AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046091.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046091.01.T01 MTR_4g099210 62.286 175 12 2 34 154 25 199 2.40e-58 181
MsG0880046091.01.T01 MTR_5g013560 52.663 169 34 2 32 154 19 187 4.26e-46 150
MsG0880046091.01.T01 MTR_3g060730 43.750 176 45 3 33 154 1 176 3.37e-34 119
MsG0880046091.01.T01 MTR_3g091440 41.420 169 45 2 34 148 27 195 1.02e-33 119
MsG0880046091.01.T01 MTR_5g096420 44.767 172 41 3 37 154 43 214 1.31e-33 119
MsG0880046091.01.T01 MTR_3g060730 44.186 172 42 3 37 154 43 214 5.66e-33 117
MsG0880046091.01.T01 MTR_4g134250 42.442 172 45 2 37 154 44 215 5.86e-33 117
MsG0880046091.01.T01 MTR_3g091440 39.583 192 56 4 17 148 3 194 1.16e-32 116
MsG0880046091.01.T01 MTR_2g027500 36.893 206 75 3 4 154 7 212 9.38e-32 114
MsG0880046091.01.T01 MTR_1g016430 42.197 173 46 2 36 154 98 270 1.43e-30 112
MsG0880046091.01.T01 MTR_2g027440 36.275 204 73 4 8 154 14 217 3.64e-30 110
MsG0880046091.01.T01 MTR_1g016430 43.023 172 44 3 37 154 1 172 1.52e-29 107
MsG0880046091.01.T01 MTR_4g113505 37.640 178 57 2 33 156 3 180 1.67e-29 108
MsG0880046091.01.T01 MTR_1g016430 43.023 172 44 3 37 154 67 238 3.10e-29 108
MsG0880046091.01.T01 MTR_8g099570 38.506 174 53 2 37 156 70 243 3.85e-29 108
MsG0880046091.01.T01 MTR_2g027480 38.953 172 51 2 37 154 46 217 7.21e-29 106
MsG0880046091.01.T01 MTR_8g099575 36.757 185 60 3 21 148 9 193 7.96e-29 106
MsG0880046091.01.T01 MTR_2g027520 39.535 172 50 2 37 154 48 219 2.70e-24 95.1
MsG0880046091.01.T01 MTR_8g027620 36.364 165 51 2 37 147 51 215 5.64e-22 90.5
MsG0880046091.01.T01 MTR_8g016170 33.721 172 60 2 37 154 73 244 5.64e-17 76.3
MsG0880046091.01.T01 MTR_8g016170 33.735 166 56 2 37 148 54 219 9.93e-17 74.7
MsG0880046091.01.T01 MTR_3g091440 62.500 48 18 0 37 84 29 76 6.80e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046091.01.T01 AT4G17615 52.601 173 28 2 34 152 25 197 1.37e-47 155
MsG0880046091.01.T01 AT4G17615 52.000 175 30 2 34 154 25 199 1.26e-46 152
MsG0880046091.01.T01 AT4G17615 52.000 175 30 2 34 154 25 199 1.26e-46 152
MsG0880046091.01.T01 AT4G17615 52.000 175 30 2 34 154 25 199 1.26e-46 152
MsG0880046091.01.T01 AT5G47100 51.429 175 31 2 34 154 25 199 9.48e-46 149
MsG0880046091.01.T01 AT5G24270 38.916 203 64 5 19 161 8 210 5.03e-33 117
MsG0880046091.01.T01 AT5G24270 38.916 203 64 5 19 161 8 210 5.03e-33 117
MsG0880046091.01.T01 AT5G24270 38.916 203 64 5 19 161 8 210 5.03e-33 117
MsG0880046091.01.T01 AT5G24270 40.000 180 54 3 36 161 6 185 2.52e-32 114
MsG0880046091.01.T01 AT4G26570 41.279 172 47 2 37 154 43 214 1.14e-31 114
MsG0880046091.01.T01 AT5G55990 43.605 172 43 3 37 154 43 214 3.25e-31 112
MsG0880046091.01.T01 AT5G55990 43.605 172 43 3 37 154 43 214 3.25e-31 112
MsG0880046091.01.T01 AT4G17615 76.056 71 17 0 84 154 87 157 5.64e-30 108
MsG0880046091.01.T01 AT4G26570 38.068 176 51 2 37 154 43 218 5.15e-29 107
MsG0880046091.01.T01 AT4G33000 38.372 172 52 2 37 154 64 235 1.38e-27 103
MsG0880046091.01.T01 AT4G33000 38.372 172 52 2 37 154 74 245 1.58e-27 103
MsG0880046091.01.T01 AT1G64480 35.714 168 54 2 37 150 32 199 1.77e-26 100
MsG0880046091.01.T01 AT1G64480 35.714 168 54 2 37 150 32 199 1.77e-26 100
MsG0880046091.01.T01 AT1G64480 35.714 168 54 2 37 150 32 199 1.77e-26 100
MsG0880046091.01.T01 AT1G64480 35.542 166 53 2 37 148 32 197 2.19e-26 99.8
MsG0880046091.01.T01 AT5G47100 80.392 51 10 0 34 84 25 75 9.87e-22 87.0
MsG0880046091.01.T01 AT5G24270 52.564 78 37 0 84 161 86 163 1.20e-20 84.3
MsG0880046091.01.T01 AT4G16350 37.209 172 50 4 37 154 41 208 5.97e-20 83.6
MsG0880046091.01.T01 AT4G16350 37.209 172 50 4 37 154 41 208 5.97e-20 83.6
MsG0880046091.01.T01 AT4G01420 31.707 164 58 2 39 148 29 192 2.59e-16 73.2
MsG0880046091.01.T01 AT4G01420 31.176 170 63 2 39 154 29 198 2.88e-16 73.2
MsG0880046091.01.T01 AT4G26560 35.606 132 61 4 42 154 76 202 2.78e-13 65.5
MsG0880046091.01.T01 AT4G33000 58.333 48 20 0 37 84 64 111 3.97e-12 61.2
MsG0880046091.01.T01 AT4G33000 58.333 48 20 0 37 84 64 111 7.57e-12 61.2
MsG0880046091.01.T01 AT4G33000 58.333 48 20 0 37 84 64 111 7.57e-12 61.2
MsG0880046091.01.T01 AT4G33000 58.333 48 20 0 37 84 64 111 7.71e-12 61.6

Find 28 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACCCGTGTATCAAATTT+TGG 0.171200 8:-68928090 MsG0880046091.01.T01:CDS
ATGTTATGGTGTTTCAATTT+GGG 0.273818 8:-68929390 None:intergenic
TATGTTATGGTGTTTCAATT+TGG 0.274615 8:-68929391 None:intergenic
TGAACATCATAATCATAATA+TGG 0.361655 8:+68926490 None:intergenic
AAGAAAATATCTTTGCAAAT+CGG 0.363808 8:-68927683 MsG0880046091.01.T01:CDS
TTGGGTTTGGATTGGATGAA+TGG 0.385037 8:-68929372 MsG0880046091.01.T01:CDS
TCTCATGATATATTTAAATC+AGG 0.388454 8:-68929346 MsG0880046091.01.T01:CDS
AGCAGTTCTGTTGTTGATGA+TGG 0.399714 8:-68928014 MsG0880046091.01.T01:CDS
AGAAAATATCTTTGCAAATC+GGG 0.419742 8:-68927682 MsG0880046091.01.T01:intron
ATGGTGTTTCAATTTGGGTT+TGG 0.428132 8:-68929385 MsG0880046091.01.T01:CDS
TGGGTTTGGATTGGATGAAT+GGG 0.428527 8:-68929371 MsG0880046091.01.T01:CDS
GTTTCAATTTGGGTTTGGAT+TGG 0.428590 8:-68929380 MsG0880046091.01.T01:CDS
TTTGCAGGAAGAATTTCAAT+TGG 0.442118 8:-68927727 MsG0880046091.01.T01:intron
CGAGTCTGAAATGAAGTTGG+CGG 0.474982 8:-68926878 MsG0880046091.01.T01:CDS
TAAATCAGGTAAACCTGCAC+TGG 0.495318 8:-68929332 MsG0880046091.01.T01:intron
TCCCTACCTAAGGTATGTGC+TGG 0.498354 8:-68926547 MsG0880046091.01.T01:CDS
TTTCGAGTCTGAAATGAAGT+TGG 0.499107 8:-68926881 MsG0880046091.01.T01:CDS
AATAGTCCAGCACATACCTT+AGG 0.516013 8:+68926541 None:intergenic
GAAACCAAAATTTGATACAC+GGG 0.558532 8:+68928086 None:intergenic
TCATGACACTTCCCTACCTA+AGG 0.559648 8:-68926557 MsG0880046091.01.T01:CDS
GATGCTGACTTGAACCAAGA+TGG 0.561233 8:-68926639 MsG0880046091.01.T01:CDS
GCAGTTCTGTTGTTGATGAT+GGG 0.573252 8:-68928013 MsG0880046091.01.T01:CDS
TCCAGCACATACCTTAGGTA+GGG 0.591653 8:+68926546 None:intergenic
TGAAACCAAAATTTGATACA+CGG 0.602597 8:+68928085 None:intergenic
GCACGGTACAGAACCAGTGC+AGG 0.604665 8:+68929319 None:intergenic
GTCCAGCACATACCTTAGGT+AGG 0.611062 8:+68926545 None:intergenic
TGATGATGGGCTAATAAGCA+AGG 0.637084 8:-68928000 MsG0880046091.01.T01:intron
GATAGAAACAATTCTAGACA+AGG 0.686128 8:-68926848 MsG0880046091.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAATGATAAAACTA+AGG - Chr8:68926834-68926853 MsG0880046091.01.T01:intron 10.0%
!! AAAATTATATCAATGAAAAG+AGG + Chr8:68928895-68928914 None:intergenic 15.0%
!! ATTTCATATCTAATATTCTA+TGG + Chr8:68929108-68929127 None:intergenic 15.0%
!! GAAATGTAATAACTTAATAA+GGG - Chr8:68927231-68927250 MsG0880046091.01.T01:intron 15.0%
!! AAAAAAACAACCATGATATT+CGG + Chr8:68927388-68927407 None:intergenic 20.0%
!! AAAAAAGCAATGTCTAATTA+AGG + Chr8:68929191-68929210 None:intergenic 20.0%
!! AAAGAAGTTGTAAAAGAAAA+TGG - Chr8:68927055-68927074 MsG0880046091.01.T01:intron 20.0%
!! AAATAAATAAGAAAGTTGCA+AGG + Chr8:68928386-68928405 None:intergenic 20.0%
!! AAGAAAATATCTTTGCAAAT+CGG - Chr8:68928184-68928203 MsG0880046091.01.T01:intron 20.0%
!! AATAAAAACATAACATTCAG+TGG + Chr8:68928822-68928841 None:intergenic 20.0%
!! AATAAGCTGAAAATAATCAA+TGG - Chr8:68927935-68927954 MsG0880046091.01.T01:intron 20.0%
!! GGAAATGTAATAACTTAATA+AGG - Chr8:68927230-68927249 MsG0880046091.01.T01:intron 20.0%
!! TCTCATGATATATTTAAATC+AGG - Chr8:68926521-68926540 MsG0880046091.01.T01:CDS 20.0%
!! TGAACATCATAATCATAATA+TGG + Chr8:68929380-68929399 None:intergenic 20.0%
!!! AAAAAGTTATTTCACAAGAA+TGG + Chr8:68928435-68928454 None:intergenic 20.0%
!!! AAATAACTTTTTCAATTGAC+TGG - Chr8:68928443-68928462 MsG0880046091.01.T01:intron 20.0%
!!! ATGTTTTCATATAGTAAACA+AGG + Chr8:68926860-68926879 None:intergenic 20.0%
!!! CAACTTTCTTATTTATTTCT+TGG - Chr8:68928388-68928407 MsG0880046091.01.T01:intron 20.0%
!!! TAAAGAATATAATTGATAGC+AGG + Chr8:68927456-68927475 None:intergenic 20.0%
!!! TATGAAAACATTTTCAGTTT+TGG - Chr8:68926869-68926888 MsG0880046091.01.T01:CDS 20.0%
!!! TTGTTTTAAAACTGTTAACA+AGG - Chr8:68926909-68926928 MsG0880046091.01.T01:CDS 20.0%
!!! TTTGTGCATTTTTTTCATTT+TGG - Chr8:68928060-68928079 MsG0880046091.01.T01:CDS 20.0%
! AAAATGTTATCTGGATTAAG+AGG + Chr8:68928042-68928061 None:intergenic 25.0%
! AAATGAAAAACATGAAGCAT+TGG - Chr8:68927128-68927147 MsG0880046091.01.T01:intron 25.0%
! AAATGCACAAAAATGTTATC+TGG + Chr8:68928051-68928070 None:intergenic 25.0%
! AATCCCAAACATAATATATC+AGG + Chr8:68928681-68928700 None:intergenic 25.0%
! AGAAAATATCTTTGCAAATC+GGG - Chr8:68928185-68928204 MsG0880046091.01.T01:intron 25.0%
! ATTTCTATCTTCAAAGAAAC+CGG + Chr8:68928350-68928369 None:intergenic 25.0%
! CATATGATATATCTCAACAT+GGG - Chr8:68927267-68927286 MsG0880046091.01.T01:intron 25.0%
! TCATATGATATATCTCAACA+TGG - Chr8:68927266-68927285 MsG0880046091.01.T01:intron 25.0%
! TGAAACCAAAATTTGATACA+CGG + Chr8:68927785-68927804 None:intergenic 25.0%
! TGTCCTGATATATTATGTTT+GGG - Chr8:68928675-68928694 MsG0880046091.01.T01:intron 25.0%
! TTAAGGTAAACAACAATAAG+TGG + Chr8:68928635-68928654 None:intergenic 25.0%
!! AATGGAAAATAATTGATAGC+AGG + Chr8:68927500-68927519 None:intergenic 25.0%
!! CATTTTCAGAAACAATGTTT+TGG - Chr8:68926997-68927016 MsG0880046091.01.T01:intron 25.0%
!! CTATCAATTATTTTCCATTG+TGG - Chr8:68927501-68927520 MsG0880046091.01.T01:intron 25.0%
!! TTTGAGTTTATATGCTTATG+AGG - Chr8:68926752-68926771 MsG0880046091.01.T01:intron 25.0%
!!! AATTAGACATTGCTTTTTTC+TGG - Chr8:68929192-68929211 MsG0880046091.01.T01:intron 25.0%
!!! TTTGGTTTTTTGTTAGAAGT+AGG - Chr8:68927200-68927219 MsG0880046091.01.T01:intron 25.0%
AAAATGTTTCCATCTTGTGA+TGG - Chr8:68927701-68927720 MsG0880046091.01.T01:CDS 30.0%
AACTCTGCATAAGAAATTGT+AGG - Chr8:68927901-68927920 MsG0880046091.01.T01:intron 30.0%
AATGGTAGTTATTGGATTGT+AGG - Chr8:68926701-68926720 MsG0880046091.01.T01:intron 30.0%
AATGTAAATTCACACTAAGC+AGG + Chr8:68926779-68926798 None:intergenic 30.0%
AATTTCTGACATCGTATCAA+TGG + Chr8:68928473-68928492 None:intergenic 30.0%
ACTATGAAGTTGACAAATAC+TGG + Chr8:68928296-68928315 None:intergenic 30.0%
ACTCTGCATAAGAAATTGTA+GGG - Chr8:68927902-68927921 MsG0880046091.01.T01:intron 30.0%
ACTTCATAGTTTATACACCT+AGG - Chr8:68928306-68928325 MsG0880046091.01.T01:intron 30.0%
AGAAACAAAATGAGACTTGT+TGG - Chr8:68927596-68927615 MsG0880046091.01.T01:intron 30.0%
AGATCAAAGTGAGGAATTTA+AGG + Chr8:68928652-68928671 None:intergenic 30.0%
AGATGAGAAAAATAAAGCCT+AGG + Chr8:68928326-68928345 None:intergenic 30.0%
AGTTGTAAAAGAAAATGGTG+AGG - Chr8:68927060-68927079 MsG0880046091.01.T01:intron 30.0%
ATAACAAATCCATCACAAGA+TGG + Chr8:68927713-68927732 None:intergenic 30.0%
ATTCGTTTCTTTCAGTGAAA+TGG - Chr8:68926683-68926702 MsG0880046091.01.T01:intron 30.0%
GAAAAATAGACATTGTTGAG+TGG - Chr8:68929250-68929269 MsG0880046091.01.T01:intron 30.0%
GAAAATGGTGAGGAATATAT+TGG - Chr8:68927070-68927089 MsG0880046091.01.T01:intron 30.0%
GAAACCAAAATTTGATACAC+GGG + Chr8:68927784-68927803 None:intergenic 30.0%
GATAGAAACAATTCTAGACA+AGG - Chr8:68929019-68929038 MsG0880046091.01.T01:intron 30.0%
GCTTAGTGTGAATTTACATT+TGG - Chr8:68926779-68926798 MsG0880046091.01.T01:intron 30.0%
GTAAACTAAACCGAATATCA+TGG - Chr8:68927375-68927394 MsG0880046091.01.T01:intron 30.0%
GTGTCCTGATATATTATGTT+TGG - Chr8:68928674-68928693 MsG0880046091.01.T01:intron 30.0%
TAAAACTGTTAACAAGGAGA+TGG - Chr8:68926915-68926934 MsG0880046091.01.T01:intron 30.0%
TAGTAACAATTGTGATACAG+AGG - Chr8:68926948-68926967 MsG0880046091.01.T01:intron 30.0%
TTACGCACATTTACAAAACA+CGG + Chr8:68927317-68927336 None:intergenic 30.0%
TTCAGTGAAATGGTAGTTAT+TGG - Chr8:68926693-68926712 MsG0880046091.01.T01:intron 30.0%
TTGATCTATTTGATGTCAAG+AGG - Chr8:68928508-68928527 MsG0880046091.01.T01:intron 30.0%
TTGCAGAGAACAAAAATTGA+TGG + Chr8:68928252-68928271 None:intergenic 30.0%
TTTCTATCTTCAAAGAAACC+GGG + Chr8:68928349-68928368 None:intergenic 30.0%
TTTGCAGGAAGAATTTCAAT+TGG - Chr8:68928140-68928159 MsG0880046091.01.T01:intron 30.0%
! TAAACCCGTGTATCAAATTT+TGG - Chr8:68927777-68927796 MsG0880046091.01.T01:intron 30.0%
! TTTTTGTTAGAAGTAGGCAA+AGG - Chr8:68927206-68927225 MsG0880046091.01.T01:intron 30.0%
!! ACTTGTTGGTTCATTTGTTT+CGG - Chr8:68927610-68927629 MsG0880046091.01.T01:intron 30.0%
!! ATCTTGTGATGGATTTGTTA+TGG - Chr8:68927712-68927731 MsG0880046091.01.T01:CDS 30.0%
!! ATGAAGCATTGGAGATAAAT+GGG - Chr8:68927139-68927158 MsG0880046091.01.T01:intron 30.0%
!! CAATGTCTATTTTTCCATCT+TGG + Chr8:68929245-68929264 None:intergenic 30.0%
!! TTGCTTTTCTTTCCCTTATT+TGG - Chr8:68928924-68928943 MsG0880046091.01.T01:intron 30.0%
!!! AAACGTGTCATTTTCATTGA+GGG + Chr8:68928793-68928812 None:intergenic 30.0%
AACAATATTTCTTCTGCAGG+TGG + Chr8:68929137-68929156 None:intergenic 35.0%
AATACCCATGATCACATTAC+AGG + Chr8:68928115-68928134 None:intergenic 35.0%
AGCAACAATATTTCTTCTGC+AGG + Chr8:68929140-68929159 None:intergenic 35.0%
AGGTAAACAACAATAAGTGG+AGG + Chr8:68928632-68928651 None:intergenic 35.0%
CAATTGTGATACAGAGGATA+TGG - Chr8:68926954-68926973 MsG0880046091.01.T01:intron 35.0%
CTATTTGATGTCAAGAGGAA+GGG - Chr8:68928513-68928532 MsG0880046091.01.T01:intron 35.0%
GAGATATATCATATGACAGC+AGG + Chr8:68927262-68927281 None:intergenic 35.0%
GCATTTGGAAGAGCTTATTT+CGG + Chr8:68928020-68928039 None:intergenic 35.0%
GTGGTTCAATTGAAATTGCT+GGG - Chr8:68927632-68927651 MsG0880046091.01.T01:intron 35.0%
TCTATTTGATGTCAAGAGGA+AGG - Chr8:68928512-68928531 MsG0880046091.01.T01:intron 35.0%
TGCAAACTGGCAATAACTTA+CGG + Chr8:68927165-68927184 None:intergenic 35.0%
TGTCAGACATCACCAAATAA+GGG + Chr8:68928939-68928958 None:intergenic 35.0%
TTAGCCTGTAATGTGATCAT+GGG - Chr8:68928108-68928127 MsG0880046091.01.T01:intron 35.0%
TTTAGCCTGTAATGTGATCA+TGG - Chr8:68928107-68928126 MsG0880046091.01.T01:intron 35.0%
! ATGGTGTTTCAATTTGGGTT+TGG - Chr8:68926482-68926501 MsG0880046091.01.T01:CDS 35.0%
! ATTTTCCTGCAGTCTCATTT+AGG - Chr8:68928698-68928717 MsG0880046091.01.T01:intron 35.0%
! CTAAGTGAACACTTTTGTTC+TGG - Chr8:68928843-68928862 MsG0880046091.01.T01:intron 35.0%
! CTCTATGATTTGCACAATAC+TGG - Chr8:68928721-68928740 MsG0880046091.01.T01:intron 35.0%
! GAAAGAAAGCAACCTTTTCT+GGG + Chr8:68927537-68927556 None:intergenic 35.0%
! GTCATGATTTTGAGCAATGA+AGG + Chr8:68929297-68929316 None:intergenic 35.0%
! GTTTCAATTTGGGTTTGGAT+TGG - Chr8:68926487-68926506 MsG0880046091.01.T01:CDS 35.0%
! TATGTGCTGGACTATTTTCA+TGG - Chr8:68929333-68929352 MsG0880046091.01.T01:CDS 35.0%
! TGAAAGAAAGCAACCTTTTC+TGG + Chr8:68927538-68927557 None:intergenic 35.0%
! TGCTTTTCTTCTACTCATTG+CGG - Chr8:68927350-68927369 MsG0880046091.01.T01:intron 35.0%
! TTTCGAGTCTGAAATGAAGT+TGG - Chr8:68928986-68929005 MsG0880046091.01.T01:intron 35.0%
!! CAGAACAAAAGTGTTCACTT+AGG + Chr8:68928845-68928864 None:intergenic 35.0%
!! CATGAAGCATTGGAGATAAA+TGG - Chr8:68927138-68927157 MsG0880046091.01.T01:intron 35.0%
!! TATCTGGATTAAGAGGCATT+TGG + Chr8:68928035-68928054 None:intergenic 35.0%
!!! CAAACGTGTCATTTTCATTG+AGG + Chr8:68928794-68928813 None:intergenic 35.0%
!!! GCTTTATTTTTCTCATCTCC+CGG - Chr8:68928328-68928347 MsG0880046091.01.T01:intron 35.0%
AACTGTTAACAAGGAGATGG+AGG - Chr8:68926918-68926937 MsG0880046091.01.T01:intron 40.0%
AAGTGAACTGTCTTGCAAAC+TGG + Chr8:68927178-68927197 None:intergenic 40.0%
AATAGTCCAGCACATACCTT+AGG + Chr8:68929329-68929348 None:intergenic 40.0%
ATATCATATGACAGCAGGTG+AGG + Chr8:68927257-68927276 None:intergenic 40.0%
CATGGGTATTCTTTCTTTGC+AGG - Chr8:68928125-68928144 MsG0880046091.01.T01:intron 40.0%
CGTGATTCTTGCATCACAAA+CGG - Chr8:68926649-68926668 MsG0880046091.01.T01:CDS 40.0%
CGTTTGTGATGCAAGAATCA+CGG + Chr8:68926651-68926670 None:intergenic 40.0%
CTCACCAACCAACCATAAAT+GGG - Chr8:68926579-68926598 MsG0880046091.01.T01:CDS 40.0%
CTGTCAGACATCACCAAATA+AGG + Chr8:68928940-68928959 None:intergenic 40.0%
GAGTTGAAACAGCCCATTTA+TGG + Chr8:68926594-68926613 None:intergenic 40.0%
GCAAGACAGTTCACTTTGTT+TGG - Chr8:68927182-68927201 MsG0880046091.01.T01:intron 40.0%
GGTGGTTCAATTGAAATTGC+TGG - Chr8:68927631-68927650 MsG0880046091.01.T01:intron 40.0%
GTTTGTGATGCAAGAATCAC+GGG + Chr8:68926650-68926669 None:intergenic 40.0%
TAAATCAGGTAAACCTGCAC+TGG - Chr8:68926535-68926554 MsG0880046091.01.T01:CDS 40.0%
TGAAACAGCCCATTTATGGT+TGG + Chr8:68926590-68926609 None:intergenic 40.0%
TTGACAAATACTGGAGCCAT+AGG + Chr8:68928287-68928306 None:intergenic 40.0%
TTGTTAGAAGTAGGCAAAGG+TGG - Chr8:68927209-68927228 MsG0880046091.01.T01:intron 40.0%
TTTCCAGGATACTGTCTTGT+TGG + Chr8:68926621-68926640 None:intergenic 40.0%
! AGCAGTTCTGTTGTTGATGA+TGG - Chr8:68927853-68927872 MsG0880046091.01.T01:intron 40.0%
! TCTCAACATGGGCTATATGA+AGG - Chr8:68927278-68927297 MsG0880046091.01.T01:intron 40.0%
! TGGGTTTGGATTGGATGAAT+GGG - Chr8:68926496-68926515 MsG0880046091.01.T01:CDS 40.0%
! TTGGGTTTGGATTGGATGAA+TGG - Chr8:68926495-68926514 MsG0880046091.01.T01:CDS 40.0%
!! CTTATTTGGTGATGTCTGAC+AGG - Chr8:68928938-68928957 MsG0880046091.01.T01:intron 40.0%
!! GCAGTTCTGTTGTTGATGAT+GGG - Chr8:68927854-68927873 MsG0880046091.01.T01:intron 40.0%
!! TGATGATGGGCTAATAAGCA+AGG - Chr8:68927867-68927886 MsG0880046091.01.T01:intron 40.0%
!! TGTTGGTTCATTTGTTTCGG+TGG - Chr8:68927613-68927632 MsG0880046091.01.T01:intron 40.0%
!! TTTTTCTGGCCAGACTTTCT+TGG - Chr8:68929206-68929225 MsG0880046091.01.T01:intron 40.0%
AAGCCAACAAGACAGTATCC+TGG - Chr8:68926615-68926634 MsG0880046091.01.T01:CDS 45.0%
ACAGCCCATTTATGGTTGGT+TGG + Chr8:68926586-68926605 None:intergenic 45.0%
AGAGCTTGTGACAACAGCTT+AGG + Chr8:68927967-68927986 None:intergenic 45.0%
AGCAATCATCATCTCACCTC+TGG + Chr8:68928760-68928779 None:intergenic 45.0%
AGGACACACAGATCAAAGTG+AGG + Chr8:68928661-68928680 None:intergenic 45.0%
AGTCAGCATCCAAGAAAGTC+TGG + Chr8:68929218-68929237 None:intergenic 45.0%
CAAGACAGTATCCTGGAAAG+AGG - Chr8:68926622-68926641 MsG0880046091.01.T01:CDS 45.0%
GCTCACCAACCAACCATAAA+TGG - Chr8:68926578-68926597 MsG0880046091.01.T01:CDS 45.0%
TAGAGCCTAAATGAGACTGC+AGG + Chr8:68928706-68928725 None:intergenic 45.0%
TCATGACACTTCCCTACCTA+AGG - Chr8:68929310-68929329 MsG0880046091.01.T01:intron 45.0%
TCCAGCACATACCTTAGGTA+GGG + Chr8:68929324-68929343 None:intergenic 45.0%
! CGAGTCTGAAATGAAGTTGG+CGG - Chr8:68928989-68929008 MsG0880046091.01.T01:intron 45.0%
!! GATGCTGACTTGAACCAAGA+TGG - Chr8:68929228-68929247 MsG0880046091.01.T01:intron 45.0%
!! TATGGTTGGTTGGTGAGCAA+AGG + Chr8:68926576-68926595 None:intergenic 45.0%
AATCACGGGATCCTCTTTCC+AGG + Chr8:68926636-68926655 None:intergenic 50.0%
GCAAGCATGTCAACTGCCTA+TGG - Chr8:68928268-68928287 MsG0880046091.01.T01:intron 50.0%
GGATTGTAGGCTGTTGCGAT+TGG - Chr8:68926714-68926733 MsG0880046091.01.T01:intron 50.0%
GTCCAGCACATACCTTAGGT+AGG + Chr8:68929325-68929344 None:intergenic 50.0%
TCCCTACCTAAGGTATGTGC+TGG - Chr8:68929320-68929339 MsG0880046091.01.T01:intron 50.0%
TGTCTTCTAGCGCTGCGTTT+GGG + Chr8:68928584-68928603 None:intergenic 50.0%
TTGTCTTCTAGCGCTGCGTT+TGG + Chr8:68928585-68928604 None:intergenic 50.0%
! GTTGGTGAGCAAAGGATGCA+CGG + Chr8:68926568-68926587 None:intergenic 50.0%
!! TGGCTTTATAGAGCGTCCAG+AGG - Chr8:68928741-68928760 MsG0880046091.01.T01:intron 50.0%
!! GCAACCTTTTCTGGGTGTCG+TGG + Chr8:68927529-68927548 None:intergenic 55.0%
CTTCTAGCGCTGCGTTTGGG+TGG + Chr8:68928581-68928600 None:intergenic 60.0%
GCACGGTACAGAACCAGTGC+AGG + Chr8:68926551-68926570 None:intergenic 60.0%
GGCACCACGACACCCAGAAA+AGG - Chr8:68927522-68927541 MsG0880046091.01.T01:intron 60.0%
!! TGGGTGTCGTGGTGCCACAA+TGG + Chr8:68927518-68927537 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 68926482 68929407 68926482 ID=MsG0880046091.01;Name=MsG0880046091.01
Chr8 mRNA 68926482 68929407 68926482 ID=MsG0880046091.01.T01;Parent=MsG0880046091.01;Name=MsG0880046091.01.T01;_AED=0.44;_eAED=0.57;_QI=0|0.5|0.4|1|0.75|0.6|5|0|172
Chr8 exon 68929333 68929407 68929333 ID=MsG0880046091.01.T01:exon:783;Parent=MsG0880046091.01.T01
Chr8 exon 68928001 68928114 68928001 ID=MsG0880046091.01.T01:exon:782;Parent=MsG0880046091.01.T01
Chr8 exon 68927683 68927742 68927683 ID=MsG0880046091.01.T01:exon:781;Parent=MsG0880046091.01.T01
Chr8 exon 68926849 68926929 68926849 ID=MsG0880046091.01.T01:exon:780;Parent=MsG0880046091.01.T01
Chr8 exon 68926482 68926670 68926482 ID=MsG0880046091.01.T01:exon:779;Parent=MsG0880046091.01.T01
Chr8 CDS 68929333 68929407 68929333 ID=MsG0880046091.01.T01:cds;Parent=MsG0880046091.01.T01
Chr8 CDS 68928001 68928114 68928001 ID=MsG0880046091.01.T01:cds;Parent=MsG0880046091.01.T01
Chr8 CDS 68927683 68927742 68927683 ID=MsG0880046091.01.T01:cds;Parent=MsG0880046091.01.T01
Chr8 CDS 68926849 68926929 68926849 ID=MsG0880046091.01.T01:cds;Parent=MsG0880046091.01.T01
Chr8 CDS 68926482 68926670 68926482 ID=MsG0880046091.01.T01:cds;Parent=MsG0880046091.01.T01
Gene Sequence

>MsG0880046091.01.T01

ATGGTGTTTCAATTTGGGTTTGGATTGGATGAATGGGATTCTCATGATATATTTAAATCAGGTAAACCTGCACTGTTTAAACCCGTGTATCAAATTTTGGTTTCAGTCACTGTCAGTGAAGTTGAAGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGGCTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAAGAAAAAAGAAAATATCTTTGCAAATCGGGTCAAGCAAATGTTAATTGCACTTCTTTTCGAGTCTGAAATGAAGTTGGCGGATGATGTGATAGAAACAATTCTAGACAAGACTTTCTTGGATGCTGACTTGAACCAAGATGGAAAAATAGACATTGTTGAGTGGCGAAAATTTGTTTCTGAAAATCCTTCATTGCTCAAAATCATGACACTTCCCTACCTAAGGTATGTGCTGGACTATTTTCATGGTATATACGAATCTACTTTTATCCATATTATGATTATGATGTTCAAACTATAG

Protein sequence

>MsG0880046091.01.T01

MVFQFGFGLDEWDSHDIFKSGKPALFKPVYQILVSVTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNKKKENIFANRVKQMLIALLFESEMKLADDVIETILDKTFLDADLNQDGKIDIVEWRKFVSENPSLLKIMTLPYLRYVLDYFHGIYESTFIHIMIMMFKL*