Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019247.01.T01 | XP_003605242.1 | 93.895 | 344 | 21 | 0 | 1 | 344 | 1 | 344 | 0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019247.01.T01 | G7JH36 | 93.895 | 344 | 21 | 0 | 1 | 344 | 1 | 344 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048948.01 | MsG0480019247.01 | 0.830694 | 2.542591e-55 | 2.699126e-52 |
| MsG0080048986.01 | MsG0480019247.01 | 0.806107 | 9.660415e-50 | 5.199306e-47 |
| MsG0080049023.01 | MsG0480019247.01 | 0.823303 | 1.489273e-53 | 1.277396e-50 |
| MsG0180000719.01 | MsG0480019247.01 | 0.806753 | 7.059198e-50 | 3.862522e-47 |
| MsG0180001925.01 | MsG0480019247.01 | 0.814318 | 1.637436e-51 | 1.095182e-48 |
| MsG0180004125.01 | MsG0480019247.01 | 0.800861 | 1.181570e-48 | 5.561228e-46 |
| MsG0180004559.01 | MsG0480019247.01 | -0.808615 | 2.839244e-50 | 1.630828e-47 |
| MsG0180004731.01 | MsG0480019247.01 | 0.810866 | 9.316158e-51 | 5.680335e-48 |
| MsG0180004737.01 | MsG0480019247.01 | 0.817895 | 2.600762e-52 | 1.917852e-49 |
| MsG0180004787.01 | MsG0480019247.01 | 0.806581 | 7.672267e-50 | 4.179489e-47 |
| MsG0180005369.01 | MsG0480019247.01 | 0.818191 | 2.229434e-52 | 1.657457e-49 |
| MsG0180005767.01 | MsG0480019247.01 | 0.837938 | 3.867870e-57 | 5.102396e-54 |
| MsG0180006063.01 | MsG0480019247.01 | 0.864613 | 1.071687e-64 | 3.386048e-61 |
| MsG0180006076.01 | MsG0480019247.01 | 0.860543 | 1.919881e-63 | 5.267080e-60 |
| MsG0180006182.01 | MsG0480019247.01 | -0.809734 | 1.634589e-50 | 9.673207e-48 |
| MsG0280011389.01 | MsG0480019247.01 | 0.807938 | 3.958279e-50 | 2.233546e-47 |
| MsG0380012148.01 | MsG0480019247.01 | 0.814440 | 1.538714e-51 | 1.032549e-48 |
| MsG0380013041.01 | MsG0480019247.01 | -0.806573 | 7.703637e-50 | 4.195761e-47 |
| MsG0380013063.01 | MsG0480019247.01 | 0.810248 | 1.266955e-50 | 7.598861e-48 |
| MsG0380014735.01 | MsG0480019247.01 | 0.833464 | 5.255357e-56 | 6.056604e-53 |
| MsG0480019247.01 | MsG0480023087.01 | 0.846130 | 2.635564e-59 | 4.490909e-56 |
| MsG0480019247.01 | MsG0480023242.01 | 0.835750 | 1.398722e-56 | 1.726552e-53 |
| MsG0480019247.01 | MsG0480023244.01 | 0.829977 | 3.805415e-55 | 3.956302e-52 |
| MsG0480019247.01 | MsG0480023324.01 | -0.802457 | 5.560542e-49 | 2.725135e-46 |
| MsG0480019247.01 | MsG0480023386.01 | 0.844057 | 9.571068e-59 | 1.527012e-55 |
| MsG0480019247.01 | MsG0580025153.01 | 0.853354 | 2.526173e-61 | 5.442991e-58 |
| MsG0480019247.01 | MsG0580025385.01 | -0.816188 | 6.288525e-52 | 4.425710e-49 |
| MsG0480019247.01 | MsG0580025464.01 | -0.820948 | 5.236336e-53 | 4.202745e-50 |
| MsG0480019247.01 | MsG0580026237.01 | 0.848894 | 4.581134e-60 | 8.532620e-57 |
| MsG0480019247.01 | MsG0580028330.01 | -0.825475 | 4.593258e-54 | 4.190929e-51 |
| MsG0480019247.01 | MsG0580029792.01 | 0.829817 | 4.162728e-55 | 4.308615e-52 |
| MsG0480019247.01 | MsG0580030179.01 | -0.843641 | 1.236689e-58 | 1.947521e-55 |
| MsG0480019247.01 | MsG0680030658.01 | 0.803314 | 3.697714e-49 | 1.852225e-46 |
| MsG0480019247.01 | MsG0680034415.01 | -0.800862 | 1.180953e-48 | 5.558461e-46 |
| MsG0480019247.01 | MsG0680035584.01 | 0.806503 | 7.968934e-50 | 4.332500e-47 |
| MsG0480019247.01 | MsG0680035870.01 | 0.804814 | 1.802786e-49 | 9.386526e-47 |
| MsG0480019247.01 | MsG0780037458.01 | 0.821680 | 3.550216e-53 | 2.907996e-50 |
| MsG0480019247.01 | MsG0780037982.01 | 0.822694 | 2.065804e-53 | 1.741735e-50 |
| MsG0480019247.01 | MsG0780038810.01 | -0.806617 | 7.540539e-50 | 4.111420e-47 |
| MsG0480019247.01 | MsG0780040167.01 | 0.821143 | 4.721715e-53 | 3.810109e-50 |
| MsG0480019247.01 | MsG0780040460.01 | -0.800969 | 1.123097e-48 | 5.300622e-46 |
| MsG0480019247.01 | MsG0780041531.01 | 0.840885 | 6.640951e-58 | 9.592094e-55 |
| MsG0480019247.01 | MsG0780041625.01 | 0.809024 | 2.321726e-50 | 1.348086e-47 |
| MsG0480019247.01 | MsG0780041691.01 | 0.804890 | 1.738422e-49 | 9.069510e-47 |
| MsG0480019247.01 | MsG0880044846.01 | 0.857152 | 1.982314e-62 | 4.846253e-59 |
| MsG0480019247.01 | MsG0880045394.01 | 0.829830 | 4.133429e-55 | 4.279808e-52 |
| MsG0480019247.01 | MsG0880046010.01 | 0.803686 | 3.096763e-49 | 1.566115e-46 |
| MsG0480019247.01 | MsG0880046630.01 | 0.813933 | 1.991723e-51 | 1.318189e-48 |
| MsG0380015828.01 | MsG0480019247.01 | 0.828546 | 8.467035e-55 | 8.442379e-52 |
| MsG0380016065.01 | MsG0480019247.01 | 0.846428 | 2.185487e-59 | 3.760879e-56 |
| MsG0380017812.01 | MsG0480019247.01 | 0.825879 | 3.684860e-54 | 3.401292e-51 |
| MsG0380017935.01 | MsG0480019247.01 | 0.815133 | 1.080566e-51 | 7.387426e-49 |
| MsG0280008820.01 | MsG0480019247.01 | 0.837456 | 5.143716e-57 | 6.685441e-54 |
| MsG0280009008.01 | MsG0480019247.01 | 0.805221 | 1.482057e-49 | 7.797084e-47 |
| MsG0280009864.01 | MsG0480019247.01 | 0.800738 | 1.252145e-48 | 5.874752e-46 |
| MsG0280010227.01 | MsG0480019247.01 | 0.809433 | 1.897007e-50 | 1.113643e-47 |
| MsG0280010240.01 | MsG0480019247.01 | -0.810386 | 1.182674e-50 | 7.118930e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019247.01.T01 | MTR_4g027070 | 93.895 | 344 | 21 | 0 | 1 | 344 | 1 | 344 | 0.0 | 642 |
| MsG0480019247.01.T01 | MTR_3g077500 | 29.048 | 210 | 118 | 7 | 122 | 306 | 157 | 360 | 4.62e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019247.01.T01 | AT3G60590 | 59.044 | 293 | 111 | 3 | 47 | 336 | 117 | 403 | 1.17e-123 | 361 |
| MsG0480019247.01.T01 | AT3G60590 | 59.044 | 293 | 111 | 3 | 47 | 336 | 42 | 328 | 1.17e-123 | 358 |
| MsG0480019247.01.T01 | AT3G60590 | 65.106 | 235 | 79 | 1 | 105 | 336 | 1 | 235 | 3.92e-112 | 326 |
| MsG0480019247.01.T01 | AT3G60590 | 65.106 | 235 | 79 | 1 | 105 | 336 | 1 | 235 | 3.92e-112 | 326 |
Find 100 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCTTAAGTTACCAGTTT+TGG | 0.169637 | 4:-16904026 | MsG0480019247.01.T01:CDS |
| GATATCTTGTGTTGGATTCT+TGG | 0.197748 | 4:+16904059 | None:intergenic |
| ATGAGGGTTGCTTGGTTTGC+TGG | 0.219003 | 4:-16903667 | MsG0480019247.01.T01:CDS |
| GGAAAGTAGGCTGGCTATAT+TGG | 0.219670 | 4:+16904155 | None:intergenic |
| TTCAGTGATCCTTGACTTCT+AGG | 0.219738 | 4:+16904540 | None:intergenic |
| AAGTGGCCGATGTGGCTTCT+TGG | 0.309885 | 4:-16904249 | MsG0480019247.01.T01:CDS |
| ATATCTTGTGTTGGATTCTT+GGG | 0.325931 | 4:+16904060 | None:intergenic |
| CCGGCATGGTGCCAACATTA+TGG | 0.332001 | 4:-16904206 | MsG0480019247.01.T01:CDS |
| GCCAGCCTACTTTCCTTGAT+TGG | 0.334640 | 4:-16904147 | MsG0480019247.01.T01:CDS |
| ACTTGGAAAATTGAGTCTTC+GGG | 0.336820 | 4:+16904497 | None:intergenic |
| CAATTAGAGGACTGGTTTGC+TGG | 0.343625 | 4:-16903717 | MsG0480019247.01.T01:CDS |
| TACTTGGAAAATTGAGTCTT+CGG | 0.347071 | 4:+16904496 | None:intergenic |
| AACATCGTTGCTACATTTAC+CGG | 0.348417 | 4:-16904003 | MsG0480019247.01.T01:CDS |
| GTCCCGTCATTGTTGATGTT+TGG | 0.348823 | 4:-16903973 | MsG0480019247.01.T01:CDS |
| TGCTGGTGGGTGCTGATTCT+CGG | 0.349468 | 4:-16903700 | MsG0480019247.01.T01:CDS |
| TGCAGCTCATGAGGGTTGCT+TGG | 0.354145 | 4:-16903675 | MsG0480019247.01.T01:CDS |
| GTTCCAAAACTGGTAACTTA+AGG | 0.363904 | 4:+16904023 | None:intergenic |
| AGCATATGAAGGATTGATTA+AGG | 0.367200 | 4:+16904469 | None:intergenic |
| TGAAGTATGTAATTTGTAAT+GGG | 0.367315 | 4:+16904581 | None:intergenic |
| CTTGATTGCATCTTCAACCT+TGG | 0.370625 | 4:-16904123 | MsG0480019247.01.T01:CDS |
| TTGAAGTATGTAATTTGTAA+TGG | 0.375675 | 4:+16904580 | None:intergenic |
| TCTGATACTTCTGCTACTAA+TGG | 0.376718 | 4:-16903607 | MsG0480019247.01.T01:CDS |
| CACTTGAAAAGCTGAAGCTC+TGG | 0.388796 | 4:+16904267 | None:intergenic |
| CGGAGTTGTTAACTTGGTAT+TGG | 0.392956 | 4:-16903855 | MsG0480019247.01.T01:CDS |
| TAGCAACGATGTTCCAAAAC+TGG | 0.399984 | 4:+16904013 | None:intergenic |
| AGTCAAGGATCACTGAAATC+TGG | 0.401890 | 4:-16904534 | MsG0480019247.01.T01:CDS |
| CGGTACGCCTCGTAAATGAT+AGG | 0.402362 | 4:+16903808 | None:intergenic |
| GAAAGTAGGCTGGCTATATT+GGG | 0.412056 | 4:+16904156 | None:intergenic |
| CATCGACTTTACTAGATTCA+AGG | 0.414478 | 4:+16904343 | None:intergenic |
| AGATGAAAGGTAGTTGAGGT+TGG | 0.422565 | 4:+16903932 | None:intergenic |
| GATTGATTAAGGCGAATACT+TGG | 0.427653 | 4:+16904480 | None:intergenic |
| TTCCAAAACTGGTAACTTAA+GGG | 0.443081 | 4:+16904024 | None:intergenic |
| TAAATTTGTGCAGCATATGA+AGG | 0.458595 | 4:+16904458 | None:intergenic |
| GAAAATTGAGTCTTCGGGGT+TGG | 0.463484 | 4:+16904502 | None:intergenic |
| AAAAGCTGAAGCTCTGGGCC+TGG | 0.466577 | 4:+16904273 | None:intergenic |
| TGAAGGGCTTGTGGAGGAAA+AGG | 0.474348 | 4:-16904301 | MsG0480019247.01.T01:CDS |
| CATGCCGGTCGCAAGGAGAA+TGG | 0.480965 | 4:+16904221 | None:intergenic |
| TTGCTCTTGATATCTTGTGT+TGG | 0.483777 | 4:+16904051 | None:intergenic |
| TGGATGATGCATACAATTAG+AGG | 0.490849 | 4:-16903730 | MsG0480019247.01.T01:CDS |
| TTCAAGGGTTTCAAATACAT+TGG | 0.490869 | 4:+16904359 | None:intergenic |
| CATTCTCCTTGCGACCGGCA+TGG | 0.493344 | 4:-16904220 | MsG0480019247.01.T01:CDS |
| TTCTCGGTCTGCAGCTCATG+AGG | 0.494873 | 4:-16903684 | MsG0480019247.01.T01:CDS |
| ATCTCATCTGCAGTTCTGCT+AGG | 0.499288 | 4:-16903913 | MsG0480019247.01.T01:CDS |
| CAAGTCCAATCAAGGAAAGT+AGG | 0.501184 | 4:+16904142 | None:intergenic |
| CCTTCCATTCTCCTTGCGAC+CGG | 0.502226 | 4:-16904225 | MsG0480019247.01.T01:CDS |
| TTGAGTCTTCGGGGTTGGAA+TGG | 0.508586 | 4:+16904507 | None:intergenic |
| GGTATTGGCAATCACCAGTC+TGG | 0.508946 | 4:-16903840 | MsG0480019247.01.T01:CDS |
| GCTGCACAAATTTAACTCCA+TGG | 0.511920 | 4:-16904449 | MsG0480019247.01.T01:CDS |
| TCAGTGATCCTTGACTTCTA+GGG | 0.513921 | 4:+16904541 | None:intergenic |
| GATGCAATCAAGTCCAATCA+AGG | 0.517923 | 4:+16904134 | None:intergenic |
| GTTGATGTTTGGATCTCAGA+AGG | 0.522348 | 4:-16903962 | MsG0480019247.01.T01:CDS |
| CGGAGCTCACTGCACCGGCA+TGG | 0.527220 | 4:-16903750 | MsG0480019247.01.T01:CDS |
| ACCGTGTGTTGCAACTAATG+AGG | 0.527968 | 4:-16903789 | MsG0480019247.01.T01:CDS |
| TTGGCACCATGCCGGTCGCA+AGG | 0.530343 | 4:+16904214 | None:intergenic |
| CCGTGTGTTGCAACTAATGA+GGG | 0.534541 | 4:-16903788 | MsG0480019247.01.T01:CDS |
| ACACCAGGTGATGGCTCCCA+TGG | 0.534846 | 4:+16904432 | None:intergenic |
| GGTACGCCTCGTAAATGATA+GGG | 0.536191 | 4:+16903809 | None:intergenic |
| ATCCAAACATCAACAATGAC+GGG | 0.538377 | 4:+16903971 | None:intergenic |
| TCCAATCAAGGAAAGTAGGC+TGG | 0.539421 | 4:+16904146 | None:intergenic |
| AAGGGTTTCAAATACATTGG+CGG | 0.539553 | 4:+16904362 | None:intergenic |
| AGCCCTTCAGCATTTACTGT+TGG | 0.540077 | 4:+16904315 | None:intergenic |
| GATGCATACAATTAGAGGAC+TGG | 0.542233 | 4:-16903725 | MsG0480019247.01.T01:CDS |
| ACTGACAAAAGAAGAAGATA+AGG | 0.543336 | 4:+16903889 | None:intergenic |
| ACTCCATGGGAGCCATCACC+TGG | 0.545607 | 4:-16904435 | MsG0480019247.01.T01:CDS |
| TTATCGCTCTGATTATCAGC+AGG | 0.548529 | 4:+16904399 | None:intergenic |
| ACTTGAAAAGCTGAAGCTCT+GGG | 0.549526 | 4:+16904268 | None:intergenic |
| AGTAAATGCTGAAGGGCTTG+TGG | 0.549895 | 4:-16904310 | MsG0480019247.01.T01:CDS |
| CAATGACGGGACGATAAATC+CGG | 0.550783 | 4:+16903984 | None:intergenic |
| TAGAGGACTGGTTTGCTGGT+GGG | 0.550861 | 4:-16903713 | MsG0480019247.01.T01:CDS |
| CCGGTCGCAAGGAGAATGGA+AGG | 0.557417 | 4:+16904225 | None:intergenic |
| CTGCACAAATTTAACTCCAT+GGG | 0.559456 | 4:-16904448 | MsG0480019247.01.T01:CDS |
| AGAGCATACCCTAGAAGTCA+AGG | 0.563424 | 4:-16904549 | MsG0480019247.01.T01:CDS |
| ATAGGGGTGACGAGCCAGAC+TGG | 0.564890 | 4:+16903826 | None:intergenic |
| GATATCGGTAACCATAATGT+TGG | 0.567065 | 4:+16904195 | None:intergenic |
| CTAATGAGGGGATTAAAGCT+TGG | 0.567495 | 4:-16903775 | MsG0480019247.01.T01:CDS |
| GCATATGAAACACCAGGTGA+TGG | 0.571838 | 4:+16904423 | None:intergenic |
| ATCGACTTTACTAGATTCAA+GGG | 0.574707 | 4:+16904344 | None:intergenic |
| TGGCGCGGAGCTCACTGCAC+CGG | 0.577629 | 4:-16903755 | MsG0480019247.01.T01:CDS |
| TCGCCAACAGTAAATGCTGA+AGG | 0.578506 | 4:-16904318 | MsG0480019247.01.T01:CDS |
| TTGATGTTTGGATCTCAGAA+GGG | 0.580027 | 4:-16903961 | MsG0480019247.01.T01:CDS |
| TCTCGGTCTGCAGCTCATGA+GGG | 0.582359 | 4:-16903683 | MsG0480019247.01.T01:CDS |
| GCAGAAGTATCAGAAGAAGA+AGG | 0.584149 | 4:+16903616 | None:intergenic |
| CTTGGAAAATTGAGTCTTCG+GGG | 0.591320 | 4:+16904498 | None:intergenic |
| GTGGAGGAAAAGGATCAGCC+AGG | 0.598347 | 4:-16904291 | MsG0480019247.01.T01:CDS |
| CCATAATGTTGGCACCATGC+CGG | 0.599975 | 4:+16904206 | None:intergenic |
| CCCTCATTAGTTGCAACACA+CGG | 0.601155 | 4:+16903788 | None:intergenic |
| ATTGTATGCATCATCCATGC+CGG | 0.614750 | 4:+16903736 | None:intergenic |
| CGCCAACAGTAAATGCTGAA+GGG | 0.618904 | 4:-16904317 | MsG0480019247.01.T01:CDS |
| GATCCAAACATCAACAATGA+CGG | 0.619937 | 4:+16903970 | None:intergenic |
| AGAACTGCAGATGAGATGAA+AGG | 0.621152 | 4:+16903919 | None:intergenic |
| GAAGGGCCAAGAAGCCACAT+CGG | 0.622719 | 4:+16904243 | None:intergenic |
| TTAGAGGACTGGTTTGCTGG+TGG | 0.634523 | 4:-16903714 | MsG0480019247.01.T01:CDS |
| CGGTCGCAAGGAGAATGGAA+GGG | 0.646522 | 4:+16904226 | None:intergenic |
| GCAGGAGCATATGAAACACC+AGG | 0.654789 | 4:+16904417 | None:intergenic |
| AAATGCTGAAGGGCTTGTGG+AGG | 0.657011 | 4:-16904307 | MsG0480019247.01.T01:CDS |
| GATGAGATGAAAGGTAGTTG+AGG | 0.657199 | 4:+16903928 | None:intergenic |
| CGTCACCCCTATCATTTACG+AGG | 0.675142 | 4:-16903815 | MsG0480019247.01.T01:CDS |
| GTACGCCTCGTAAATGATAG+GGG | 0.677852 | 4:+16903810 | None:intergenic |
| GAGGGGATTAAAGCTTGGCG+CGG | 0.677965 | 4:-16903770 | MsG0480019247.01.T01:CDS |
| CGTGTGTTGCAACTAATGAG+GGG | 0.703231 | 4:-16903787 | MsG0480019247.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAGTATGTAATTTGTAAT+GGG | + | Chr4:16903616-16903635 | None:intergenic | 20.0% |
| !!! | TTGAAGTATGTAATTTGTAA+TGG | + | Chr4:16903617-16903636 | None:intergenic | 20.0% |
| ! | CCAAGAAAAATTGAAGATAT+CGG | + | Chr4:16904017-16904036 | None:intergenic | 25.0% |
| ACTGACAAAAGAAGAAGATA+AGG | + | Chr4:16904308-16904327 | None:intergenic | 30.0% | |
| AGCATATGAAGGATTGATTA+AGG | + | Chr4:16903728-16903747 | None:intergenic | 30.0% | |
| ATATCTTGTGTTGGATTCTT+GGG | + | Chr4:16904137-16904156 | None:intergenic | 30.0% | |
| TAAATTTGTGCAGCATATGA+AGG | + | Chr4:16903739-16903758 | None:intergenic | 30.0% | |
| TACTTGGAAAATTGAGTCTT+CGG | + | Chr4:16903701-16903720 | None:intergenic | 30.0% | |
| TTCAAGGGTTTCAAATACAT+TGG | + | Chr4:16903838-16903857 | None:intergenic | 30.0% | |
| TTCCAAAACTGGTAACTTAA+GGG | + | Chr4:16904173-16904192 | None:intergenic | 30.0% | |
| ! | ATCGACTTTACTAGATTCAA+GGG | + | Chr4:16903853-16903872 | None:intergenic | 30.0% |
| ! | CCGATATCTTCAATTTTTCT+TGG | - | Chr4:16904014-16904033 | MsG0480019247.01.T01:CDS | 30.0% |
| ! | TTTGTCAGTACAGATTTTGA+CGG | - | Chr4:16904319-16904338 | MsG0480019247.01.T01:CDS | 30.0% |
| AACATCGTTGCTACATTTAC+CGG | - | Chr4:16904191-16904210 | MsG0480019247.01.T01:CDS | 35.0% | |
| AAGGGTTTCAAATACATTGG+CGG | + | Chr4:16903835-16903854 | None:intergenic | 35.0% | |
| ACTTGGAAAATTGAGTCTTC+GGG | + | Chr4:16903700-16903719 | None:intergenic | 35.0% | |
| ATCCAAACATCAACAATGAC+GGG | + | Chr4:16904226-16904245 | None:intergenic | 35.0% | |
| CTGCACAAATTTAACTCCAT+GGG | - | Chr4:16903746-16903765 | MsG0480019247.01.T01:CDS | 35.0% | |
| GATATCGGTAACCATAATGT+TGG | + | Chr4:16904002-16904021 | None:intergenic | 35.0% | |
| GATATCTTGTGTTGGATTCT+TGG | + | Chr4:16904138-16904157 | None:intergenic | 35.0% | |
| GATCCAAACATCAACAATGA+CGG | + | Chr4:16904227-16904246 | None:intergenic | 35.0% | |
| GATTGATTAAGGCGAATACT+TGG | + | Chr4:16903717-16903736 | None:intergenic | 35.0% | |
| GTTCCAAAACTGGTAACTTA+AGG | + | Chr4:16904174-16904193 | None:intergenic | 35.0% | |
| TCTGATACTTCTGCTACTAA+TGG | - | Chr4:16904587-16904606 | MsG0480019247.01.T01:CDS | 35.0% | |
| TGGATGATGCATACAATTAG+AGG | - | Chr4:16904464-16904483 | MsG0480019247.01.T01:CDS | 35.0% | |
| TTGATGTTTGGATCTCAGAA+GGG | - | Chr4:16904233-16904252 | MsG0480019247.01.T01:CDS | 35.0% | |
| TTGCTCTTGATATCTTGTGT+TGG | + | Chr4:16904146-16904165 | None:intergenic | 35.0% | |
| ! | TTTTGACGGAGTTGTTAACT+TGG | - | Chr4:16904333-16904352 | MsG0480019247.01.T01:CDS | 35.0% |
| !! | CATCGACTTTACTAGATTCA+AGG | + | Chr4:16903854-16903873 | None:intergenic | 35.0% |
| ACTTGAAAAGCTGAAGCTCT+GGG | + | Chr4:16903929-16903948 | None:intergenic | 40.0% | |
| AGAACTGCAGATGAGATGAA+AGG | + | Chr4:16904278-16904297 | None:intergenic | 40.0% | |
| AGATGAAAGGTAGTTGAGGT+TGG | + | Chr4:16904265-16904284 | None:intergenic | 40.0% | |
| AGTCAAGGATCACTGAAATC+TGG | - | Chr4:16903660-16903679 | MsG0480019247.01.T01:CDS | 40.0% | |
| ATTGTATGCATCATCCATGC+CGG | + | Chr4:16904461-16904480 | None:intergenic | 40.0% | |
| CAAGTCCAATCAAGGAAAGT+AGG | + | Chr4:16904055-16904074 | None:intergenic | 40.0% | |
| CTAATGAGGGGATTAAAGCT+TGG | - | Chr4:16904419-16904438 | MsG0480019247.01.T01:CDS | 40.0% | |
| CTTGATTGCATCTTCAACCT+TGG | - | Chr4:16904071-16904090 | MsG0480019247.01.T01:CDS | 40.0% | |
| CTTGGAAAATTGAGTCTTCG+GGG | + | Chr4:16903699-16903718 | None:intergenic | 40.0% | |
| GATGAGATGAAAGGTAGTTG+AGG | + | Chr4:16904269-16904288 | None:intergenic | 40.0% | |
| GATGCAATCAAGTCCAATCA+AGG | + | Chr4:16904063-16904082 | None:intergenic | 40.0% | |
| GATGCATACAATTAGAGGAC+TGG | - | Chr4:16904469-16904488 | MsG0480019247.01.T01:CDS | 40.0% | |
| GCTGCACAAATTTAACTCCA+TGG | - | Chr4:16903745-16903764 | MsG0480019247.01.T01:CDS | 40.0% | |
| GTTGATGTTTGGATCTCAGA+AGG | - | Chr4:16904232-16904251 | MsG0480019247.01.T01:CDS | 40.0% | |
| TAGCAACGATGTTCCAAAAC+TGG | + | Chr4:16904184-16904203 | None:intergenic | 40.0% | |
| TCAGTGATCCTTGACTTCTA+GGG | + | Chr4:16903656-16903675 | None:intergenic | 40.0% | |
| TTATCGCTCTGATTATCAGC+AGG | + | Chr4:16903798-16903817 | None:intergenic | 40.0% | |
| TTCAGTGATCCTTGACTTCT+AGG | + | Chr4:16903657-16903676 | None:intergenic | 40.0% | |
| ! | CGGAGTTGTTAACTTGGTAT+TGG | - | Chr4:16904339-16904358 | MsG0480019247.01.T01:CDS | 40.0% |
| ! | CTCCCTTAAGTTACCAGTTT+TGG | - | Chr4:16904168-16904187 | MsG0480019247.01.T01:CDS | 40.0% |
| ! | GAAAGTAGGCTGGCTATATT+GGG | + | Chr4:16904041-16904060 | None:intergenic | 40.0% |
| !! | GCAGAAGTATCAGAAGAAGA+AGG | + | Chr4:16904581-16904600 | None:intergenic | 40.0% |
| !!! | TGCAACGCTTTTTCTTCTCA+TGG | - | Chr4:16904094-16904113 | MsG0480019247.01.T01:CDS | 40.0% |
| ACCGTGTGTTGCAACTAATG+AGG | - | Chr4:16904405-16904424 | MsG0480019247.01.T01:CDS | 45.0% | |
| AGAGCATACCCTAGAAGTCA+AGG | - | Chr4:16903645-16903664 | MsG0480019247.01.T01:CDS | 45.0% | |
| AGCCCTTCAGCATTTACTGT+TGG | + | Chr4:16903882-16903901 | None:intergenic | 45.0% | |
| AGTAAATGCTGAAGGGCTTG+TGG | - | Chr4:16903884-16903903 | MsG0480019247.01.T01:CDS | 45.0% | |
| ATCTCATCTGCAGTTCTGCT+AGG | - | Chr4:16904281-16904300 | MsG0480019247.01.T01:CDS | 45.0% | |
| CACTTGAAAAGCTGAAGCTC+TGG | + | Chr4:16903930-16903949 | None:intergenic | 45.0% | |
| CCCTCATTAGTTGCAACACA+CGG | + | Chr4:16904409-16904428 | None:intergenic | 45.0% | |
| CCGTGTGTTGCAACTAATGA+GGG | - | Chr4:16904406-16904425 | MsG0480019247.01.T01:CDS | 45.0% | |
| CGCCAACAGTAAATGCTGAA+GGG | - | Chr4:16903877-16903896 | MsG0480019247.01.T01:CDS | 45.0% | |
| CGTGTGTTGCAACTAATGAG+GGG | - | Chr4:16904407-16904426 | MsG0480019247.01.T01:CDS | 45.0% | |
| GAAAATTGAGTCTTCGGGGT+TGG | + | Chr4:16903695-16903714 | None:intergenic | 45.0% | |
| GCATATGAAACACCAGGTGA+TGG | + | Chr4:16903774-16903793 | None:intergenic | 45.0% | |
| GGTACGCCTCGTAAATGATA+GGG | + | Chr4:16904388-16904407 | None:intergenic | 45.0% | |
| GTACGCCTCGTAAATGATAG+GGG | + | Chr4:16904387-16904406 | None:intergenic | 45.0% | |
| GTCCCGTCATTGTTGATGTT+TGG | - | Chr4:16904221-16904240 | MsG0480019247.01.T01:CDS | 45.0% | |
| TCCAATCAAGGAAAGTAGGC+TGG | + | Chr4:16904051-16904070 | None:intergenic | 45.0% | |
| TCGCCAACAGTAAATGCTGA+AGG | - | Chr4:16903876-16903895 | MsG0480019247.01.T01:CDS | 45.0% | |
| ! | CAATGACGGGACGATAAATC+CGG | + | Chr4:16904213-16904232 | None:intergenic | 45.0% |
| ! | GGAAAGTAGGCTGGCTATAT+TGG | + | Chr4:16904042-16904061 | None:intergenic | 45.0% |
| !! | CAATTAGAGGACTGGTTTGC+TGG | - | Chr4:16904477-16904496 | MsG0480019247.01.T01:CDS | 45.0% |
| !! | CAGAGCTTCAGCTTTTCAAG+TGG | - | Chr4:16903928-16903947 | MsG0480019247.01.T01:CDS | 45.0% |
| !! | GAAGAAAAAGCGTTGCACCA+AGG | + | Chr4:16904091-16904110 | None:intergenic | 45.0% |
| AAATGCTGAAGGGCTTGTGG+AGG | - | Chr4:16903887-16903906 | MsG0480019247.01.T01:CDS | 50.0% | |
| CCATAATGTTGGCACCATGC+CGG | + | Chr4:16903991-16904010 | None:intergenic | 50.0% | |
| CGGTACGCCTCGTAAATGAT+AGG | + | Chr4:16904389-16904408 | None:intergenic | 50.0% | |
| CGTCACCCCTATCATTTACG+AGG | - | Chr4:16904379-16904398 | MsG0480019247.01.T01:CDS | 50.0% | |
| GCCAGCCTACTTTCCTTGAT+TGG | - | Chr4:16904047-16904066 | MsG0480019247.01.T01:CDS | 50.0% | |
| TGAAGGGCTTGTGGAGGAAA+AGG | - | Chr4:16903893-16903912 | MsG0480019247.01.T01:CDS | 50.0% | |
| TTGAGTCTTCGGGGTTGGAA+TGG | + | Chr4:16903690-16903709 | None:intergenic | 50.0% | |
| ! | GCAGGAGCATATGAAACACC+AGG | + | Chr4:16903780-16903799 | None:intergenic | 50.0% |
| !! | ATGAGGGTTGCTTGGTTTGC+TGG | - | Chr4:16904527-16904546 | MsG0480019247.01.T01:CDS | 50.0% |
| !! | GGTATTGGCAATCACCAGTC+TGG | - | Chr4:16904354-16904373 | MsG0480019247.01.T01:CDS | 50.0% |
| !! | TAGAGGACTGGTTTGCTGGT+GGG | - | Chr4:16904481-16904500 | MsG0480019247.01.T01:CDS | 50.0% |
| !! | TTAGAGGACTGGTTTGCTGG+TGG | - | Chr4:16904480-16904499 | MsG0480019247.01.T01:CDS | 50.0% |
| !!! | AGCTTTTCAAGTGGCCGATG+TGG | - | Chr4:16903937-16903956 | MsG0480019247.01.T01:CDS | 50.0% |
| AAGTGGCCGATGTGGCTTCT+TGG | - | Chr4:16903945-16903964 | MsG0480019247.01.T01:CDS | 55.0% | |
| CCTTCCATTCTCCTTGCGAC+CGG | - | Chr4:16903969-16903988 | MsG0480019247.01.T01:CDS | 55.0% | |
| CGGTCGCAAGGAGAATGGAA+GGG | + | Chr4:16903971-16903990 | None:intergenic | 55.0% | |
| GAAGGGCCAAGAAGCCACAT+CGG | + | Chr4:16903954-16903973 | None:intergenic | 55.0% | |
| GAGGGGATTAAAGCTTGGCG+CGG | - | Chr4:16904424-16904443 | MsG0480019247.01.T01:CDS | 55.0% | |
| GTGGAGGAAAAGGATCAGCC+AGG | - | Chr4:16903903-16903922 | MsG0480019247.01.T01:CDS | 55.0% | |
| TCTCGGTCTGCAGCTCATGA+GGG | - | Chr4:16904511-16904530 | MsG0480019247.01.T01:CDS | 55.0% | |
| TGCAGCTCATGAGGGTTGCT+TGG | - | Chr4:16904519-16904538 | MsG0480019247.01.T01:CDS | 55.0% | |
| TTCTCGGTCTGCAGCTCATG+AGG | - | Chr4:16904510-16904529 | MsG0480019247.01.T01:CDS | 55.0% | |
| ! | CCGGCATGGTGCCAACATTA+TGG | - | Chr4:16903988-16904007 | MsG0480019247.01.T01:CDS | 55.0% |
| !! | AAAAGCTGAAGCTCTGGGCC+TGG | + | Chr4:16903924-16903943 | None:intergenic | 55.0% |
| !! | TGCTGGTGGGTGCTGATTCT+CGG | - | Chr4:16904494-16904513 | MsG0480019247.01.T01:CDS | 55.0% |
| ACTCCATGGGAGCCATCACC+TGG | - | Chr4:16903759-16903778 | MsG0480019247.01.T01:CDS | 60.0% | |
| ATAGGGGTGACGAGCCAGAC+TGG | + | Chr4:16904371-16904390 | None:intergenic | 60.0% | |
| CATGCCGGTCGCAAGGAGAA+TGG | + | Chr4:16903976-16903995 | None:intergenic | 60.0% | |
| CATTCTCCTTGCGACCGGCA+TGG | - | Chr4:16903974-16903993 | MsG0480019247.01.T01:CDS | 60.0% | |
| CCGGTCGCAAGGAGAATGGA+AGG | + | Chr4:16903972-16903991 | None:intergenic | 60.0% | |
| ! | ACACCAGGTGATGGCTCCCA+TGG | + | Chr4:16903765-16903784 | None:intergenic | 60.0% |
| TTGGCACCATGCCGGTCGCA+AGG | + | Chr4:16903983-16904002 | None:intergenic | 65.0% | |
| TGGCGCGGAGCTCACTGCAC+CGG | - | Chr4:16904439-16904458 | MsG0480019247.01.T01:CDS | 70.0% | |
| ! | CGGAGCTCACTGCACCGGCA+TGG | - | Chr4:16904444-16904463 | MsG0480019247.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 16903591 | 16904625 | 16903591 | ID=MsG0480019247.01;Name=MsG0480019247.01 |
| Chr4 | mRNA | 16903591 | 16904625 | 16903591 | ID=MsG0480019247.01.T01;Parent=MsG0480019247.01;Name=MsG0480019247.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|344 |
| Chr4 | exon | 16903591 | 16904625 | 16903591 | ID=MsG0480019247.01.T01:exon:5356;Parent=MsG0480019247.01.T01 |
| Chr4 | CDS | 16903591 | 16904625 | 16903591 | ID=MsG0480019247.01.T01:cds;Parent=MsG0480019247.01.T01 |
| Gene Sequence |
| Protein sequence |
