AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021190.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021190.01.T01 MTR_8g089030 48.980 147 63 5 86 225 144 285 1.69e-27 110
MsG0480021190.01.T01 MTR_8g089030 41.259 143 67 6 59 194 557 689 4.82e-19 85.9
MsG0480021190.01.T01 MTR_8g089030 48.980 147 63 5 86 225 144 285 1.89e-27 110
MsG0480021190.01.T01 MTR_8g089030 43.624 149 67 6 59 200 557 695 8.34e-23 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAGTTGGAGGATTTAA+AGG 0.200029 4:+54902817 MsG0480021190.01.T01:CDS
GTTCAATGAACAGAATGATT+TGG 0.268943 4:+54904693 MsG0480021190.01.T01:three_prime_UTR
GGAAAAGGAAGATGTAATTA+AGG 0.284760 4:+54904715 MsG0480021190.01.T01:three_prime_UTR
ACTTAATTTCATTGTGAATC+AGG 0.285562 4:-54903502 None:intergenic
GGGACAATGCTTTCATATAT+AGG 0.287041 4:-54904934 None:intergenic
CTCTCTCAGGTAGGGATATT+CGG 0.292534 4:+54902665 MsG0480021190.01.T01:intron
TTGTTCTTGACTATCTATTC+AGG 0.306654 4:+54904986 MsG0480021190.01.T01:three_prime_UTR
GTATCGAGCTGAGCTTCTTT+TGG 0.317600 4:+54903414 MsG0480021190.01.T01:CDS
TTCAATGAACAGAATGATTT+GGG 0.320198 4:+54904694 MsG0480021190.01.T01:three_prime_UTR
GATGTGCCATCCCTACTTAA+AGG 0.342714 4:+54904890 MsG0480021190.01.T01:three_prime_UTR
GAATTGCAGATTCAGATTCT+TGG 0.343032 4:+54903232 MsG0480021190.01.T01:CDS
GAAAGCATTGTCCCACAGTT+TGG 0.376185 4:+54904943 MsG0480021190.01.T01:three_prime_UTR
AATTGCAGATTCAGATTCTT+GGG 0.385387 4:+54903233 MsG0480021190.01.T01:CDS
AATTTCACAGCTGTTCATAC+TGG 0.387505 4:+54902917 MsG0480021190.01.T01:CDS
CGATGGTTATGAATCAATAA+AGG 0.388786 4:+54904802 MsG0480021190.01.T01:three_prime_UTR
TCATCGTCATCTGGATAAAT+CGG 0.397848 4:-54902778 None:intergenic
TATGAATTTGATTGTGAAGA+AGG 0.409577 4:+54903178 MsG0480021190.01.T01:CDS
GAACAGAATGATTTGGGAAA+AGG 0.412113 4:+54904700 MsG0480021190.01.T01:three_prime_UTR
AAAACTAAAGTCATTGAAGT+TGG 0.417655 4:+54902805 MsG0480021190.01.T01:CDS
CAACGTCCCAAGTTTCACTT+TGG 0.418180 4:-54900971 None:intergenic
GAGGGTTGGTTCAGATTGTT+CGG 0.419098 4:+54901002 MsG0480021190.01.T01:CDS
GCAATCCGGATTACGTATTC+CGG 0.436001 4:+54900926 MsG0480021190.01.T01:CDS
TTATCAACAACCCTTTAAGT+AGG 0.448389 4:-54904901 None:intergenic
TTGAAGTTGGAGGATTTAAA+GGG 0.450208 4:+54902818 MsG0480021190.01.T01:CDS
AGCTGTCCCAAAGTGAAACT+TGG 0.468384 4:+54900964 MsG0480021190.01.T01:CDS
TCATCTGGATAAATCGGCTT+TGG 0.471024 4:-54902772 None:intergenic
TGTACTTTCATGATAGAAAG+TGG 0.473343 4:+54904665 MsG0480021190.01.T01:three_prime_UTR
ATTGTTCGGACTACGTAATC+CGG 0.479957 4:+54901016 MsG0480021190.01.T01:CDS
TACCTAAACGTTTAGTTAGC+AGG 0.480311 4:-54903030 None:intergenic
ATGTGCCATCCCTACTTAAA+GGG 0.481677 4:+54904891 MsG0480021190.01.T01:three_prime_UTR
GGATAAGTTTGTCATATTTG+AGG 0.483069 4:+54904838 MsG0480021190.01.T01:three_prime_UTR
TCACTTTGTGATGGTTATAC+CGG 0.485058 4:+54903154 MsG0480021190.01.T01:CDS
GTGACTCAATCGAACTGAAA+AGG 0.486271 4:+54905508 MsG0480021190.01.T01:three_prime_UTR
GTTTAGTTAGCAGGTAGTCA+TGG 0.486296 4:-54903021 None:intergenic
TTTAGTTAGCAGGTAGTCAT+GGG 0.490628 4:-54903020 None:intergenic
CAGCTCGATACTTCTTTACA+AGG 0.495077 4:-54903402 None:intergenic
AACGTCCCAAGTTTCACTTT+GGG 0.495260 4:-54900970 None:intergenic
TCCGGAATTCACATGCAATC+CGG 0.499347 4:+54900912 None:intergenic
ACTTCTTTACAAGGAGAGGC+TGG 0.502762 4:-54903393 None:intergenic
TATCAACAACCCTTTAAGTA+GGG 0.508446 4:-54904900 None:intergenic
TGTGACATCTCCTTTGCTAA+TGG 0.517589 4:+54904771 MsG0480021190.01.T01:three_prime_UTR
ACTAAAGTCATTGAAGTTGG+AGG 0.519524 4:+54902808 MsG0480021190.01.T01:CDS
AATATATAGCGGTCGAATTG+TGG 0.520739 4:+54905822 MsG0480021190.01.T01:three_prime_UTR
TTCACAATCAAATTCATAGC+CGG 0.524784 4:-54903173 None:intergenic
TACCTGCTAACTAAACGTTT+AGG 0.524900 4:+54903028 MsG0480021190.01.T01:CDS
CTATTCCACTCACTTTGTGA+TGG 0.531983 4:+54903145 MsG0480021190.01.T01:CDS
AGATGTAATTAAGGAAGCCT+TGG 0.532966 4:+54904724 MsG0480021190.01.T01:three_prime_UTR
TTGTCATATTTGAGGACGAA+TGG 0.538916 4:+54904846 MsG0480021190.01.T01:three_prime_UTR
TGATTCACAATGAAATTAAG+TGG 0.540946 4:+54903504 MsG0480021190.01.T01:three_prime_UTR
GGTCGAATTGTGGACTTGCA+AGG 0.543899 4:+54905832 MsG0480021190.01.T01:three_prime_UTR
TGAAAGAAAGATGAAGGTGA+AGG 0.552232 4:+54902551 MsG0480021190.01.T01:CDS
ACGTTGTGTATGGTGAGGGT+TGG 0.554672 4:+54900988 MsG0480021190.01.T01:CDS
CGATACTTCTTTACAAGGAG+AGG 0.559558 4:-54903397 None:intergenic
AAGAAAGATGAAGGTGAAGG+AGG 0.565852 4:+54902554 MsG0480021190.01.T01:CDS
ACAATGAAATTAAGTGGCCA+AGG 0.567859 4:+54903510 MsG0480021190.01.T01:three_prime_UTR
GAAACTTGGGACGTTGTGTA+TGG 0.572703 4:+54900978 MsG0480021190.01.T01:CDS
AATAAAGGCTAACAATACTA+CGG 0.575555 4:+54904817 MsG0480021190.01.T01:three_prime_UTR
AACAACCCTTTAAGTAGGGA+TGG 0.581946 4:-54904896 None:intergenic
TGAGGACGAATGGTTTGAGT+TGG 0.583268 4:+54904856 MsG0480021190.01.T01:three_prime_UTR
TGGATGCAGGAATAAAATTG+AGG 0.584634 4:+54905719 MsG0480021190.01.T01:intron
ACAGTTTGGTTGCATGATTG+TGG 0.586729 4:+54904957 MsG0480021190.01.T01:three_prime_UTR
GTCGAATTGTGGACTTGCAA+GGG 0.587203 4:+54905833 MsG0480021190.01.T01:three_prime_UTR
CGTATAATCTCCATTAGCAA+AGG 0.589901 4:-54904781 None:intergenic
GTGCTCAGTGCATAAAACAT+TGG 0.590886 4:-54902980 None:intergenic
GCTGTCCCAAAGTGAAACTT+GGG 0.610824 4:+54900965 MsG0480021190.01.T01:CDS
GTGTTTGTTCAAATATATAG+CGG 0.610893 4:+54905811 MsG0480021190.01.T01:three_prime_UTR
CAATCATGCAACCAAACTGT+GGG 0.620049 4:-54904954 None:intergenic
ACAATCATGCAACCAAACTG+TGG 0.621941 4:-54904955 None:intergenic
TGGGACGTTGTGTATGGTGA+GGG 0.633508 4:+54900984 MsG0480021190.01.T01:CDS
TATAACCATCACAAAGTGAG+TGG 0.636863 4:-54903150 None:intergenic
TTAGTTAGCAGGTAGTCATG+GGG 0.649914 4:-54903019 None:intergenic
TGCTAATGGAGATTATACGA+TGG 0.653297 4:+54904785 MsG0480021190.01.T01:three_prime_UTR
TTGGGACGTTGTGTATGGTG+AGG 0.680855 4:+54900983 MsG0480021190.01.T01:CDS
TAGTTAGCAGGTAGTCATGG+GGG 0.712376 4:-54903018 None:intergenic
AGATAAATCAAATTTCAACG+AGG 0.780113 4:-54902942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGCTTATAATTAATTATA+TGG - Chr4:54903309-54903328 None:intergenic 10.0%
!! ATATAATTAATTATAAGCAT+TGG + Chr4:54903308-54903327 MsG0480021190.01.T01:intron 10.0%
!! ATTCAACAAAAAAAAAAAAA+CGG + Chr4:54904576-54904595 MsG0480021190.01.T01:intron 10.0%
!! TATAATTAATTATAAGCATT+GGG + Chr4:54903309-54903328 MsG0480021190.01.T01:intron 10.0%
!!! TATTTATTTTTGAAGAAAAA+TGG + Chr4:54905181-54905200 MsG0480021190.01.T01:intron 10.0%
!!! TCAATTTTTTTAAGTTTTTT+AGG + Chr4:54902025-54902044 MsG0480021190.01.T01:intron 10.0%
!! AAAAAAGTAAAAAAATACCT+TGG - Chr4:54903530-54903549 None:intergenic 15.0%
!! AAATAGGAATAATTAATTAC+AGG + Chr4:54904378-54904397 MsG0480021190.01.T01:intron 15.0%
!! AATGTGATATTCTTAATTTA+TGG + Chr4:54904525-54904544 MsG0480021190.01.T01:intron 15.0%
!! ACTTATATAAGGTTATAAAA+AGG + Chr4:54901947-54901966 MsG0480021190.01.T01:intron 15.0%
!! ATCAAATAGTTAACAAAATA+AGG - Chr4:54905325-54905344 None:intergenic 15.0%
!! ATGTGATATTCTTAATTTAT+GGG + Chr4:54904526-54904545 MsG0480021190.01.T01:intron 15.0%
!! ATTCATCATTTATGTTATTA+TGG + Chr4:54901630-54901649 MsG0480021190.01.T01:intron 15.0%
!! ATTTAATTAATAGATGTGTA+TGG + Chr4:54903632-54903651 MsG0480021190.01.T01:intron 15.0%
!! CAAAAAGATATAACAAATTA+TGG + Chr4:54903976-54903995 MsG0480021190.01.T01:intron 15.0%
!! GAGAAAAAAGTAAAAAAAAT+GGG + Chr4:54905536-54905555 MsG0480021190.01.T01:three_prime_UTR 15.0%
!! GTCAATAAATAAATCATATA+TGG - Chr4:54905014-54905033 None:intergenic 15.0%
!! TTCAACAAAAAAAAAAAAAC+GGG + Chr4:54904577-54904596 MsG0480021190.01.T01:intron 15.0%
!!! ATTAATTATTCCTATTTCTA+AGG - Chr4:54904375-54904394 None:intergenic 15.0%
!!! CATTTTTTTTACTTTTTTCT+CGG - Chr4:54905537-54905556 None:intergenic 15.0%
!!! TGAATTTTAATAATATATGG+TGG + Chr4:54903665-54903684 MsG0480021190.01.T01:intron 15.0%
!! AAAAAACTAGTATTAGGTTT+AGG - Chr4:54902336-54902355 None:intergenic 20.0%
!! AAAGATATAACAAATTATGG+TGG + Chr4:54903979-54903998 MsG0480021190.01.T01:intron 20.0%
!! AATTGAAGAAAATGTAAGAA+AGG - Chr4:54902011-54902030 None:intergenic 20.0%
!! CGAGAAAAAAGTAAAAAAAA+TGG + Chr4:54905535-54905554 MsG0480021190.01.T01:three_prime_UTR 20.0%
!! GAGAAAAATGTGAAAAAAAT+GGG + Chr4:54905250-54905269 MsG0480021190.01.T01:three_prime_UTR 20.0%
!! TAACATTGCAGTATTTATAA+GGG - Chr4:54904044-54904063 None:intergenic 20.0%
!! TATAACCTTATATAAGTCAT+AGG - Chr4:54901944-54901963 None:intergenic 20.0%
!! TATTGTTTGTGTCAATTATT+TGG - Chr4:54903952-54903971 None:intergenic 20.0%
!! TTAACATTGCAGTATTTATA+AGG - Chr4:54904045-54904064 None:intergenic 20.0%
!! TTGCTAAAAAAACTAGTATT+AGG - Chr4:54902342-54902361 None:intergenic 20.0%
!!! AACATAAATGATGAATCTTT+TGG - Chr4:54901626-54901645 None:intergenic 20.0%
!!! ACATAAATGATGAATCTTTT+GGG - Chr4:54901625-54901644 None:intergenic 20.0%
!!! ATATTTTTTATGTGAACTGT+GGG + Chr4:54904011-54904030 MsG0480021190.01.T01:intron 20.0%
!!! ATTATTTATTTAATGGATGC+AGG + Chr4:54905457-54905476 MsG0480021190.01.T01:intron 20.0%
!!! CATTTTTTTCACATTTTTCT+CGG - Chr4:54905251-54905270 None:intergenic 20.0%
!!! GTATTTTTGAAATTTTTGCA+TGG + Chr4:54902259-54902278 MsG0480021190.01.T01:intron 20.0%
!!! TATTGATTTGAGTAACTAAA+TGG - Chr4:54904261-54904280 None:intergenic 20.0%
!!! TCTTTGATCTATTTTTTTCA+AGG + Chr4:54901703-54901722 MsG0480021190.01.T01:intron 20.0%
!!! TTTATTTATTTAATGGATGC+AGG + Chr4:54905706-54905725 MsG0480021190.01.T01:intron 20.0%
!!! TTTTGTTGAATAACAAACAT+GGG - Chr4:54904567-54904586 None:intergenic 20.0%
!!! TTTTTGAAAAACTTTGATGA+AGG + Chr4:54902691-54902710 MsG0480021190.01.T01:CDS 20.0%
!!! TTTTTGTTGAATAACAAACA+TGG - Chr4:54904568-54904587 None:intergenic 20.0%
! AAAACTAAAGTCATTGAAGT+TGG + Chr4:54902805-54902824 MsG0480021190.01.T01:CDS 25.0%
! AATAAAGGCTAACAATACTA+CGG + Chr4:54904817-54904836 MsG0480021190.01.T01:three_prime_UTR 25.0%
! AATACTGCAATGTTAAACAA+TGG + Chr4:54904049-54904068 MsG0480021190.01.T01:intron 25.0%
! AATATAAAGAAACAAGACTC+AGG - Chr4:54905036-54905055 None:intergenic 25.0%
! AATGAAAACGATCCAAATAA+AGG + Chr4:54901733-54901752 MsG0480021190.01.T01:intron 25.0%
! AATTAGCAAACAAAAACTTG+AGG - Chr4:54904613-54904632 None:intergenic 25.0%
! ACAAAATATGCATATCGAAT+TGG + Chr4:54902174-54902193 MsG0480021190.01.T01:intron 25.0%
! ACTTAATTTCATTGTGAATC+AGG - Chr4:54903505-54903524 None:intergenic 25.0%
! AGATAAATCAAATTTCAACG+AGG - Chr4:54902945-54902964 None:intergenic 25.0%
! AGTGTTTATGTGTATTGTAT+TGG + Chr4:54902470-54902489 MsG0480021190.01.T01:intron 25.0%
! ATGAAAACGATCCAAATAAA+GGG + Chr4:54901734-54901753 MsG0480021190.01.T01:intron 25.0%
! ATTAGCAAACAAAAACTTGA+GGG - Chr4:54904612-54904631 None:intergenic 25.0%
! CGAGAAAAATGTGAAAAAAA+TGG + Chr4:54905249-54905268 MsG0480021190.01.T01:three_prime_UTR 25.0%
! GATAACTCAAAAATATCAAG+AGG + Chr4:54901370-54901389 MsG0480021190.01.T01:intron 25.0%
! GGAATAATTAATTACAGGAT+AGG + Chr4:54904383-54904402 MsG0480021190.01.T01:intron 25.0%
! GTGTTTGTTCAAATATATAG+CGG + Chr4:54905811-54905830 MsG0480021190.01.T01:three_prime_UTR 25.0%
! TAAGACCTATGACTTATATA+AGG + Chr4:54901936-54901955 MsG0480021190.01.T01:intron 25.0%
! TAAGTATGAGTATCAACAAA+AGG - Chr4:54902622-54902641 None:intergenic 25.0%
! TATAAGGTTATAAAAAGGCA+TGG + Chr4:54901952-54901971 MsG0480021190.01.T01:intron 25.0%
! TATGAATTTGATTGTGAAGA+AGG + Chr4:54903178-54903197 MsG0480021190.01.T01:CDS 25.0%
! TATTTGATAGAAACTGTTTG+TGG + Chr4:54905337-54905356 MsG0480021190.01.T01:intron 25.0%
! TGATTCACAATGAAATTAAG+TGG + Chr4:54903504-54903523 MsG0480021190.01.T01:three_prime_UTR 25.0%
! TTCAATGAACAGAATGATTT+GGG + Chr4:54904694-54904713 MsG0480021190.01.T01:three_prime_UTR 25.0%
! TTGTAAATTTCATTACTGCA+AGG - Chr4:54904090-54904109 None:intergenic 25.0%
!! AAAAATGGAAAGAAAAGTGT+AGG + Chr4:54905779-54905798 MsG0480021190.01.T01:three_prime_UTR 25.0%
!! CTTGATGACAAAAAATTTCA+TGG - Chr4:54901228-54901247 None:intergenic 25.0%
!! TTTGTATTTGATGCTTTTGT+AGG + Chr4:54904472-54904491 MsG0480021190.01.T01:intron 25.0%
!!! AAAAATTTCATGGTTTGCTT+TGG - Chr4:54901218-54901237 None:intergenic 25.0%
!!! AAGTTTTTTAGGTAGCTTTT+AGG + Chr4:54902036-54902055 MsG0480021190.01.T01:intron 25.0%
!!! ATATTTTTGACAACATGTTG+AGG - Chr4:54901318-54901337 None:intergenic 25.0%
!!! GATATTTTTTATGTGAACTG+TGG + Chr4:54904010-54904029 MsG0480021190.01.T01:intron 25.0%
!!! GATTTTTGCTGTAAATAGAT+GGG + Chr4:54905578-54905597 MsG0480021190.01.T01:intron 25.0%
!!! TGATTTTGAAAGAAAGATGA+AGG + Chr4:54902545-54902564 MsG0480021190.01.T01:CDS 25.0%
!!! TGATTTTTGCTGTAAATAGA+CGG + Chr4:54905293-54905312 MsG0480021190.01.T01:intron 25.0%
!!! TGATTTTTGCTGTAAATAGA+TGG + Chr4:54905293-54905312 MsG0480021190.01.T01:intron 25.0%
!!! TTTTTGAAGAAAAATGGAGA+AGG + Chr4:54905187-54905206 MsG0480021190.01.T01:intron 25.0%
AAAAAAATGGGAGAAGCAAA+AGG + Chr4:54905548-54905567 MsG0480021190.01.T01:three_prime_UTR 30.0%
AAACTAGTATTAGGTTTAGG+TGG - Chr4:54902333-54902352 None:intergenic 30.0%
AAATGTTGTACAAACGTTGT+AGG + Chr4:54904441-54904460 MsG0480021190.01.T01:intron 30.0%
AATTGCAGATTCAGATTCTT+GGG + Chr4:54903233-54903252 MsG0480021190.01.T01:CDS 30.0%
ACCAACATAATGCATACATA+AGG - Chr4:54903264-54903283 None:intergenic 30.0%
AGATTGATATGCCAATATAC+AGG + Chr4:54902894-54902913 MsG0480021190.01.T01:intron 30.0%
ATTGAAGTTGGAGGATTTAA+AGG + Chr4:54902817-54902836 MsG0480021190.01.T01:CDS 30.0%
CGATGGTTATGAATCAATAA+AGG + Chr4:54904802-54904821 MsG0480021190.01.T01:three_prime_UTR 30.0%
CTAAAAAAAATGATGCACCA+AGG - Chr4:54904744-54904763 None:intergenic 30.0%
CTCTATAAATACATCATCTC+CGG + Chr4:54901156-54901175 MsG0480021190.01.T01:intron 30.0%
CTCTATTCTATTCTTACGAT+CGG - Chr4:54902367-54902386 None:intergenic 30.0%
GAAAAGAAGTCGAACAAAAA+TGG + Chr4:54905764-54905783 MsG0480021190.01.T01:three_prime_UTR 30.0%
GAGTTATCTATCTATCAAAG+AGG - Chr4:54901358-54901377 None:intergenic 30.0%
GCATTACGAGATATTCATAA+TGG + Chr4:54903824-54903843 MsG0480021190.01.T01:intron 30.0%
GGAAAAGGAAGATGTAATTA+AGG + Chr4:54904715-54904734 MsG0480021190.01.T01:three_prime_UTR 30.0%
GGATAAGTTTGTCATATTTG+AGG + Chr4:54904838-54904857 MsG0480021190.01.T01:three_prime_UTR 30.0%
GTTCAATGAACAGAATGATT+TGG + Chr4:54904693-54904712 MsG0480021190.01.T01:three_prime_UTR 30.0%
GTTTATGTGTATTGTATTGG+TGG + Chr4:54902473-54902492 MsG0480021190.01.T01:intron 30.0%
TATCAACAACCCTTTAAGTA+GGG - Chr4:54904903-54904922 None:intergenic 30.0%
TCCTTATGTATGCATTATGT+TGG + Chr4:54903260-54903279 MsG0480021190.01.T01:intron 30.0%
TCTTATGAACTTGATCATGT+CGG + Chr4:54901530-54901549 MsG0480021190.01.T01:intron 30.0%
TGAAGAAAATGTAAGAAAGG+AGG - Chr4:54902008-54902027 None:intergenic 30.0%
TGTACTTTCATGATAGAAAG+TGG + Chr4:54904665-54904684 MsG0480021190.01.T01:three_prime_UTR 30.0%
TGTTTCCGGATTATAAAATC+CGG - Chr4:54902201-54902220 None:intergenic 30.0%
TTAGCATGTCTTAGTTGATT+CGG + Chr4:54903732-54903751 MsG0480021190.01.T01:intron 30.0%
TTATCAACAACCCTTTAAGT+AGG - Chr4:54904904-54904923 None:intergenic 30.0%
TTCACAATCAAATTCATAGC+CGG - Chr4:54903176-54903195 None:intergenic 30.0%
TTGAAGTTGGAGGATTTAAA+GGG + Chr4:54902818-54902837 MsG0480021190.01.T01:CDS 30.0%
TTGTTCTTGACTATCTATTC+AGG + Chr4:54904986-54905005 MsG0480021190.01.T01:three_prime_UTR 30.0%
! ACTGAATTTTGAACTCATGA+AGG - Chr4:54903850-54903869 None:intergenic 30.0%
! ATTGGTGGTATGAGATTATA+GGG + Chr4:54902488-54902507 MsG0480021190.01.T01:intron 30.0%
! CAACATAGGATTCTTTTGTA+TGG + Chr4:54901088-54901107 MsG0480021190.01.T01:intron 30.0%
! GTTTTATAATCATCGTCATC+TGG - Chr4:54902790-54902809 None:intergenic 30.0%
! TATTGGTGGTATGAGATTAT+AGG + Chr4:54902487-54902506 MsG0480021190.01.T01:intron 30.0%
! TCATCATTTGTTAACCCAAA+GGG + Chr4:54903802-54903821 MsG0480021190.01.T01:intron 30.0%
! TTCATCATTTGTTAACCCAA+AGG + Chr4:54903801-54903820 MsG0480021190.01.T01:intron 30.0%
!! AAAGACAAGGTATTTTCAAG+AGG - Chr4:54901473-54901492 None:intergenic 30.0%
!! AAATGATGAATCTTTTGGGA+AGG - Chr4:54901621-54901640 None:intergenic 30.0%
!! ATTTTTGCTGTAAATAGACG+GGG + Chr4:54905295-54905314 MsG0480021190.01.T01:intron 30.0%
!! GATTTTTGCTGTAAATAGAC+GGG + Chr4:54905294-54905313 MsG0480021190.01.T01:intron 30.0%
!!! AATTTTTTGTCATCAAGCTG+AGG + Chr4:54901231-54901250 MsG0480021190.01.T01:intron 30.0%
!!! GGTGCATCATTTTTTTTAGA+TGG + Chr4:54904745-54904764 MsG0480021190.01.T01:three_prime_UTR 30.0%
!!! TTATAGGGTTTTGTTTCAAC+AGG + Chr4:54902503-54902522 MsG0480021190.01.T01:intron 30.0%
!!! TTGTTTTTGAAGCAATGTCT+TGG + Chr4:54903767-54903786 MsG0480021190.01.T01:intron 30.0%
AAAAATGGGAGAAGAAGCAA+AGG + Chr4:54905264-54905283 MsG0480021190.01.T01:three_prime_UTR 35.0%
AAAATGTTACTGAGGGTTTC+CGG - Chr4:54901819-54901838 None:intergenic 35.0%
AAATGACATATTCATCTGGC+AGG - Chr4:54901419-54901438 None:intergenic 35.0%
AACCAGATTGTTAGTGTTTC+CGG - Chr4:54902215-54902234 None:intergenic 35.0%
AATATATAGCGGTCGAATTG+TGG + Chr4:54905822-54905841 MsG0480021190.01.T01:three_prime_UTR 35.0%
AATATCTCGTAATGCCCTTT+GGG - Chr4:54903819-54903838 None:intergenic 35.0%
AATCCTATGTTGAGTCATTC+CGG - Chr4:54901080-54901099 None:intergenic 35.0%
AATTTCACAGCTGTTCATAC+TGG + Chr4:54902917-54902936 MsG0480021190.01.T01:CDS 35.0%
ACAATGAAATTAAGTGGCCA+AGG + Chr4:54903510-54903529 MsG0480021190.01.T01:three_prime_UTR 35.0%
ACGTAATCCGGAAAAACATA+GGG + Chr4:54901028-54901047 MsG0480021190.01.T01:CDS 35.0%
ACTAAAGTCATTGAAGTTGG+AGG + Chr4:54902808-54902827 MsG0480021190.01.T01:CDS 35.0%
AGATGTAATTAAGGAAGCCT+TGG + Chr4:54904724-54904743 MsG0480021190.01.T01:three_prime_UTR 35.0%
ATATACAGTAGACTGTTCAG+AGG + Chr4:54905665-54905684 MsG0480021190.01.T01:intron 35.0%
ATATGCATATCGAATTGGTC+CGG + Chr4:54902179-54902198 MsG0480021190.01.T01:intron 35.0%
ATCATCAGATTCGAATGAGA+GGG - Chr4:54903886-54903905 None:intergenic 35.0%
CAACACAATGAAGAAAGACA+AGG - Chr4:54901486-54901505 None:intergenic 35.0%
CAACTAAGACATGCTAAACA+TGG - Chr4:54903729-54903748 None:intergenic 35.0%
CAATCATACAATGAGTTGCA+TGG - Chr4:54903347-54903366 None:intergenic 35.0%
CATAAACTCTTAGTGCAATG+TGG - Chr4:54901115-54901134 None:intergenic 35.0%
CATTGCACTAAGAGTTTATG+TGG + Chr4:54901115-54901134 MsG0480021190.01.T01:intron 35.0%
CGGAGATGATGTATTTATAG+AGG - Chr4:54901158-54901177 None:intergenic 35.0%
CGTATAATCTCCATTAGCAA+AGG - Chr4:54904784-54904803 None:intergenic 35.0%
CTACTTGATAGAAACTGTTG+TGG + Chr4:54905618-54905637 MsG0480021190.01.T01:intron 35.0%
CTGCAATGTTAAACAATGGA+TGG + Chr4:54904053-54904072 MsG0480021190.01.T01:intron 35.0%
CTTCCACAATTTGATATTCC+CGG - Chr4:54904327-54904346 None:intergenic 35.0%
GAAACACTAACAATCTGGTT+CGG + Chr4:54902215-54902234 MsG0480021190.01.T01:intron 35.0%
GAAGTTCGGACTATATAATC+CGG + Chr4:54901763-54901782 MsG0480021190.01.T01:intron 35.0%
GAATAGAATAGAGAGAGAAG+CGG + Chr4:54902374-54902393 MsG0480021190.01.T01:intron 35.0%
GAATTGCAGATTCAGATTCT+TGG + Chr4:54903232-54903251 MsG0480021190.01.T01:CDS 35.0%
GATGTATTTATAGAGGTCCT+TGG - Chr4:54901151-54901170 None:intergenic 35.0%
GCTGTGAAATTCCTGTATAT+TGG - Chr4:54902908-54902927 None:intergenic 35.0%
GGGACAATGCTTTCATATAT+AGG - Chr4:54904937-54904956 None:intergenic 35.0%
GTGTCTTTCTTTGATGTCAA+GGG - Chr4:54902156-54902175 None:intergenic 35.0%
GTTCATAAGAACCTCTTCTT+TGG - Chr4:54901520-54901539 None:intergenic 35.0%
TACCTAAACGTTTAGTTAGC+AGG - Chr4:54903033-54903052 None:intergenic 35.0%
TACCTGCTAACTAAACGTTT+AGG + Chr4:54903028-54903047 MsG0480021190.01.T01:CDS 35.0%
TACGTAATCCGGAAAAACAT+AGG + Chr4:54901027-54901046 MsG0480021190.01.T01:CDS 35.0%
TATAACCATCACAAAGTGAG+TGG - Chr4:54903153-54903172 None:intergenic 35.0%
TATCATCAGATTCGAATGAG+AGG - Chr4:54903887-54903906 None:intergenic 35.0%
TCACTTTGTGATGGTTATAC+CGG + Chr4:54903154-54903173 MsG0480021190.01.T01:CDS 35.0%
TCATCGTCATCTGGATAAAT+CGG - Chr4:54902781-54902800 None:intergenic 35.0%
TGAAAGAAAGATGAAGGTGA+AGG + Chr4:54902551-54902570 MsG0480021190.01.T01:CDS 35.0%
TGCCAAATGACATATTCATC+TGG - Chr4:54901423-54901442 None:intergenic 35.0%
TGCCAGATGAATATGTCATT+TGG + Chr4:54901418-54901437 MsG0480021190.01.T01:intron 35.0%
TGCTAACTAAACGTTTAGGT+AGG + Chr4:54903032-54903051 MsG0480021190.01.T01:intron 35.0%
TGCTAATGGAGATTATACGA+TGG + Chr4:54904785-54904804 MsG0480021190.01.T01:three_prime_UTR 35.0%
TGGATGCAGGAATAAAATTG+AGG + Chr4:54905719-54905738 MsG0480021190.01.T01:intron 35.0%
TGTGTCTTTCTTTGATGTCA+AGG - Chr4:54902157-54902176 None:intergenic 35.0%
TTCCACAATTTGATATTCCC+GGG - Chr4:54904326-54904345 None:intergenic 35.0%
TTGTCATATTTGAGGACGAA+TGG + Chr4:54904846-54904865 MsG0480021190.01.T01:three_prime_UTR 35.0%
TTTAGTTAGCAGGTAGTCAT+GGG - Chr4:54903023-54903042 None:intergenic 35.0%
TTTCAAAAATACCCCTAGTC+CGG - Chr4:54902251-54902270 None:intergenic 35.0%
! AGCTCATTATCGTCTTTTTC+CGG - Chr4:54900948-54900967 None:intergenic 35.0%
! ATGGTATTGAAGGTGAAAAC+CGG - Chr4:54901178-54901197 None:intergenic 35.0%
! GAACAGAATGATTTGGGAAA+AGG + Chr4:54904700-54904719 MsG0480021190.01.T01:three_prime_UTR 35.0%
! GATGAATATGTCATTTGGCA+AGG + Chr4:54901423-54901442 MsG0480021190.01.T01:intron 35.0%
! TGAGTTAGCTCTCTATTTGA+CGG + Chr4:54901280-54901299 MsG0480021190.01.T01:intron 35.0%
! TGTGATACAATAGTGTTGCT+AGG + Chr4:54905104-54905123 MsG0480021190.01.T01:intron 35.0%
! TTGGTCCGGATTTTATAATC+CGG + Chr4:54902193-54902212 MsG0480021190.01.T01:intron 35.0%
! TTTTTCCGGAATACGTAATC+CGG - Chr4:54900934-54900953 None:intergenic 35.0%
!! TATCTATCAAAGAGGCATCA+AGG - Chr4:54901350-54901369 None:intergenic 35.0%
AACAACCCTTTAAGTAGGGA+TGG - Chr4:54904899-54904918 None:intergenic 40.0%
AACCTTTGGTGAAATGTCAC+CGG - Chr4:54901844-54901863 None:intergenic 40.0%
AACGATCCAAATAAAGGGTC+AGG + Chr4:54901739-54901758 MsG0480021190.01.T01:intron 40.0%
AACGTCCCAAGTTTCACTTT+GGG - Chr4:54900973-54900992 None:intergenic 40.0%
AAGAAAGATGAAGGTGAAGG+AGG + Chr4:54902554-54902573 MsG0480021190.01.T01:CDS 40.0%
AAGGAGGTGAAGAAGAATGA+AGG - Chr4:54901992-54902011 None:intergenic 40.0%
AATTGCTTTGCAGCTTATGC+GGG + Chr4:54902107-54902126 MsG0480021190.01.T01:intron 40.0%
ACAATCATGCAACCAAACTG+TGG - Chr4:54904958-54904977 None:intergenic 40.0%
ACAGTTTGGTTGCATGATTG+TGG + Chr4:54904957-54904976 MsG0480021190.01.T01:three_prime_UTR 40.0%
ACTGGCACTTCCTTAGAAAT+AGG + Chr4:54904362-54904381 MsG0480021190.01.T01:intron 40.0%
ACTTCACCTGACCCTTTATT+TGG - Chr4:54901748-54901767 None:intergenic 40.0%
AGAACCATTCTCATCTCAGT+GGG - Chr4:54904143-54904162 None:intergenic 40.0%
ATAAAGGGTCAGGTGAAGTT+CGG + Chr4:54901749-54901768 MsG0480021190.01.T01:intron 40.0%
ATAAGCTGCAAAGCAATTGC+AGG - Chr4:54902105-54902124 None:intergenic 40.0%
ATCCGGAAACACTAACAATC+TGG + Chr4:54902210-54902229 MsG0480021190.01.T01:intron 40.0%
ATCGTAACATGTCAGTTGAC+AGG + Chr4:54901560-54901579 MsG0480021190.01.T01:intron 40.0%
ATGTGCCATCCCTACTTAAA+GGG + Chr4:54904891-54904910 MsG0480021190.01.T01:three_prime_UTR 40.0%
ATTGTTCGGACTACGTAATC+CGG + Chr4:54901016-54901035 MsG0480021190.01.T01:CDS 40.0%
CAATCATGCAACCAAACTGT+GGG - Chr4:54904957-54904976 None:intergenic 40.0%
CAATTGCTTTGCAGCTTATG+CGG + Chr4:54902106-54902125 MsG0480021190.01.T01:intron 40.0%
CAGATCTAACTCCAAAGAAG+AGG + Chr4:54901506-54901525 MsG0480021190.01.T01:intron 40.0%
CAGCTCGATACTTCTTTACA+AGG - Chr4:54903405-54903424 None:intergenic 40.0%
CGATACTTCTTTACAAGGAG+AGG - Chr4:54903400-54903419 None:intergenic 40.0%
CGGGAATATCAAATTGTGGA+AGG + Chr4:54904325-54904344 MsG0480021190.01.T01:intron 40.0%
CTATTCCACTCACTTTGTGA+TGG + Chr4:54903145-54903164 MsG0480021190.01.T01:CDS 40.0%
GAATATCTCGTAATGCCCTT+TGG - Chr4:54903820-54903839 None:intergenic 40.0%
GGAAAATGTAATCCGGACTA+GGG + Chr4:54902236-54902255 MsG0480021190.01.T01:intron 40.0%
GGTTTCCGGAAAATACAATC+CGG - Chr4:54901805-54901824 None:intergenic 40.0%
GTCAACTGACATGTTACGAT+CGG - Chr4:54901560-54901579 None:intergenic 40.0%
GTGACATTTCACCAAAGGTT+AGG + Chr4:54901844-54901863 MsG0480021190.01.T01:intron 40.0%
GTGACTCAATCGAACTGAAA+AGG + Chr4:54905508-54905527 MsG0480021190.01.T01:three_prime_UTR 40.0%
GTGCTCAGTGCATAAAACAT+TGG - Chr4:54902983-54903002 None:intergenic 40.0%
GTTTAGTTAGCAGGTAGTCA+TGG - Chr4:54903024-54903043 None:intergenic 40.0%
TAAGCTGCAAAGCAATTGCA+GGG - Chr4:54902104-54902123 None:intergenic 40.0%
TAGAATATGATCAGCCTGCA+CGG - Chr4:54905152-54905171 None:intergenic 40.0%
TGAGTAACTAAATGGACACG+TGG - Chr4:54904253-54904272 None:intergenic 40.0%
TGCATTCAAACTCCACTAAC+CGG - Chr4:54901870-54901889 None:intergenic 40.0%
TGTGACATCTCCTTTGCTAA+TGG + Chr4:54904771-54904790 MsG0480021190.01.T01:three_prime_UTR 40.0%
TTAGTTAGCAGGTAGTCATG+GGG - Chr4:54903022-54903041 None:intergenic 40.0%
! ACAATAGTGTTGCTAGGCTT+TGG + Chr4:54905110-54905129 MsG0480021190.01.T01:intron 40.0%
! ACTTACGCCCTATGTTTTTC+CGG - Chr4:54901038-54901057 None:intergenic 40.0%
! AGAAGGTTTTCTTGACGATG+AGG + Chr4:54903195-54903214 MsG0480021190.01.T01:CDS 40.0%
! GAAAATGTAATCCGGACTAG+GGG + Chr4:54902237-54902256 MsG0480021190.01.T01:intron 40.0%
! GAAGGTTTTCTTGACGATGA+GGG + Chr4:54903196-54903215 MsG0480021190.01.T01:CDS 40.0%
! GGAAACCCTCAGTAACATTT+TGG + Chr4:54901818-54901837 MsG0480021190.01.T01:intron 40.0%
! TCATCTGGATAAATCGGCTT+TGG - Chr4:54902775-54902794 None:intergenic 40.0%
!! CAATAGTGTTGCTAGGCTTT+TGG + Chr4:54905111-54905130 MsG0480021190.01.T01:intron 40.0%
!! CTGGTTCGGAAAATGTAATC+CGG + Chr4:54902229-54902248 MsG0480021190.01.T01:intron 40.0%
!! TATTTCTAAGGAAGTGCCAG+TGG - Chr4:54904363-54904382 None:intergenic 40.0%
!!! GAAGAAGAGCATACTGGTTT+TGG - Chr4:54904191-54904210 None:intergenic 40.0%
!!! GCGTGTTTTGATGGTATTGA+AGG - Chr4:54901188-54901207 None:intergenic 40.0%
!!! GTAGCTTTTAGGAGTGTTTG+TGG + Chr4:54902047-54902066 MsG0480021190.01.T01:intron 40.0%
AACCATTCTCATCTCAGTGG+GGG - Chr4:54904141-54904160 None:intergenic 45.0%
AAGCTGCAAAGCAATTGCAG+GGG - Chr4:54902103-54902122 None:intergenic 45.0%
AAGGACCAAGTCAATTCCAC+TGG + Chr4:54904344-54904363 MsG0480021190.01.T01:intron 45.0%
AAGTGCCAGTGGAATTGACT+TGG - Chr4:54904352-54904371 None:intergenic 45.0%
ACCGGCCAAAATGTTACTGA+GGG - Chr4:54901826-54901845 None:intergenic 45.0%
ACTCCGGAATGACTCAACAT+AGG + Chr4:54901074-54901093 MsG0480021190.01.T01:intron 45.0%
ACTTCTTTACAAGGAGAGGC+TGG - Chr4:54903396-54903415 None:intergenic 45.0%
AGCTGTCCCAAAGTGAAACT+TGG + Chr4:54900964-54900983 MsG0480021190.01.T01:CDS 45.0%
ATAGAGGTCCTTGGATGTTG+TGG - Chr4:54901142-54901161 None:intergenic 45.0%
ATTGCTTTGCAGCTTATGCG+GGG + Chr4:54902108-54902127 MsG0480021190.01.T01:intron 45.0%
CAACGTCCCAAGTTTCACTT+TGG - Chr4:54900974-54900993 None:intergenic 45.0%
CAATTTGATATTCCCGGGAG+CGG - Chr4:54904321-54904340 None:intergenic 45.0%
CATAGGGCGTAAGTGTATTC+CGG + Chr4:54901044-54901063 MsG0480021190.01.T01:intron 45.0%
CATCACTCTGTTGTCAAACG+CGG + Chr4:54904284-54904303 MsG0480021190.01.T01:intron 45.0%
CATTTCACCAAAGGTTAGGC+CGG + Chr4:54901848-54901867 MsG0480021190.01.T01:intron 45.0%
CGAGTAAGCATCTCGTCATT+AGG + Chr4:54903690-54903709 MsG0480021190.01.T01:intron 45.0%
CGGAAAATGTAATCCGGACT+AGG + Chr4:54902235-54902254 MsG0480021190.01.T01:intron 45.0%
CTCCCGGGAATATCAAATTG+TGG + Chr4:54904321-54904340 MsG0480021190.01.T01:intron 45.0%
CTCTCTCAGGTAGGGATATT+CGG + Chr4:54902665-54902684 MsG0480021190.01.T01:intron 45.0%
GAAACTTGGGACGTTGTGTA+TGG + Chr4:54900978-54900997 MsG0480021190.01.T01:CDS 45.0%
GAACCATTCTCATCTCAGTG+GGG - Chr4:54904142-54904161 None:intergenic 45.0%
GAGAACCATTCTCATCTCAG+TGG - Chr4:54904144-54904163 None:intergenic 45.0%
GAGGAAAAGATTGACCCAAG+GGG - Chr4:54904217-54904236 None:intergenic 45.0%
GATGTGCCATCCCTACTTAA+AGG + Chr4:54904890-54904909 MsG0480021190.01.T01:three_prime_UTR 45.0%
GCAATCCGGATTACGTATTC+CGG + Chr4:54900926-54900945 MsG0480021190.01.T01:CDS 45.0%
GCTGTCCCAAAGTGAAACTT+GGG + Chr4:54900965-54900984 MsG0480021190.01.T01:CDS 45.0%
GGAGGAAAAGATTGACCCAA+GGG - Chr4:54904218-54904237 None:intergenic 45.0%
GTATTCCGGAAAACGTACTC+CGG + Chr4:54901058-54901077 MsG0480021190.01.T01:intron 45.0%
GTCGAATTGTGGACTTGCAA+GGG + Chr4:54905833-54905852 MsG0480021190.01.T01:three_prime_UTR 45.0%
TAACATGTCAGTTGACAGGC+CGG + Chr4:54901564-54901583 MsG0480021190.01.T01:intron 45.0%
TAGTTAGCAGGTAGTCATGG+GGG - Chr4:54903021-54903040 None:intergenic 45.0%
TATGTGGTCCACAACATCCA+AGG + Chr4:54901131-54901150 MsG0480021190.01.T01:intron 45.0%
TGAGGACGAATGGTTTGAGT+TGG + Chr4:54904856-54904875 MsG0480021190.01.T01:three_prime_UTR 45.0%
TGGAGGAAAAGATTGACCCA+AGG - Chr4:54904219-54904238 None:intergenic 45.0%
! GCGTTCCGGATTGTATTTTC+CGG + Chr4:54901797-54901816 MsG0480021190.01.T01:intron 45.0%
! GGGAGAGTATGCTGAAATCA+GGG - Chr4:54903910-54903929 None:intergenic 45.0%
! GTATCGAGCTGAGCTTCTTT+TGG + Chr4:54903414-54903433 MsG0480021190.01.T01:CDS 45.0%
! TCATTCCGGAGTACGTTTTC+CGG - Chr4:54901066-54901085 None:intergenic 45.0%
!! ACCCTCAGTAACATTTTGGC+CGG + Chr4:54901822-54901841 MsG0480021190.01.T01:intron 45.0%
!! GAAAGCATTGTCCCACAGTT+TGG + Chr4:54904943-54904962 MsG0480021190.01.T01:three_prime_UTR 45.0%
!! GAGGGTTGGTTCAGATTGTT+CGG + Chr4:54901002-54901021 MsG0480021190.01.T01:CDS 45.0%
!! GGTGTGTTTGCGTGTTTTGA+TGG - Chr4:54901197-54901216 None:intergenic 45.0%
!! TTTGGGAAGGTGTTCGAAGA+GGG - Chr4:54901608-54901627 None:intergenic 45.0%
!!! ACTGGTTTTGGAGATGGAAG+TGG - Chr4:54904179-54904198 None:intergenic 45.0%
!!! CTGGTTTTGGAGATGGAAGT+GGG - Chr4:54904178-54904197 None:intergenic 45.0%
!!! GAGCATACTGGTTTTGGAGA+TGG - Chr4:54904185-54904204 None:intergenic 45.0%
!!! GTGTTACTTTTCCCACGCTA+TGG - Chr4:54902297-54902316 None:intergenic 45.0%
!!! TTTTGGGAAGGTGTTCGAAG+AGG - Chr4:54901609-54901628 None:intergenic 45.0%
!! ATATATTATTAAAATTCAAA+TGG - Chr4:54903663-54903682 None:intergenic 5.0%
!! CTAATTATTTATTTATTTAA+TGG + Chr4:54905699-54905718 MsG0480021190.01.T01:intron 5.0%
!! TATTCTAATTATTTATTTAA+TGG + Chr4:54905450-54905469 MsG0480021190.01.T01:intron 5.0%
!!! ATTTGAATTTTAATAATATA+TGG + Chr4:54903662-54903681 MsG0480021190.01.T01:intron 5.0%
!!! TGATATTTTATTTATTATTA+TGG + Chr4:54903571-54903590 MsG0480021190.01.T01:intron 5.0%
AATTGCAGGGGTCGTATGAG+CGG - Chr4:54902091-54902110 None:intergenic 50.0%
ACCATTCTCATCTCAGTGGG+GGG - Chr4:54904140-54904159 None:intergenic 50.0%
ACGTTGTGTATGGTGAGGGT+TGG + Chr4:54900988-54901007 MsG0480021190.01.T01:CDS 50.0%
ACTGACATGTTACGATCGGC+AGG - Chr4:54901556-54901575 None:intergenic 50.0%
ACTGTTGTGGCTGCAGCAAT+AGG + Chr4:54905631-54905650 MsG0480021190.01.T01:intron 50.0%
ATGCTCTTCTTCACACCCCT+TGG + Chr4:54904199-54904218 MsG0480021190.01.T01:intron 50.0%
ATTTCAGCATACTCTCCCCC+AGG + Chr4:54903912-54903931 MsG0480021190.01.T01:intron 50.0%
CACCGGCCAAAATGTTACTG+AGG - Chr4:54901827-54901846 None:intergenic 50.0%
CTCTCTCTCTCTCTCAGGTA+GGG + Chr4:54902657-54902676 MsG0480021190.01.T01:intron 50.0%
CTTTCTCATGCTGTCGCGAA+TGG + Chr4:54901256-54901275 MsG0480021190.01.T01:intron 50.0%
GGTCGAATTGTGGACTTGCA+AGG + Chr4:54905832-54905851 MsG0480021190.01.T01:three_prime_UTR 50.0%
TAAATGGACACGTGGCAGCA+GGG - Chr4:54904245-54904264 None:intergenic 50.0%
TCTCTCTCTCTCTCTCAGGT+AGG + Chr4:54902656-54902675 MsG0480021190.01.T01:intron 50.0%
TCTCTCTCTCTCTCTCTCTC+AGG + Chr4:54902646-54902665 MsG0480021190.01.T01:intron 50.0%
TGATATCCAGTAGACCGTGC+AGG + Chr4:54905420-54905439 MsG0480021190.01.T01:intron 50.0%
TGCTCTTCTTCACACCCCTT+GGG + Chr4:54904200-54904219 MsG0480021190.01.T01:intron 50.0%
TGGCATTTCGAGCTCAACCT+GGG - Chr4:54903932-54903951 None:intergenic 50.0%
TGGGACGTTGTGTATGGTGA+GGG + Chr4:54900984-54901003 MsG0480021190.01.T01:CDS 50.0%
TGTTATCCAGTAGACCGTGC+AGG + Chr4:54905135-54905154 MsG0480021190.01.T01:intron 50.0%
TTGCTTTGCAGCTTATGCGG+GGG + Chr4:54902109-54902128 MsG0480021190.01.T01:intron 50.0%
TTGGCATTTCGAGCTCAACC+TGG - Chr4:54903933-54903952 None:intergenic 50.0%
TTGGGACGTTGTGTATGGTG+AGG + Chr4:54900983-54901002 MsG0480021190.01.T01:CDS 50.0%
TTTGGAGATGGAAGTGGGAC+TGG - Chr4:54904173-54904192 None:intergenic 50.0%
! ATGTCATTTGGCAAGGCAGC+AGG + Chr4:54901430-54901449 MsG0480021190.01.T01:intron 50.0%
! GCTTTTGAACTCGATCCTGC+CGG - Chr4:54901586-54901605 None:intergenic 50.0%
! GGGGAGAGTATGCTGAAATC+AGG - Chr4:54903911-54903930 None:intergenic 50.0%
! GGGTGTGAAGAAGAGCATAC+TGG - Chr4:54904197-54904216 None:intergenic 50.0%
! TGGCTGCAGCAATAGGCTTT+TGG + Chr4:54905638-54905657 MsG0480021190.01.T01:intron 50.0%
AAATGGACACGTGGCAGCAG+GGG - Chr4:54904244-54904263 None:intergenic 55.0%
CCAAAGGTTAGGCCGGTTAG+TGG + Chr4:54901855-54901874 MsG0480021190.01.T01:intron 55.0%
CCACTAACCGGCCTAACCTT+TGG - Chr4:54901858-54901877 None:intergenic 55.0%
CGGAACGCATGCAGTTCTTC+CGG - Chr4:54901785-54901804 None:intergenic 55.0%
CGGAAGAACTGCATGCGTTC+CGG + Chr4:54901783-54901802 MsG0480021190.01.T01:intron 55.0%
CTAAATGGACACGTGGCAGC+AGG - Chr4:54904246-54904265 None:intergenic 55.0%
GCATTTCGAGCTCAACCTGG+GGG - Chr4:54903930-54903949 None:intergenic 55.0%
GGCATTTCGAGCTCAACCTG+GGG - Chr4:54903931-54903950 None:intergenic 55.0%
GGCCGGTGACATTTCACCAA+AGG + Chr4:54901839-54901858 MsG0480021190.01.T01:intron 55.0%
! TTTTTGCATGGCGCGCGAGA+AGG + Chr4:54902271-54902290 MsG0480021190.01.T01:intron 55.0%
ATGTCAGTTGACAGGCCGGC+AGG + Chr4:54901568-54901587 MsG0480021190.01.T01:intron 60.0%
CGGCGACAACGCAGAAACAC+AGG + Chr4:54902394-54902413 MsG0480021190.01.T01:intron 60.0%
GATCAGCCTGCACGGTCTAC+TGG - Chr4:54905144-54905163 None:intergenic 60.0%
GCCCCCCACTGAGATGAGAA+TGG + Chr4:54904136-54904155 MsG0480021190.01.T01:intron 60.0%
!! CTCAGTGGGGGGCATTCTCT+TGG - Chr4:54904129-54904148 None:intergenic 60.0%
ACGTGGCAGCAGGGGAATGG+AGG - Chr4:54904236-54904255 None:intergenic 65.0%
GACACGTGGCAGCAGGGGAA+TGG - Chr4:54904239-54904258 None:intergenic 65.0%
GCGCGAGAAGGCCATAGCGT+GGG + Chr4:54902283-54902302 MsG0480021190.01.T01:intron 65.0%
TGATATTCCCGGGAGCGGCG+CGG - Chr4:54904316-54904335 None:intergenic 65.0%
CGCGCGAGAAGGCCATAGCG+TGG + Chr4:54902282-54902301 MsG0480021190.01.T01:intron 70.0%
GATATTCCCGGGAGCGGCGC+GGG - Chr4:54904315-54904334 None:intergenic 70.0%
! TCCCGGGAGCGGCGCGGGAG+CGG - Chr4:54904310-54904329 None:intergenic 85.0%
! GCCGCTCCCGCGCCGCTCCC+GGG + Chr4:54904306-54904325 MsG0480021190.01.T01:intron 90.0%
! GGCCGCTCCCGCGCCGCTCC+CGG + Chr4:54904305-54904324 MsG0480021190.01.T01:intron 90.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54900924 54905855 54900924 ID=MsG0480021190.01;Name=MsG0480021190.01
Chr4 mRNA 54900924 54905855 54900924 ID=MsG0480021190.01.T01;Parent=MsG0480021190.01;Name=MsG0480021190.01.T01;_AED=0.38;_eAED=0.39;_QI=0|0.88|0.8|0.9|0.55|0.5|10|734|229
Chr4 exon 54900924 54901051 54900924 ID=MsG0480021190.01.T01:exon:18774;Parent=MsG0480021190.01.T01
Chr4 exon 54902509 54902585 54902509 ID=MsG0480021190.01.T01:exon:18775;Parent=MsG0480021190.01.T01
Chr4 exon 54902674 54902839 54902674 ID=MsG0480021190.01.T01:exon:18776;Parent=MsG0480021190.01.T01
Chr4 exon 54902916 54903049 54902916 ID=MsG0480021190.01.T01:exon:18777;Parent=MsG0480021190.01.T01
Chr4 exon 54903143 54903254 54903143 ID=MsG0480021190.01.T01:exon:18778;Parent=MsG0480021190.01.T01
Chr4 exon 54903381 54903531 54903381 ID=MsG0480021190.01.T01:exon:18779;Parent=MsG0480021190.01.T01
Chr4 exon 54904661 54905007 54904661 ID=MsG0480021190.01.T01:exon:18780;Parent=MsG0480021190.01.T01
Chr4 exon 54905196 54905285 54905196 ID=MsG0480021190.01.T01:exon:18781;Parent=MsG0480021190.01.T01
Chr4 exon 54905479 54905569 54905479 ID=MsG0480021190.01.T01:exon:18782;Parent=MsG0480021190.01.T01
Chr4 exon 54905728 54905855 54905728 ID=MsG0480021190.01.T01:exon:18783;Parent=MsG0480021190.01.T01
Chr4 CDS 54900924 54901051 54900924 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 CDS 54902509 54902585 54902509 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 CDS 54902674 54902839 54902674 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 CDS 54902916 54903049 54902916 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 CDS 54903143 54903254 54903143 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 CDS 54903381 54903453 54903381 ID=MsG0480021190.01.T01:cds;Parent=MsG0480021190.01.T01
Chr4 three_prime_UTR 54903454 54903531 54903454 ID=MsG0480021190.01.T01:three_prime_utr;Parent=MsG0480021190.01.T01
Chr4 three_prime_UTR 54904661 54905007 54904661 ID=MsG0480021190.01.T01:three_prime_utr;Parent=MsG0480021190.01.T01
Chr4 three_prime_UTR 54905196 54905285 54905196 ID=MsG0480021190.01.T01:three_prime_utr;Parent=MsG0480021190.01.T01
Chr4 three_prime_UTR 54905479 54905569 54905479 ID=MsG0480021190.01.T01:three_prime_utr;Parent=MsG0480021190.01.T01
Chr4 three_prime_UTR 54905728 54905855 54905728 ID=MsG0480021190.01.T01:three_prime_utr;Parent=MsG0480021190.01.T01
Gene Sequence

>MsG0480021190.01.T01

ATGCAATCCGGATTACGTATTCCGGAAAAAGACGATAATGAGCTGTCCCAAAGTGAAACTTGGGACGTTGTGTATGGTGAGGGTTGGTTCAGATTGTTCGGACTACGTAATCCGGAAAAACATAGGGCGGTTTTGTTTCAACAGGAGAAAATTATGCAATTTTTTGATTTTGAAAGAAAGATGAAGGTGAAGGAGGTTGAAATTTGTAGGGATATTCGGAATTTTTTGAAAAACTTTGATGAAGGAGATCGTACTGATGCGTCAAAACTATATAAAAAAGAATCGTTCAAACTAAAGCTAACGCCAAAGCCGATTTATCCAGATGACGATGATTATAAAACTAAAGTCATTGAAGTTGGAGGATTTAAAGGGAATTTCACAGCTGTTCATACTGGAACCTCGTTGAAATTTGATTTATCTGCTGACGACAACAATCCAATGTTTTATGCACTGAGCACAGTAGCGATAATTCACCCCCATGACTACCTGCTAACTAAACGTTTAGATCTATTCCACTCACTTTGTGATGGTTATACCGGCTATGAATTTGATTGTGAAGAAGGTTTTCTTGACGATGAGGGTAATGTTAAAGTAGAATTGCAGATTCAGATTCTTGGAGAAAATGTCTTCCAGCCTCTCCTTGTAAAGAAGTATCGAGCTGAGCTTCTTTTGGCTAATATGCATGTGTGA

Protein sequence

>MsG0480021190.01.T01

MQSGLRIPEKDDNELSQSETWDVVYGEGWFRLFGLRNPEKHRAVLFQQEKIMQFFDFERKMKVKEVEICRDIRNFLKNFDEGDRTDASKLYKKESFKLKLTPKPIYPDDDDYKTKVIEVGGFKGNFTAVHTGTSLKFDLSADDNNPMFYALSTVAIIHPHDYLLTKRLDLFHSLCDGYTGYEFDCEEGFLDDEGNVKVELQIQILGENVFQPLLVKKYRAELLLANMHV*