Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012187.01.T02 | XP_003598626.1 | 60 | 75 | 4 | 1 | 1 | 75 | 1 | 49 | 1.46E-16 | 83.6 |
| MsG0380012187.01.T01 | XP_013458995.1 | 94.488 | 127 | 4 | 1 | 1 | 124 | 1 | 127 | 8.99E-81 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012187.01.T01 | Q8L7A4 | 71.296 | 108 | 31 | 0 | 17 | 124 | 46 | 153 | 5.69E-52 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012187.01.T01 | A0A072UVE7 | 94.488 | 127 | 4 | 1 | 1 | 124 | 1 | 127 | 4.29e-81 | 251 |
| MsG0380012187.01.T02 | G7IYV8 | 60.000 | 75 | 4 | 1 | 1 | 75 | 1 | 49 | 6.97e-17 | 83.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047825.01 | MsG0380012187.01 | 0.813030 | 3.146369e-51 | 2.032025e-48 |
| MsG0080048178.01 | MsG0380012187.01 | 0.816422 | 5.575327e-52 | 3.948739e-49 |
| MsG0180000157.01 | MsG0380012187.01 | 0.808676 | 2.754684e-50 | 1.584840e-47 |
| MsG0180000585.01 | MsG0380012187.01 | 0.816026 | 6.836731e-52 | 4.790220e-49 |
| MsG0180000741.01 | MsG0380012187.01 | 0.802138 | 6.466122e-49 | 3.143322e-46 |
| MsG0180000797.01 | MsG0380012187.01 | 0.820994 | 5.110190e-53 | 4.106847e-50 |
| MsG0180000821.01 | MsG0380012187.01 | 0.838815 | 2.298206e-57 | 3.113798e-54 |
| MsG0180000822.01 | MsG0380012187.01 | 0.800829 | 1.199735e-48 | 5.641899e-46 |
| MsG0180000855.01 | MsG0380012187.01 | 0.818584 | 1.816018e-52 | 1.364811e-49 |
| MsG0180001043.01 | MsG0380012187.01 | 0.822008 | 2.980610e-53 | 2.464223e-50 |
| MsG0180001712.01 | MsG0380012187.01 | 0.812486 | 4.138008e-51 | 2.634480e-48 |
| MsG0180001922.01 | MsG0380012187.01 | 0.814134 | 1.798724e-51 | 1.197009e-48 |
| MsG0180002075.01 | MsG0380012187.01 | 0.832003 | 1.210930e-55 | 1.336309e-52 |
| MsG0180003190.01 | MsG0380012187.01 | 0.800592 | 1.340557e-48 | 6.266398e-46 |
| MsG0180003807.01 | MsG0380012187.01 | 0.812632 | 3.844598e-51 | 2.457063e-48 |
| MsG0180004437.01 | MsG0380012187.01 | 0.801793 | 7.612690e-49 | 3.668371e-46 |
| MsG0180005306.01 | MsG0380012187.01 | 0.803558 | 3.292484e-49 | 1.659766e-46 |
| MsG0180005354.01 | MsG0380012187.01 | 0.802774 | 4.782492e-49 | 2.362948e-46 |
| MsG0180005451.01 | MsG0380012187.01 | 0.805224 | 1.480221e-49 | 7.788034e-47 |
| MsG0180005507.01 | MsG0380012187.01 | 0.805321 | 1.412352e-49 | 7.449699e-47 |
| MsG0180005944.01 | MsG0380012187.01 | 0.800860 | 1.182351e-48 | 5.564721e-46 |
| MsG0180006025.01 | MsG0380012187.01 | 0.801014 | 1.099377e-48 | 5.194742e-46 |
| MsG0280010614.01 | MsG0380012187.01 | 0.803846 | 2.868160e-49 | 1.456590e-46 |
| MsG0280010816.01 | MsG0380012187.01 | 0.812170 | 4.851594e-51 | 3.062536e-48 |
| MsG0280011131.01 | MsG0380012187.01 | 0.804328 | 2.276761e-49 | 1.170597e-46 |
| MsG0280011293.01 | MsG0380012187.01 | 0.802307 | 5.971108e-49 | 2.915334e-46 |
| MsG0280011334.01 | MsG0380012187.01 | 0.811480 | 6.855393e-51 | 4.248332e-48 |
| MsG0380011663.01 | MsG0380012187.01 | 0.804601 | 1.997766e-49 | 1.034374e-46 |
| MsG0380011754.01 | MsG0380012187.01 | 0.801653 | 8.136787e-49 | 3.906809e-46 |
| MsG0380012020.01 | MsG0380012187.01 | 0.802245 | 6.147167e-49 | 2.996518e-46 |
| MsG0380012186.01 | MsG0380012187.01 | 0.846701 | 1.840597e-59 | 3.195437e-56 |
| MsG0380012187.01 | MsG0380013068.01 | 0.809218 | 2.108981e-50 | 1.231046e-47 |
| MsG0380012187.01 | MsG0380014576.01 | 0.806343 | 8.612333e-50 | 4.663194e-47 |
| MsG0380012187.01 | MsG0380014913.01 | 0.800228 | 1.590522e-48 | 7.366477e-46 |
| MsG0380012187.01 | MsG0380015893.01 | 0.824805 | 6.615142e-54 | 5.922296e-51 |
| MsG0380012187.01 | MsG0380015934.01 | 0.808073 | 3.705006e-50 | 2.098138e-47 |
| MsG0380012187.01 | MsG0380016227.01 | 0.808613 | 2.841764e-50 | 1.632196e-47 |
| MsG0380012187.01 | MsG0380017210.01 | 0.802993 | 4.310143e-49 | 2.141257e-46 |
| MsG0380012187.01 | MsG0380017229.01 | 0.819007 | 1.456040e-52 | 1.107271e-49 |
| MsG0380012187.01 | MsG0380017604.01 | 0.805327 | 1.408498e-49 | 7.430447e-47 |
| MsG0380012187.01 | MsG0380017941.01 | 0.807352 | 5.271768e-50 | 2.929764e-47 |
| MsG0380012187.01 | MsG0480019289.01 | 0.830515 | 2.811899e-55 | 2.969116e-52 |
| MsG0380012187.01 | MsG0480019871.01 | 0.806426 | 8.273161e-50 | 4.489083e-47 |
| MsG0380012187.01 | MsG0480020242.01 | 0.800992 | 1.111128e-48 | 5.247327e-46 |
| MsG0380012187.01 | MsG0480020445.01 | 0.808853 | 2.525380e-50 | 1.459684e-47 |
| MsG0380012187.01 | MsG0480020540.01 | 0.813650 | 2.299550e-51 | 1.510371e-48 |
| MsG0380012187.01 | MsG0480020719.01 | 0.844985 | 5.383941e-59 | 8.843765e-56 |
| MsG0380012187.01 | MsG0480020720.01 | 0.813042 | 3.127355e-51 | 2.020394e-48 |
| MsG0380012187.01 | MsG0480021900.01 | 0.830789 | 2.410158e-55 | 2.565659e-52 |
| MsG0380012187.01 | MsG0480022451.01 | 0.812290 | 4.567448e-51 | 2.892609e-48 |
| MsG0380012187.01 | MsG0480023099.01 | 0.807510 | 4.879840e-50 | 2.723169e-47 |
| MsG0380012187.01 | MsG0480023517.01 | 0.807717 | 4.410615e-50 | 2.474532e-47 |
| MsG0380012187.01 | MsG0480023554.01 | 0.824737 | 6.862445e-54 | 6.131691e-51 |
| MsG0380012187.01 | MsG0480023776.01 | 0.800708 | 1.269543e-48 | 5.951697e-46 |
| MsG0380012187.01 | MsG0580024114.01 | 0.815249 | 1.018516e-51 | 6.985312e-49 |
| MsG0380012187.01 | MsG0580024157.01 | 0.812903 | 3.354646e-51 | 2.159228e-48 |
| MsG0380012187.01 | MsG0580024581.01 | 0.802912 | 4.479793e-49 | 2.221112e-46 |
| MsG0380012187.01 | MsG0580025008.01 | 0.805386 | 1.368706e-49 | 7.231355e-47 |
| MsG0380012187.01 | MsG0580025278.01 | 0.831257 | 1.849907e-55 | 1.996522e-52 |
| MsG0380012187.01 | MsG0580025328.01 | 0.821266 | 4.424943e-53 | 3.582476e-50 |
| MsG0380012187.01 | MsG0580025907.01 | 0.804839 | 1.781606e-49 | 9.282195e-47 |
| MsG0380012187.01 | MsG0580027532.01 | 0.807384 | 5.189481e-50 | 2.886443e-47 |
| MsG0380012187.01 | MsG0580028526.01 | 0.809249 | 2.077645e-50 | 1.213735e-47 |
| MsG0380012187.01 | MsG0580029432.01 | 0.822067 | 2.887945e-53 | 2.391579e-50 |
| MsG0380012187.01 | MsG0580029628.01 | 0.804278 | 2.333028e-49 | 1.197950e-46 |
| MsG0380012187.01 | MsG0580029639.01 | 0.800511 | 1.392415e-48 | 6.495473e-46 |
| MsG0380012187.01 | MsG0580029758.01 | 0.806394 | 8.402950e-50 | 4.555656e-47 |
| MsG0380012187.01 | MsG0680030629.01 | 0.813094 | 3.045516e-51 | 1.970190e-48 |
| MsG0380012187.01 | MsG0680031459.01 | 0.836711 | 7.974873e-57 | 1.013277e-53 |
| MsG0380012187.01 | MsG0680031538.01 | 0.820087 | 8.255449e-53 | 6.469555e-50 |
| MsG0380012187.01 | MsG0680031654.01 | 0.801831 | 7.479700e-49 | 3.607767e-46 |
| MsG0380012187.01 | MsG0680033926.01 | 0.818850 | 1.580903e-52 | 1.196954e-49 |
| MsG0380012187.01 | MsG0680034655.01 | 0.803365 | 3.609774e-49 | 1.810512e-46 |
| MsG0380012187.01 | MsG0680035656.01 | 0.806760 | 7.032705e-50 | 3.848757e-47 |
| MsG0380012187.01 | MsG0780035958.01 | 0.806895 | 6.586454e-50 | 3.617115e-47 |
| MsG0380012187.01 | MsG0780036548.01 | 0.803192 | 3.920360e-49 | 1.957673e-46 |
| MsG0380012187.01 | MsG0780036630.01 | 0.833383 | 5.505514e-56 | 6.330070e-53 |
| MsG0380012187.01 | MsG0780036633.01 | 0.814829 | 1.262253e-51 | 8.559291e-49 |
| MsG0380012187.01 | MsG0780036635.01 | 0.843380 | 1.452359e-58 | 2.268406e-55 |
| MsG0380012187.01 | MsG0780038092.01 | 0.819217 | 1.304326e-52 | 9.975450e-50 |
| MsG0380012187.01 | MsG0780038644.01 | 0.811218 | 7.813966e-51 | 4.808919e-48 |
| MsG0380012187.01 | MsG0780039777.01 | 0.828081 | 1.096320e-54 | 1.078448e-51 |
| MsG0380012187.01 | MsG0780039875.01 | 0.842848 | 2.012346e-58 | 3.090363e-55 |
| MsG0380012187.01 | MsG0780040125.01 | 0.801460 | 8.911737e-49 | 4.258248e-46 |
| MsG0380012187.01 | MsG0780040389.01 | 0.803992 | 2.674675e-49 | 1.363441e-46 |
| MsG0380012187.01 | MsG0780040516.01 | 0.802803 | 4.716863e-49 | 2.332256e-46 |
| MsG0380012187.01 | MsG0780040591.01 | 0.815764 | 7.819671e-52 | 5.440094e-49 |
| MsG0380012187.01 | MsG0780040679.01 | 0.827392 | 1.604960e-54 | 1.547568e-51 |
| MsG0380012187.01 | MsG0780040726.01 | 0.808101 | 3.654374e-50 | 2.071022e-47 |
| MsG0380012187.01 | MsG0780040758.01 | 0.829478 | 5.033458e-55 | 5.157524e-52 |
| MsG0380012187.01 | MsG0780041671.01 | 0.821907 | 3.146159e-53 | 2.593763e-50 |
| MsG0380012187.01 | MsG0880042053.01 | 0.828626 | 8.098949e-55 | 8.094107e-52 |
| MsG0380012187.01 | MsG0880042078.01 | 0.807149 | 5.819516e-50 | 3.217066e-47 |
| MsG0380012187.01 | MsG0880042965.01 | 0.838180 | 3.352323e-57 | 4.454254e-54 |
| MsG0380012187.01 | MsG0880043522.01 | 0.800324 | 1.520523e-48 | 7.059730e-46 |
| MsG0380012187.01 | MsG0880045756.01 | 0.834592 | 2.741489e-56 | 3.268417e-53 |
| MsG0380012187.01 | MsG0880045803.01 | 0.823906 | 1.076338e-53 | 9.391321e-51 |
| MsG0380012187.01 | MsG0880046091.01 | 0.802585 | 5.233194e-49 | 2.573049e-46 |
| MsG0380012187.01 | MsG0880046244.01 | 0.828825 | 7.246768e-55 | 7.284254e-52 |
| MsG0380012187.01 | MsG0880046560.01 | 0.806130 | 9.552210e-50 | 5.144144e-47 |
| MsG0380012187.01 | MsG0880047019.01 | 0.806673 | 7.339614e-50 | 4.007556e-47 |
| MsG0380012187.01 | MsG0880047285.01 | -0.808916 | 2.448433e-50 | 1.417564e-47 |
| MsG0280006519.01 | MsG0380012187.01 | 0.804037 | 2.618524e-49 | 1.336300e-46 |
| MsG0280006682.01 | MsG0380012187.01 | 0.803178 | 3.945225e-49 | 1.969419e-46 |
| MsG0280006906.01 | MsG0380012187.01 | 0.815226 | 1.030439e-51 | 7.062769e-49 |
| MsG0280006935.01 | MsG0380012187.01 | 0.804342 | 2.261795e-49 | 1.163325e-46 |
| MsG0280007048.01 | MsG0380012187.01 | 0.801958 | 7.041523e-49 | 3.407302e-46 |
| MsG0280008295.01 | MsG0380012187.01 | 0.830053 | 3.646229e-55 | 3.798938e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012187.01.T02 | MTR_3g017500 | 60.000 | 75 | 4 | 1 | 1 | 75 | 1 | 49 | 1.77e-20 | 83.6 |
| MsG0380012187.01.T01 | MTR_3g017500 | 94.488 | 127 | 4 | 1 | 1 | 124 | 1 | 127 | 1.09e-84 | 251 |
| MsG0380012187.01.T01 | MTR_3g017500 | 75.796 | 157 | 5 | 1 | 1 | 124 | 1 | 157 | 9.03e-78 | 235 |
| MsG0380012187.01.T01 | MTR_8g038400 | 71.429 | 119 | 34 | 0 | 6 | 124 | 5 | 123 | 2.78e-60 | 189 |
| MsG0380012187.01.T01 | MTR_8g088320 | 51.402 | 107 | 52 | 0 | 18 | 124 | 9 | 115 | 9.20e-40 | 135 |
| MsG0380012187.01.T01 | MTR_2g030230 | 51.402 | 107 | 52 | 0 | 18 | 124 | 18 | 124 | 3.54e-39 | 134 |
| MsG0380012187.01.T01 | MTR_6g080710 | 52.381 | 84 | 39 | 1 | 21 | 104 | 19 | 101 | 1.44e-24 | 94.7 |
| MsG0380012187.01.T01 | MTR_2g080950 | 48.315 | 89 | 45 | 1 | 21 | 109 | 19 | 106 | 3.17e-22 | 90.9 |
| MsG0380012187.01.T01 | MTR_8g464390 | 50.588 | 85 | 41 | 1 | 21 | 105 | 19 | 102 | 8.51e-22 | 89.4 |
| MsG0380012187.01.T01 | MTR_8g100100 | 40.157 | 127 | 51 | 3 | 21 | 123 | 503 | 628 | 2.76e-20 | 85.5 |
| MsG0380012187.01.T01 | MTR_8g100100 | 40.157 | 127 | 51 | 3 | 21 | 123 | 497 | 622 | 2.93e-20 | 85.5 |
| MsG0380012187.01.T01 | MTR_7g020860 | 48.889 | 90 | 43 | 2 | 18 | 105 | 502 | 590 | 3.29e-20 | 85.1 |
| MsG0380012187.01.T01 | MTR_7g020860 | 52.381 | 84 | 37 | 2 | 24 | 105 | 508 | 590 | 4.21e-20 | 84.7 |
| MsG0380012187.01.T01 | MTR_8g067090 | 51.429 | 70 | 33 | 1 | 24 | 93 | 16 | 84 | 7.57e-20 | 83.6 |
| MsG0380012187.01.T01 | MTR_8g471120 | 51.429 | 70 | 33 | 1 | 24 | 93 | 16 | 84 | 7.57e-20 | 83.6 |
| MsG0380012187.01.T01 | MTR_1g069000 | 48.052 | 77 | 39 | 1 | 20 | 96 | 6 | 81 | 1.22e-19 | 83.6 |
| MsG0380012187.01.T01 | MTR_8g067080 | 51.429 | 70 | 33 | 1 | 24 | 93 | 16 | 84 | 1.31e-19 | 83.2 |
| MsG0380012187.01.T01 | MTR_8g067080 | 51.429 | 70 | 33 | 1 | 24 | 93 | 16 | 84 | 1.35e-19 | 83.2 |
| MsG0380012187.01.T01 | MTR_8g471110 | 51.429 | 70 | 33 | 1 | 24 | 93 | 16 | 84 | 1.35e-19 | 83.2 |
| MsG0380012187.01.T01 | MTR_7g099830 | 48.052 | 77 | 39 | 1 | 20 | 96 | 6 | 81 | 3.87e-19 | 82.0 |
| MsG0380012187.01.T01 | MTR_3g098680 | 45.455 | 88 | 45 | 2 | 18 | 103 | 497 | 583 | 3.43e-18 | 79.3 |
| MsG0380012187.01.T01 | MTR_4g074170 | 42.105 | 95 | 51 | 3 | 12 | 103 | 472 | 565 | 5.17e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012187.01.T01 | AT3G07940 | 71.296 | 108 | 31 | 0 | 17 | 124 | 46 | 153 | 6.75e-54 | 170 |
| MsG0380012187.01.T01 | AT3G07940 | 71.296 | 108 | 31 | 0 | 17 | 124 | 46 | 153 | 5.80e-53 | 171 |
| MsG0380012187.01.T01 | AT4G05330 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 7.25e-41 | 138 |
| MsG0380012187.01.T01 | AT4G05330 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 7.25e-41 | 138 |
| MsG0380012187.01.T01 | AT4G21160 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 1.07e-40 | 138 |
| MsG0380012187.01.T01 | AT4G21160 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 1.07e-40 | 138 |
| MsG0380012187.01.T01 | AT4G21160 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 1.07e-40 | 138 |
| MsG0380012187.01.T01 | AT4G21160 | 53.982 | 113 | 51 | 1 | 13 | 124 | 9 | 121 | 1.07e-40 | 138 |
| MsG0380012187.01.T01 | AT4G05330 | 56.250 | 80 | 35 | 0 | 45 | 124 | 7 | 86 | 1.16e-27 | 103 |
| MsG0380012187.01.T01 | AT3G17660 | 42.424 | 99 | 56 | 1 | 21 | 119 | 19 | 116 | 5.24e-25 | 94.0 |
| MsG0380012187.01.T01 | AT3G17660 | 42.424 | 99 | 56 | 1 | 21 | 119 | 19 | 116 | 1.38e-24 | 94.0 |
| MsG0380012187.01.T01 | AT3G17660 | 42.424 | 99 | 56 | 1 | 21 | 119 | 19 | 116 | 2.20e-24 | 94.0 |
| MsG0380012187.01.T01 | AT5G54310 | 51.190 | 84 | 40 | 1 | 21 | 104 | 19 | 101 | 3.15e-22 | 90.9 |
| MsG0380012187.01.T01 | AT5G13300 | 50.000 | 90 | 42 | 2 | 18 | 105 | 501 | 589 | 8.55e-21 | 87.0 |
| MsG0380012187.01.T01 | AT5G61980 | 52.941 | 85 | 37 | 2 | 18 | 100 | 498 | 581 | 8.89e-21 | 87.0 |
| MsG0380012187.01.T01 | AT2G35210 | 48.611 | 72 | 36 | 1 | 21 | 92 | 13 | 83 | 1.98e-19 | 82.4 |
| MsG0380012187.01.T01 | AT2G35210 | 50.725 | 69 | 33 | 1 | 24 | 92 | 16 | 83 | 3.55e-19 | 82.0 |
| MsG0380012187.01.T01 | AT2G37550 | 46.753 | 77 | 40 | 1 | 20 | 96 | 6 | 81 | 1.05e-18 | 80.9 |
| MsG0380012187.01.T01 | AT2G37550 | 46.753 | 77 | 40 | 1 | 20 | 96 | 6 | 81 | 1.05e-18 | 80.9 |
| MsG0380012187.01.T01 | AT3G53710 | 46.154 | 78 | 41 | 1 | 20 | 97 | 6 | 82 | 2.79e-18 | 79.7 |
| MsG0380012187.01.T01 | AT3G53710 | 46.154 | 78 | 41 | 1 | 20 | 97 | 6 | 82 | 2.79e-18 | 79.7 |
| MsG0380012187.01.T01 | AT3G53710 | 46.154 | 78 | 41 | 1 | 20 | 97 | 6 | 82 | 2.79e-18 | 79.7 |
| MsG0380012187.01.T01 | AT5G46750 | 50.725 | 69 | 33 | 1 | 24 | 92 | 16 | 83 | 7.43e-18 | 78.2 |
| MsG0380012187.01.T01 | AT3G17660 | 39.216 | 102 | 45 | 3 | 21 | 119 | 19 | 106 | 7.85e-18 | 76.3 |
| MsG0380012187.01.T01 | AT1G10870 | 40.909 | 110 | 49 | 3 | 29 | 123 | 478 | 586 | 1.55e-17 | 77.8 |
| MsG0380012187.01.T01 | AT1G10870 | 50.649 | 77 | 35 | 2 | 29 | 103 | 478 | 553 | 1.90e-17 | 77.4 |
| MsG0380012187.01.T01 | AT4G17890 | 49.275 | 69 | 34 | 1 | 24 | 92 | 19 | 86 | 2.45e-17 | 76.6 |
| MsG0380012187.01.T01 | AT4G17890 | 49.275 | 69 | 34 | 1 | 24 | 92 | 19 | 86 | 2.47e-17 | 76.6 |
| MsG0380012187.01.T01 | AT1G60860 | 51.351 | 74 | 33 | 2 | 29 | 100 | 307 | 379 | 7.40e-17 | 75.5 |
| MsG0380012187.01.T01 | AT1G60860 | 51.351 | 74 | 33 | 2 | 29 | 100 | 478 | 550 | 7.53e-17 | 75.5 |
| MsG0380012187.01.T01 | AT1G60860 | 51.351 | 74 | 33 | 2 | 29 | 100 | 367 | 439 | 9.09e-17 | 75.5 |
Find 56 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAATGTAACAATTAAA+AGG | 0.154257 | 3:+12388297 | None:intergenic |
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3:+12388090 | None:intergenic |
| TATTTCCTCCACTTGAAATT+AGG | 0.226494 | 3:+12390471 | None:intergenic |
| TTTGTCAGAAATATATTCTT+TGG | 0.235295 | 3:-12390664 | MsG0380012187.01.T01:five_prime_UTR |
| ATAGTGACATTCCTTGATTT+TGG | 0.250360 | 3:-12390208 | MsG0380012187.01.T01:five_prime_UTR |
| GTTTCAAATATTTGAGGATA+TGG | 0.252120 | 3:-12390186 | MsG0380012187.01.T01:exon |
| CATTCATTACATCACTTTGA+TGG | 0.323512 | 3:+12390079 | None:intergenic |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3:-12388104 | MsG0380012187.01.T01:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3:+12387023 | None:intergenic |
| ACGAACGTACCTTAGATATA+TGG | 0.348879 | 3:+12387260 | None:intergenic |
| AAATTAAATGTCTCAATTGT+AGG | 0.370105 | 3:-12388418 | MsG0380012187.01.T01:intron |
| AACATCAGGTCTTCAAGTCT+TGG | 0.381673 | 3:-12387331 | MsG0380012187.01.T01:intron |
| CCTAGGAGTCCATATATCTA+AGG | 0.390014 | 3:-12387269 | MsG0380012187.01.T01:intron |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3:-12388328 | MsG0380012187.01.T01:intron |
| GATAAATGTAACAATTAAAA+GGG | 0.416251 | 3:+12388298 | None:intergenic |
| TTGAAGGATATGGAAATGAT+TGG | 0.429700 | 3:+12390742 | None:intergenic |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3:+12387017 | None:intergenic |
| AGTCGATTCATTGGTCAACT+TGG | 0.444047 | 3:-12387105 | MsG0380012187.01.T01:CDS |
| ATTCATTACATCACTTTGAT+GGG | 0.452563 | 3:+12390080 | None:intergenic |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3:-12387304 | MsG0380012187.01.T01:CDS |
| AATGTCTCAATTGTAGGGTC+AGG | 0.472521 | 3:-12388412 | MsG0380012187.01.T01:intron |
| GACAATCTGATGCGTCAAGC+AGG | 0.474603 | 3:-12388147 | MsG0380012187.01.T01:CDS |
| AAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3:+12387007 | None:intergenic |
| AGACGAACAAGTCGATTCAT+TGG | 0.483436 | 3:-12387114 | MsG0380012187.01.T01:CDS |
| AATTAAATGTCTCAATTGTA+GGG | 0.491860 | 3:-12388417 | MsG0380012187.01.T01:intron |
| GGAAGGAAGAATGAGGGAAA+AGG | 0.498880 | 3:+12390105 | None:intergenic |
| TGACTTTGAGAATTTAAACT+TGG | 0.501348 | 3:+12388352 | None:intergenic |
| CATCACTTTGATGGGGAGGA+AGG | 0.502603 | 3:+12390088 | None:intergenic |
| AATATTTGAAACCAAAATCA+AGG | 0.504727 | 3:+12390197 | None:intergenic |
| GATTCATTGGTCAACTTGGG+TGG | 0.513627 | 3:-12387101 | MsG0380012187.01.T01:CDS |
| TTTATCTTCATGCAGAGAAA+GGG | 0.515426 | 3:-12390259 | MsG0380012187.01.T01:intron |
| ATGGGGAGGAAGGAAGAATG+AGG | 0.522838 | 3:+12390098 | None:intergenic |
| CCTTAGATATATGGACTCCT+AGG | 0.529324 | 3:+12387269 | None:intergenic |
| GTCGATTCATTGGTCAACTT+GGG | 0.529688 | 3:-12387104 | MsG0380012187.01.T01:CDS |
| TGAAATTAGGCATGAGCCAA+TGG | 0.532679 | 3:+12390484 | None:intergenic |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3:-12388103 | MsG0380012187.01.T01:CDS |
| AAGGATATGGAAATGATTGG+AGG | 0.542895 | 3:+12390745 | None:intergenic |
| TCTGAAATCAATGGTATACC+AGG | 0.560420 | 3:-12390143 | MsG0380012187.01.T01:intron |
| CAGTGCAAAAGAGATCATAA+AGG | 0.562906 | 3:+12388380 | None:intergenic |
| TGTAGAGAATAAGCTGCCAT+TGG | 0.563081 | 3:-12390500 | MsG0380012187.01.T01:intron |
| GATCACTAGGTCCACAGGAA+AGG | 0.571277 | 3:-12388173 | MsG0380012187.01.T01:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.576035 | 3:-12388123 | MsG0380012187.01.T01:CDS |
| CTTCCGATCACTAGGTCCAC+AGG | 0.578366 | 3:-12388178 | MsG0380012187.01.T01:intron |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3:-12387021 | MsG0380012187.01.T01:CDS |
| GGCTCATGCCTAATTTCAAG+TGG | 0.582598 | 3:-12390479 | MsG0380012187.01.T01:five_prime_UTR |
| ATTACATCACTTTGATGGGG+AGG | 0.583333 | 3:+12390084 | None:intergenic |
| TGTCACTGAATCTAGATGAA+TGG | 0.584411 | 3:-12387139 | MsG0380012187.01.T01:CDS |
| TCTGGTATACATAGAAGCCT+AGG | 0.599149 | 3:-12387286 | MsG0380012187.01.T01:CDS |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3:+12388162 | None:intergenic |
| CTCAAAGTCAAAGAGAGCGA+TGG | 0.600889 | 3:-12388339 | MsG0380012187.01.T01:intron |
| TGGGGAGGAAGGAAGAATGA+GGG | 0.601744 | 3:+12390099 | None:intergenic |
| TTCATTACATCACTTTGATG+GGG | 0.610820 | 3:+12390081 | None:intergenic |
| ACAATCTGATGCGTCAAGCA+GGG | 0.621759 | 3:-12388146 | MsG0380012187.01.T01:CDS |
| AGAAAGGGTTGATAAATACA+TGG | 0.625834 | 3:-12390244 | MsG0380012187.01.T01:five_prime_UTR |
| AGGAATGTCACTATAATCTG+AGG | 0.645784 | 3:+12390217 | None:intergenic |
| TCATGCCTAATTTCAAGTGG+AGG | 0.646065 | 3:-12390476 | MsG0380012187.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATCAAAACTAAAT+TGG | + | Chr3:12389936-12389955 | None:intergenic | 10.0% |
| !! | ATAATTTAAAAAAATAGAAG+TGG | + | Chr3:12388005-12388024 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | - | Chr3:12388405-12388424 | MsG0380012187.01.T01:intron | 10.0% |
| !!! | TTTTGAATTTTAAGTTAATT+AGG | - | Chr3:12388404-12388423 | MsG0380012187.01.T01:intron | 10.0% |
| !! | AAATTAAACATGATCTATTA+GGG | - | Chr3:12388669-12388688 | MsG0380012187.01.T01:intron | 15.0% |
| !! | ACAGATAATTTATTATAGAT+AGG | + | Chr3:12388700-12388719 | None:intergenic | 15.0% |
| !! | ATTGAAAAAAACATGAAAAA+TGG | + | Chr3:12387366-12387385 | None:intergenic | 15.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | + | Chr3:12389451-12389470 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | + | Chr3:12389452-12389471 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | + | Chr3:12390251-12390270 | None:intergenic | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | - | Chr3:12389328-12389347 | MsG0380012187.01.T01:intron | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | + | Chr3:12388458-12388477 | None:intergenic | 20.0% |
| !! | AATTAAATGTCTCAATTGTA+GGG | - | Chr3:12389329-12389348 | MsG0380012187.01.T01:intron | 20.0% |
| !! | AGAAAATCAAAATCAAAACA+TGG | + | Chr3:12387193-12387212 | None:intergenic | 20.0% |
| !! | ATAATAAATTATCTGTGATC+AGG | - | Chr3:12388704-12388723 | MsG0380012187.01.T01:intron | 20.0% |
| !! | ATTGTCAATTAATTCTGAAT+AGG | + | Chr3:12390330-12390349 | None:intergenic | 20.0% |
| !! | GAAATTAAACATGATCTATT+AGG | - | Chr3:12388668-12388687 | MsG0380012187.01.T01:intron | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | + | Chr3:12389117-12389136 | None:intergenic | 20.0% |
| !! | TAGATATATTGTATTGTTGT+CGG | - | Chr3:12387883-12387902 | MsG0380012187.01.T01:intron | 20.0% |
| !! | TTCAGTGTAATTAAATTTGT+CGG | + | Chr3:12388303-12388322 | None:intergenic | 20.0% |
| !! | TTTGTCAGAAATATATTCTT+TGG | - | Chr3:12387082-12387101 | MsG0380012187.01.T01:CDS | 20.0% |
| !!! | AACTCGACTTTTTTTTTATA+AGG | + | Chr3:12389094-12389113 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACCAAAATCA+AGG | + | Chr3:12387552-12387571 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | - | Chr3:12388496-12388515 | MsG0380012187.01.T01:intron | 20.0% |
| !!! | ACATGGTTTTTATGAATTAA+TGG | + | Chr3:12387176-12387195 | None:intergenic | 20.0% |
| !!! | AGTTTATGATTTTGATTTGA+AGG | + | Chr3:12387023-12387042 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTCAAATATTTG+AGG | - | Chr3:12387554-12387573 | MsG0380012187.01.T01:intron | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | - | Chr3:12388497-12388516 | MsG0380012187.01.T01:intron | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | + | Chr3:12389978-12389997 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | + | Chr3:12388914-12388933 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | + | Chr3:12389979-12389998 | None:intergenic | 20.0% |
| ! | ACATGATTTGACATGATTAT+AGG | - | Chr3:12390581-12390600 | MsG0380012187.01.T01:intron | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | - | Chr3:12389468-12389487 | MsG0380012187.01.T01:intron | 25.0% |
| ! | ATTCATTACATCACTTTGAT+GGG | + | Chr3:12387669-12387688 | None:intergenic | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | - | Chr3:12388910-12388929 | MsG0380012187.01.T01:intron | 25.0% |
| ! | GTCAGTATAATTATATGTGT+CGG | + | Chr3:12388274-12388293 | None:intergenic | 25.0% |
| ! | GTTTCAAATATTTGAGGATA+TGG | - | Chr3:12387560-12387579 | MsG0380012187.01.T01:intron | 25.0% |
| ! | TAGTAAAGCAGAAACAATAA+AGG | + | Chr3:12389034-12389053 | None:intergenic | 25.0% |
| ! | TCAGTATAATTATATGTGTC+GGG | + | Chr3:12388273-12388292 | None:intergenic | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | - | Chr3:12388449-12388468 | MsG0380012187.01.T01:intron | 25.0% |
| !! | AATTTGTTTATCCAAACATG+GGG | + | Chr3:12389977-12389996 | None:intergenic | 25.0% |
| !! | ACTTTGAGAATTTAAACTTG+AGG | - | Chr3:12389065-12389084 | MsG0380012187.01.T01:intron | 25.0% |
| !! | CAAGAAAAATCTGAAATCAA+TGG | - | Chr3:12387594-12387613 | MsG0380012187.01.T01:intron | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | + | Chr3:12389082-12389063 | None:intergenic | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | + | Chr3:12388657-12388676 | None:intergenic | 25.0% |
| !! | TTTCTCAAGACATCTTTTAT+TGG | - | Chr3:12388733-12388752 | MsG0380012187.01.T01:intron | 25.0% |
| !! | TTTTAAACTATTATCCGTGT+CGG | + | Chr3:12387839-12387858 | None:intergenic | 25.0% |
| !!! | TGATTTTGATTTGAAGGATA+TGG | + | Chr3:12387017-12387036 | None:intergenic | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | - | Chr3:12389725-12389744 | MsG0380012187.01.T01:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | + | Chr3:12390708-12390727 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATCAATCTCTGA+GGG | + | Chr3:12387119-12387138 | None:intergenic | 25.0% |
| !!! | TTTTTTCAAATCAATCTCTG+AGG | + | Chr3:12387120-12387139 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | - | Chr3:12390073-12390092 | MsG0380012187.01.T01:intron | 25.0% |
| AAACTATACAAATCATGCTG+CGG | + | Chr3:12389892-12389911 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | + | Chr3:12389782-12389801 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | - | Chr3:12388420-12388439 | MsG0380012187.01.T01:intron | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | + | Chr3:12389537-12389556 | None:intergenic | 30.0% | |
| CATCAAAGTGATGTAATGAA+TGG | - | Chr3:12387668-12387687 | MsG0380012187.01.T01:intron | 30.0% | |
| CATGTTTAACCAAAACAAAG+AGG | + | Chr3:12388124-12388143 | None:intergenic | 30.0% | |
| CATTCATTACATCACTTTGA+TGG | + | Chr3:12387670-12387689 | None:intergenic | 30.0% | |
| CCTTTCTCTTATGTAGAAAT+GGG | + | Chr3:12389192-12389211 | None:intergenic | 30.0% | |
| CTTCAAATTAAAGTTGTGTC+AGG | + | Chr3:12388974-12388993 | None:intergenic | 30.0% | |
| CTTTCTCTTATGTAGAAATG+GGG | + | Chr3:12389191-12389210 | None:intergenic | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | - | Chr3:12387701-12387720 | MsG0380012187.01.T01:intron | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | + | Chr3:12389538-12389557 | None:intergenic | 30.0% | |
| TATTTCCTCCACTTGAAATT+AGG | + | Chr3:12387278-12387297 | None:intergenic | 30.0% | |
| TCCTTTCTCTTATGTAGAAA+TGG | + | Chr3:12389193-12389212 | None:intergenic | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | + | Chr3:12389801-12389820 | None:intergenic | 30.0% | |
| TCTCTGCATGAAGATAAAAA+GGG | + | Chr3:12387485-12387504 | None:intergenic | 30.0% | |
| TTCATTACATCACTTTGATG+GGG | + | Chr3:12387668-12387687 | None:intergenic | 30.0% | |
| TTCTCTGCATGAAGATAAAA+AGG | + | Chr3:12387486-12387505 | None:intergenic | 30.0% | |
| TTGAAGGATATGGAAATGAT+TGG | + | Chr3:12387007-12387026 | None:intergenic | 30.0% | |
| TTGACTTATTTAAGCTGATC+TGG | + | Chr3:12390166-12390185 | None:intergenic | 30.0% | |
| TTGCATTAGTCACTACTATA+TGG | + | Chr3:12388552-12388571 | None:intergenic | 30.0% | |
| TTTATCTTCATGCAGAGAAA+GGG | - | Chr3:12387487-12387506 | MsG0380012187.01.T01:intron | 30.0% | |
| ! | AGGTATAGAAAGTTTTTACC+TGG | + | Chr3:12387624-12387643 | None:intergenic | 30.0% |
| ! | AGTTGAAATTGATAGTCCTA+AGG | + | Chr3:12389835-12389854 | None:intergenic | 30.0% |
| ! | ATAGTGACATTCCTTGATTT+TGG | - | Chr3:12387538-12387557 | MsG0380012187.01.T01:intron | 30.0% |
| ! | ATCACAAGAAGTTTAGAATG+AGG | - | Chr3:12390281-12390300 | MsG0380012187.01.T01:intron | 30.0% |
| ! | GATCTGTAAGATTTTTCTGT+TGG | - | Chr3:12387306-12387325 | MsG0380012187.01.T01:CDS | 30.0% |
| ! | TTTTATCTTCATGCAGAGAA+AGG | - | Chr3:12387486-12387505 | MsG0380012187.01.T01:intron | 30.0% |
| !! | AGAAAGGGTTGATAAATACA+TGG | - | Chr3:12387502-12387521 | MsG0380012187.01.T01:intron | 30.0% |
| !! | ATTTGTAAGTTGAGTTTTCG+AGG | - | Chr3:12389130-12389149 | MsG0380012187.01.T01:intron | 30.0% |
| !! | GCATGTAAAGTTATTTCTGA+GGG | + | Chr3:12387060-12387079 | None:intergenic | 30.0% |
| !! | TGCATGTAAAGTTATTTCTG+AGG | + | Chr3:12387061-12387080 | None:intergenic | 30.0% |
| !! | TTTGTAAGTTGAGTTTTCGA+GGG | - | Chr3:12389131-12389150 | MsG0380012187.01.T01:intron | 30.0% |
| AAAACCGAATTCTTCCATTG+AGG | - | Chr3:12390725-12390744 | MsG0380012187.01.T01:five_prime_UTR | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | + | Chr3:12389490-12389509 | None:intergenic | 35.0% | |
| AAGGATATGGAAATGATTGG+AGG | + | Chr3:12387004-12387023 | None:intergenic | 35.0% | |
| AATTGAAGACGTGTATGTGT+TGG | - | Chr3:12387759-12387778 | MsG0380012187.01.T01:intron | 35.0% | |
| ACGAACGTACCTTAGATATA+TGG | + | Chr3:12390489-12390508 | None:intergenic | 35.0% | |
| ACGTTTAATTACCCCATGTT+TGG | - | Chr3:12389963-12389982 | MsG0380012187.01.T01:intron | 35.0% | |
| AGCAGAAACAATAAAGGAGA+CGG | + | Chr3:12389028-12389047 | None:intergenic | 35.0% | |
| AGCTTCTGATGTTTCTTGTA+TGG | - | Chr3:12388817-12388836 | MsG0380012187.01.T01:intron | 35.0% | |
| AGGAATGTCACTATAATCTG+AGG | + | Chr3:12387532-12387551 | None:intergenic | 35.0% | |
| ATAGGAAGTTTCATGTCTCA+AGG | + | Chr3:12390312-12390331 | None:intergenic | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | + | Chr3:12389369-12389388 | None:intergenic | 35.0% | |
| CCCATTTCTACATAAGAGAA+AGG | - | Chr3:12389189-12389208 | MsG0380012187.01.T01:intron | 35.0% | |
| GTGTATAATGGTATTTCGAC+AGG | - | Chr3:12389296-12389315 | MsG0380012187.01.T01:intron | 35.0% | |
| GTTTAACCAAAACAAAGAGG+AGG | + | Chr3:12388121-12388140 | None:intergenic | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | - | Chr3:12390207-12390226 | MsG0380012187.01.T01:five_prime_UTR | 35.0% | |
| TATGAAGCACAAACACTCTT+TGG | + | Chr3:12387934-12387953 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | + | Chr3:12389528-12389547 | None:intergenic | 35.0% | |
| TCACAAGTCAGAGTGTATAA+TGG | - | Chr3:12389284-12389303 | MsG0380012187.01.T01:intron | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | - | Chr3:12388218-12388237 | MsG0380012187.01.T01:intron | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | - | Chr3:12390607-12390626 | MsG0380012187.01.T01:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | - | Chr3:12390442-12390461 | MsG0380012187.01.T01:intron | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+AGG | + | Chr3:12388652-12388671 | None:intergenic | 35.0% | |
| ! | ACAAACACTCTTTGGATTAG+AGG | + | Chr3:12387926-12387945 | None:intergenic | 35.0% |
| ! | CAAGAAACATCAGAAGCTTT+TGG | + | Chr3:12388815-12388834 | None:intergenic | 35.0% |
| ! | GTGAATACTTACACCCATTT+TGG | + | Chr3:12389659-12389678 | None:intergenic | 35.0% |
| ! | TACTTTTCGTCTTTGAACCA+CGG | + | Chr3:12388383-12388402 | None:intergenic | 35.0% |
| ! | TCAATGGAAGAATTCGGTTT+TGG | + | Chr3:12390726-12390745 | None:intergenic | 35.0% |
| ! | TCTGAAATCAATGGTATACC+AGG | - | Chr3:12387603-12387622 | MsG0380012187.01.T01:intron | 35.0% |
| !! | TGAAGTGTCGATGTTAGATA+CGG | + | Chr3:12387739-12387758 | None:intergenic | 35.0% |
| AACATCAGGTCTTCAAGTCT+TGG | - | Chr3:12390415-12390434 | MsG0380012187.01.T01:intron | 40.0% | |
| AACCAAAACAAAGAGGAGGA+GGG | + | Chr3:12388117-12388136 | None:intergenic | 40.0% | |
| AAGTGACAGTGCTACATACA+AGG | - | Chr3:12388991-12389010 | MsG0380012187.01.T01:intron | 40.0% | |
| AATGTCTCAATTGTAGGGTC+AGG | - | Chr3:12389334-12389353 | MsG0380012187.01.T01:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | + | Chr3:12389587-12389606 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | + | Chr3:12390200-12390219 | None:intergenic | 40.0% | |
| AGTCACTACTATATGGTGCA+GGG | + | Chr3:12388545-12388564 | None:intergenic | 40.0% | |
| AGTGACAGTGCTACATACAA+GGG | - | Chr3:12388992-12389011 | MsG0380012187.01.T01:intron | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | + | Chr3:12388164-12388183 | None:intergenic | 40.0% | |
| ATTACATCACTTTGATGGGG+AGG | + | Chr3:12387665-12387684 | None:intergenic | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | - | Chr3:12390477-12390496 | MsG0380012187.01.T01:five_prime_UTR | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | + | Chr3:12390480-12390499 | None:intergenic | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | + | Chr3:12387982-12388001 | None:intergenic | 40.0% | |
| GAAACAATAAAGGAGACGGA+TGG | + | Chr3:12389024-12389043 | None:intergenic | 40.0% | |
| GCTCTTAGTAACATTGTCCT+CGG | - | Chr3:12390231-12390250 | MsG0380012187.01.T01:five_prime_UTR | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | + | Chr3:12390199-12390218 | None:intergenic | 40.0% | |
| GGTGTAGTATCTATGAAGCA+CGG | - | Chr3:12387780-12387799 | MsG0380012187.01.T01:intron | 40.0% | |
| TAACCAAAACAAAGAGGAGG+AGG | + | Chr3:12388118-12388137 | None:intergenic | 40.0% | |
| TAGTCACTACTATATGGTGC+AGG | + | Chr3:12388546-12388565 | None:intergenic | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | - | Chr3:12390460-12390479 | MsG0380012187.01.T01:five_prime_UTR | 40.0% | |
| TGAAATTAGGCATGAGCCAA+TGG | + | Chr3:12387265-12387284 | None:intergenic | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | - | Chr3:12389816-12389835 | MsG0380012187.01.T01:intron | 40.0% | |
| TGGATCATCAGAGCCAAAAT+GGG | - | Chr3:12389643-12389662 | MsG0380012187.01.T01:intron | 40.0% | |
| TGTAGAGAATAAGCTGCCAT+TGG | - | Chr3:12387246-12387265 | MsG0380012187.01.T01:intron | 40.0% | |
| TTAGCACTTGTGAGAGCTTA+TGG | + | Chr3:12390141-12390160 | None:intergenic | 40.0% | |
| TTCCTTGAGAAGGTTAGGAA+GGG | + | Chr3:12388647-12388666 | None:intergenic | 40.0% | |
| TTTCCTTGAGAAGGTTAGGA+AGG | + | Chr3:12388648-12388667 | None:intergenic | 40.0% | |
| ! | AGACGAACAAGTCGATTCAT+TGG | - | Chr3:12390632-12390651 | MsG0380012187.01.T01:five_prime_UTR | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | - | Chr3:12390641-12390660 | MsG0380012187.01.T01:five_prime_UTR | 40.0% |
| ! | GTAACTACATGTGTCGATGT+CGG | - | Chr3:12388945-12388964 | MsG0380012187.01.T01:intron | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | - | Chr3:12390642-12390661 | MsG0380012187.01.T01:five_prime_UTR | 40.0% |
| ! | TCATGCCTAATTTCAAGTGG+AGG | - | Chr3:12387270-12387289 | MsG0380012187.01.T01:CDS | 40.0% |
| !! | AACAAGTTCTGTGCTGATTG+TGG | - | Chr3:12389623-12389642 | MsG0380012187.01.T01:intron | 40.0% |
| !! | ACTAAGAGCACCTTACAAGT+AGG | + | Chr3:12390220-12390239 | None:intergenic | 40.0% |
| !! | GAAAAGCTTGACTTGCAAGA+AGG | - | Chr3:12389161-12389180 | MsG0380012187.01.T01:intron | 40.0% |
| !! | TCTTTGGATTAGAGGTGTTC+CGG | + | Chr3:12387918-12387937 | None:intergenic | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | - | Chr3:12390745-12390764 | MsG0380012187.01.T01:five_prime_UTR | 40.0% |
| AACCACACTAAGGGACTGTT+TGG | + | Chr3:12390190-12390209 | None:intergenic | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | - | Chr3:12389600-12389619 | MsG0380012187.01.T01:intron | 45.0% | |
| ACCAAAACAAAGAGGAGGAG+GGG | + | Chr3:12388116-12388135 | None:intergenic | 45.0% | |
| ACTGATACAGACACAGACAC+TGG | - | Chr3:12388866-12388885 | MsG0380012187.01.T01:intron | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | - | Chr3:12389418-12389437 | MsG0380012187.01.T01:intron | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | - | Chr3:12390185-12390204 | MsG0380012187.01.T01:exon | 45.0% | |
| ATCCCTTCCTAACCTTCTCA+AGG | - | Chr3:12388642-12388661 | MsG0380012187.01.T01:intron | 45.0% | |
| CAGCGCATTGTTTGAACATC+AGG | - | Chr3:12390401-12390420 | MsG0380012187.01.T01:intron | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | + | Chr3:12390732-12390751 | None:intergenic | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | - | Chr3:12389407-12389426 | MsG0380012187.01.T01:intron | 45.0% | |
| CTGATGTTCAAACAATGCGC+TGG | + | Chr3:12390403-12390422 | None:intergenic | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | + | Chr3:12389480-12389499 | None:intergenic | 45.0% | |
| GATACATGAGACACCAACAC+AGG | - | Chr3:12387966-12387985 | MsG0380012187.01.T01:intron | 45.0% | |
| GATAGTGCTAGACCAATCCA+TGG | - | Chr3:12388149-12388168 | MsG0380012187.01.T01:CDS | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | - | Chr3:12390645-12390664 | MsG0380012187.01.T01:five_prime_UTR | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | + | Chr3:12388169-12388188 | None:intergenic | 45.0% | |
| GGAAGGAAGAATGAGGGAAA+AGG | + | Chr3:12387644-12387663 | None:intergenic | 45.0% | |
| GGCTCATGCCTAATTTCAAG+TGG | - | Chr3:12387267-12387286 | MsG0380012187.01.T01:intron | 45.0% | |
| GTGACAGTGCTACATACAAG+GGG | - | Chr3:12388993-12389012 | MsG0380012187.01.T01:intron | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | - | Chr3:12389642-12389661 | MsG0380012187.01.T01:intron | 45.0% | |
| TCGTCTTTGAACCACGGATA+CGG | + | Chr3:12388377-12388396 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | - | Chr3:12389560-12389579 | MsG0380012187.01.T01:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | + | Chr3:12389574-12389593 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | + | Chr3:12390742-12390761 | None:intergenic | 45.0% |
| !!! | CTATTTTTTTAAATTATTAT+CGG | - | Chr3:12388008-12388027 | MsG0380012187.01.T01:intron | 5.0% |
| ACACGACATAGACACCGACA+CGG | - | Chr3:12387822-12387841 | MsG0380012187.01.T01:intron | 50.0% | |
| ACAGTGCTACATACAAGGGG+AGG | - | Chr3:12388996-12389015 | MsG0380012187.01.T01:intron | 50.0% | |
| ACATGAGACACCAACACAGG+TGG | - | Chr3:12387969-12387988 | MsG0380012187.01.T01:intron | 50.0% | |
| ACCAAGACACTCCTAATCCG+AGG | + | Chr3:12388249-12388268 | None:intergenic | 50.0% | |
| ATGAAGCACGGACACAGACA+TGG | - | Chr3:12387792-12387811 | MsG0380012187.01.T01:intron | 50.0% | |
| ATGGGGAGGAAGGAAGAATG+AGG | + | Chr3:12387651-12387670 | None:intergenic | 50.0% | |
| CAAGACACTCCTAATCCGAG+GGG | + | Chr3:12388247-12388266 | None:intergenic | 50.0% | |
| CATCACTTTGATGGGGAGGA+AGG | + | Chr3:12387661-12387680 | None:intergenic | 50.0% | |
| CCAAGACACTCCTAATCCGA+GGG | + | Chr3:12388248-12388267 | None:intergenic | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | - | Chr3:12389599-12389618 | MsG0380012187.01.T01:intron | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | - | Chr3:12389573-12389592 | MsG0380012187.01.T01:intron | 50.0% | |
| TATGAAACACGGACACCCCT+CGG | - | Chr3:12388229-12388248 | MsG0380012187.01.T01:intron | 50.0% | |
| TGGGGAGGAAGGAAGAATGA+GGG | + | Chr3:12387650-12387669 | None:intergenic | 50.0% | |
| TTGAACCACGGATACGGACA+TGG | + | Chr3:12388371-12388390 | None:intergenic | 50.0% | |
| !! | TCCCCTCCTCCTCTTTGTTT+TGG | - | Chr3:12388112-12388131 | MsG0380012187.01.T01:CDS | 50.0% |
| !! | TTGTTGTCGGTGTCAGACAC+CGG | - | Chr3:12387896-12387915 | MsG0380012187.01.T01:intron | 50.0% |
| ACGGACACAGACATGGACAC+CGG | - | Chr3:12387799-12387818 | MsG0380012187.01.T01:intron | 55.0% | |
| ACGGACATGGACACGGGATA+CGG | + | Chr3:12388358-12388377 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+GGG | + | Chr3:12388364-12388383 | None:intergenic | 55.0% | |
| CACGGATACGGACATGGACA+CGG | + | Chr3:12388365-12388384 | None:intergenic | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | - | Chr3:12389568-12389587 | MsG0380012187.01.T01:intron | 55.0% | |
| ! | GTCGGTGTCTATGTCGTGTC+CGG | + | Chr3:12387821-12387840 | None:intergenic | 55.0% |
| !! | CCCTCGGATTAGGAGTGTCT+TGG | - | Chr3:12388245-12388264 | MsG0380012187.01.T01:intron | 55.0% |
| ACACGGACACCCCTCGGATT+AGG | - | Chr3:12388235-12388254 | MsG0380012187.01.T01:intron | 60.0% | |
| CGTGTCCATGTCCGTATCCG+TGG | - | Chr3:12388363-12388382 | MsG0380012187.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 12386998 | 12390770 | 12386998 | ID=MsG0380012187.01;Name=MsG0380012187.01 |
| Chr3 | mRNA | 12386998 | 12390770 | 12386998 | ID=MsG0380012187.01.T01;Parent=MsG0380012187.01;Name=MsG0380012187.01.T01;_AED=0.47;_eAED=0.47;_QI=269|0.66|0.71|1|0|0|7|0|124 |
| Chr3 | exon | 12386998 | 12387165 | 12386998 | ID=MsG0380012187.01.T01:exon:2375;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12387270 | 12387345 | 12387270 | ID=MsG0380012187.01.T01:exon:2374;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12388102 | 12388186 | 12388102 | ID=MsG0380012187.01.T01:exon:2373;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12390144 | 12390266 | 12390144 | ID=MsG0380012187.01.T01:exon:2372;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12390458 | 12390517 | 12390458 | ID=MsG0380012187.01.T01:exon:2371;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12390608 | 12390692 | 12390608 | ID=MsG0380012187.01.T01:exon:2370;Parent=MsG0380012187.01.T01 |
| Chr3 | exon | 12390724 | 12390770 | 12390724 | ID=MsG0380012187.01.T01:exon:2369;Parent=MsG0380012187.01.T01 |
| Chr3 | five_prime_UTR | 12390724 | 12390770 | 12390724 | ID=MsG0380012187.01.T01:five_prime_utr;Parent=MsG0380012187.01.T01 |
| Chr3 | five_prime_UTR | 12390608 | 12390692 | 12390608 | ID=MsG0380012187.01.T01:five_prime_utr;Parent=MsG0380012187.01.T01 |
| Chr3 | five_prime_UTR | 12390458 | 12390517 | 12390458 | ID=MsG0380012187.01.T01:five_prime_utr;Parent=MsG0380012187.01.T01 |
| Chr3 | five_prime_UTR | 12390190 | 12390266 | 12390190 | ID=MsG0380012187.01.T01:five_prime_utr;Parent=MsG0380012187.01.T01 |
| Chr3 | CDS | 12390144 | 12390189 | 12390144 | ID=MsG0380012187.01.T01:cds;Parent=MsG0380012187.01.T01 |
| Chr3 | CDS | 12388102 | 12388186 | 12388102 | ID=MsG0380012187.01.T01:cds;Parent=MsG0380012187.01.T01 |
| Chr3 | CDS | 12387270 | 12387345 | 12387270 | ID=MsG0380012187.01.T01:cds;Parent=MsG0380012187.01.T01 |
| Chr3 | CDS | 12386998 | 12387165 | 12386998 | ID=MsG0380012187.01.T01:cds;Parent=MsG0380012187.01.T01 |
| Chr3 | mRNA | 12388312 | 12390189 | 12388312 | ID=MsG0380012187.01.T02;Parent=MsG0380012187.01;Name=MsG0380012187.01.T02;_AED=0.49;_eAED=0.69;_QI=0|0|0|1|0|0|2|0|79 |
| Chr3 | exon | 12390089 | 12390189 | 12390089 | ID=MsG0380012187.01.T02:exon:2377;Parent=MsG0380012187.01.T02 |
| Chr3 | exon | 12388312 | 12388450 | 12388312 | ID=MsG0380012187.01.T02:exon:2376;Parent=MsG0380012187.01.T02 |
| Chr3 | CDS | 12390089 | 12390189 | 12390089 | ID=MsG0380012187.01.T02:cds;Parent=MsG0380012187.01.T02 |
| Chr3 | CDS | 12388312 | 12388450 | 12388312 | ID=MsG0380012187.01.T02:cds;Parent=MsG0380012187.01.T02 |
| Gene Sequence |
| Protein sequence |
