:intergenic 50.0%
! CATTTCCATAGAAGGGGTGC+TGG + Chr5:93553462-93553481 MsG0580029198.01.T01:CDS 50.0%
! GAGATCCCGAGCTTCAAGTT+AGG + Chr5:93556245-93556264 MsG0580029198.01.T01:intron 50.0%
! TTTAGAGCCAATGGAGGGTG+TGG + Chr5:93557827-93557846 MsG0580029198.01.T01:three_prime_UTR 50.0%
!! ATCGTGAAAGCGTTGCAGAG+AGG + Chr5:93555147-93555166 MsG0580029198.01.T01:CDS 50.0%
!! CTGGCAGTGATGATGGTTAG+TGG - Chr5:93553107-93553126 None:intergenic 50.0%
!! GCCACTTTGGCTTGAAGATC+TGG - Chr5:93555678-93555697 None:intergenic 50.0%
!! TGTCAGCACTGGTAGCTTGA+AGG - Chr5:93557337-93557356 None:intergenic 50.0%
CATGCTGGGAAGTCGAAAGG+AGG + Chr5:93556474-93556493 MsG0580029198.01.T01:three_prime_UTR 55.0%
CCACTCCTTAGCTCCGAAAC+AGG - Chr5:93558428-93558447 None:intergenic 55.0%
CCTGTTTCGGAGCTAAGGAG+TGG + Chr5:93558425-93558444 MsG0580029198.01.T01:three_prime_UTR 55.0%
CGGAAATTCTGACGCGACGA+AGG - Chr5:93555625-93555644 None:intergenic 55.0%
TCACTGCACGGAAAGGCTTC+AGG + Chr5:93556200-93556219 MsG0580029198.01.T01:intron 55.0%
TCTTCAAGCCAAAGTGGCCG+AGG + Chr5:93555680-93555699 MsG0580029198.01.T01:CDS 55.0%
TTCAGGCGACGATGAAGCGT+GGG + Chr5:93556217-93556236 MsG0580029198.01.T01:intron 55.0%
! AACGACTGGTCCGGACAATG+AGG + Chr5:93557877-93557896 MsG0580029198.01.T01:three_prime_UTR 55.0%
! CTAAAGCGTCAGGGCGACAT+AGG + Chr5:93557508-93557527 MsG0580029198.01.T01:intron 55.0%
!! TGAGCCGGTCCTTTTTGAGC+AGG + Chr5:93557573-93557592 MsG0580029198.01.T01:intron 55.0%
CTGGCTGCCTACATGGAACG+AGG + Chr5:93558298-93558317 MsG0580029198.01.T01:three_prime_UTR 60.0%
CTTCAGGCGACGATGAAGCG+TGG + Chr5:93556216-93556235 MsG0580029198.01.T01:intron 60.0%
TCAGGCGACGATGAAGCGTG+GGG + Chr5:93556218-93556237 MsG0580029198.01.T01:intron 60.0%
! GTCGCTGCTCAGCTGATTCC+CGG - Chr5:93555112-93555131 None:intergenic 60.0%
CAGGCGACGATGAAGCGTGG+GGG + Chr5:93556219-93556238 MsG0580029198.01.T01:intron 65.0%
CGACGATGAAGCGTGGGGGA+CGG + Chr5:93556223-93556242 MsG0580029198.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 93553037 93558750 93553037 ID=MsG0580029198.01;Name=MsG0580029198.01
Chr5 mRNA 93553037 93558750 93553037 ID=MsG0580029198.01.T01;Parent=MsG0580029198.01;Name=MsG0580029198.01.T01;_AED=0.28;_eAED=0.28;_QI=212|0.62|0.66|0.88|0.87|0.77|9|1006|258
Chr5 exon 93554394 93554436 93554394 ID=MsG0580029198.01.T01:exon:18079;Parent=MsG0580029198.01.T01
Chr5 exon 93555042 93555238 93555042 ID=MsG0580029198.01.T01:exon:18080;Parent=MsG0580029198.01.T01
Chr5 exon 93558238 93558750 93558238 ID=MsG0580029198.01.T01:exon:18086;Parent=MsG0580029198.01.T01
Chr5 five_prime_UTR 93553037 93553248 93553037 ID=MsG0580029198.01.T01:five_prime_utr;Parent=MsG0580029198.01.T01
Chr5 CDS 93553249 93553553 93553249 ID=MsG0580029198.01.T01:cds;Parent=MsG0580029198.01.T01
Chr5 CDS 93554394 93554436 93554394 ID=MsG0580029198.01.T01:cds;Parent=MsG0580029198.01.T01
Chr5 CDS 93555042 93555238 93555042 ID=MsG0580029198.01.T01:cds;Parent=MsG0580029198.01.T01
Chr5 CDS 93555566 93555701 93555566 ID=MsG0580029198.01.T01:cds;Parent=MsG0580029198.01.T01
Chr5 CDS 93556370 93556465 93556370 ID=MsG0580029198.01.T01:cds;Parent=MsG0580029198.01.T01
Chr5 three_prime_UTR 93556466 93556600 93556466 ID=MsG0580029198.01.T01:three_prime_utr;Parent=MsG0580029198.01.T01
Chr5 three_prime_UTR 93557137 93557254 93557137 ID=MsG0580029198.01.T01:three_prime_utr;Parent=MsG0580029198.01.T01
Chr5 three_prime_UTR 93557791 93557943 93557791 ID=MsG0580029198.01.T01:three_prime_utr;Parent=MsG0580029198.01.T01
Chr5 three_prime_UTR 93558040 93558126 93558040 ID=MsG0580029198.01.T01:three_prime_utr;Parent=MsG0580029198.01.T01
Chr5 three_prime_UTR 93558238 93558750 93558238 ID=MsG0580029198.01.T01:three_prime_utr;Parent=MsG0580029198.01.T01
Chr5 mRNA 93553037 93558499 93553037 ID=MsG0580029198.01.T02;Parent=MsG0580029198.01;Name=MsG0580029198.01.T02;_AED=0.27;_eAED=0.27;_QI=1231|0.87|0.77|1|0.62|0.66|9|0|228
Chr5 exon 93555041 93555238 93555041 ID=MsG0580029198.01.T02:exon:18087;Parent=MsG0580029198.01.T02
Chr5 exon 93556043 93556286 93556043 ID=MsG0580029198.01.T02:exon:18088;Parent=MsG0580029198.01.T02
Chr5 exon 93558266 93558499 93558266 ID=MsG0580029198.01.T02:exon:18089;Parent=MsG0580029198.01.T02
Chr5 five_prime_UTR 93553037 93553553 93553037 ID=MsG0580029198.01.T02:five_prime_utr;Parent=MsG0580029198.01.T02
Chr5 five_prime_UTR 93555041 93555238 93555041 ID=MsG0580029198.01.T02:five_prime_utr;Parent=MsG0580029198.01.T02
Chr5 five_prime_UTR 93555566 93555701 93555566 ID=MsG0580029198.01.T02:five_prime_utr;Parent=MsG0580029198.01.T02
Chr5 five_prime_UTR 93556043 93556286 93556043 ID=MsG0580029198.01.T02:five_prime_utr;Parent=MsG0580029198.01.T02
Chr5 five_prime_UTR 93556370 93556505 93556370 ID=MsG0580029198.01.T02:five_prime_utr;Parent=MsG0580029198.01.T02
Chr5 CDS 93556506 93556600 93556506 ID=MsG0580029198.01.T02:cds;Parent=MsG0580029198.01.T02
Chr5 CDS 93557137 93557254 93557137 ID=MsG0580029198.01.T02:cds;Parent=MsG0580029198.01.T02
Chr5 CDS 93557791 93557943 93557791 ID=MsG0580029198.01.T02:cds;Parent=MsG0580029198.01.T02
Chr5 CDS 93558040 93558126 93558040 ID=MsG0580029198.01.T02:cds;Parent=MsG0580029198.01.T02
Chr5 CDS 93558266 93558499 93558266 ID=MsG0580029198.01.T02:cds;Parent=MsG0580029198.01.T02
Gene Sequence

>MsG0580029198.01.T02

ATGGCTCAAAATAGATCCGGAGAAAGGAGGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGAAGAATATTCTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCAAATTATAATCCCTTAATTGGGTGGATTCATGGAGCTCAAATGGTTGCATTCAACATGCAGGGGTATGGGAGATCACTTTGGCTGATGCATGGAATGTTTAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTCTTAACGACTGGTCCGGACAATGAGGTCTTTGATCCTAAAGCTAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGAGAAGGATGGTATTATGATTTCAAACATACACACTTTGATCAATATTCACCTCCAGATTTCTATGCAAGATATAATGAAAAAAACAAGGCAATAGAGGATAACTGGCTGCCTACATGGAACGAGGTATTTGAGTTCCCGCTTACTGTTCCGGAACTAGCCCTTCTTCGTATAGAAGTTCACGAGTATGACATGTCCGAGAAAGATGATTTTGGTGGCCAAACATGCTTACCTGTTTCGGAGCTAAGGAGTGGCGTTCGAGCAGTTTCTCTGCATAGCCAGAAGGGAGATAATACAACTCTGTAA

>MsG0580029198.01.T01

ATGTCAAAACAAACATACAGTGTTTGTTTATGCTGGCGTAGAAGATTCAAGCTAGCTTTATCAGAAGCACCACAAGAGATCAAGACCCTCTTTGAACAATACTCAGAAAATGATCTCATGACACCTTCAAACCTCAAAAGATTCTTAATTGAAATACAAAAACAAGAACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGATAGTTTCAAGCATTTCCATAGAAGGGGTGCTGGACTTAATCTTGAAACTTTTTTCAAGTTTCTCTTTAGTGATAGTAACCTTGCTCTTTTATCTTCAATTGGGGTGAAGGTTAACATGGTGAACTATATGTATTGGTCCATCGCGGTGCACCATGATATGACATTACCTTTGTCCCATTATTTCATATATACTGGTCACAATTCCTATCTAACCGGGAATCAGCTGAGCAGCGACTGCAGCGACATTCCAATCGTGAAAGCGTTGCAGAGAGGTGTAAGGGTAATTGAGTTGGACTTGTGGCCTAATGCATCCAAGGATAATGTTGATGTTCTTCATGGAAGGACATTGACTACTCCTGTGGAGCTCATTAGATGCTTGAGGTCTATTAAGGAACATGCCTTCGTCGCGTCAGAATTTCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAAGCCAAAGTGGCCGAGGGAAACAGTTTGGATAAAGAATATTTTCATGACGAGGAAGAGCTTTCTGAATCAGACAAGTCACATCACCACGTAGCTCCAGAATATAAGGTTTAA

Protein sequence

>MsG0580029198.01.T02

MAQNRSGERRRISLSEQQLEKAAITHGKEIVRFTQKNILRVFPKGTRIDSSNYNPLIGWIHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLTTGPDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYARYNEKNKAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRSGVRAVSLHSQKGDNTTL*

>MsG0580029198.01.T01

MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFEQYSENDLMTPSNLKRFLIEIQKQEQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDSNLALLSSIGVKVNMVNYMYWSIAVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDIPIVKALQRGVRVIELDLWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFVASEFPVVITLEDHLTPDLQAKVAEGNSLDKEYFHDEEELSESDKSHHHVAPEYKV*