AlfalfaGEDB | MsG0280007776.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007776.01

KEGG: K09422
GO: GO:0000786 GO:0003677 GO:0005634 GO:0006334
PFAM: PF00538

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007776.01.T01	XP_039686344.1	98.276	174	3	0	61	234	98	271	1.00E-114	339

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007776.01.T01	C0HIA3	52.137	117	55	1	60	176	123	238	5.53E-33	124

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007776.01.T01	A0A072V657	98.276	174	3	0	61	234	98	271	4.77e-115	339

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048982.01	MsG0280007776.01	0.808662	2.774072e-50	1.595368e-47
MsG0180000157.01	MsG0280007776.01	0.809756	1.617096e-50	9.575335e-48
MsG0180000271.01	MsG0280007776.01	0.804469	2.127942e-49	1.098030e-46
MsG0180000680.01	MsG0280007776.01	0.813733	2.204708e-51	1.451339e-48
MsG0180002140.01	MsG0280007776.01	0.825472	4.601353e-54	4.197879e-51
MsG0180002955.01	MsG0280007776.01	0.821017	5.048509e-53	4.059859e-50
MsG0180003379.01	MsG0280007776.01	0.814821	1.267502e-51	8.592996e-49
MsG0180004824.01	MsG0280007776.01	0.800972	1.121554e-48	5.293738e-46
MsG0180005106.01	MsG0280007776.01	0.860048	2.709879e-63	7.309937e-60
MsG0180005160.01	MsG0280007776.01	0.842118	3.142632e-58	4.717439e-55
MsG0180005268.01	MsG0280007776.01	0.814614	1.408323e-51	9.494818e-49
MsG0180005354.01	MsG0280007776.01	0.845463	3.997378e-59	6.667094e-56
MsG0180005787.01	MsG0280007776.01	0.809605	1.741882e-50	1.027332e-47
MsG0180005960.01	MsG0280007776.01	0.805629	1.217083e-49	6.470759e-47
MsG0180006104.01	MsG0280007776.01	0.819189	1.323751e-52	1.011602e-49
MsG0280006440.01	MsG0280007776.01	0.808238	3.417297e-50	1.943726e-47
MsG0280006634.01	MsG0280007776.01	0.801740	7.807168e-49	3.756813e-46
MsG0280006669.01	MsG0280007776.01	0.825437	4.690682e-54	4.275057e-51
MsG0280006906.01	MsG0280007776.01	0.805459	1.321260e-49	6.994110e-47
MsG0280007691.01	MsG0280007776.01	0.868912	4.588090e-66	1.688598e-62
MsG0280007775.01	MsG0280007776.01	0.859906	2.989569e-63	8.024161e-60
MsG0280007776.01	MsG0280008295.01	0.803412	3.529939e-49	1.772679e-46
MsG0280007776.01	MsG0280009350.01	0.812777	3.574707e-51	2.293098e-48
MsG0280007776.01	MsG0280009598.01	0.815323	9.804949e-52	6.738660e-49
MsG0280007776.01	MsG0280011287.01	0.819060	1.416155e-52	1.078419e-49
MsG0280007776.01	MsG0380011895.01	0.817430	3.310641e-52	2.410567e-49
MsG0280007776.01	MsG0380013471.01	0.837704	4.442702e-57	5.819057e-54
MsG0280007776.01	MsG0380014727.01	0.825442	4.677817e-54	4.263903e-51
MsG0280007776.01	MsG0380015614.01	0.812409	4.301975e-51	2.733307e-48
MsG0280007776.01	MsG0380015745.01	0.842880	1.973112e-58	3.033023e-55
MsG0280007776.01	MsG0380016117.01	0.807716	4.411960e-50	2.475223e-47
MsG0280007776.01	MsG0380016182.01	0.806597	7.615487e-50	4.150217e-47
MsG0280007776.01	MsG0380016740.01	0.852729	3.812806e-61	8.042428e-58
MsG0280007776.01	MsG0380017126.01	0.805532	1.275465e-49	6.764053e-47
MsG0280007776.01	MsG0380017215.01	0.802928	4.445466e-49	2.204922e-46
MsG0280007776.01	MsG0380017229.01	0.807818	4.197613e-50	2.361208e-47
MsG0280007776.01	MsG0380017322.01	0.817196	3.737926e-52	2.704073e-49
MsG0280007776.01	MsG0380017512.01	0.839159	1.872486e-57	2.563587e-54
MsG0280007776.01	MsG0480018606.01	0.816605	5.072543e-52	3.610852e-49
MsG0280007776.01	MsG0480018847.01	0.815962	7.063999e-52	4.940735e-49
MsG0280007776.01	MsG0480022246.01	0.835548	1.573563e-56	1.930524e-53
MsG0280007776.01	MsG0480022248.01	0.809617	1.732142e-50	1.021927e-47
MsG0280007776.01	MsG0480022343.01	0.803382	3.579696e-49	1.796242e-46
MsG0280007776.01	MsG0480022392.01	-0.800013	1.758443e-48	8.099807e-46
MsG0280007776.01	MsG0480022933.01	0.843136	1.686880e-58	2.613897e-55
MsG0280007776.01	MsG0480023099.01	0.810166	1.319259e-50	7.895697e-48
MsG0280007776.01	MsG0480023377.01	0.822500	2.291887e-53	1.921734e-50
MsG0280007776.01	MsG0480023638.01	0.837783	4.239122e-57	5.565899e-54
MsG0280007776.01	MsG0480023776.01	0.812401	4.319170e-51	2.743663e-48
MsG0280007776.01	MsG0480023937.01	0.815701	8.077803e-52	5.609629e-49
MsG0280007776.01	MsG0580024581.01	0.805577	1.247980e-49	6.626081e-47
MsG0280007776.01	MsG0580026067.01	0.830128	3.495722e-55	3.650098e-52
MsG0280007776.01	MsG0580029794.01	0.812314	4.511251e-51	2.858888e-48
MsG0280007776.01	MsG0680034451.01	0.801841	7.444050e-49	3.591494e-46
MsG0280007776.01	MsG0780036117.01	0.829536	4.871613e-55	5.000184e-52
MsG0280007776.01	MsG0780038092.01	0.817244	3.646417e-52	2.641363e-49
MsG0280007776.01	MsG0780038644.01	0.849117	3.972230e-60	7.453515e-57
MsG0280007776.01	MsG0780038833.01	0.804949	1.689568e-49	8.827684e-47
MsG0280007776.01	MsG0780040375.01	-0.820244	7.597736e-53	5.979442e-50
MsG0280007776.01	MsG0880042743.01	0.858992	5.625947e-63	1.463189e-59
MsG0280007776.01	MsG0880043059.01	0.803045	4.204423e-49	2.091528e-46
MsG0280007776.01	MsG0880045756.01	0.808603	2.855810e-50	1.639887e-47
MsG0280007776.01	MsG0880045869.01	0.802549	5.323112e-49	2.614839e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007776.01.T01	MTR_2g031870	98.276	174	3	0	61	234	98	271	1.21e-118	339
MsG0280007776.01.T01	MTR_2g031870	98.276	174	3	0	61	234	124	297	3.23e-118	339
MsG0280007776.01.T01	MTR_8g494240	81.034	116	22	0	61	176	122	237	5.08e-59	188
MsG0280007776.01.T01	MTR_8g494240	81.034	116	22	0	61	176	122	237	1.04e-58	188
MsG0280007776.01.T01	MTR_8g494240	81.034	116	22	0	61	176	122	237	6.55e-58	189
MsG0280007776.01.T01	MTR_8g092810	68.182	132	33	1	58	180	121	252	4.74e-49	167
MsG0280007776.01.T01	MTR_1g088180	64.167	120	40	2	62	181	295	411	1.86e-40	144
MsG0280007776.01.T01	MTR_5g015340	51.176	170	82	1	59	227	118	287	7.15e-23	94.4
MsG0280007776.01.T01	MTR_5g015340	51.176	170	82	1	59	227	118	287	7.15e-23	94.4
MsG0280007776.01.T01	MTR_4g097130	40.984	122	70	2	57	176	135	256	1.20e-22	94.4
MsG0280007776.01.T01	MTR_4g097130	41.739	115	66	1	63	176	137	251	1.32e-22	94.0
MsG0280007776.01.T01	MTR_4g097130	41.739	115	66	1	63	176	137	251	1.34e-22	94.0
MsG0280007776.01.T01	MTR_5g015340	51.176	170	82	1	59	227	118	287	2.20e-22	94.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007776.01.T01	AT1G49950	52.846	123	51	3	61	178	120	240	1.44e-31	117
MsG0280007776.01.T01	AT1G49950	52.846	123	51	3	61	178	120	240	1.44e-31	117
MsG0280007776.01.T01	AT1G49950	52.846	123	51	3	61	178	120	240	1.44e-31	117
MsG0280007776.01.T01	AT5G67580	43.605	172	94	2	58	227	121	291	7.61e-14	69.7
MsG0280007776.01.T01	AT5G67580	43.605	172	94	2	58	227	121	291	7.61e-14	69.7
MsG0280007776.01.T01	AT3G49850	34.259	108	71	0	62	169	123	230	1.90e-12	65.9
MsG0280007776.01.T01	AT3G49850	34.259	108	71	0	62	169	123	230	1.90e-12	65.9
MsG0280007776.01.T01	AT1G54260	46.377	69	37	0	61	129	6	74	4.85e-12	63.2

Find 56 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAATAAATGATTCCTTTAT+AGG	0.140767	2:-20404770	None:intergenic
AAGCCAAGATTTACCGTCTT+TGG	0.203558	2:-20407331	None:intergenic
ACACCCATCAACATTATTAT+TGG	0.217687	2:+20407043	MsG0280007776.01.T01:CDS
TAGATATAGCTTCCATTATA+AGG	0.267054	2:-20404822	None:intergenic
GTATTCTGTAGGACCATTAC+TGG	0.323222	2:+20405951	MsG0280007776.01.T01:intron
AGCCAAGATTTACCGTCTTT+GGG	0.343837	2:-20407330	None:intergenic
CCTTCCAATAATAATGTTGA+TGG	0.370851	2:-20407047	None:intergenic
TTATTGGAAGGGAGGCAAAA+AGG	0.396790	2:+20407059	MsG0280007776.01.T01:CDS
TAACTGTGTTTACGTTATAC+AGG	0.406304	2:+20404791	MsG0280007776.01.T01:CDS
TTCAGGTGAAGCGCAGGTAT+AGG	0.433823	2:+20406985	MsG0280007776.01.T01:intron
TTCTAATTCTAAATCGATCT+CGG	0.439248	2:-20407126	None:intergenic
TTCTAAATCGATCTCGGACT+TGG	0.444342	2:-20407120	None:intergenic
CTCTTCAGCCTCCGCCATGA+GGG	0.446885	2:-20407216	None:intergenic
TTGTAGAAGCTGAAAGGAAA+AGG	0.451081	2:+20407291	MsG0280007776.01.T01:CDS
CAGGTTGGATAACCTTATAA+TGG	0.457504	2:+20404810	MsG0280007776.01.T01:CDS
GAGATGTTCGAACGTAATCA+AGG	0.457803	2:+20404403	None:intergenic
GGAGGCAGAGGCTGCAGAAG+CGG	0.467500	2:+20407247	MsG0280007776.01.T01:CDS
AATCGATCTCGGACTTGGTA+TGG	0.471610	2:-20407115	None:intergenic
CTTCCTCTGTCTGAATATGC+TGG	0.476422	2:-20407020	None:intergenic
CCTCATGGCGGAGGCTGAAG+AGG	0.487598	2:+20407217	MsG0280007776.01.T01:CDS
AACCATTGCTTCTTTCATTG+AGG	0.488576	2:+20404876	MsG0280007776.01.T01:CDS
TGCTCGAGCAGTTGCTGAAG+CGG	0.494217	2:+20407190	MsG0280007776.01.T01:CDS
CTGAAGTATCTTACATCTCG+TGG	0.499992	2:+20406010	MsG0280007776.01.T01:CDS
GGCAGAGGCTGCAGAAGCGG+AGG	0.501552	2:+20407250	MsG0280007776.01.T01:CDS
AGCGGAAGCCCTCATGGCGG+AGG	0.503203	2:+20407208	MsG0280007776.01.T01:CDS
CCTCTTCAGCCTCCGCCATG+AGG	0.504586	2:-20407217	None:intergenic
TGCTGAAGCGGAAGCCCTCA+TGG	0.511274	2:+20407202	MsG0280007776.01.T01:CDS
AAGGCTCTATGAAATTTCAC+AGG	0.518817	2:+20407078	MsG0280007776.01.T01:CDS
TGTGTTTACGTTATACAGGT+TGG	0.518843	2:+20404795	MsG0280007776.01.T01:CDS
GGCTGCCTCTTGTGCAGACA+TGG	0.522460	2:-20407159	None:intergenic
GACACTTTACCACTGTTGAT+CGG	0.525627	2:+20404466	MsG0280007776.01.T01:CDS
ATATCTAGCTTGAATGAACT+TGG	0.526305	2:+20404838	MsG0280007776.01.T01:CDS
ATCTCGTGGAAAACTGATCA+AGG	0.527774	2:+20406024	MsG0280007776.01.T01:CDS
AACTGCTCGAGCAGCACATG+CGG	0.528875	2:-20407180	None:intergenic
TATTCTGTAGGACCATTACT+GGG	0.533689	2:+20405952	MsG0280007776.01.T01:intron
TTATATTTCAGGTGAAGCGC+AGG	0.535455	2:+20406979	MsG0280007776.01.T01:intron
CTGTCTGAATATGCTGGAGT+AGG	0.541994	2:-20407014	None:intergenic
CCATCAACATTATTATTGGA+AGG	0.543532	2:+20407047	MsG0280007776.01.T01:CDS
AGAGGCAACAAAGGAGGCAG+AGG	0.547850	2:+20407235	MsG0280007776.01.T01:CDS
AGTCAGCAGGTGCCCAGTAA+TGG	0.551122	2:-20405964	None:intergenic
CAACATTATTATTGGAAGGG+AGG	0.564310	2:+20407051	MsG0280007776.01.T01:CDS
CATCAACATTATTATTGGAA+GGG	0.566044	2:+20407048	MsG0280007776.01.T01:CDS
AAGGTCCATGTCTGCACAAG+AGG	0.566181	2:+20407154	MsG0280007776.01.T01:CDS
TACCTCAATGAAAGAAGCAA+TGG	0.571520	2:-20404878	None:intergenic
TCTAGCTTGAATGAACTTGG+TGG	0.579223	2:+20404841	MsG0280007776.01.T01:CDS
CTTCCAATAATAATGTTGAT+GGG	0.591104	2:-20407046	None:intergenic
GGAGGCTGAAGAGGCAACAA+AGG	0.596715	2:+20407226	MsG0280007776.01.T01:CDS
GGCTGAAGAGGCAACAAAGG+AGG	0.605389	2:+20407229	MsG0280007776.01.T01:CDS
AGATGTTCGAACGTAATCAA+GGG	0.616289	2:+20404404	None:intergenic
AGAAGCGGAGGCAGATGCAA+TGG	0.616552	2:+20407262	MsG0280007776.01.T01:CDS
AGCTGAAAGGAAAAGGCTGA+AGG	0.619969	2:+20407298	MsG0280007776.01.T01:CDS
TGGTAAAGTGTCACCTTGTG+TGG	0.621745	2:-20404455	None:intergenic
GTCACTTTAGCAACCACACA+AGG	0.647777	2:+20404442	MsG0280007776.01.T01:CDS
AGGCTCTATGAAATTTCACA+GGG	0.674594	2:+20407079	MsG0280007776.01.T01:CDS
ACTCCAGCATATTCAGACAG+AGG	0.701760	2:+20407017	MsG0280007776.01.T01:CDS
TGAAGCGGAAGCCCTCATGG+CGG	0.749745	2:+20407205	MsG0280007776.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATATCTTAGAAAATTTATT+GGG	+	Chr2:20405047-20405066	MsG0280007776.01.T01:intron	10.0%
!!	AATATCTTAGTAAATTTATT+GGG	+	Chr2:20405135-20405154	MsG0280007776.01.T01:intron	10.0%
!!!	ATTTAGAATTAGAAAAAATA+AGG	+	Chr2:20407135-20407154	MsG0280007776.01.T01:CDS	10.0%
!!	GAATATCTTAGAAAATTTAT+TGG	+	Chr2:20405046-20405065	MsG0280007776.01.T01:intron	15.0%
!!	GAATATCTTAGTAAATTTAT+TGG	+	Chr2:20405134-20405153	MsG0280007776.01.T01:intron	15.0%
!!	TAAATAAATGATTCCTTTAT+AGG	-	Chr2:20404773-20404792	None:intergenic	15.0%
!!!	AATTTGAGATTTTATTTCAT+GGG	+	Chr2:20406949-20406968	MsG0280007776.01.T01:intron	15.0%
!!	GATTGTAATTTATTACTCTA+GGG	-	Chr2:20405365-20405384	None:intergenic	20.0%
!!	TAAATGTATAAGACTAAATC+AGG	-	Chr2:20406868-20406887	None:intergenic	20.0%
!!	TATTTATCTTGATCAACTAT+TGG	+	Chr2:20404540-20404559	MsG0280007776.01.T01:intron	20.0%
!!	TCTATGATTAGTACAAATAT+GGG	+	Chr2:20405172-20405191	MsG0280007776.01.T01:intron	20.0%
!!	TGATTGTAATTTATTACTCT+AGG	-	Chr2:20405366-20405385	None:intergenic	20.0%
!!	TTCTATGATTAGTACAAATA+TGG	+	Chr2:20405083-20405102	MsG0280007776.01.T01:intron	20.0%
!!	TTTAAGTCTACATTAGAAAA+TGG	-	Chr2:20406805-20406824	None:intergenic	20.0%
!!	TTTGTACTAATCATAGAATA+TGG	-	Chr2:20405081-20405100	None:intergenic	20.0%
!!!	AAATAATTTTATAGTGCAGT+CGG	+	Chr2:20404601-20404620	MsG0280007776.01.T01:intron	20.0%
!!!	ATACACATCTATTTGAAATA+GGG	+	Chr2:20406678-20406697	MsG0280007776.01.T01:intron	20.0%
!!!	ATTTTCTTCTATACAATTCT+AGG	-	Chr2:20405433-20405452	None:intergenic	20.0%
!!!	CAATTTGAGATTTTATTTCA+TGG	+	Chr2:20406948-20406967	MsG0280007776.01.T01:intron	20.0%
!	AAAAAACTTAAGACTCACAT+TGG	+	Chr2:20406366-20406385	MsG0280007776.01.T01:intron	25.0%
!	AATAAAATAATCTCAGGACA+AGG	+	Chr2:20406539-20406558	MsG0280007776.01.T01:intron	25.0%
!	ATAAAATAATCTCAGGACAA+GGG	+	Chr2:20406540-20406559	MsG0280007776.01.T01:intron	25.0%
!	ATCTTAGAAAATTTATTGGG+AGG	+	Chr2:20405050-20405069	MsG0280007776.01.T01:intron	25.0%
!	ATCTTAGTAAATTTATTGGG+AGG	+	Chr2:20405138-20405157	MsG0280007776.01.T01:intron	25.0%
!	CAAAACAAGATAATGAAATC+AGG	-	Chr2:20404708-20404727	None:intergenic	25.0%
!	CATCAACATTATTATTGGAA+GGG	+	Chr2:20407048-20407067	MsG0280007776.01.T01:CDS	25.0%
!	CATTTATTGTGAGCTATATT+TGG	+	Chr2:20406882-20406901	MsG0280007776.01.T01:intron	25.0%
!	CTTCCAATAATAATGTTGAT+GGG	-	Chr2:20407049-20407068	None:intergenic	25.0%
!	GATATTGTCTTGTAAATGAT+AGG	-	Chr2:20405398-20405417	None:intergenic	25.0%
!	TAGATATAGCTTCCATTATA+AGG	-	Chr2:20404825-20404844	None:intergenic	25.0%
!	TAGCTGAATAAAATAATCTC+AGG	+	Chr2:20406533-20406552	MsG0280007776.01.T01:intron	25.0%
!	TATACCAATTATATGACTGT+AGG	+	Chr2:20406469-20406488	MsG0280007776.01.T01:intron	25.0%
!	TATTGTAAGTTTGCATTAGA+TGG	-	Chr2:20406085-20406104	None:intergenic	25.0%
!	TGAATTGTTATATGGTCATA+TGG	+	Chr2:20405248-20405267	MsG0280007776.01.T01:intron	25.0%
!	TTCTAATTCTAAATCGATCT+CGG	-	Chr2:20407129-20407148	None:intergenic	25.0%
!!	CATACACATCTATTTGAAAT+AGG	+	Chr2:20406677-20406696	MsG0280007776.01.T01:intron	25.0%
!!	TACACATCTATTTGAAATAG+GGG	+	Chr2:20406679-20406698	MsG0280007776.01.T01:intron	25.0%
!!	TTCATCATTTTGTATTCTGT+AGG	+	Chr2:20405940-20405959	MsG0280007776.01.T01:intron	25.0%
!!!	TAATACCATCTAGTGTTTTT+TGG	-	Chr2:20406263-20406282	None:intergenic	25.0%
!!!	TGGGTTGAATTTTATATTTC+AGG	+	Chr2:20406968-20406987	MsG0280007776.01.T01:intron	25.0%
	AACTTGGTTCATGGAATATA+TGG	-	Chr2:20406312-20406331	None:intergenic	30.0%
	AAGAAAATTACAACTCGACA+AGG	-	Chr2:20406651-20406670	None:intergenic	30.0%
	AAGCAGAACAAATAAAAGTG+TGG	-	Chr2:20404921-20404940	None:intergenic	30.0%
	AAGTGTTATAGCATTGCATT+TGG	+	Chr2:20405855-20405874	MsG0280007776.01.T01:intron	30.0%
	ACACCCATCAACATTATTAT+TGG	+	Chr2:20407043-20407062	MsG0280007776.01.T01:CDS	30.0%
	ACATAAAACTTCTAATGTCG+CGG	+	Chr2:20406404-20406423	MsG0280007776.01.T01:intron	30.0%
	ATTGTTATATGGTCATATGG+AGG	+	Chr2:20405251-20405270	MsG0280007776.01.T01:intron	30.0%
	CAAGAATACAAGGAAAACAA+TGG	-	Chr2:20404685-20404704	None:intergenic	30.0%
	CCATCAACATTATTATTGGA+AGG	+	Chr2:20407047-20407066	MsG0280007776.01.T01:CDS	30.0%
	CCTTCCAATAATAATGTTGA+TGG	-	Chr2:20407050-20407069	None:intergenic	30.0%
	CTACCTTGTGAATTGTTATA+TGG	+	Chr2:20405240-20405259	MsG0280007776.01.T01:intron	30.0%
	TAAAATAATCTCAGGACAAG+GGG	+	Chr2:20406541-20406560	MsG0280007776.01.T01:intron	30.0%
	TAACTGTGTTTACGTTATAC+AGG	+	Chr2:20404791-20404810	MsG0280007776.01.T01:CDS	30.0%
	TCTCACATTAGCTAGAAATA+AGG	+	Chr2:20406170-20406189	MsG0280007776.01.T01:intron	30.0%
	TGAAGCTAATTTGAGCTAAT+TGG	-	Chr2:20405646-20405665	None:intergenic	30.0%
	TGACCATATAACAATTCACA+AGG	-	Chr2:20405246-20405265	None:intergenic	30.0%
	TTGAAATAGCATCATAGATC+AGG	-	Chr2:20405771-20405790	None:intergenic	30.0%
!	ATATCTAGCTTGAATGAACT+TGG	+	Chr2:20404838-20404857	MsG0280007776.01.T01:CDS	30.0%
!	CATGTTGTTATTCTAACTTC+AGG	+	Chr2:20404957-20404976	MsG0280007776.01.T01:intron	30.0%
!	GTTTTGCGTGAATCATATAA+AGG	+	Chr2:20404722-20404741	MsG0280007776.01.T01:intron	30.0%
!	TTGATTTTGCTAGCTAAGTT+GGG	+	Chr2:20405551-20405570	MsG0280007776.01.T01:intron	30.0%
!	TTGGATGCTATTCTCATTTT+TGG	+	Chr2:20406901-20406920	MsG0280007776.01.T01:intron	30.0%
!!	AAGATGCTTGGATTAGTATT+AGG	+	Chr2:20406136-20406155	MsG0280007776.01.T01:intron	30.0%
!!	CAATTCTAGGACTATAAACA+AGG	-	Chr2:20405420-20405439	None:intergenic	30.0%
!!	CGACATTAGAAGTTTTATGT+AGG	-	Chr2:20406404-20406423	None:intergenic	30.0%
!!	TTTGATTTTGCTAGCTAAGT+TGG	+	Chr2:20405550-20405569	MsG0280007776.01.T01:intron	30.0%
!!!	AGTAGTGACTTTTTTCTTGA+AGG	+	Chr2:20406612-20406631	MsG0280007776.01.T01:intron	30.0%
	AACCATTGCTTCTTTCATTG+AGG	+	Chr2:20404876-20404895	MsG0280007776.01.T01:CDS	35.0%
	AAGGCTCTATGAAATTTCAC+AGG	+	Chr2:20407078-20407097	MsG0280007776.01.T01:CDS	35.0%
	AATAGGTGAGATCATCTTAG+TGG	-	Chr2:20405330-20405349	None:intergenic	35.0%
	ACACTAACAAACTTGGTTCA+TGG	-	Chr2:20406321-20406340	None:intergenic	35.0%
	ACTAAGATGATCTCACCTAT+TGG	+	Chr2:20405329-20405348	MsG0280007776.01.T01:intron	35.0%
	AGGCTCTATGAAATTTCACA+GGG	+	Chr2:20407079-20407098	MsG0280007776.01.T01:CDS	35.0%
	AGTGTCTATCCAGACATTAT+TGG	+	Chr2:20406282-20406301	MsG0280007776.01.T01:intron	35.0%
	ATAGGTGAGATCATCTTAGT+GGG	-	Chr2:20405329-20405348	None:intergenic	35.0%
	ATGAATGATCTTAACACGCT+TGG	-	Chr2:20404661-20404680	None:intergenic	35.0%
	CAACATTATTATTGGAAGGG+AGG	+	Chr2:20407051-20407070	MsG0280007776.01.T01:CDS	35.0%
	CAGACCTACAGTCATATAAT+TGG	-	Chr2:20406476-20406495	None:intergenic	35.0%
	CAGAGTTTGTGTAATGTGTA+GGG	-	Chr2:20406448-20406467	None:intergenic	35.0%
	CGGCAATTGTCTTTCAATTA+GGG	+	Chr2:20404621-20404640	MsG0280007776.01.T01:intron	35.0%
	CTAAGATGATCTCACCTATT+GGG	+	Chr2:20405330-20405349	MsG0280007776.01.T01:intron	35.0%
	CTCACTTGTCTTCAACATAA+TGG	-	Chr2:20405623-20405642	None:intergenic	35.0%
	GTTATAGCATTGCATTTGGT+TGG	+	Chr2:20405859-20405878	MsG0280007776.01.T01:intron	35.0%
	TACCTCAATGAAAGAAGCAA+TGG	-	Chr2:20404881-20404900	None:intergenic	35.0%
	TATTCTGTAGGACCATTACT+GGG	+	Chr2:20405952-20405971	MsG0280007776.01.T01:intron	35.0%
	TCGGCAATTGTCTTTCAATT+AGG	+	Chr2:20404620-20404639	MsG0280007776.01.T01:intron	35.0%
	TGAAATCAGGCAAGAATACA+AGG	-	Chr2:20404695-20404714	None:intergenic	35.0%
	TGTGTTTACGTTATACAGGT+TGG	+	Chr2:20404795-20404814	MsG0280007776.01.T01:CDS	35.0%
	TGTTTCTTATATACAGCCGT+TGG	+	Chr2:20406745-20406764	MsG0280007776.01.T01:intron	35.0%
	TTGGTTCATGGAATATATGG+TGG	-	Chr2:20406309-20406328	None:intergenic	35.0%
	TTGTAGAAGCTGAAAGGAAA+AGG	+	Chr2:20407291-20407310	MsG0280007776.01.T01:CDS	35.0%
	TTGTGTAATGTGTAGGGTTT+GGG	-	Chr2:20406442-20406461	None:intergenic	35.0%
	TTTGTGTAATGTGTAGGGTT+TGG	-	Chr2:20406443-20406462	None:intergenic	35.0%
!	AAGCTTTTGTAGAAGCTGAA+AGG	+	Chr2:20407285-20407304	MsG0280007776.01.T01:CDS	35.0%
!	CAGAGCTAGTTTGAAAAAGA+AGG	+	Chr2:20405586-20405605	MsG0280007776.01.T01:intron	35.0%
!	CAGGTTGGATAACCTTATAA+TGG	+	Chr2:20404810-20404829	MsG0280007776.01.T01:CDS	35.0%
!	GTTTTGCTTGCATCCTATAA+AGG	+	Chr2:20404757-20404776	MsG0280007776.01.T01:CDS	35.0%
!	TGATTTTGCTAGCTAAGTTG+GGG	+	Chr2:20405552-20405571	MsG0280007776.01.T01:intron	35.0%
!	TTAGCTCAAATTAGCTTCAG+TGG	+	Chr2:20405647-20405666	MsG0280007776.01.T01:intron	35.0%
!!	AACCAAGTTTGTTAGTGTTG+GGG	+	Chr2:20406323-20406342	MsG0280007776.01.T01:intron	35.0%
!!	GAACCAAGTTTGTTAGTGTT+GGG	+	Chr2:20406322-20406341	MsG0280007776.01.T01:intron	35.0%
!!	GTTGATCGGCTTTTTGAAAA+AGG	+	Chr2:20404480-20404499	MsG0280007776.01.T01:CDS	35.0%
!!	TGAACCAAGTTTGTTAGTGT+TGG	+	Chr2:20406321-20406340	MsG0280007776.01.T01:intron	35.0%
!!	TTGCTTAACTCTAAGATGCT+TGG	+	Chr2:20406124-20406143	MsG0280007776.01.T01:intron	35.0%
	AAGCAGAGCTTATAAAGCCT+AGG	+	Chr2:20406195-20406214	MsG0280007776.01.T01:intron	40.0%
	AATACTCGCATCTATCACCT+AGG	+	Chr2:20404564-20404583	MsG0280007776.01.T01:intron	40.0%
	AGGAGAAAAACACCCAAAGA+CGG	+	Chr2:20407318-20407337	MsG0280007776.01.T01:CDS	40.0%
	ATACTCGCATCTATCACCTA+GGG	+	Chr2:20404565-20404584	MsG0280007776.01.T01:intron	40.0%
	ATATGGTCATATGGAGGTCA+TGG	+	Chr2:20405257-20405276	MsG0280007776.01.T01:intron	40.0%
	ATCTCGTGGAAAACTGATCA+AGG	+	Chr2:20406024-20406043	MsG0280007776.01.T01:CDS	40.0%
	CCAGAGTTTGTGTAATGTGT+AGG	-	Chr2:20406449-20406468	None:intergenic	40.0%
	CCTACACATTACACAAACTC+TGG	+	Chr2:20406446-20406465	MsG0280007776.01.T01:intron	40.0%
	CTCCAGCAAACCAATTTCTA+CGG	-	Chr2:20406230-20406249	None:intergenic	40.0%
	GACACTTTACCACTGTTGAT+CGG	+	Chr2:20404466-20404485	MsG0280007776.01.T01:CDS	40.0%
	GAGAGATGGTGAAACGAATA+AGG	+	Chr2:20406569-20406588	MsG0280007776.01.T01:intron	40.0%
	GTATTCTGTAGGACCATTAC+TGG	+	Chr2:20405951-20405970	MsG0280007776.01.T01:intron	40.0%
	TAGGTGAGATCATCTTAGTG+GGG	-	Chr2:20405328-20405347	None:intergenic	40.0%
	TATGGTCATATGGAGGTCAT+GGG	+	Chr2:20405258-20405277	MsG0280007776.01.T01:intron	40.0%
	TATGGTGGTCCAATAATGTC+TGG	-	Chr2:20406294-20406313	None:intergenic	40.0%
	TCAGGCCAAAAAACACTAGA+TGG	+	Chr2:20406255-20406274	MsG0280007776.01.T01:intron	40.0%
	TGTGTAATGTGTAGGGTTTG+GGG	-	Chr2:20406441-20406460	None:intergenic	40.0%
	TTATTGGAAGGGAGGCAAAA+AGG	+	Chr2:20407059-20407078	MsG0280007776.01.T01:CDS	40.0%
	TTCAAAAAGCCGATCAACAG+TGG	-	Chr2:20404478-20404497	None:intergenic	40.0%
	TTCTAAATCGATCTCGGACT+TGG	-	Chr2:20407123-20407142	None:intergenic	40.0%
	TTTGTTCTATTCTGCACCCT+AGG	-	Chr2:20404584-20404603	None:intergenic	40.0%
!	CTGAAGTATCTTACATCTCG+TGG	+	Chr2:20406010-20406029	MsG0280007776.01.T01:CDS	40.0%
!	TAGGCTTTATAAGCTCTGCT+TGG	-	Chr2:20406196-20406215	None:intergenic	40.0%
!	TATATACAGCCGTTGGTTGT+GGG	+	Chr2:20406752-20406771	MsG0280007776.01.T01:intron	40.0%
!	TCTAGCTTGAATGAACTTGG+TGG	+	Chr2:20404841-20404860	MsG0280007776.01.T01:CDS	40.0%
!	TTATATACAGCCGTTGGTTG+TGG	+	Chr2:20406751-20406770	MsG0280007776.01.T01:intron	40.0%
!	TTATATTTCAGGTGAAGCGC+AGG	+	Chr2:20406979-20406998	MsG0280007776.01.T01:intron	40.0%
!!	AAACTAGCTCTGCTTCATGA+TGG	-	Chr2:20405578-20405597	None:intergenic	40.0%
!!	ACCAAGTTTGTTAGTGTTGG+GGG	+	Chr2:20406324-20406343	MsG0280007776.01.T01:intron	40.0%
!!	AGTGGAAAATGGGCTAGATA+TGG	+	Chr2:20406505-20406524	MsG0280007776.01.T01:intron	40.0%
!!	CGGCTTTTTGAAAAAGGATG+AGG	+	Chr2:20404486-20404505	MsG0280007776.01.T01:CDS	40.0%
!!	TATTTGAAATAGGGGTGCTG+TGG	+	Chr2:20406687-20406706	MsG0280007776.01.T01:intron	40.0%
	AACCACAAGACACAGTAACC+AGG	-	Chr2:20405724-20405743	None:intergenic	45.0%
	AACCTGGTTACTGTGTCTTG+TGG	+	Chr2:20405719-20405738	MsG0280007776.01.T01:intron	45.0%
	AATCTCAGGACAAGGGGATT+TGG	+	Chr2:20406547-20406566	MsG0280007776.01.T01:intron	45.0%
	ACCCCCAACACTAACAAACT+TGG	-	Chr2:20406328-20406347	None:intergenic	45.0%
	ACTCACATTGGCGTGAGATA+AGG	+	Chr2:20406378-20406397	MsG0280007776.01.T01:intron	45.0%
	ACTCCAGCATATTCAGACAG+AGG	+	Chr2:20407017-20407036	MsG0280007776.01.T01:CDS	45.0%
	AGATGATCTCACCTATTGGG+AGG	+	Chr2:20405333-20405352	MsG0280007776.01.T01:intron	45.0%
	AGCTGAAAGGAAAAGGCTGA+AGG	+	Chr2:20407298-20407317	MsG0280007776.01.T01:CDS	45.0%
	CACAGTAACCAGGTTTCAGA+AGG	-	Chr2:20405714-20405733	None:intergenic	45.0%
	CTAATGTCGCGGCAAATCTT+AGG	+	Chr2:20406415-20406434	MsG0280007776.01.T01:intron	45.0%
	CTGTCTGAATATGCTGGAGT+AGG	-	Chr2:20407017-20407036	None:intergenic	45.0%
	CTTCCTCTGTCTGAATATGC+TGG	-	Chr2:20407023-20407042	None:intergenic	45.0%
	GAGTTCGTGGAGTGGAAAAT+GGG	+	Chr2:20406495-20406514	MsG0280007776.01.T01:intron	45.0%
	GCAAACCAATTTCTACGGTG+AGG	-	Chr2:20406225-20406244	None:intergenic	45.0%
	GCAATCCTCACCGTAGAAAT+TGG	+	Chr2:20406217-20406236	MsG0280007776.01.T01:intron	45.0%
	TAACCAGGTTTCAGAAGGCA+TGG	-	Chr2:20405709-20405728	None:intergenic	45.0%
	TACACCAGCAAGCATATCAG+AGG	-	Chr2:20405288-20405307	None:intergenic	45.0%
	TGAGTTCGTGGAGTGGAAAA+TGG	+	Chr2:20406494-20406513	MsG0280007776.01.T01:intron	45.0%
!	AATCGATCTCGGACTTGGTA+TGG	-	Chr2:20407118-20407137	None:intergenic	45.0%
!	CTGATATGCTTGCTGGTGTA+AGG	+	Chr2:20405288-20405307	MsG0280007776.01.T01:intron	45.0%
!	GTCACTTTAGCAACCACACA+AGG	+	Chr2:20404442-20404461	MsG0280007776.01.T01:CDS	45.0%
!	TGGTAAAGTGTCACCTTGTG+TGG	-	Chr2:20404458-20404477	None:intergenic	45.0%
!!	CACCGTAGAAATTGGTTTGC+TGG	+	Chr2:20406225-20406244	MsG0280007776.01.T01:intron	45.0%
!!	TGGTTTGCTGGAGTTGAATC+AGG	+	Chr2:20406237-20406256	MsG0280007776.01.T01:intron	45.0%
!!!	AGCAGCTTTTTGAAGTCAGC+AGG	-	Chr2:20405980-20405999	None:intergenic	45.0%
	AAGGTCCATGTCTGCACAAG+AGG	+	Chr2:20407154-20407173	MsG0280007776.01.T01:CDS	50.0%
	ACAGCCTCTGATATGCTTGC+TGG	+	Chr2:20405281-20405300	MsG0280007776.01.T01:intron	50.0%
	GACAAGGGGATTTGGAGAGA+TGG	+	Chr2:20406555-20406574	MsG0280007776.01.T01:intron	50.0%
	TGAATCCTGACGCAAGAGTG+AGG	+	Chr2:20405214-20405233	MsG0280007776.01.T01:intron	50.0%
	TGACTGTAGGTCTGAGTTCG+TGG	+	Chr2:20406482-20406501	MsG0280007776.01.T01:intron	50.0%
	TTCAGGTGAAGCGCAGGTAT+AGG	+	Chr2:20406985-20407004	MsG0280007776.01.T01:intron	50.0%
	TTCTACGGTGAGGATTGCCT+AGG	-	Chr2:20406215-20406234	None:intergenic	50.0%
!!	ACTCCATGCCTTCTGAAACC+TGG	+	Chr2:20405703-20405722	MsG0280007776.01.T01:intron	50.0%
	AACTGCTCGAGCAGCACATG+CGG	-	Chr2:20407183-20407202	None:intergenic	55.0%
	AGAAGCGGAGGCAGATGCAA+TGG	+	Chr2:20407262-20407281	MsG0280007776.01.T01:CDS	55.0%
	AGAGGCAACAAAGGAGGCAG+AGG	+	Chr2:20407235-20407254	MsG0280007776.01.T01:CDS	55.0%
	AGTCAGCAGGTGCCCAGTAA+TGG	-	Chr2:20405967-20405986	None:intergenic	55.0%
	ATCCTGACGCAAGAGTGAGG+TGG	+	Chr2:20405217-20405236	MsG0280007776.01.T01:intron	55.0%
	CAGCCCAAACCCACAACCAA+CGG	-	Chr2:20406764-20406783	None:intergenic	55.0%
	GGAGGCTGAAGAGGCAACAA+AGG	+	Chr2:20407226-20407245	MsG0280007776.01.T01:CDS	55.0%
	GGCTGAAGAGGCAACAAAGG+AGG	+	Chr2:20407229-20407248	MsG0280007776.01.T01:CDS	55.0%
	GTAGGTCTGAGTTCGTGGAG+TGG	+	Chr2:20406487-20406506	MsG0280007776.01.T01:intron	55.0%
	TAGGGCACAAGCCTCCCAAT+AGG	-	Chr2:20405347-20405366	None:intergenic	55.0%
	TGCAAGACACTCACACGCAC+AGG	-	Chr2:20405680-20405699	None:intergenic	55.0%
	TGCTCGAGCAGTTGCTGAAG+CGG	+	Chr2:20407190-20407209	MsG0280007776.01.T01:CDS	55.0%
!	ACAGCCGTTGGTTGTGGGTT+TGG	+	Chr2:20406757-20406776	MsG0280007776.01.T01:intron	55.0%
!	CAGCCGTTGGTTGTGGGTTT+GGG	+	Chr2:20406758-20406777	MsG0280007776.01.T01:intron	55.0%
!	TAGTGTTGGGGGTGATGAGC+AGG	+	Chr2:20406335-20406354	MsG0280007776.01.T01:intron	55.0%
	AGCCACCTCACTCTTGCGTC+AGG	-	Chr2:20405222-20405241	None:intergenic	60.0%
	CTCTTCAGCCTCCGCCATGA+GGG	-	Chr2:20407219-20407238	None:intergenic	60.0%
	GGCTGCCTCTTGTGCAGACA+TGG	-	Chr2:20407162-20407181	None:intergenic	60.0%
	TGAAGCGGAAGCCCTCATGG+CGG	+	Chr2:20407205-20407224	MsG0280007776.01.T01:CDS	60.0%
	TGCTGAAGCGGAAGCCCTCA+TGG	+	Chr2:20407202-20407221	MsG0280007776.01.T01:CDS	60.0%
	CCTCTTCAGCCTCCGCCATG+AGG	-	Chr2:20407220-20407239	None:intergenic	65.0%
	GGAGGCAGAGGCTGCAGAAG+CGG	+	Chr2:20407247-20407266	MsG0280007776.01.T01:CDS	65.0%
!	CCTCATGGCGGAGGCTGAAG+AGG	+	Chr2:20407217-20407236	MsG0280007776.01.T01:CDS	65.0%
	AGCGGAAGCCCTCATGGCGG+AGG	+	Chr2:20407208-20407227	MsG0280007776.01.T01:CDS	70.0%
	GGCAGAGGCTGCAGAAGCGG+AGG	+	Chr2:20407250-20407269	MsG0280007776.01.T01:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	20404406	20407343	20404406	ID=MsG0280007776.01;Name=MsG0280007776.01
Chr2	mRNA	20404406	20407343	20404406	ID=MsG0280007776.01.T01;Parent=MsG0280007776.01;Name=MsG0280007776.01.T01;_AED=0.49;_eAED=0.51;_QI=0\|0.66\|0.25\|1\|0.66\|0.5\|4\|0\|234
Chr2	exon	20404406	20404518	20404406	ID=MsG0280007776.01.T01:exon:4803;Parent=MsG0280007776.01.T01
Chr2	exon	20404744	20404897	20404744	ID=MsG0280007776.01.T01:exon:4804;Parent=MsG0280007776.01.T01
Chr2	exon	20405962	20406045	20405962	ID=MsG0280007776.01.T01:exon:4805;Parent=MsG0280007776.01.T01
Chr2	exon	20406990	20407343	20406990	ID=MsG0280007776.01.T01:exon:4806;Parent=MsG0280007776.01.T01
Chr2	CDS	20404406	20404518	20404406	ID=MsG0280007776.01.T01:cds;Parent=MsG0280007776.01.T01
Chr2	CDS	20404744	20404897	20404744	ID=MsG0280007776.01.T01:cds;Parent=MsG0280007776.01.T01
Chr2	CDS	20405962	20406045	20405962	ID=MsG0280007776.01.T01:cds;Parent=MsG0280007776.01.T01
Chr2	CDS	20406990	20407343	20406990	ID=MsG0280007776.01.T01:cds;Parent=MsG0280007776.01.T01

Gene Sequence

>MsG0280007776.01.T01

ATGTTCGAACGTAATCAAGGGTTCAATATGAATAGTGTCACTTTAGCAACCACACAAGGTGACACTTTACCACTGTTGATCGGCTTTTTGAAAAAGGATGAGGCAGAGATCGAGAATCATTATCTTGTTTTGCTTGCATCCTATAAAGGAATCATTTATTTAACTGTGTTTACGTTATACAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCTTTCATTGAGGACCATTACTGGGCACCTGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAGTATCTTACATCTCGTGGAAAACTGATCAAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTCACAGGGATGAGAGCAATATCCATACCAAGTCCGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATGTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGGTAA

Protein sequence

>MsG0280007776.01.T01

MFERNQGFNMNSVTLATTQGDTLPLLIGFLKKDEAEIENHYLVLLASYKGIIYLTVFTLYRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFHRDESNIHTKSEIDLELEKIRSMSAQEAAACAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRR*