AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015577.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015577.01.T01 MTR_3g072840 85.426 446 28 4 4 414 1 444 0.0 716
MsG0380015577.01.T01 MTR_3g072830 49.111 450 177 11 4 410 1 441 1.98e-124 368
MsG0380015577.01.T01 MTR_3g007470 56.857 350 114 4 99 414 36 382 2.78e-120 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015577.01.T01 AT2G41705 45.688 429 182 10 25 411 36 455 6.21e-93 287
MsG0380015577.01.T01 AT2G41705 45.688 429 182 10 25 411 36 455 6.21e-93 287
MsG0380015577.01.T01 AT2G41705 45.688 429 182 10 25 411 36 455 6.21e-93 287
MsG0380015577.01.T01 AT2G41705 45.688 429 182 10 25 411 36 455 6.21e-93 287

Find 90 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGACTTCAATTTGGTCTAT+TGG 0.243981 3:-72039404 MsG0380015577.01.T01:CDS
TGTCGATCATCATTGGTTTC+TGG 0.244597 3:-72040038 MsG0380015577.01.T01:CDS
TACCTATTTGTTTGGGTGTT+TGG 0.268786 3:-72039208 MsG0380015577.01.T01:three_prime_UTR
TGGTGATATTAGCTTTGTTA+TGG 0.283155 3:-72039888 MsG0380015577.01.T01:CDS
CCCATCTTTGTTTCAACAAA+TGG 0.286309 3:-72041709 MsG0380015577.01.T01:CDS
GCCTGCATTGTTGGACCTCT+TGG 0.293298 3:-72039796 MsG0380015577.01.T01:CDS
GTTGGAAGAGATATTATATT+AGG 0.293744 3:-72039108 MsG0380015577.01.T01:three_prime_UTR
AGACTTAACGAGTGCGAAAT+TGG 0.297010 3:-72039745 MsG0380015577.01.T01:CDS
CTCAATCACATTCTTGAAAC+AGG 0.298737 3:+72039244 None:intergenic
TGATAGAAAACAAGCATCTT+TGG 0.307803 3:-72039336 MsG0380015577.01.T01:CDS
GGATTATGTACCTATTTGTT+TGG 0.307962 3:-72039216 MsG0380015577.01.T01:three_prime_UTR
GGACTTCAATTTGGTCTATT+GGG 0.318154 3:-72039403 MsG0380015577.01.T01:CDS
ACAATATAGTTATTATTAGA+TGG 0.318561 3:+72041751 None:intergenic
TTATATATCAAACCAGAAAA+TGG 0.319807 3:-72041814 MsG0380015577.01.T01:CDS
GTGATAACAGGACTTCAATT+TGG 0.320323 3:-72039412 MsG0380015577.01.T01:CDS
ACCAAACCATCCCATCAAAA+AGG 0.332116 3:+72040486 None:intergenic
GGTGATATTAGCTTTGTTAT+GGG 0.342133 3:-72039887 MsG0380015577.01.T01:CDS
GATTATGTACCTATTTGTTT+GGG 0.342788 3:-72039215 MsG0380015577.01.T01:three_prime_UTR
GGCAATTCATGTTCCATTGC+AGG 0.342935 3:+72041775 None:intergenic
CACTGGATCTTGTCTTTGCT+CGG 0.345396 3:-72040334 MsG0380015577.01.T01:CDS
ATCACTATGTTTCTTTCTAT+AGG 0.370649 3:+72042075 None:intergenic
TGTTTCGTGTCTAACTCATT+TGG 0.377439 3:-72041503 MsG0380015577.01.T01:CDS
TTGTTGGACCTCTTGGTGTA+TGG 0.380313 3:-72039789 MsG0380015577.01.T01:CDS
GAATTTGTTGGGTCTGAGTT+AGG 0.382110 3:-72039133 MsG0380015577.01.T01:three_prime_UTR
GACCTCTTGGTGTATGGCTT+AGG 0.383143 3:-72039783 MsG0380015577.01.T01:CDS
TCCATTTGTTGAAACAAAGA+TGG 0.386494 3:+72041708 None:intergenic
GGTCTAACAACCGGCTACTT+AGG 0.389772 3:-72040415 MsG0380015577.01.T01:CDS
TCTTTGCTCGGCTTTGTACT+AGG 0.391256 3:-72040322 MsG0380015577.01.T01:intron
AATTGTGATACTGTGATAAC+AGG 0.402053 3:-72039424 MsG0380015577.01.T01:CDS
CAAGAATGTGATTGAGCATA+GGG 0.419367 3:-72039237 MsG0380015577.01.T01:exon
AGCCAAACACCCAAACAAAT+AGG 0.425540 3:+72039206 None:intergenic
TGACAGCTTCCTTCGTCAAT+TGG 0.430603 3:-72039929 MsG0380015577.01.T01:CDS
AAAACTTACTGATTTCTTGA+GGG 0.431062 3:+72039642 None:intergenic
GTTGGGGTTCTGCAGTTAGC+AGG 0.434224 3:-72041963 MsG0380015577.01.T01:CDS
CGTGAGTGTGGTTCAGCTGC+AGG 0.439210 3:-72041892 MsG0380015577.01.T01:CDS
CATGGAGCGAACGAGCAGTT+GGG 0.449685 3:-72041980 MsG0380015577.01.T01:CDS
GCCTAACAACTTTCAGCGGC+TGG 0.451556 3:-72040390 MsG0380015577.01.T01:CDS
TCCAGCCGCTGAAAGTTGTT+AGG 0.453775 3:+72040389 None:intergenic
CTGGTTTGATATATAAAGAC+AGG 0.458399 3:+72041821 None:intergenic
GTAGCATTGTCGATCATCAT+TGG 0.460693 3:-72040045 MsG0380015577.01.T01:CDS
TTGTGGTTAGCCTGCATTGT+TGG 0.460887 3:-72039805 MsG0380015577.01.T01:CDS
ATGCTCGAGCTCAGTGTCGC+TGG 0.460917 3:-72040358 MsG0380015577.01.T01:CDS
CGAAACAAATTCCAGTAGCT+TGG 0.472897 3:+72041519 None:intergenic
GTCTAACAACCGGCTACTTA+GGG 0.474314 3:-72040414 MsG0380015577.01.T01:CDS
CTAGCCATTGGTCTAACAAC+CGG 0.476478 3:-72040424 MsG0380015577.01.T01:CDS
CCATTTGTTGAAACAAAGAT+GGG 0.480162 3:+72041709 None:intergenic
AGCTCAGTGTCGCTGGACAC+TGG 0.485522 3:-72040351 MsG0380015577.01.T01:CDS
ATGGGGTGTGAGTAGTGCTT+TGG 0.485675 3:-72039869 MsG0380015577.01.T01:CDS
CATGAAGTTACCCAAGCTAC+TGG 0.489022 3:-72041530 MsG0380015577.01.T01:CDS
TGTACAATAGTGAATTTGTT+GGG 0.492567 3:-72039144 MsG0380015577.01.T01:three_prime_UTR
TTGGGTCTGAGTTAGGAAGT+TGG 0.493066 3:-72039126 MsG0380015577.01.T01:three_prime_UTR
GAGAGCATTTGTCTATGCTA+TGG 0.494452 3:-72039314 MsG0380015577.01.T01:CDS
GGTAGTGATCATAGTGTTGT+TGG 0.497849 3:-72039908 MsG0380015577.01.T01:CDS
AAAAGAAAATGAAACGCAAA+TGG 0.498184 3:+72039288 None:intergenic
CCAACTGCTCGTTCGCTCCA+TGG 0.502807 3:+72041981 None:intergenic
GAAACAAATTCCAGTAGCTT+GGG 0.506298 3:+72041520 None:intergenic
CCATGGAGCGAACGAGCAGT+TGG 0.508369 3:-72041981 MsG0380015577.01.T01:CDS
CTTTGTTTCAACAAATGGAA+AGG 0.511711 3:-72041704 MsG0380015577.01.T01:CDS
CATTGGTTTCTGGACGGCGA+AGG 0.512919 3:-72040028 MsG0380015577.01.T01:CDS
GTGATATTAGCTTTGTTATG+GGG 0.520721 3:-72039886 MsG0380015577.01.T01:CDS
AACGAGTGCGAAATTGGAGG+AGG 0.526946 3:-72039739 MsG0380015577.01.T01:CDS
GGAGGAAGGAAAAGTGAGAG+TGG 0.527956 3:-72041853 MsG0380015577.01.T01:CDS
TTGTACAATAGTGAATTTGT+TGG 0.531782 3:-72039145 MsG0380015577.01.T01:three_prime_UTR
GTATCTGAACATCTAGCCAT+TGG 0.532584 3:-72040436 MsG0380015577.01.T01:CDS
TCAAGAATGTGATTGAGCAT+AGG 0.536915 3:-72039238 MsG0380015577.01.T01:exon
ATTGGTTTCTGGACGGCGAA+GGG 0.538719 3:-72040027 MsG0380015577.01.T01:CDS
TGTTTCTGCTGCTTGTATCA+CGG 0.540208 3:-72039677 MsG0380015577.01.T01:CDS
GGACGGCGAAGGGATTCAAA+TGG 0.542568 3:-72040017 MsG0380015577.01.T01:CDS
ACCAAGAGGTCCAACAATGC+AGG 0.546644 3:+72039795 None:intergenic
ACTTACTGATTTCTTGAGGG+TGG 0.554227 3:+72039645 None:intergenic
TGTTAGGCTCCCTAAGTAGC+CGG 0.558390 3:+72040405 None:intergenic
GGCTAGATGTTCAGATACAT+AGG 0.562753 3:+72040441 None:intergenic
TATATCGAAACTAAGCTGGA+AGG 0.568673 3:-72039953 MsG0380015577.01.T01:CDS
GGAAGGAAAAGTGAGAGTGG+TGG 0.583294 3:-72041850 MsG0380015577.01.T01:CDS
GATACAAGCAGCAGAAACAT+TGG 0.593081 3:+72039681 None:intergenic
CTTAACGAGTGCGAAATTGG+AGG 0.610168 3:-72039742 MsG0380015577.01.T01:CDS
ACGAGTGCGAAATTGGAGGA+GGG 0.618522 3:-72039738 MsG0380015577.01.T01:CDS
AAGATGGGAATGTGTTCTTG+TGG 0.620426 3:+72041724 None:intergenic
ATTTGTGTACAATCCTGCAA+TGG 0.626316 3:-72041788 MsG0380015577.01.T01:CDS
GGGAGCCTAACAACTTTCAG+CGG 0.627758 3:-72040394 MsG0380015577.01.T01:CDS
ATGGAGCGAACGAGCAGTTG+GGG 0.627866 3:-72041979 MsG0380015577.01.T01:CDS
AACCTAAGCCATACACCAAG+AGG 0.629036 3:+72039781 None:intergenic
GATCATCATTGGTTTCTGGA+CGG 0.641979 3:-72040034 MsG0380015577.01.T01:CDS
GTAGCCGGTTGTTAGACCAA+TGG 0.643579 3:+72040420 None:intergenic
TCAATCACATTCTTGAAACA+GGG 0.655971 3:+72039245 None:intergenic
ATATAGTTATTATTAGATGG+CGG 0.673569 3:+72041754 None:intergenic
GTGTGTCAAAATGTAGATGT+TGG 0.674681 3:-72041934 MsG0380015577.01.T01:CDS
GTGGTGGTGAAGCTCAGTTG+TGG 0.682288 3:-72039822 MsG0380015577.01.T01:CDS
GTAGCTGAGAATCGTGAGTG+TGG 0.696212 3:-72041904 MsG0380015577.01.T01:CDS
TGATCACTACCAATTGACGA+AGG 0.724697 3:+72039920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAGTTATTATTAGA+TGG + Chr3:72039427-72039446 None:intergenic 15.0%
!! ATAATTCCTAAGATTAAAAA+TGG - Chr3:72040439-72040458 MsG0380015577.01.T01:CDS 15.0%
!! TAATATTTCAAAATAGTCTA+TGG - Chr3:72041614-72041633 MsG0380015577.01.T01:intron 15.0%
!! TATATCATTAACAACAAAAA+AGG + Chr3:72039541-72039560 None:intergenic 15.0%
!! TTTAATAAAATGCATTTGAT+AGG + Chr3:72040595-72040614 None:intergenic 15.0%
!!! TTTATTTCTTTGAATTCTAA+AGG - Chr3:72040199-72040218 MsG0380015577.01.T01:intron 15.0%
!! AATTGTCATAATAAATATGC+AGG - Chr3:72040043-72040062 MsG0380015577.01.T01:CDS 20.0%
!! AATTTCAACAACAAATTAGA+CGG - Chr3:72039858-72039877 MsG0380015577.01.T01:CDS 20.0%
!! AGAAAGAAAAAAAAAACTCA+AGG + Chr3:72039744-72039763 None:intergenic 20.0%
!! ATATAGTTATTATTAGATGG+CGG + Chr3:72039424-72039443 None:intergenic 20.0%
!! ATGTGTTAAATTATGTTTAG+TGG - Chr3:72039895-72039914 MsG0380015577.01.T01:CDS 20.0%
!! GAAATAAATGAGTTCAAAAA+TGG - Chr3:72041328-72041347 MsG0380015577.01.T01:intron 20.0%
!! TAAAAGGAGAAAAATAATCA+TGG - Chr3:72040226-72040245 MsG0380015577.01.T01:intron 20.0%
!! TACTTATTGCAAAAATCATT+TGG - Chr3:72040077-72040096 MsG0380015577.01.T01:intron 20.0%
!! TGATTAATGAATATAACTAG+TGG - Chr3:72039919-72039938 MsG0380015577.01.T01:CDS 20.0%
!! TGCATATTTATTATGACAAT+TGG + Chr3:72040044-72040063 None:intergenic 20.0%
!! TTATATATCAAACCAGAAAA+TGG - Chr3:72039361-72039380 MsG0380015577.01.T01:CDS 20.0%
!!! AAGTTCTTTTATATCTTTTG+AGG - Chr3:72039167-72039186 MsG0380015577.01.T01:three_prime_UTR 20.0%
!!! ATAGTTCCATTTTTAATCTT+AGG + Chr3:72040448-72040467 None:intergenic 20.0%
!!! ATGCTTTTACTTTGTTTTTT+AGG - Chr3:72039609-72039628 MsG0380015577.01.T01:intron 20.0%
!!! ATGTTAGTAAATTTAGAGTA+TGG - Chr3:72040262-72040281 MsG0380015577.01.T01:intron 20.0%
!!! TTTGCTCTTTTTATTTTAGA+AGG - Chr3:72039140-72039159 MsG0380015577.01.T01:three_prime_UTR 20.0%
! AAAAGAAAATGAAACGCAAA+TGG + Chr3:72041890-72041909 None:intergenic 25.0%
! AAAGCAATTCAAGTCTTTAT+TGG - Chr3:72040332-72040351 MsG0380015577.01.T01:CDS 25.0%
! AAATAATCATGGTAGCTATA+AGG - Chr3:72040237-72040256 MsG0380015577.01.T01:intron 25.0%
! ATAAATGAGTTCAAAAATGG+TGG - Chr3:72041331-72041350 MsG0380015577.01.T01:intron 25.0%
! ATCACTATGTTTCTTTCTAT+AGG + Chr3:72039103-72039122 None:intergenic 25.0%
! CATATTAAGAAGAGTTTGTA+AGG - Chr3:72041080-72041099 MsG0380015577.01.T01:intron 25.0%
! GATTATGTACCTATTTGTTT+GGG - Chr3:72041960-72041979 MsG0380015577.01.T01:CDS 25.0%
! GGAAATATGTTAAATGAGTT+TGG - Chr3:72039808-72039827 MsG0380015577.01.T01:CDS 25.0%
! GTTGGAAGAGATATTATATT+AGG - Chr3:72042067-72042086 MsG0380015577.01.T01:five_prime_UTR 25.0%
! TAATGAATATAACTAGTGGA+TGG - Chr3:72039923-72039942 MsG0380015577.01.T01:CDS 25.0%
! TTATCATGATGACTAAATCT+TGG - Chr3:72040285-72040304 MsG0380015577.01.T01:intron 25.0%
! TTGTACAATAGTGAATTTGT+TGG - Chr3:72042030-72042049 MsG0380015577.01.T01:intron 25.0%
! TTTCTTGATGTTAAAGAGTA+TGG - Chr3:72039776-72039795 MsG0380015577.01.T01:CDS 25.0%
!! ATTGCTATAAACCTGATTTT+TGG - Chr3:72041711-72041730 MsG0380015577.01.T01:CDS 25.0%
!! ATTTGCGTTTCATTTTCTTT+TGG - Chr3:72041889-72041908 MsG0380015577.01.T01:CDS 25.0%
!! GAATTCTAAAGGAGAATAAA+AGG - Chr3:72040210-72040229 MsG0380015577.01.T01:intron 25.0%
!! GAATTTTTGACACATGATTT+TGG - Chr3:72041674-72041693 MsG0380015577.01.T01:intron 25.0%
!! TGTACAATAGTGAATTTGTT+GGG - Chr3:72042031-72042050 MsG0380015577.01.T01:intron 25.0%
!! TTTGCGTTTCATTTTCTTTT+GGG - Chr3:72041890-72041909 MsG0380015577.01.T01:CDS 25.0%
!!! AAAAACTTACTGATTTCTTG+AGG + Chr3:72041537-72041556 None:intergenic 25.0%
!!! AAAACTTACTGATTTCTTGA+GGG + Chr3:72041536-72041555 None:intergenic 25.0%
!!! ACTTCTATTTTTGCTTTCTT+AGG - Chr3:72040546-72040565 MsG0380015577.01.T01:intron 25.0%
!!! TGGTTTGGTTTTGTTTTTAA+AGG - Chr3:72040703-72040722 MsG0380015577.01.T01:intron 25.0%
!!! TTACTTTGTTTTTTAGGTTC+TGG - Chr3:72039615-72039634 MsG0380015577.01.T01:intron 25.0%
AAGAAGAGTTTGTAAGGAAA+TGG - Chr3:72041086-72041105 MsG0380015577.01.T01:intron 30.0%
AATTGTGATACTGTGATAAC+AGG - Chr3:72041751-72041770 MsG0380015577.01.T01:CDS 30.0%
ATAAGTGCGATTTAAAGACT+AGG - Chr3:72040878-72040897 MsG0380015577.01.T01:intron 30.0%
GGATTATGTACCTATTTGTT+TGG - Chr3:72041959-72041978 MsG0380015577.01.T01:CDS 30.0%
TCAATCACATTCTTGAAACA+GGG + Chr3:72041933-72041952 None:intergenic 30.0%
TGATAGAAAACAAGCATCTT+TGG - Chr3:72041839-72041858 MsG0380015577.01.T01:CDS 30.0%
TGTGAAGACATAAAACAAGT+AGG - Chr3:72039499-72039518 MsG0380015577.01.T01:intron 30.0%
TTGCTTTCTTAGGATCAATA+TGG - Chr3:72040556-72040575 MsG0380015577.01.T01:intron 30.0%
! AAATTGTACTAGTTTCCTCA+CGG - Chr3:72039579-72039598 MsG0380015577.01.T01:intron 30.0%
! CCATTTGTTGAAACAAAGAT+GGG + Chr3:72039469-72039488 None:intergenic 30.0%
! CTGGTTTGATATATAAAGAC+AGG + Chr3:72039357-72039376 None:intergenic 30.0%
! CTTTGTTTCAACAAATGGAA+AGG - Chr3:72039471-72039490 MsG0380015577.01.T01:intron 30.0%
! CTTTTACACATTTTCCAGAT+TGG - Chr3:72040664-72040683 MsG0380015577.01.T01:intron 30.0%
! CTTTTATATCGAAACTAAGC+TGG - Chr3:72041218-72041237 MsG0380015577.01.T01:intron 30.0%
! GTAAGGAAATGGAATTTTGT+AGG - Chr3:72041097-72041116 MsG0380015577.01.T01:intron 30.0%
! TACACAAATGTTCCATTTTC+TGG + Chr3:72039376-72039395 None:intergenic 30.0%
! TCCATTTGTTGAAACAAAGA+TGG + Chr3:72039470-72039489 None:intergenic 30.0%
! TCTAATCTCATTTTACAGCA+TGG + Chr3:72041027-72041046 None:intergenic 30.0%
! TTTTTGACACATGATTTTGG+AGG - Chr3:72041677-72041696 MsG0380015577.01.T01:intron 30.0%
!! ACTTGAATTGCTTTTCAATC+AGG + Chr3:72040326-72040345 None:intergenic 30.0%
!! GGTGATATTAGCTTTGTTAT+GGG - Chr3:72041288-72041307 MsG0380015577.01.T01:intron 30.0%
!! GTGATATTAGCTTTGTTATG+GGG - Chr3:72041289-72041308 MsG0380015577.01.T01:intron 30.0%
!! TGGTGATATTAGCTTTGTTA+TGG - Chr3:72041287-72041306 MsG0380015577.01.T01:intron 30.0%
!!! TTTTGAAATGGCTTCGATTT+GGG - Chr3:72041461-72041480 MsG0380015577.01.T01:intron 30.0%
!!! TTTTTGAAATGGCTTCGATT+TGG - Chr3:72041460-72041479 MsG0380015577.01.T01:intron 30.0%
AAAATGGAACTATCTGTTCC+AGG - Chr3:72040455-72040474 MsG0380015577.01.T01:CDS 35.0%
AATGAGTTCAAAAATGGTGG+TGG - Chr3:72041334-72041353 MsG0380015577.01.T01:intron 35.0%
AGGACTTCAATTTGGTCTAT+TGG - Chr3:72041771-72041790 MsG0380015577.01.T01:CDS 35.0%
ATTTGTGTACAATCCTGCAA+TGG - Chr3:72039387-72039406 MsG0380015577.01.T01:CDS 35.0%
CAAAAATCATTTGGACCAAG+TGG - Chr3:72040086-72040105 MsG0380015577.01.T01:intron 35.0%
CAAGAATGTGATTGAGCATA+GGG - Chr3:72041938-72041957 MsG0380015577.01.T01:CDS 35.0%
CTACTCGACGCAATTAAATT+AGG - Chr3:72039982-72040001 MsG0380015577.01.T01:CDS 35.0%
CTCAATCACATTCTTGAAAC+AGG + Chr3:72041934-72041953 None:intergenic 35.0%
GAAACAAATTCCAGTAGCTT+GGG + Chr3:72039658-72039677 None:intergenic 35.0%
GCTGCATTAACTAACATGTT+TGG - Chr3:72040359-72040378 MsG0380015577.01.T01:CDS 35.0%
GGACTTCAATTTGGTCTATT+GGG - Chr3:72041772-72041791 MsG0380015577.01.T01:CDS 35.0%
GTAAAAAACGGTATGATCAC+TGG + Chr3:72040123-72040142 None:intergenic 35.0%
GTGATAACAGGACTTCAATT+TGG - Chr3:72041763-72041782 MsG0380015577.01.T01:CDS 35.0%
GTGTGTCAAAATGTAGATGT+TGG - Chr3:72039241-72039260 MsG0380015577.01.T01:exon 35.0%
TAAATATGCAGGTCTTAACG+AGG - Chr3:72040054-72040073 MsG0380015577.01.T01:CDS 35.0%
TAAGAATCAGTGAATGCAGA+AGG + Chr3:72040177-72040196 None:intergenic 35.0%
TACCTATTTGTTTGGGTGTT+TGG - Chr3:72041967-72041986 MsG0380015577.01.T01:CDS 35.0%
TATATCGAAACTAAGCTGGA+AGG - Chr3:72041222-72041241 MsG0380015577.01.T01:intron 35.0%
TCAAGAATGTGATTGAGCAT+AGG - Chr3:72041937-72041956 MsG0380015577.01.T01:CDS 35.0%
TGGCAGATCAAGGTAAAAAA+CGG + Chr3:72040135-72040154 None:intergenic 35.0%
TGTTTCGTGTCTAACTCATT+TGG - Chr3:72039672-72039691 MsG0380015577.01.T01:CDS 35.0%
! CCCATCTTTGTTTCAACAAA+TGG - Chr3:72039466-72039485 MsG0380015577.01.T01:intron 35.0%
! TAAAGAGTATGGTAGATGCT+AGG - Chr3:72039787-72039806 MsG0380015577.01.T01:CDS 35.0%
!! AAGTTTTATCATGTGTGCTC+TGG - Chr3:72042007-72042026 MsG0380015577.01.T01:intron 35.0%
!! ATATAGCTTTTCAAGGAGGA+AGG - Chr3:72039308-72039327 MsG0380015577.01.T01:CDS 35.0%
!! CAGATTGGTTCCTTTTTGAT+GGG - Chr3:72040679-72040698 MsG0380015577.01.T01:intron 35.0%
!! CTAACTCATTTGGCTGTTTT+TGG - Chr3:72039682-72039701 MsG0380015577.01.T01:CDS 35.0%
!!! ATAAACCTGATTTTTGGTGC+AGG - Chr3:72041717-72041736 MsG0380015577.01.T01:CDS 35.0%
AAGATGGGAATGTGTTCTTG+TGG + Chr3:72039454-72039473 None:intergenic 40.0%
AATGCTTCAAGCTCAAAACC+TGG + Chr3:72040476-72040495 None:intergenic 40.0%
ACCAAACCATCCCATCAAAA+AGG + Chr3:72040692-72040711 None:intergenic 40.0%
AGACTTAACGAGTGCGAAAT+TGG - Chr3:72041430-72041449 MsG0380015577.01.T01:intron 40.0%
AGCCAAACACCCAAACAAAT+AGG + Chr3:72041972-72041991 None:intergenic 40.0%
ATTCACCTGCACCAAAAATC+AGG + Chr3:72041725-72041744 None:intergenic 40.0%
CCATCAAAAAGGAACCAATC+TGG + Chr3:72040681-72040700 None:intergenic 40.0%
CCTTGATCTGCCATCAAATA+TGG - Chr3:72040142-72040161 MsG0380015577.01.T01:intron 40.0%
CGAAACAAATTCCAGTAGCT+TGG + Chr3:72039659-72039678 None:intergenic 40.0%
CGACGCAATTAAATTAGGAG+AGG - Chr3:72039987-72040006 MsG0380015577.01.T01:CDS 40.0%
GATACAAGCAGCAGAAACAT+TGG + Chr3:72041497-72041516 None:intergenic 40.0%
GGCTAGATGTTCAGATACAT+AGG + Chr3:72040737-72040756 None:intergenic 40.0%
GGTAGTGATCATAGTGTTGT+TGG - Chr3:72041267-72041286 MsG0380015577.01.T01:intron 40.0%
GTAGCATTGTCGATCATCAT+TGG - Chr3:72041130-72041149 MsG0380015577.01.T01:intron 40.0%
GTATCTGAACATCTAGCCAT+TGG - Chr3:72040739-72040758 MsG0380015577.01.T01:intron 40.0%
TGATCACTACCAATTGACGA+AGG + Chr3:72041258-72041277 None:intergenic 40.0%
TGCGTCGAGTAGATGATTAA+TGG + Chr3:72039974-72039993 None:intergenic 40.0%
! CCATATTTGATGGCAGATCA+AGG + Chr3:72040145-72040164 None:intergenic 40.0%
! GCAGGAGATATAGCTTTTCA+AGG - Chr3:72039301-72039320 MsG0380015577.01.T01:CDS 40.0%
! TCATTTGGACCAAGTGGTTT+TGG - Chr3:72040092-72040111 MsG0380015577.01.T01:intron 40.0%
! TCCTTTTTGATGGGATGGTT+TGG - Chr3:72040688-72040707 MsG0380015577.01.T01:intron 40.0%
! TGTTTCTGCTGCTTGTATCA+CGG - Chr3:72041498-72041517 MsG0380015577.01.T01:CDS 40.0%
! TTGGTTCCTTTTTGATGGGA+TGG - Chr3:72040683-72040702 MsG0380015577.01.T01:intron 40.0%
!! ACTTACTGATTTCTTGAGGG+TGG + Chr3:72041533-72041552 None:intergenic 40.0%
!! ATATCTTTTGAGGATCGCCA+TGG - Chr3:72039177-72039196 MsG0380015577.01.T01:three_prime_UTR 40.0%
!! CCAGATTGGTTCCTTTTTGA+TGG - Chr3:72040678-72040697 MsG0380015577.01.T01:intron 40.0%
!! GAATTTGTTGGGTCTGAGTT+AGG - Chr3:72042042-72042061 MsG0380015577.01.T01:intron 40.0%
!! GAGAGCATTTGTCTATGCTA+TGG - Chr3:72041861-72041880 MsG0380015577.01.T01:CDS 40.0%
!! GATCATCATTGGTTTCTGGA+CGG - Chr3:72041141-72041160 MsG0380015577.01.T01:intron 40.0%
!! GGAGATATAGCTTTTCAAGG+AGG - Chr3:72039304-72039323 MsG0380015577.01.T01:CDS 40.0%
!! TGTCGATCATCATTGGTTTC+TGG - Chr3:72041137-72041156 MsG0380015577.01.T01:intron 40.0%
!! TTGGAGGAGGGTTTTTGAAA+TGG - Chr3:72041449-72041468 MsG0380015577.01.T01:intron 40.0%
!!! TGGCTGTTTTTGGCATTCTT+GGG - Chr3:72039692-72039711 MsG0380015577.01.T01:CDS 40.0%
!!! TTGGCTGTTTTTGGCATTCT+TGG - Chr3:72039691-72039710 MsG0380015577.01.T01:CDS 40.0%
AACCTAAGCCATACACCAAG+AGG + Chr3:72041397-72041416 None:intergenic 45.0%
ATCAGTGAATGCAGAAGGAG+AGG + Chr3:72040172-72040191 None:intergenic 45.0%
CACTGGATCTTGTCTTTGCT+CGG - Chr3:72040841-72040860 MsG0380015577.01.T01:intron 45.0%
CATGAAGTTACCCAAGCTAC+TGG - Chr3:72039645-72039664 MsG0380015577.01.T01:intron 45.0%
CTTAACGAGTGCGAAATTGG+AGG - Chr3:72041433-72041452 MsG0380015577.01.T01:intron 45.0%
GAGAGGCGAACCATATTTGA+TGG + Chr3:72040155-72040174 None:intergenic 45.0%
GGCAATTCATGTTCCATTGC+AGG + Chr3:72039403-72039422 None:intergenic 45.0%
GTCTAACAACCGGCTACTTA+GGG - Chr3:72040761-72040780 MsG0380015577.01.T01:intron 45.0%
TGACAGCTTCCTTCGTCAAT+TGG - Chr3:72041246-72041265 MsG0380015577.01.T01:intron 45.0%
TTGGGTCTGAGTTAGGAAGT+TGG - Chr3:72042049-72042068 MsG0380015577.01.T01:five_prime_UTR 45.0%
! CTAGCCATTGGTCTAACAAC+CGG - Chr3:72040751-72040770 MsG0380015577.01.T01:intron 45.0%
! TACTAGTTTCCTCACGGTTG+AGG - Chr3:72039585-72039604 MsG0380015577.01.T01:intron 45.0%
! TCTTTGCTCGGCTTTGTACT+AGG - Chr3:72040853-72040872 MsG0380015577.01.T01:intron 45.0%
! TTGTTGGACCTCTTGGTGTA+TGG - Chr3:72041386-72041405 MsG0380015577.01.T01:intron 45.0%
!! GAGTTCAAAAATGGTGGTGG+TGG - Chr3:72041337-72041356 MsG0380015577.01.T01:intron 45.0%
!! TTGTGGTTAGCCTGCATTGT+TGG - Chr3:72041370-72041389 MsG0380015577.01.T01:intron 45.0%
!!! GGCTGTTTTTGGCATTCTTG+GGG - Chr3:72039693-72039712 MsG0380015577.01.T01:CDS 45.0%
AACGAGTGCGAAATTGGAGG+AGG - Chr3:72041436-72041455 MsG0380015577.01.T01:intron 50.0%
ACCAAGAGGTCCAACAATGC+AGG + Chr3:72041383-72041402 None:intergenic 50.0%
ACGAGTGCGAAATTGGAGGA+GGG - Chr3:72041437-72041456 MsG0380015577.01.T01:intron 50.0%
ATGGGGTGTGAGTAGTGCTT+TGG - Chr3:72041306-72041325 MsG0380015577.01.T01:intron 50.0%
GGAAGGAAAAGTGAGAGTGG+TGG - Chr3:72039325-72039344 MsG0380015577.01.T01:CDS 50.0%
GGAGGAAGGAAAAGTGAGAG+TGG - Chr3:72039322-72039341 MsG0380015577.01.T01:CDS 50.0%
GGGAGCCTAACAACTTTCAG+CGG - Chr3:72040781-72040800 MsG0380015577.01.T01:intron 50.0%
GGTCTAACAACCGGCTACTT+AGG - Chr3:72040760-72040779 MsG0380015577.01.T01:intron 50.0%
GTAGCCGGTTGTTAGACCAA+TGG + Chr3:72040758-72040777 None:intergenic 50.0%
GTAGCTGAGAATCGTGAGTG+TGG - Chr3:72039271-72039290 MsG0380015577.01.T01:CDS 50.0%
TCCAGCCGCTGAAAGTTGTT+AGG + Chr3:72040789-72040808 None:intergenic 50.0%
TGTTAGGCTCCCTAAGTAGC+CGG + Chr3:72040773-72040792 None:intergenic 50.0%
! AAAAGCATGCCTCAACCGTG+AGG + Chr3:72039597-72039616 None:intergenic 50.0%
! ATTGGTTTCTGGACGGCGAA+GGG - Chr3:72041148-72041167 MsG0380015577.01.T01:intron 50.0%
! GACCTCTTGGTGTATGGCTT+AGG - Chr3:72041392-72041411 MsG0380015577.01.T01:intron 50.0%
ATGGAGCGAACGAGCAGTTG+GGG - Chr3:72039196-72039215 MsG0380015577.01.T01:three_prime_UTR 55.0%
CATGGAGCGAACGAGCAGTT+GGG - Chr3:72039195-72039214 MsG0380015577.01.T01:three_prime_UTR 55.0%
CTGGTCACGCCAAAACCACT+TGG + Chr3:72040104-72040123 None:intergenic 55.0%
GCCTAACAACTTTCAGCGGC+TGG - Chr3:72040785-72040804 MsG0380015577.01.T01:intron 55.0%
GCCTGCATTGTTGGACCTCT+TGG - Chr3:72041379-72041398 MsG0380015577.01.T01:intron 55.0%
GGACGGCGAAGGGATTCAAA+TGG - Chr3:72041158-72041177 MsG0380015577.01.T01:intron 55.0%
GTTGGGGTTCTGCAGTTAGC+AGG - Chr3:72039212-72039231 MsG0380015577.01.T01:three_prime_UTR 55.0%
! GTGGTGGTGAAGCTCAGTTG+TGG - Chr3:72041353-72041372 MsG0380015577.01.T01:intron 55.0%
!! CATTGGTTTCTGGACGGCGA+AGG - Chr3:72041147-72041166 MsG0380015577.01.T01:intron 55.0%
ATGCTCGAGCTCAGTGTCGC+TGG - Chr3:72040817-72040836 MsG0380015577.01.T01:intron 60.0%
CCAACTGCTCGTTCGCTCCA+TGG + Chr3:72039197-72039216 None:intergenic 60.0%
CCATGGAGCGAACGAGCAGT+TGG - Chr3:72039194-72039213 MsG0380015577.01.T01:three_prime_UTR 60.0%
CGTGAGTGTGGTTCAGCTGC+AGG - Chr3:72039283-72039302 MsG0380015577.01.T01:CDS 60.0%
! AGCTCAGTGTCGCTGGACAC+TGG - Chr3:72040824-72040843 MsG0380015577.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72039088 72042109 72039088 ID=MsG0380015577.01;Name=MsG0380015577.01
Chr3 mRNA 72039088 72042109 72039088 ID=MsG0380015577.01.T01;Parent=MsG0380015577.01;Name=MsG0380015577.01.T01;_AED=0.37;_eAED=0.37;_QI=64|0.8|1|1|0.8|0.66|6|161|414
Chr3 exon 72039088 72039458 72039088 ID=MsG0380015577.01.T01:exon:11749;Parent=MsG0380015577.01.T01
Chr3 exon 72039651 72040078 72039651 ID=MsG0380015577.01.T01:exon:11748;Parent=MsG0380015577.01.T01
Chr3 exon 72040323 72040515 72040323 ID=MsG0380015577.01.T01:exon:11747;Parent=MsG0380015577.01.T01
Chr3 exon 72041483 72041566 72041483 ID=MsG0380015577.01.T01:exon:11746;Parent=MsG0380015577.01.T01
Chr3 exon 72041681 72042008 72041681 ID=MsG0380015577.01.T01:exon:11745;Parent=MsG0380015577.01.T01
Chr3 exon 72042044 72042109 72042044 ID=MsG0380015577.01.T01:exon:11744;Parent=MsG0380015577.01.T01
Chr3 five_prime_UTR 72042046 72042109 72042046 ID=MsG0380015577.01.T01:five_prime_utr;Parent=MsG0380015577.01.T01
Chr3 CDS 72042044 72042045 72042044 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 CDS 72041681 72042008 72041681 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 CDS 72041483 72041566 72041483 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 CDS 72040323 72040515 72040323 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 CDS 72039651 72040078 72039651 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 CDS 72039249 72039458 72039249 ID=MsG0380015577.01.T01:cds;Parent=MsG0380015577.01.T01
Chr3 three_prime_UTR 72039088 72039248 72039088 ID=MsG0380015577.01.T01:three_prime_utr;Parent=MsG0380015577.01.T01
Gene Sequence

>MsG0380015577.01.T01

ATGATCGCCATGGAGCGAACGAGCAGTTGGGGTTCTGCAGTTAGCAGGCTTTCAGTGTGTCAAAATGTAGATGTTGGTGATGATGTAGCTGAGAATCGTGAGTGTGGTTCAGCTGCAGGAGATATAGCTTTTCAAGGAGGAAGGAAAAGTGAGAGTGGTGGCTTTGACCTGTCTTTATATATCAAACCAGAAAATGGAACATTTGTGTACAATCCTGCAATGGAACATGAATTGCCGCCATCTAATAATAACTATATTGTAAATCCACAAGAACACATTCCCATCTTTGTTTCAACAAATGGAAAGGTTAATTGTGAAGACATAAAACAAGTTCTGGAACTTGACATGAAGTTACCCAAGCTACTGGAATTTGTTTCGTGTCTAACTCATTTGGCTGTTTTTGGCATTCTTGGGATTGGTTCCTTTTTGATGGGATGGTTTGGTTTTGTTTTTAAAGGAGATATATCCTATGTATCTGAACATCTAGCCATTGGTCTAACAACCGGCTACTTAGGGAGCCTAACAACTTTCAGCGGCTGGAATCAGAAAATGCTCGAGCTCAGTGTCGCTGGACACTGGATCTTGTCTTTGCTCGGCTTTGTACTAGGCATGTTTCTTGTAGCATTGTCGATCATCATTGGTTTCTGGACGGCGAAGGGATTCAAATGGTTACTCAAAAGACTAAACATGAGACATGAAAGTGACTCTTTTATATCGAAACTAAGCTGGAAGGTTGACAGCTTCCTTCGTCAATTGGTAGTGATCATAGTGTTGTTGGTGATATTAGCTTTGTTATGGGGTGTGAGTAGTGCTTTGGAAATAAATGAGTTCAAAAATGGTGGTGGTGGTGAAGCTCAGTTGTGGTTAGCCTGCATTGTTGGACCTCTTGGTGTATGGCTTAGGTTTTTCTTAGCTACTAGACTTAACGAGTGCGAAATTGGAGGAGGGTTTTTGAAATGGCTTCGATTTGGGACTCTTATTGCCAATGTTTCTGCTGCTTGTATCACGGCTGCACTTGCCACCCTCAAGAAATCAGTGAATACTACAAATTGTGATACTGTGATAACAGGACTTCAATTTGGTCTATTGGGATGTCTGAGTACTGTTTCAACATTTGTTGCTGAATTGTATGAACTGATAGAAAACAAGCATCTTTGGAGAGCATTTGTCTATGCTATGGTTACCATTTGCGTTTCATTTTCTTTTGGGATCTTATTATACTATATCCCTGTTTCAAGAATGTGA
Protein sequence

>MsG0380015577.01.T01

MIAMERTSSWGSAVSRLSVCQNVDVGDDVAENRECGSAAGDIAFQGGRKSESGGFDLSLYIKPENGTFVYNPAMEHELPPSNNNYIVNPQEHIPIFVSTNGKVNCEDIKQVLELDMKLPKLLEFVSCLTHLAVFGILGIGSFLMGWFGFVFKGDISYVSEHLAIGLTTGYLGSLTTFSGWNQKMLELSVAGHWILSLLGFVLGMFLVALSIIIGFWTAKGFKWLLKRLNMRHESDSFISKLSWKVDSFLRQLVVIIVLLVILALLWGVSSALEINEFKNGGGGEAQLWLACIVGPLGVWLRFFLATRLNECEIGGGFLKWLRFGTLIANVSAACITAALATLKKSVNTTNCDTVITGLQFGLLGCLSTVSTFVAELYELIENKHLWRAFVYAMVTICVSFSFGILLYYIPVSRM*