AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023776.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023776.01.T01 MTR_8g102020 61.272 173 19 2 1 125 1 173 1.83e-52 166
MsG0480023776.01.T01 MTR_6g090515 77.273 66 15 0 27 92 87 152 3.76e-28 103
MsG0480023776.01.T01 MTR_8g102030 62.745 102 35 2 27 125 91 192 1.50e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023776.01.T01 AT2G19830 70.115 87 26 0 27 113 67 153 3.42e-31 111
MsG0480023776.01.T01 AT2G19830 70.115 87 26 0 27 113 86 172 5.89e-31 111
MsG0480023776.01.T01 AT4G29160 71.831 71 19 1 27 96 58 128 3.44e-28 103
MsG0480023776.01.T01 AT4G29160 71.831 71 19 1 27 96 85 155 6.72e-28 103
MsG0480023776.01.T01 AT4G29160 71.831 71 19 1 27 96 85 155 6.72e-28 103

Find 46 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAGCTCTATCGATTATTT+AGG 0.122908 4:-89651829 None:intergenic
CGGTGTTACCTCGTTTAATT+TGG 0.150293 4:-89651965 None:intergenic
ACCATGCTTAACCGACTTCT+TGG 0.217598 4:+89651904 MsG0480023776.01.T01:CDS
CTATCGATTATTTAGGGTTT+GGG 0.274512 4:-89651822 None:intergenic
GTAGCTCTATCGATTATTTA+GGG 0.297655 4:-89651828 None:intergenic
GTTTCAAGAGCACTGACTTT+TGG 0.304284 4:-89651937 None:intergenic
GCCCACAGCACCGGGGCTGC+TGG 0.347393 4:-89655497 None:intergenic
TCTATCGATTATTTAGGGTT+TGG 0.348379 4:-89651823 None:intergenic
CTGGAGTTGTAATTGTAGGC+TGG 0.362662 4:-89655478 None:intergenic
AGATGAATTGGCAAAGTTGC+AGG 0.389941 4:+89655549 MsG0480023776.01.T01:CDS
TTGTTGCTGCCCACAGCACC+GGG 0.409023 4:-89655505 None:intergenic
TCATAGTCGGCTGCGCCAAT+TGG 0.412404 4:-89655267 None:intergenic
AACAGCTGAGGAAGATGAAT+TGG 0.415269 4:+89655537 MsG0480023776.01.T01:CDS
ACGGTTGATGCGTTGAGAAC+TGG 0.416463 4:+89654942 MsG0480023776.01.T01:CDS
GTTGTTGCTGCCCACAGCAC+CGG 0.423665 4:-89655506 None:intergenic
CTCCAGCAGCCCCGGTGCTG+TGG 0.433867 4:+89655495 MsG0480023776.01.T01:CDS
AGAAGCAGAACTTGAAGAGC+AGG 0.437358 4:+89655436 MsG0480023776.01.T01:CDS
AGAAAAGATGAGACAGGTTC+AGG 0.454403 4:+89655230 MsG0480023776.01.T01:CDS
TGGAGTTGTAATTGTAGGCT+GGG 0.459920 4:-89655477 None:intergenic
TATTTAGGGTTTGGGGATTG+AGG 0.466887 4:-89651814 None:intergenic
GCTGCTGGAGTTGTAATTGT+AGG 0.468681 4:-89655482 None:intergenic
TGAAGAGCAGGGTGCTGAGT+TGG 0.469167 4:+89655448 MsG0480023776.01.T01:CDS
GCTGAGATGGCACTTTGAGC+AGG 0.475438 4:+89655571 MsG0480023776.01.T01:CDS
GAAGCATTGTCAGCTCCAAT+TGG 0.479566 4:+89655252 MsG0480023776.01.T01:CDS
TCCAGCAGCCCCGGTGCTGT+GGG 0.480955 4:+89655496 MsG0480023776.01.T01:CDS
GGCAAAGTTGCAGGCTGAGA+TGG 0.495235 4:+89655558 MsG0480023776.01.T01:CDS
GATAATGTTGGAAGGAGCTC+AGG 0.511581 4:+89654908 MsG0480023776.01.T01:CDS
TCAAGTTCTGAAATCGCAAA+AGG 0.519318 4:-89651850 None:intergenic
TGATGATGTTGACAATATCA+TGG 0.524912 4:+89655188 MsG0480023776.01.T01:CDS
GGAATATTGGTTCGTGAATG+TGG 0.525840 4:-89651783 None:intergenic
AGCTCAGGCGACTACAGAAA+CGG 0.533361 4:+89654923 MsG0480023776.01.T01:CDS
TATCGATTATTTAGGGTTTG+GGG 0.547310 4:-89651821 None:intergenic
ACCAAGAAGTCGGTTAAGCA+TGG 0.554841 4:-89651905 None:intergenic
AATTACAACTCCAGCAGCCC+CGG 0.560878 4:+89655487 MsG0480023776.01.T01:CDS
TGTGTTGCAGATGATAATGT+TGG 0.568109 4:+89654896 MsG0480023776.01.T01:intron
ACAGACAGAAAAGATGAGAC+AGG 0.569487 4:+89655224 MsG0480023776.01.T01:CDS
GTTTAGGTTTACCAAGAAGT+CGG 0.570677 4:-89651915 None:intergenic
GGAGTTGTAATTGTAGGCTG+GGG 0.605766 4:-89655476 None:intergenic
GAAGCAGAACTTGAAGAGCA+GGG 0.614859 4:+89655437 MsG0480023776.01.T01:CDS
GAAGACAACCTCATCATAGT+CGG 0.638747 4:-89655280 None:intergenic
CAACCACTGTGCAACAGCTG+AGG 0.640629 4:+89655525 MsG0480023776.01.T01:CDS
CTTCCTCAGCTGTTGCACAG+TGG 0.653367 4:-89655528 None:intergenic
TGGCGCAGCCGACTATGATG+AGG 0.672515 4:+89655272 MsG0480023776.01.T01:CDS
TTGCAGATGATAATGTTGGA+AGG 0.696003 4:+89654900 MsG0480023776.01.T01:intron
AACTATAGCCAAATTAAACG+AGG 0.707070 4:+89651957 MsG0480023776.01.T01:CDS
TGTTGCTGCCCACAGCACCG+GGG 0.784428 4:-89655504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAAGCAAAATAATTT+TGG + Chr4:89653501-89653520 MsG0480023776.01.T01:intron 10.0%
!!! ATTGAATTATTTAAATTTTC+GGG - Chr4:89654366-89654385 None:intergenic 10.0%
!!! TATTTTATAAAATTTTGTGT+CGG + Chr4:89654291-89654310 MsG0480023776.01.T01:intron 10.0%
!! ATTAAAAAATTGACGATTAT+AGG + Chr4:89654256-89654275 MsG0480023776.01.T01:intron 15.0%
!!! AATTTTAAAAAACTAAGGTA+CGG + Chr4:89653261-89653280 MsG0480023776.01.T01:intron 15.0%
!!! AATTTTTTAATTTTTACTGG+TGG - Chr4:89654247-89654266 None:intergenic 15.0%
!!! ATTTTTTAATTTTTACTGGT+GGG - Chr4:89654246-89654265 None:intergenic 15.0%
!!! GTCAATTTTTTAATTTTTAC+TGG - Chr4:89654250-89654269 None:intergenic 15.0%
!! AAATTTCAATCTGATTGAAA+GGG + Chr4:89653058-89653077 MsG0480023776.01.T01:intron 20.0%
!! AATATTATAATTCTGCTGTT+CGG + Chr4:89653989-89654008 MsG0480023776.01.T01:intron 20.0%
!! ATAAAATTGTATAATGCCTA+TGG - Chr4:89652168-89652187 None:intergenic 20.0%
!! TATAGACTTTCAAATTTACA+TGG + Chr4:89654482-89654501 MsG0480023776.01.T01:intron 20.0%
!! TCATTAAAATGAACAAACAA+TGG - Chr4:89652834-89652853 None:intergenic 20.0%
!!! AAGTAAAATTCTGAAAAGTA+TGG - Chr4:89653424-89653443 None:intergenic 20.0%
!!! AATTATTTAAATTTTCGGGT+GGG - Chr4:89654362-89654381 None:intergenic 20.0%
!!! ATTGATTCAATTTTTCAGAT+TGG + Chr4:89655363-89655382 MsG0480023776.01.T01:intron 20.0%
!!! ATTTTAAAAAACTAAGGTAC+GGG + Chr4:89653262-89653281 MsG0480023776.01.T01:intron 20.0%
!!! TATTTTGAATGTTTGTTTCT+TGG + Chr4:89652294-89652313 MsG0480023776.01.T01:intron 20.0%
!!! TATTTTTATACAATATACCC+AGG + Chr4:89655403-89655422 MsG0480023776.01.T01:intron 20.0%
!!! TGTTTAAAATAAAGATGAGA+TGG - Chr4:89652967-89652986 None:intergenic 20.0%
!!! TTTACTATTTTCTCTATTGT+GGG + Chr4:89653659-89653678 MsG0480023776.01.T01:intron 20.0%
!!! TTTTAAAACAAGCATTAAAG+AGG - Chr4:89655063-89655082 None:intergenic 20.0%
! AAAATGAACAAACAATGGTA+TGG - Chr4:89652829-89652848 None:intergenic 25.0%
! AACTGTTAAAAAGAAAGACT+TGG + Chr4:89652714-89652733 MsG0480023776.01.T01:intron 25.0%
! AATTTCAATCTGATTGAAAG+GGG + Chr4:89653059-89653078 MsG0480023776.01.T01:intron 25.0%
! AATTTGTGATATGAAAATCC+CGG - Chr4:89653878-89653897 None:intergenic 25.0%
! ACATTAGACAATATAAGCTT+AGG - Chr4:89653718-89653737 None:intergenic 25.0%
! ACTGTTAAAAAGAAAGACTT+GGG + Chr4:89652715-89652734 MsG0480023776.01.T01:intron 25.0%
! AGTAATAATGAGATTCCTAA+AGG - Chr4:89652485-89652504 None:intergenic 25.0%
! ATGAATATGAAAAGCGAAAT+CGG - Chr4:89651988-89652007 None:intergenic 25.0%
! ATGCATATCTAGATAAAAAG+AGG - Chr4:89653915-89653934 None:intergenic 25.0%
! ATTATGTGACAATAGTTGTT+TGG - Chr4:89654124-89654143 None:intergenic 25.0%
! CAAATTTCAATCTGATTGAA+AGG + Chr4:89653057-89653076 MsG0480023776.01.T01:intron 25.0%
! GTGGAATCAAAAAAATACTT+TGG - Chr4:89652992-89653011 None:intergenic 25.0%
! TAACAGTTTAATAGCTAGTT+CGG - Chr4:89652702-89652721 None:intergenic 25.0%
! TGTTATAGAGAATACTATTG+TGG + Chr4:89652443-89652462 MsG0480023776.01.T01:intron 25.0%
! TTGTTCATACAATATTTCTC+AGG - Chr4:89655086-89655105 None:intergenic 25.0%
! TTTAGGAATCTCATTATTAC+TGG + Chr4:89652484-89652503 MsG0480023776.01.T01:intron 25.0%
!! AAAGTCTTATCTTAAGTGAT+TGG - Chr4:89653642-89653661 None:intergenic 25.0%
!! CTTTACTATTTTCTCTATTG+TGG + Chr4:89653658-89653677 MsG0480023776.01.T01:intron 25.0%
!!! ATTGGAAATTTTAGTGTGTA+TGG - Chr4:89653624-89653643 None:intergenic 25.0%
!!! CGGCAAATTTTAAAAAACTA+AGG + Chr4:89653256-89653275 MsG0480023776.01.T01:intron 25.0%
!!! GAATTATTTAAATTTTCGGG+TGG - Chr4:89654363-89654382 None:intergenic 25.0%
!!! TAAAATTTTGTGTCGGTTTA+TGG + Chr4:89654298-89654317 MsG0480023776.01.T01:intron 25.0%
!!! TGTTCATTTTAATGAAAGAG+TGG + Chr4:89652839-89652858 MsG0480023776.01.T01:intron 25.0%
AAAGATGAGATGGAATGAAA+AGG - Chr4:89652957-89652976 None:intergenic 30.0%
AACAATACATTTCCTCCTTT+AGG + Chr4:89652467-89652486 MsG0480023776.01.T01:intron 30.0%
AACTATAGCCAAATTAAACG+AGG + Chr4:89651957-89651976 MsG0480023776.01.T01:CDS 30.0%
AATAATGAGATTCCTAAAGG+AGG - Chr4:89652482-89652501 None:intergenic 30.0%
AATAGTTGTTTAGTTGCAAG+GGG - Chr4:89654076-89654095 None:intergenic 30.0%
AATCTCATTATTACTGGAGT+TGG + Chr4:89652490-89652509 MsG0480023776.01.T01:intron 30.0%
ACAATAGTTGTTTAGTTGCA+AGG - Chr4:89654078-89654097 None:intergenic 30.0%
ATTTCAATCTGATTGAAAGG+GGG + Chr4:89653060-89653079 MsG0480023776.01.T01:intron 30.0%
CAATAGTTGTTTAGTTGCAA+GGG - Chr4:89654077-89654096 None:intergenic 30.0%
GAATGGAATGGAATGAAATA+AGG + Chr4:89652795-89652814 MsG0480023776.01.T01:intron 30.0%
GATAAAAAGAGGAATGTTTC+TGG - Chr4:89653904-89653923 None:intergenic 30.0%
GTACATCAACAATGAAAGAA+AGG - Chr4:89655026-89655045 None:intergenic 30.0%
GTGCAGTAAAAAATTTCATC+AGG + Chr4:89653847-89653866 MsG0480023776.01.T01:intron 30.0%
TACAATGTTTGAAGAAGAAG+AGG + Chr4:89652565-89652584 MsG0480023776.01.T01:intron 30.0%
TAGAATAAGATAGACTTGAG+TGG + Chr4:89652773-89652792 MsG0480023776.01.T01:intron 30.0%
TATAATTGACATGTTAGCGA+AGG + Chr4:89654457-89654476 MsG0480023776.01.T01:intron 30.0%
TCAGTTGACAGAACAATATA+CGG - Chr4:89654520-89654539 None:intergenic 30.0%
TTATTTACTCTATGCTGAAG+AGG + Chr4:89655326-89655345 MsG0480023776.01.T01:intron 30.0%
TTTGGATTGATGGAAAATGA+TGG - Chr4:89653021-89653040 None:intergenic 30.0%
! ATTTTCCATCAATCCAAACA+TGG + Chr4:89653023-89653042 MsG0480023776.01.T01:intron 30.0%
! CTATCGATTATTTAGGGTTT+GGG - Chr4:89651825-89651844 None:intergenic 30.0%
! CTTTTGATGAAGATAGTAGA+GGG - Chr4:89653459-89653478 None:intergenic 30.0%
! GTAGCTCTATCGATTATTTA+GGG - Chr4:89651831-89651850 None:intergenic 30.0%
! TATCGATTATTTAGGGTTTG+GGG - Chr4:89651824-89651843 None:intergenic 30.0%
! TCTATCGATTATTTAGGGTT+TGG - Chr4:89651826-89651845 None:intergenic 30.0%
! TGATGATGTTGACAATATCA+TGG + Chr4:89655188-89655207 MsG0480023776.01.T01:CDS 30.0%
! TTTTGATGAAGATAGTAGAG+GGG - Chr4:89653458-89653477 None:intergenic 30.0%
!! AAGAGCATTAAAGAGAAAGT+TGG - Chr4:89653692-89653711 None:intergenic 30.0%
!! ACATGTTTTTACAGCAACAA+TGG - Chr4:89653340-89653359 None:intergenic 30.0%
!! TTTGATTTTTGCATCCCTTT+CGG + Chr4:89653580-89653599 MsG0480023776.01.T01:intron 30.0%
!!! AAAGTTTGGTTTTGGATGAA+TGG + Chr4:89652908-89652927 MsG0480023776.01.T01:intron 30.0%
!!! AAGTTTGGTTTTGGATGAAT+GGG + Chr4:89652909-89652928 MsG0480023776.01.T01:intron 30.0%
!!! AATGTACCTAAGTTTTAGGA+AGG + Chr4:89652248-89652267 MsG0480023776.01.T01:intron 30.0%
!!! AGTTTTAGGATCAAAACCAT+AGG + Chr4:89652149-89652168 MsG0480023776.01.T01:intron 30.0%
!!! ATTTTCAAGTGTATAACCGT+AGG + Chr4:89652203-89652222 MsG0480023776.01.T01:intron 30.0%
!!! GGCTATTTTTGGATATCTAA+TGG + Chr4:89652736-89652755 MsG0480023776.01.T01:intron 30.0%
!!! TAATGTTTTTAGCGCTGTAA+CGG + Chr4:89653754-89653773 MsG0480023776.01.T01:intron 30.0%
AAAAAGCCAAAGAATTCACG+AGG + Chr4:89652387-89652406 MsG0480023776.01.T01:intron 35.0%
AAAACTTAGGTACATTGCTC+TGG - Chr4:89652244-89652263 None:intergenic 35.0%
AAAAGCCAAAGAATTCACGA+GGG + Chr4:89652388-89652407 MsG0480023776.01.T01:intron 35.0%
AAAATTTCATCAGGCTTGAC+CGG + Chr4:89653856-89653875 MsG0480023776.01.T01:intron 35.0%
AGTTGACAGAACAATATACG+GGG - Chr4:89654518-89654537 None:intergenic 35.0%
ATCTTCATCAAAAGCAAGAG+AGG + Chr4:89653465-89653484 MsG0480023776.01.T01:intron 35.0%
CAAGTACGAAGTTGAAATGA+CGG - Chr4:89654649-89654668 None:intergenic 35.0%
CAGTTGACAGAACAATATAC+GGG - Chr4:89654519-89654538 None:intergenic 35.0%
CTAATGTTTGCACTCATTCA+TGG + Chr4:89653731-89653750 MsG0480023776.01.T01:intron 35.0%
GATTGAAATTTGCAGCCTTA+AGG - Chr4:89653049-89653068 None:intergenic 35.0%
GCTTGAAATGCTAGAGAAAA+AGG + Chr4:89652328-89652347 MsG0480023776.01.T01:intron 35.0%
GTTGTGTGAGAATGAATAGT+GGG - Chr4:89653810-89653829 None:intergenic 35.0%
TAAGATAGACTTGAGTGGAA+TGG + Chr4:89652778-89652797 MsG0480023776.01.T01:intron 35.0%
TCTTCATCAAAAGCAAGAGA+GGG + Chr4:89653466-89653485 MsG0480023776.01.T01:intron 35.0%
TGTTGTGTGAGAATGAATAG+TGG - Chr4:89653811-89653830 None:intergenic 35.0%
TTAGTGCAGCAAAAACGTAT+GGG - Chr4:89653540-89653559 None:intergenic 35.0%
TTCATGCTCTTGCTCTTAAA+CGG + Chr4:89655136-89655155 MsG0480023776.01.T01:intron 35.0%
TTTGGATATCTAATGGAGAG+TGG + Chr4:89652743-89652762 MsG0480023776.01.T01:intron 35.0%
! ACTATATTTGTTACCGCTAG+TGG + Chr4:89654820-89654839 MsG0480023776.01.T01:intron 35.0%
! AGAGTACCTTCCTAAAACTT+AGG - Chr4:89652257-89652276 None:intergenic 35.0%
! CTATATTTGTTACCGCTAGT+GGG + Chr4:89654821-89654840 MsG0480023776.01.T01:intron 35.0%
! GAGCAATGTACCTAAGTTTT+AGG + Chr4:89652244-89652263 MsG0480023776.01.T01:intron 35.0%
! GCTTTTGATGAAGATAGTAG+AGG - Chr4:89653460-89653479 None:intergenic 35.0%
! GGTAGCTCTATCGATTATTT+AGG - Chr4:89651832-89651851 None:intergenic 35.0%
! GTTTAGGTTTACCAAGAAGT+CGG - Chr4:89651918-89651937 None:intergenic 35.0%
! TGAATGCGTGTGAAAGTTTT+AGG + Chr4:89652135-89652154 MsG0480023776.01.T01:intron 35.0%
! TGAGGTTTTCAGAGGAATAT+TGG - Chr4:89651799-89651818 None:intergenic 35.0%
! TGGAAAATGATGGAAAGTAG+TGG - Chr4:89653011-89653030 None:intergenic 35.0%
! TGTGTTGCAGATGATAATGT+TGG + Chr4:89654896-89654915 MsG0480023776.01.T01:intron 35.0%
! TTGCAGATGATAATGTTGGA+AGG + Chr4:89654900-89654919 MsG0480023776.01.T01:intron 35.0%
!! AGAAAGACTTGGGCTATTTT+TGG + Chr4:89652725-89652744 MsG0480023776.01.T01:intron 35.0%
!! TCAAGTTCTGAAATCGCAAA+AGG - Chr4:89651853-89651872 None:intergenic 35.0%
!! TTTGTGTCGGTTTATGGTTT+CGG + Chr4:89654304-89654323 MsG0480023776.01.T01:intron 35.0%
!!! AGTTTTAGGAAGGTACTCTT+TGG + Chr4:89652258-89652277 MsG0480023776.01.T01:intron 35.0%
!!! GTTTTAGGAAGGTACTCTTT+GGG + Chr4:89652259-89652278 MsG0480023776.01.T01:intron 35.0%
!!! TCCACCTGAACTTTTTTTTC+TGG + Chr4:89654721-89654740 MsG0480023776.01.T01:intron 35.0%
!!! TGAATTTTTTCCTCACACAG+CGG + Chr4:89652539-89652558 MsG0480023776.01.T01:intron 35.0%
!!! TTTTAGGAAGGTACTCTTTG+GGG + Chr4:89652260-89652279 MsG0480023776.01.T01:intron 35.0%
AAATTTCATCAGGCTTGACC+GGG + Chr4:89653857-89653876 MsG0480023776.01.T01:intron 40.0%
AACAGCTGAGGAAGATGAAT+TGG + Chr4:89655537-89655556 MsG0480023776.01.T01:CDS 40.0%
AAGCTATGATGCATAGGTAC+AGG + Chr4:89653201-89653220 MsG0480023776.01.T01:intron 40.0%
ACAGACAGAAAAGATGAGAC+AGG + Chr4:89655224-89655243 MsG0480023776.01.T01:CDS 40.0%
ACGAGGGCGAAAAATAAAAG+GGG + Chr4:89652404-89652423 MsG0480023776.01.T01:intron 40.0%
AGAAAAGATGAGACAGGTTC+AGG + Chr4:89655230-89655249 MsG0480023776.01.T01:CDS 40.0%
AGATGAATTGGCAAAGTTGC+AGG + Chr4:89655549-89655568 MsG0480023776.01.T01:CDS 40.0%
ATAATCATGTTGCCCACTAG+CGG - Chr4:89654836-89654855 None:intergenic 40.0%
ATGATGCATAGGTACAGGTA+CGG + Chr4:89653206-89653225 MsG0480023776.01.T01:intron 40.0%
CACGAGGGCGAAAAATAAAA+GGG + Chr4:89652403-89652422 MsG0480023776.01.T01:intron 40.0%
CTCGTGGGTCAATGATATAT+TGG + Chr4:89652513-89652532 MsG0480023776.01.T01:intron 40.0%
GAAGACAACCTCATCATAGT+CGG - Chr4:89655283-89655302 None:intergenic 40.0%
GCCAGAAAAAAAAGTTCAGG+TGG - Chr4:89654725-89654744 None:intergenic 40.0%
GGAGCCAGAAAAAAAAGTTC+AGG - Chr4:89654728-89654747 None:intergenic 40.0%
GTTAGTGCAGCAAAAACGTA+TGG - Chr4:89653541-89653560 None:intergenic 40.0%
GTTGACAGAACAATATACGG+GGG - Chr4:89654517-89654536 None:intergenic 40.0%
TAAGGCCATGTTTGGATTGA+TGG - Chr4:89653031-89653050 None:intergenic 40.0%
TACACCACTTTGCGAGAATT+TGG - Chr4:89654335-89654354 None:intergenic 40.0%
TAGACTTGAGTGGAATGGAA+TGG + Chr4:89652783-89652802 MsG0480023776.01.T01:intron 40.0%
TCACGAGGGCGAAAAATAAA+AGG + Chr4:89652402-89652421 MsG0480023776.01.T01:intron 40.0%
TCATGCTCTTGCTCTTAAAC+GGG + Chr4:89655137-89655156 MsG0480023776.01.T01:intron 40.0%
TGATCCAAATTCTCGCAAAG+TGG + Chr4:89654328-89654347 MsG0480023776.01.T01:intron 40.0%
TGGAGTTGTAATTGTAGGCT+GGG - Chr4:89655480-89655499 None:intergenic 40.0%
TGTGCTAAGCTATGATGCAT+AGG + Chr4:89653195-89653214 MsG0480023776.01.T01:intron 40.0%
! GTTAAGCATGGTTTTCGACA+TGG - Chr4:89651896-89651915 None:intergenic 40.0%
! GTTTTCCGCAGTTTCAAAAG+TGG + Chr4:89654412-89654431 MsG0480023776.01.T01:intron 40.0%
! TATTTAGGGTTTGGGGATTG+AGG - Chr4:89651817-89651836 None:intergenic 40.0%
! TCAATCCAAACATGGCCTTA+AGG + Chr4:89653031-89653050 MsG0480023776.01.T01:intron 40.0%
! TTGATGGGCAAGGAAAAGTT+TGG + Chr4:89652894-89652913 MsG0480023776.01.T01:intron 40.0%
! TTTTCCTTGCCCATCAAACA+GGG - Chr4:89652891-89652910 None:intergenic 40.0%
!! ACAGTGCTACTTAAAAAGGC+TGG + Chr4:89652353-89652372 MsG0480023776.01.T01:intron 40.0%
!! ACCGGTATCGGTACTTAATA+CGG + Chr4:89653236-89653255 MsG0480023776.01.T01:intron 40.0%
!! CGGTGTTACCTCGTTTAATT+TGG - Chr4:89651968-89651987 None:intergenic 40.0%
!! GGAATATTGGTTCGTGAATG+TGG - Chr4:89651786-89651805 None:intergenic 40.0%
!! GGAGACAGTGCTACTTAAAA+AGG + Chr4:89652349-89652368 MsG0480023776.01.T01:intron 40.0%
!! GGCAAGGAAAAGTTTGGTTT+TGG + Chr4:89652900-89652919 MsG0480023776.01.T01:intron 40.0%
!! TTTAGGAAGGTACTCTTTGG+GGG + Chr4:89652261-89652280 MsG0480023776.01.T01:intron 40.0%
!!! AGAGCACTGACTTTTGGTTT+AGG - Chr4:89651934-89651953 None:intergenic 40.0%
!!! GTATGCCACTTTTGAAACTG+CGG - Chr4:89654420-89654439 None:intergenic 40.0%
!!! GTTTCAAGAGCACTGACTTT+TGG - Chr4:89651940-89651959 None:intergenic 40.0%
ACCAAGAAGTCGGTTAAGCA+TGG - Chr4:89651908-89651927 None:intergenic 45.0%
AGAAGCAGAACTTGAAGAGC+AGG + Chr4:89655436-89655455 MsG0480023776.01.T01:CDS 45.0%
ATTCTCGCAAAGTGGTGTAG+TGG + Chr4:89654336-89654355 MsG0480023776.01.T01:intron 45.0%
CTGGAGTTGTAATTGTAGGC+TGG - Chr4:89655481-89655500 None:intergenic 45.0%
GAAGCAGAACTTGAAGAGCA+GGG + Chr4:89655437-89655456 MsG0480023776.01.T01:CDS 45.0%
GATAATGTTGGAAGGAGCTC+AGG + Chr4:89654908-89654927 MsG0480023776.01.T01:CDS 45.0%
GCTACTTAAAAAGGCTGGAG+CGG + Chr4:89652358-89652377 MsG0480023776.01.T01:intron 45.0%
GCTGCTGGAGTTGTAATTGT+AGG - Chr4:89655485-89655504 None:intergenic 45.0%
GGAGTTGTAATTGTAGGCTG+GGG - Chr4:89655479-89655498 None:intergenic 45.0%
TACATGTCTTCCAGTCTGAC+TGG + Chr4:89654791-89654810 MsG0480023776.01.T01:intron 45.0%
TCAATCTGATTGAAAGGGGG+CGG + Chr4:89653063-89653082 MsG0480023776.01.T01:intron 45.0%
TGCTTCTTCATTGTCTGCCT+GGG - Chr4:89655423-89655442 None:intergenic 45.0%
TGTGTTCACACACCTGATCA+TGG - Chr4:89652638-89652657 None:intergenic 45.0%
TTCTGCTGTTCGGTATGAGA+TGG + Chr4:89653999-89654018 MsG0480023776.01.T01:intron 45.0%
TTTCCTTGCCCATCAAACAG+GGG - Chr4:89652890-89652909 None:intergenic 45.0%
TTTCGCCCTCGTGAATTCTT+TGG - Chr4:89652396-89652415 None:intergenic 45.0%
! ACCATGCTTAACCGACTTCT+TGG + Chr4:89651904-89651923 MsG0480023776.01.T01:CDS 45.0%
! CTTTTCCTTGCCCATCAAAC+AGG - Chr4:89652892-89652911 None:intergenic 45.0%
! TTGGGGATTGAGGTTTTCAG+AGG - Chr4:89651807-89651826 None:intergenic 45.0%
!! AGAGCCATATAAGCACCGAA+AGG - Chr4:89653598-89653617 None:intergenic 45.0%
!! CATCCCTTTCGGTGCTTATA+TGG + Chr4:89653591-89653610 MsG0480023776.01.T01:intron 45.0%
!! CATGATTGATTCGCACACAG+TGG + Chr4:89654188-89654207 MsG0480023776.01.T01:intron 45.0%
!! GAAGCATTGTCAGCTCCAAT+TGG + Chr4:89655252-89655271 MsG0480023776.01.T01:CDS 45.0%
!! GAGCCATATAAGCACCGAAA+GGG - Chr4:89653597-89653616 None:intergenic 45.0%
!! GCCGTATTAAGTACCGATAC+CGG - Chr4:89653240-89653259 None:intergenic 45.0%
!! TAATTTTTACTGGTGGGCCG+TGG - Chr4:89654240-89654259 None:intergenic 45.0%
!! TATTACTGGAGTTGGCTCGT+GGG + Chr4:89652498-89652517 MsG0480023776.01.T01:intron 45.0%
!! TTATTACTGGAGTTGGCTCG+TGG + Chr4:89652497-89652516 MsG0480023776.01.T01:intron 45.0%
!! AATTTAAATAATTCAATTAT+AGG + Chr4:89654369-89654388 MsG0480023776.01.T01:intron 5.0%
!!! AATTGAATTATTTAAATTTT+CGG - Chr4:89654367-89654386 None:intergenic 5.0%
!!! TATATTATAAATAATTTTAG+TGG + Chr4:89654698-89654717 MsG0480023776.01.T01:intron 5.0%
AATTACAACTCCAGCAGCCC+CGG + Chr4:89655487-89655506 MsG0480023776.01.T01:CDS 50.0%
ACCGTAGGAACAGTATCCAG+AGG + Chr4:89652218-89652237 MsG0480023776.01.T01:intron 50.0%
AGCTCAGGCGACTACAGAAA+CGG + Chr4:89654923-89654942 MsG0480023776.01.T01:CDS 50.0%
CACTGTTCGCACAGTTTGAC+TGG + Chr4:89654750-89654769 MsG0480023776.01.T01:intron 50.0%
CAGTCAAACTGTGCGAACAG+TGG - Chr4:89654752-89654771 None:intergenic 50.0%
CATAGGTACAGGTACGGTAC+GGG + Chr4:89653212-89653231 MsG0480023776.01.T01:intron 50.0%
CATTGTATTGCCGCTGTGTG+AGG - Chr4:89652552-89652571 None:intergenic 50.0%
CCAACTGCGTATCCATGATC+AGG + Chr4:89652623-89652642 MsG0480023776.01.T01:intron 50.0%
CCTGATCATGGATACGCAGT+TGG - Chr4:89652626-89652645 None:intergenic 50.0%
CTGCTTCTTCATTGTCTGCC+TGG - Chr4:89655424-89655443 None:intergenic 50.0%
GAACAGCAAGTAGAGCAGCT+TGG + Chr4:89652594-89652613 MsG0480023776.01.T01:intron 50.0%
GCATAGGTACAGGTACGGTA+CGG + Chr4:89653211-89653230 MsG0480023776.01.T01:intron 50.0%
GCCTCTGGATACTGTTCCTA+CGG - Chr4:89652222-89652241 None:intergenic 50.0%
GTGCAGCAAAAACGTATGGG+CGG - Chr4:89653537-89653556 None:intergenic 50.0%
TAGTAGTCTGCCAGTCAGAC+TGG - Chr4:89654804-89654823 None:intergenic 50.0%
TCAAACTGTGCGAACAGTGG+CGG - Chr4:89654749-89654768 None:intergenic 50.0%
TCCAGTCTCCCCTGTTTGAT+GGG + Chr4:89652879-89652898 MsG0480023776.01.T01:intron 50.0%
TGCAGCCTTAAGGCCATGTT+TGG - Chr4:89653039-89653058 None:intergenic 50.0%
! ACGGTTGATGCGTTGAGAAC+TGG + Chr4:89654942-89654961 MsG0480023776.01.T01:CDS 50.0%
! CGCACAGTTTGACTGGTCAT+GGG + Chr4:89654757-89654776 MsG0480023776.01.T01:intron 50.0%
! TCGCACAGTTTGACTGGTCA+TGG + Chr4:89654756-89654775 MsG0480023776.01.T01:intron 50.0%
!! GATTGATTCGCACACAGTGG+CGG + Chr4:89654191-89654210 MsG0480023776.01.T01:intron 50.0%
AGCCCTTAATGGGATGGGGT+GGG + Chr4:89654214-89654233 MsG0480023776.01.T01:intron 55.0%
AGGTACATTGCTCTGGCCTC+TGG - Chr4:89652237-89652256 None:intergenic 55.0%
CAACCACTGTGCAACAGCTG+AGG + Chr4:89655525-89655544 MsG0480023776.01.T01:CDS 55.0%
CAGCAAAAACGTATGGGCGG+TGG - Chr4:89653534-89653553 None:intergenic 55.0%
CAGGGGAGACTGGAGTAAAC+AGG - Chr4:89652873-89652892 None:intergenic 55.0%
CGCGAGTGTCTCAAGTATGC+AGG - Chr4:89653162-89653181 None:intergenic 55.0%
CTCCAGTCTCCCCTGTTTGA+TGG + Chr4:89652878-89652897 MsG0480023776.01.T01:intron 55.0%
CTTCCTCAGCTGTTGCACAG+TGG - Chr4:89655531-89655550 None:intergenic 55.0%
GCTGAGATGGCACTTTGAGC+AGG + Chr4:89655571-89655590 MsG0480023776.01.T01:CDS 55.0%
GGCAAAGTTGCAGGCTGAGA+TGG + Chr4:89655558-89655577 MsG0480023776.01.T01:CDS 55.0%
TACAGGTACGGTACGGGTAC+CGG + Chr4:89653218-89653237 MsG0480023776.01.T01:intron 55.0%
TCATAGTCGGCTGCGCCAAT+TGG - Chr4:89655270-89655289 None:intergenic 55.0%
! ACAGTGGCGGAGCCCTTAAT+GGG + Chr4:89654204-89654223 MsG0480023776.01.T01:intron 55.0%
! TCTCCCCTGTTTGATGGGCA+AGG + Chr4:89652884-89652903 MsG0480023776.01.T01:intron 55.0%
!! TACGGTACGGGTACCGGTAT+CGG + Chr4:89653224-89653243 MsG0480023776.01.T01:intron 55.0%
!! TGAAGAGCAGGGTGCTGAGT+TGG + Chr4:89655448-89655467 MsG0480023776.01.T01:CDS 55.0%
GAGCCCTTAATGGGATGGGG+TGG + Chr4:89654213-89654232 MsG0480023776.01.T01:intron 60.0%
GCCCATCAAACAGGGGAGAC+TGG - Chr4:89652883-89652902 None:intergenic 60.0%
GCGGAGCCCTTAATGGGATG+GGG + Chr4:89654210-89654229 MsG0480023776.01.T01:intron 60.0%
GGCCCACCCCATCCCATTAA+GGG - Chr4:89654219-89654238 None:intergenic 60.0%
GGCGGAGCCCTTAATGGGAT+GGG + Chr4:89654209-89654228 MsG0480023776.01.T01:intron 60.0%
GTTGTTGCTGCCCACAGCAC+CGG - Chr4:89655509-89655528 None:intergenic 60.0%
TAATGGGATGGGGTGGGCCA+CGG + Chr4:89654220-89654239 MsG0480023776.01.T01:intron 60.0%
TGGCCCACCCCATCCCATTA+AGG - Chr4:89654220-89654239 None:intergenic 60.0%
TGGCGCAGCCGACTATGATG+AGG + Chr4:89655272-89655291 MsG0480023776.01.T01:CDS 60.0%
TGGCGGAGCCCTTAATGGGA+TGG + Chr4:89654208-89654227 MsG0480023776.01.T01:intron 60.0%
TTGTTGCTGCCCACAGCACC+GGG - Chr4:89655508-89655527 None:intergenic 60.0%
! CACAGTGGCGGAGCCCTTAA+TGG + Chr4:89654203-89654222 MsG0480023776.01.T01:intron 60.0%
TGTTGCTGCCCACAGCACCG+GGG - Chr4:89655507-89655526 None:intergenic 65.0%
!! TCCAGCAGCCCCGGTGCTGT+GGG + Chr4:89655496-89655515 MsG0480023776.01.T01:CDS 70.0%
! CTCCAGCAGCCCCGGTGCTG+TGG + Chr4:89655495-89655514 MsG0480023776.01.T01:CDS 75.0%
!! GCCCACAGCACCGGGGCTGC+TGG - Chr4:89655500-89655519 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89651754 89655601 89651754 ID=MsG0480023776.01;Name=MsG0480023776.01
Chr4 mRNA 89651754 89655601 89651754 ID=MsG0480023776.01.T01;Parent=MsG0480023776.01;Name=MsG0480023776.01.T01;_AED=0.44;_eAED=0.45;_QI=141|0.66|0.75|1|1|1|4|0|154
Chr4 exon 89651754 89651978 89651754 ID=MsG0480023776.01.T01:exon:33625;Parent=MsG0480023776.01.T01
Chr4 exon 89654906 89654997 89654906 ID=MsG0480023776.01.T01:exon:33626;Parent=MsG0480023776.01.T01
Chr4 exon 89655182 89655293 89655182 ID=MsG0480023776.01.T01:exon:33627;Parent=MsG0480023776.01.T01
Chr4 exon 89655425 89655601 89655425 ID=MsG0480023776.01.T01:exon:33628;Parent=MsG0480023776.01.T01
Chr4 five_prime_UTR 89651754 89651894 89651754 ID=MsG0480023776.01.T01:five_prime_utr;Parent=MsG0480023776.01.T01
Chr4 CDS 89651895 89651978 89651895 ID=MsG0480023776.01.T01:cds;Parent=MsG0480023776.01.T01
Chr4 CDS 89654906 89654997 89654906 ID=MsG0480023776.01.T01:cds;Parent=MsG0480023776.01.T01
Chr4 CDS 89655182 89655293 89655182 ID=MsG0480023776.01.T01:cds;Parent=MsG0480023776.01.T01
Chr4 CDS 89655425 89655601 89655425 ID=MsG0480023776.01.T01:cds;Parent=MsG0480023776.01.T01
Gene Sequence

>MsG0480023776.01.T01

ATGTCGAAAACCATGCTTAACCGACTTCTTGGTAAACCTAAACCAAAAGTCAGTGCTCTTGAAACTATAGCCAAATTAAACGAGATGATAATGTTGGAAGGAGCTCAGGCGACTACAGAAACGGTTGATGCGTTGAGAACTGGAGCATTTGCTATGAAGCGCATGCAAAAAGATTTCAATCTTGATGATGTTGACAATATCATGGATGAGATCACTGAACAGACAGAAAAGATGAGACAGGTTCAGGAAGCATTGTCAGCTCCAATTGGCGCAGCCGACTATGATGAGGCAGACAATGAAGAAGCAGAACTTGAAGAGCAGGGTGCTGAGTTGGAAGAACCCCAGCCTACAATTACAACTCCAGCAGCCCCGGTGCTGTGGGCAGCAACAACCACTGTGCAACAGCTGAGGAAGATGAATTGGCAAAGTTGCAGGCTGAGATGGCACTTTGAGCAGGTTCCATAA

Protein sequence

>MsG0480023776.01.T01

MSKTMLNRLLGKPKPKVSALETIAKLNEMIMLEGAQATTETVDALRTGAFAMKRMQKDFNLDDVDNIMDEITEQTEKMRQVQEALSAPIGAADYDEADNEEAELEEQGAELEEPQPTITTPAAPVLWAATTTVQQLRKMNWQSCRLRWHFEQVP*