AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030658.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030658.01.T01 MTR_6g008890 96.676 361 6 2 1 360 1 356 0.0 709
MsG0680030658.01.T01 MTR_4g071610 96.676 361 6 2 1 360 1 356 0.0 709
MsG0680030658.01.T01 MTR_3g115240 23.100 329 202 7 31 358 41 319 7.27e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030658.01.T01 AT5G14970 53.351 373 143 9 1 360 1 355 1.09e-119 350
MsG0680030658.01.T01 AT2G14910 36.434 387 206 9 1 359 1 375 2.76e-55 186
MsG0680030658.01.T01 AT2G14910 34.341 364 199 8 1 336 1 352 5.66e-44 155
MsG0680030658.01.T01 AT1G63610 26.298 289 161 7 72 358 88 326 7.56e-17 80.9

Find 117 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATCATTTCCTGCTTC+TGG 0.140167 6:-6798845 None:intergenic
CGAAGCTAGCTCTAACTTTA+TGG 0.171310 6:+6799349 MsG0680030658.01.T01:CDS
GAGAAGGTTGTTTCTGATTT+GGG 0.261359 6:+6797463 MsG0680030658.01.T01:CDS
TGAGAAGGTTGTTTCTGATT+TGG 0.269725 6:+6797462 MsG0680030658.01.T01:CDS
TCGCTCTTTCGATCCTGATA+TGG 0.292029 6:+6798911 MsG0680030658.01.T01:CDS
TGAAACGCCTTTAGAGAGTT+TGG 0.314908 6:+6797408 MsG0680030658.01.T01:CDS
AGGAAGAAGAGAGAGGGGAG+AGG 0.316167 6:-6794984 None:intergenic
ATTGGCAGGTGTATGTTATT+AGG 0.317981 6:+6799857 MsG0680030658.01.T01:intron
TTGCATCATTTCCTGCTTCT+GGG 0.339715 6:-6798844 None:intergenic
CTTGTTTCTTCTATCATCAC+TGG 0.342003 6:+6795293 MsG0680030658.01.T01:CDS
GGGAGAGGGTGGTGGAGAGA+TGG 0.342989 6:-6794969 None:intergenic
TGATTTGGGGTTAGCGAATT+CGG 0.348201 6:+6797477 MsG0680030658.01.T01:CDS
AGTAATGGCGCAGGAGTCTT+TGG 0.369133 6:+6797514 MsG0680030658.01.T01:CDS
AGAGAGAGGGGAGAGGGTGG+TGG 0.369712 6:-6794977 None:intergenic
GGAGAGGGTGGTGGAGAGAT+GGG 0.382331 6:-6794968 None:intergenic
TTGTGAGGCATTACCATATC+AGG 0.383147 6:-6798924 None:intergenic
GATGTCCTTGACGAGGAATC+TGG 0.386448 6:+6797354 MsG0680030658.01.T01:CDS
CTTTGGAGATTTGCCGCCTC+AGG 0.387256 6:+6797531 MsG0680030658.01.T01:CDS
AGAGAAAGGGTCGACGGTGG+GGG 0.387263 6:-6795016 None:intergenic
GAGAAAGGGTCGACGGTGGG+GGG 0.394343 6:-6795015 None:intergenic
GGTGGAGAGATGGGTGAGAT+GGG 0.394624 6:-6794959 None:intergenic
GATTTCATCGTTACTCTTGT+TGG 0.398287 6:+6794862 MsG0680030658.01.T01:five_prime_UTR
AGAAAGGGTCGACGGTGGGG+GGG 0.400000 6:-6795014 None:intergenic
TGGAAAAGATAATTTGGTTA+CGG 0.409532 6:+6800210 MsG0680030658.01.T01:three_prime_UTR
GGAAGAAGAGAGAGGGGAGA+GGG 0.409734 6:-6794983 None:intergenic
TTATTAGGTCATCACTTAAG+AGG 0.413839 6:+6799872 MsG0680030658.01.T01:CDS
GTGTTCCTCTTCTTCTTCCA+TGG 0.415672 6:+6794884 MsG0680030658.01.T01:exon
ATCGTTGTTGTGTTATAAAG+AGG 0.415993 6:-6794842 None:intergenic
AGGAATTCGGAACAATTTGC+TGG 0.420898 6:+6798881 MsG0680030658.01.T01:CDS
ACGGCGGAGGAAGAAGAGAG+AGG 0.422744 6:-6794991 None:intergenic
AGATGGGTGAGATGGGTTGT+TGG 0.427729 6:-6794952 None:intergenic
CAAACTATTTCTACTATGCT+TGG 0.427819 6:+6795206 MsG0680030658.01.T01:CDS
AGAAGAGAGAGGGGAGAGGG+TGG 0.429852 6:-6794980 None:intergenic
AACTCATCACCATCATCGTC+CGG 0.439465 6:-6799404 None:intergenic
AGCACCAGTTCAATGTAAAA+CGG 0.440692 6:+6800054 MsG0680030658.01.T01:three_prime_UTR
TTTATGGAACAATCAGTAGA+AGG 0.441983 6:+6799365 MsG0680030658.01.T01:CDS
GTGAAGGGTGGTGAAGAACA+TGG 0.442986 6:+6797433 MsG0680030658.01.T01:CDS
GAAATATCACATGCGGATCA+AGG 0.445138 6:+6797376 MsG0680030658.01.T01:CDS
TAGAACACGACAGAGGAATT+CGG 0.452227 6:+6798868 MsG0680030658.01.T01:CDS
TGGTGGAGAGATGGGTGAGA+TGG 0.453731 6:-6794960 None:intergenic
TACCGTACAAGGCTTACAAC+TGG 0.455111 6:-6800027 None:intergenic
AAGAGAAAGGGTCGACGGTG+GGG 0.464517 6:-6795017 None:intergenic
GTCTCCGTCAACGTGGTGGC+AGG 0.465322 6:-6795048 None:intergenic
ACATCCTGCCACCACGTTGA+CGG 0.472105 6:+6795044 MsG0680030658.01.T01:CDS
AGAAACACCTTTAGAGATAA+CGG 0.473945 6:-6795159 None:intergenic
GCACCAGTTCAATGTAAAAC+GGG 0.475207 6:+6800055 MsG0680030658.01.T01:three_prime_UTR
TGAAGGGTGGTGAAGAACAT+GGG 0.476646 6:+6797434 MsG0680030658.01.T01:CDS
TTGCATTTGAGCTGTGTTGT+CGG 0.482310 6:+6799908 MsG0680030658.01.T01:CDS
CGGCGGAGGAAGAAGAGAGA+GGG 0.496174 6:-6794990 None:intergenic
AGGTCATCACTTAAGAGGAT+TGG 0.496502 6:+6799877 MsG0680030658.01.T01:CDS
TTTAGAGAGTTTGGAGGTGA+AGG 0.497310 6:+6797417 MsG0680030658.01.T01:CDS
CTTACAACTGGTGTTATACA+AGG 0.507375 6:-6800015 None:intergenic
GGAGTTGAATGCCCAGAAGC+AGG 0.516158 6:+6798833 MsG0680030658.01.T01:intron
TCGGCCGTCATCAGAGGAAG+TGG 0.517662 6:+6799274 MsG0680030658.01.T01:CDS
GAAGAGAAAGGGTCGACGGT+GGG 0.519887 6:-6795018 None:intergenic
GATAACTCCGTTATCTCTAA+AGG 0.520590 6:+6795152 MsG0680030658.01.T01:CDS
TTGAGATTCAACCTCTTCAT+CGG 0.522451 6:+6795267 MsG0680030658.01.T01:CDS
ATGTGATATGCTTTAATGCT+TGG 0.523281 6:-6800147 None:intergenic
GAGAGTTTGGAGGTGAAGGG+TGG 0.531426 6:+6797421 MsG0680030658.01.T01:CDS
GGTGATGCGTGAGAGGATGA+AGG 0.535643 6:-6794931 None:intergenic
ATAAGCTAAGGTAAAGGCTA+AGG 0.540160 6:+6794811 MsG0680030658.01.T01:five_prime_UTR
GAGAAGAAGTTCTAAAAGCA+AGG 0.541887 6:-6800103 None:intergenic
AAATATCACATGCGGATCAA+GGG 0.543711 6:+6797377 MsG0680030658.01.T01:CDS
GAAACTTACAGCAGCAGTAA+TGG 0.544279 6:+6797499 MsG0680030658.01.T01:CDS
CACTGTGGAATGCAGAGTAC+AGG 0.544330 6:+6797332 MsG0680030658.01.T01:CDS
TCAATGTAAAACGGGAAGTG+TGG 0.544687 6:+6800063 MsG0680030658.01.T01:three_prime_UTR
GCAGGATGTAGTGAAGAGAA+AGG 0.545166 6:-6795030 None:intergenic
TACAACTGGTGTTATACAAG+GGG 0.547285 6:-6800013 None:intergenic
GACTATCACCCGGACGATGA+TGG 0.547884 6:+6799395 MsG0680030658.01.T01:CDS
GGTTGTTGGTGATGCGTGAG+AGG 0.550045 6:-6794938 None:intergenic
TTCACCTCCAAACTCTCTAA+AGG 0.551338 6:-6797415 None:intergenic
AGAAGGTTGTTTCTGATTTG+GGG 0.556586 6:+6797464 MsG0680030658.01.T01:CDS
TTGTTTCTTCTATCATCACT+GGG 0.557906 6:+6795294 MsG0680030658.01.T01:CDS
TTTATAGAGAATAATAATGG+TGG 0.558374 6:+6799934 MsG0680030658.01.T01:exon
TCCTCCACTTCCTCTGATGA+CGG 0.560560 6:-6799278 None:intergenic
ACCAGAAAAGCAACTTTGCT+AGG 0.561251 6:-6799457 None:intergenic
CAATGTAAAACGGGAAGTGT+GGG 0.561554 6:+6800064 MsG0680030658.01.T01:three_prime_UTR
GAAACAAGTAACCGATGAAG+AGG 0.564989 6:-6795278 None:intergenic
TGCTGCCATGGAAGAAGAAG+AGG 0.566564 6:-6794889 None:intergenic
TTAGAGAGTTTGGAGGTGAA+GGG 0.568185 6:+6797418 MsG0680030658.01.T01:CDS
GTAACATCAAAATGATCAGA+AGG 0.580361 6:-6795236 None:intergenic
GGCGGAGGAAGAAGAGAGAG+GGG 0.581662 6:-6794989 None:intergenic
CACCAGTTGTAAGCCTTGTA+CGG 0.586127 6:+6800025 MsG0680030658.01.T01:three_prime_UTR
TACAGCAGCAGTAATGGCGC+AGG 0.586366 6:+6797505 MsG0680030658.01.T01:CDS
GATAGGTGACTGAAATGTCT+CGG 0.586884 6:+6799255 MsG0680030658.01.T01:intron
TGAAATTGTTGATGCTGCCA+TGG 0.587458 6:-6794901 None:intergenic
ACTCATCACCATCATCGTCC+GGG 0.590352 6:-6799403 None:intergenic
AACGCCTTTAGAGAGTTTGG+AGG 0.591671 6:+6797411 MsG0680030658.01.T01:CDS
CAGGATGTAGTGAAGAGAAA+GGG 0.604444 6:-6795029 None:intergenic
GTCTGAGTTGACAAACATGA+AGG 0.606464 6:+6797579 MsG0680030658.01.T01:CDS
TAGAGCTAGCTTCGTCGACA+AGG 0.606575 6:-6799340 None:intergenic
TGCTAGGTAATCGCGAGAAG+TGG 0.609297 6:-6799441 None:intergenic
AATGTCTCGGCCGTCATCAG+AGG 0.610274 6:+6799268 MsG0680030658.01.T01:CDS
TAGATATCACTGTGAAGCCA+CGG 0.611648 6:-6795103 None:intergenic
GTGATGCGTGAGAGGATGAA+GGG 0.624710 6:-6794930 None:intergenic
TGAAGAGAAAGGGTCGACGG+TGG 0.624741 6:-6795019 None:intergenic
AATATCACATGCGGATCAAG+GGG 0.625812 6:+6797378 MsG0680030658.01.T01:CDS
GAGATAACGGAGTTATCGAG+AGG 0.629687 6:-6795146 None:intergenic
TATTTCCAGATTCCTCGTCA+AGG 0.638754 6:-6797359 None:intergenic
ATCACATGCGGATCAAGGGG+CGG 0.640143 6:+6797381 MsG0680030658.01.T01:CDS
GAAGGGTGGTGAAGAACATG+GGG 0.641262 6:+6797435 MsG0680030658.01.T01:CDS
TAGTGAAGAGAAAGGGTCGA+CGG 0.646305 6:-6795022 None:intergenic
GCCGTCATCAGAGGAAGTGG+AGG 0.649197 6:+6799277 MsG0680030658.01.T01:CDS
AGAACATGGGGAAACTGAGA+AGG 0.656403 6:+6797447 MsG0680030658.01.T01:CDS
TTACAACTGGTGTTATACAA+GGG 0.668575 6:-6800014 None:intergenic
TGAATGTATTTCAGAGCCTG+AGG 0.668987 6:-6797547 None:intergenic
GAATCTGGAAATATCACATG+CGG 0.673688 6:+6797369 MsG0680030658.01.T01:CDS
ATGTATTTCAGAGCCTGAGG+CGG 0.676018 6:-6797544 None:intergenic
CGTAAATCAACGTTCAACCG+TGG 0.677897 6:+6795086 MsG0680030658.01.T01:CDS
TGAGTTGACAAACATGAAGG+AGG 0.679770 6:+6797582 MsG0680030658.01.T01:CDS
CAACGTCGTCTCCGTCAACG+TGG 0.687491 6:-6795055 None:intergenic
CGTCGTCTCCGTCAACGTGG+TGG 0.693744 6:-6795052 None:intergenic
AGGAAACATAGACTATCACC+CGG 0.708791 6:+6799385 MsG0680030658.01.T01:CDS
CAACTGGTGTTATACAAGGG+GGG 0.713234 6:-6800011 None:intergenic
ACAACTGGTGTTATACAAGG+GGG 0.713530 6:-6800012 None:intergenic
ATGCAATTAGAACACGACAG+AGG 0.723714 6:+6798861 MsG0680030658.01.T01:CDS
AGTACAGGATGTCCTTGACG+AGG 0.724418 6:+6797347 MsG0680030658.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAATTATAGAAAATTG+AGG - Chr6:6795340-6795359 None:intergenic 15.0%
!! ATAAACTTAAAATTCAATCA+AGG - Chr6:6797715-6797734 None:intergenic 15.0%
!! TCACAAATTTACAAAATAAA+CGG - Chr6:6798290-6798309 None:intergenic 15.0%
!! TTATGAATTTAGCATTATAT+TGG + Chr6:6796128-6796147 MsG0680030658.01.T01:intron 15.0%
!!! ACTTTTATAGAGAATAATAA+TGG + Chr6:6799931-6799950 MsG0680030658.01.T01:exon 15.0%
!!! GAAATTGATAAATTTTGAAT+TGG + Chr6:6797285-6797304 MsG0680030658.01.T01:intron 15.0%
!!! GAATTTTAAGTTTATGTATT+GGG + Chr6:6797720-6797739 MsG0680030658.01.T01:intron 15.0%
!!! TAATGAATTTTACATAATCA+GGG + Chr6:6796851-6796870 MsG0680030658.01.T01:intron 15.0%
!!! TCATTTTGTCAAATTATTAT+CGG + Chr6:6795525-6795544 MsG0680030658.01.T01:intron 15.0%
!!! TGAATTTTAAGTTTATGTAT+TGG + Chr6:6797719-6797738 MsG0680030658.01.T01:intron 15.0%
!!! TTAGAATTTTGTTAATTTCA+AGG + Chr6:6799731-6799750 MsG0680030658.01.T01:intron 15.0%
!!! TTCTTAATTATGATTTTGAT+AGG + Chr6:6796220-6796239 MsG0680030658.01.T01:intron 15.0%
!!! TTTGTTTGTTAAAGTATTAT+CGG + Chr6:6795726-6795745 MsG0680030658.01.T01:intron 15.0%
!! AAATTATAGAAAATTGAGGT+AGG - Chr6:6795336-6795355 None:intergenic 20.0%
!! AAATTGTTCCATGAAATTAT+AGG - Chr6:6799771-6799790 None:intergenic 20.0%
!! ACATGATTAAACACAATAAA+CGG - Chr6:6799830-6799849 None:intergenic 20.0%
!! ATTTAGTCTCTATATAATTC+CGG - Chr6:6799657-6799676 None:intergenic 20.0%
!! GATTATGTAAAATTCATTAC+CGG - Chr6:6796850-6796869 None:intergenic 20.0%
!! GTGACAACTTAATATAAATA+GGG - Chr6:6797078-6797097 None:intergenic 20.0%
!! GTTATTATTGTGAGAAAAAA+AGG + Chr6:6798117-6798136 MsG0680030658.01.T01:intron 20.0%
!! TTTATAGAGAATAATAATGG+TGG + Chr6:6799934-6799953 MsG0680030658.01.T01:exon 20.0%
!!! AATAATAACCTTCAAGTTAT+CGG - Chr6:6798106-6798125 None:intergenic 20.0%
!!! AATGAATTTTACATAATCAG+GGG + Chr6:6796852-6796871 MsG0680030658.01.T01:intron 20.0%
!!! AATTTTTTATTATTCCAAGG+AGG + Chr6:6797687-6797706 MsG0680030658.01.T01:intron 20.0%
!!! ACTCTATTTTTGTTACTAAT+TGG + Chr6:6797224-6797243 MsG0680030658.01.T01:intron 20.0%
!!! GAATAATTTGTTTGAAAGAA+TGG - Chr6:6798225-6798244 None:intergenic 20.0%
!!! GTAATGAATTTTACATAATC+AGG + Chr6:6796850-6796869 MsG0680030658.01.T01:intron 20.0%
!!! TGCAATTTTTTATTATTCCA+AGG + Chr6:6797684-6797703 MsG0680030658.01.T01:intron 20.0%
!!! TTATTCTTTGTTGTTTGTAT+TGG + Chr6:6798239-6798258 MsG0680030658.01.T01:intron 20.0%
!!! TTTTCTTGGAAAAGATAATT+TGG + Chr6:6800204-6800223 MsG0680030658.01.T01:three_prime_UTR 20.0%
! AAAAACATAAGCTAAGGTAA+AGG + Chr6:6794805-6794824 MsG0680030658.01.T01:five_prime_UTR 25.0%
! AAAAAGAGGAAGAATATACA+AGG - Chr6:6799963-6799982 None:intergenic 25.0%
! AAAAAGCAAAATCTGTTGTA+AGG - Chr6:6799505-6799524 None:intergenic 25.0%
! AAAAGCAAAATCTGTTGTAA+GGG - Chr6:6799504-6799523 None:intergenic 25.0%
! AAATTGAAAAATGGTCTAAC+CGG + Chr6:6799635-6799654 MsG0680030658.01.T01:intron 25.0%
! AAGATATTATCGCCAAATTA+AGG + Chr6:6796669-6796688 MsG0680030658.01.T01:intron 25.0%
! AATTTAGCACTCAAAACATT+AGG + Chr6:6796605-6796624 MsG0680030658.01.T01:intron 25.0%
! ACTATCTTCAAATTCTACTA+TGG - Chr6:6799101-6799120 None:intergenic 25.0%
! ATAAAAAGTTTCACAACCAT+AGG - Chr6:6797755-6797774 None:intergenic 25.0%
! ATTCATAGAATGGTGAAAAT+AGG - Chr6:6798721-6798740 None:intergenic 25.0%
! ATTGACATATAACTAGTAAG+AGG - Chr6:6798409-6798428 None:intergenic 25.0%
! ATTTAGCACTCAAAACATTA+GGG + Chr6:6796606-6796625 MsG0680030658.01.T01:intron 25.0%
! CAAAACAAAAACATAAGCTA+AGG + Chr6:6794799-6794818 MsG0680030658.01.T01:five_prime_UTR 25.0%
! CAACTTAATATAAATAGGGA+CGG - Chr6:6797074-6797093 None:intergenic 25.0%
! GATGAACAATAAATTTGAGA+GGG + Chr6:6795891-6795910 MsG0680030658.01.T01:intron 25.0%
! GATTCACTCAAAATCTATAA+AGG - Chr6:6795570-6795589 None:intergenic 25.0%
! GGTGACAACTTAATATAAAT+AGG - Chr6:6797079-6797098 None:intergenic 25.0%
! TAAACTCAAATTACTATCAG+TGG - Chr6:6797788-6797807 None:intergenic 25.0%
! TATAATCAATCATGTGTGTT+TGG + Chr6:6795398-6795417 MsG0680030658.01.T01:intron 25.0%
! TATATAGAGACTAAATGAAC+CGG + Chr6:6799661-6799680 MsG0680030658.01.T01:intron 25.0%
! TATGAATGCATCAAAAGAAA+TGG + Chr6:6798734-6798753 MsG0680030658.01.T01:intron 25.0%
! TATTTGATAAATCCCAAAGT+TGG + Chr6:6796792-6796811 MsG0680030658.01.T01:intron 25.0%
! TGATCCATGAAATTGAAAAA+TGG + Chr6:6799626-6799645 MsG0680030658.01.T01:intron 25.0%
! TGATGAACAATAAATTTGAG+AGG + Chr6:6795890-6795909 MsG0680030658.01.T01:intron 25.0%
! TGGAAAAGATAATTTGGTTA+CGG + Chr6:6800210-6800229 MsG0680030658.01.T01:three_prime_UTR 25.0%
! TTACTCATAGACTGTTTAAA+AGG + Chr6:6798762-6798781 MsG0680030658.01.T01:intron 25.0%
! TTGTAAATTTGTGAAAAGCA+AGG + Chr6:6798296-6798315 MsG0680030658.01.T01:intron 25.0%
! TTTAATCATGTTCTTTCCAT+TGG + Chr6:6799839-6799858 MsG0680030658.01.T01:intron 25.0%
!! ATAAGATCTGAAATTGTAGA+GGG + Chr6:6796877-6796896 MsG0680030658.01.T01:intron 25.0%
!! ATGGTTGTGAAACTTTTTAT+CGG + Chr6:6797755-6797774 MsG0680030658.01.T01:intron 25.0%
!! TATAAGATCTGAAATTGTAG+AGG + Chr6:6796876-6796895 MsG0680030658.01.T01:intron 25.0%
!! TTTTTCTTAACACATCACTA+CGG - Chr6:6795961-6795980 None:intergenic 25.0%
!!! AGCTTATGTTTTTGTTTTGT+TGG - Chr6:6794798-6794817 None:intergenic 25.0%
!!! AGTTTTAGAGGATTAATGTA+AGG + Chr6:6797192-6797211 MsG0680030658.01.T01:intron 25.0%
!!! GACAATGTTTATTTTCTTTC+AGG + Chr6:6798812-6798831 MsG0680030658.01.T01:intron 25.0%
!!! GACTTTTTTACTTTATGACA+TGG - Chr6:6797871-6797890 None:intergenic 25.0%
!!! GCTTATGTTTTTGTTTTGTT+GGG - Chr6:6794797-6794816 None:intergenic 25.0%
!!! GTTTTAGAGGATTAATGTAA+GGG + Chr6:6797193-6797212 MsG0680030658.01.T01:intron 25.0%
!!! TAGACCATTTTTCAATTTCA+TGG - Chr6:6799633-6799652 None:intergenic 25.0%
!!! TAGCTTATTTCTATTTGCAA+AGG + Chr6:6799190-6799209 MsG0680030658.01.T01:intron 25.0%
!!! TCAAAATGTTTTGAACAAGT+TGG - Chr6:6799313-6799332 None:intergenic 25.0%
!!! TCCTCTAAAACTTCAAAATA+TGG - Chr6:6797184-6797203 None:intergenic 25.0%
!!! TTTTGTTACTAATTGGTTTC+TGG + Chr6:6797231-6797250 MsG0680030658.01.T01:intron 25.0%
!!! TTTTTTTTTATGATCTGACG+AGG + Chr6:6796044-6796063 MsG0680030658.01.T01:intron 25.0%
AACTAGAGTTGTATGTGATT+AGG + Chr6:6796478-6796497 MsG0680030658.01.T01:intron 30.0%
AATTTGAGAGGGACAATAAT+TGG + Chr6:6795902-6795921 MsG0680030658.01.T01:intron 30.0%
ACATGCTATAAAAAAGAGCT+CGG - Chr6:6799803-6799822 None:intergenic 30.0%
AGAACTATGTTTGTTTCGAT+CGG + Chr6:6797822-6797841 MsG0680030658.01.T01:intron 30.0%
AGATACTTGGAGAATTTGAT+TGG + Chr6:6796274-6796293 MsG0680030658.01.T01:intron 30.0%
AGGTATCCAAAATATGAAGT+TGG + Chr6:6796701-6796720 MsG0680030658.01.T01:intron 30.0%
ATAATATCCTAAACACGCTT+AGG + Chr6:6798447-6798466 MsG0680030658.01.T01:intron 30.0%
ATCGTTGTTGTGTTATAAAG+AGG - Chr6:6794845-6794864 None:intergenic 30.0%
ATGTGATATGCTTTAATGCT+TGG - Chr6:6800150-6800169 None:intergenic 30.0%
GGATTGTGTAAAATTGAGTA+TGG + Chr6:6795811-6795830 MsG0680030658.01.T01:intron 30.0%
GTAACATCAAAATGATCAGA+AGG - Chr6:6795239-6795258 None:intergenic 30.0%
GTACAAAATCAGTATAGTGA+CGG + Chr6:6796084-6796103 MsG0680030658.01.T01:intron 30.0%
GTGATTAGAGTTCAAACATT+TGG + Chr6:6796329-6796348 MsG0680030658.01.T01:intron 30.0%
GTTTGAACTCTAATCACATA+GGG - Chr6:6796326-6796345 None:intergenic 30.0%
TAATATCCTAAACACGCTTA+GGG + Chr6:6798448-6798467 MsG0680030658.01.T01:intron 30.0%
TGTTTGAACTCTAATCACAT+AGG - Chr6:6796327-6796346 None:intergenic 30.0%
TTATATTGGTGTGATTCAAG+TGG + Chr6:6796142-6796161 MsG0680030658.01.T01:intron 30.0%
TTATTAGGTCATCACTTAAG+AGG + Chr6:6799872-6799891 MsG0680030658.01.T01:CDS 30.0%
TTCAACTTTGTTAATCACAC+TGG + Chr6:6799225-6799244 MsG0680030658.01.T01:intron 30.0%
TTGTACTAAAAAACGTATCG+TGG - Chr6:6799045-6799064 None:intergenic 30.0%
TTTATGGAACAATCAGTAGA+AGG + Chr6:6799365-6799384 MsG0680030658.01.T01:CDS 30.0%
TTTGAACTCTAATCACATAG+GGG - Chr6:6796325-6796344 None:intergenic 30.0%
TTTGATTGGTGTAATTCAAG+TGG + Chr6:6796288-6796307 MsG0680030658.01.T01:intron 30.0%
! AACCAAGTATTGTCAAATAG+CGG + Chr6:6798972-6798991 MsG0680030658.01.T01:intron 30.0%
! AGAAACACCTTTAGAGATAA+CGG - Chr6:6795162-6795181 None:intergenic 30.0%
! CAAAATATGAAGTTGGTTAC+CGG + Chr6:6796708-6796727 MsG0680030658.01.T01:intron 30.0%
! CTCTCAATTTAGAACCAAAT+TGG + Chr6:6796440-6796459 MsG0680030658.01.T01:intron 30.0%
! CTTTTGATGCATTCATAGAA+TGG - Chr6:6798731-6798750 None:intergenic 30.0%
! GGACATTAATCTTTTTGAAC+CGG - Chr6:6799683-6799702 None:intergenic 30.0%
! TAAACATGTGCACAAGTTTT+TGG + Chr6:6798552-6798571 MsG0680030658.01.T01:intron 30.0%
! TCTGAAATTGAAAATTCGCA+AGG - Chr6:6799704-6799723 None:intergenic 30.0%
! TTACGTTTAGCATTTGAGTT+TGG + Chr6:6796555-6796574 MsG0680030658.01.T01:intron 30.0%
! TTGTTAAAGTATTATCGGTG+TGG + Chr6:6795731-6795750 MsG0680030658.01.T01:intron 30.0%
! TTGTTTCTTCTATCATCACT+GGG + Chr6:6795294-6795313 MsG0680030658.01.T01:CDS 30.0%
!! ATAATTGGATGATGGATACT+TGG + Chr6:6795917-6795936 MsG0680030658.01.T01:intron 30.0%
!! CAAACTATTTCTACTATGCT+TGG + Chr6:6795206-6795225 MsG0680030658.01.T01:CDS 30.0%
!! TTACAACTGGTGTTATACAA+GGG - Chr6:6800017-6800036 None:intergenic 30.0%
!!! ATTAGTTTTGTAGTGAAGTG+TGG + Chr6:6796395-6796414 MsG0680030658.01.T01:intron 30.0%
!!! ATTTGGTTTTATTTGTGCTC+TGG + Chr6:6796519-6796538 MsG0680030658.01.T01:intron 30.0%
!!! GCCATATTTTGAAGTTTTAG+AGG + Chr6:6797180-6797199 MsG0680030658.01.T01:intron 30.0%
AAAATAGGATCAATTCTGGC+CGG - Chr6:6798706-6798725 None:intergenic 35.0%
AAATATCACATGCGGATCAA+GGG + Chr6:6797377-6797396 MsG0680030658.01.T01:CDS 35.0%
AGAATTATTGACAATCGCTG+TGG - Chr6:6797949-6797968 None:intergenic 35.0%
AGCACAATTAAAAACCTCCT+CGG - Chr6:6796355-6796374 None:intergenic 35.0%
AGCACCAGTTCAATGTAAAA+CGG + Chr6:6800054-6800073 MsG0680030658.01.T01:three_prime_UTR 35.0%
AGTACACCTATAAAAGCCTA+AGG + Chr6:6798488-6798507 MsG0680030658.01.T01:intron 35.0%
AGTTGAGTGTAGAAGATACT+TGG + Chr6:6796261-6796280 MsG0680030658.01.T01:intron 35.0%
ATAAGCTAAGGTAAAGGCTA+AGG + Chr6:6794811-6794830 MsG0680030658.01.T01:five_prime_UTR 35.0%
ATTGGCAGGTGTATGTTATT+AGG + Chr6:6799857-6799876 MsG0680030658.01.T01:intron 35.0%
CAGACACATTTCTATCAGAA+GGG - Chr6:6795467-6795486 None:intergenic 35.0%
CTGTCAATTATGTGTGTGTT+TGG + Chr6:6795607-6795626 MsG0680030658.01.T01:intron 35.0%
GAATCTGGAAATATCACATG+CGG + Chr6:6797369-6797388 MsG0680030658.01.T01:CDS 35.0%
GATAACTCCGTTATCTCTAA+AGG + Chr6:6795152-6795171 MsG0680030658.01.T01:CDS 35.0%
GATTTCATCGTTACTCTTGT+TGG + Chr6:6794862-6794881 MsG0680030658.01.T01:five_prime_UTR 35.0%
GCTTATGACAACAAGCTATA+TGG - Chr6:6798644-6798663 None:intergenic 35.0%
GGTGAAAATAGGATCAATTC+TGG - Chr6:6798710-6798729 None:intergenic 35.0%
GTAATCATTAGTGTCAGTGT+TGG - Chr6:6795494-6795513 None:intergenic 35.0%
TAATAACATACACCTGCCAA+TGG - Chr6:6799858-6799877 None:intergenic 35.0%
TATACAAGGGGGGTAAAAAT+GGG - Chr6:6800004-6800023 None:intergenic 35.0%
TGATTAGGATGTCGAACATT+TGG + Chr6:6796493-6796512 MsG0680030658.01.T01:intron 35.0%
TGTCGAACATTTGGAAGATT+TGG + Chr6:6796502-6796521 MsG0680030658.01.T01:intron 35.0%
TTAATCAACCATTTGTGCAC+CGG - Chr6:6796730-6796749 None:intergenic 35.0%
TTAGAGATTCGTAGATTGAG+TGG + Chr6:6795786-6795805 MsG0680030658.01.T01:intron 35.0%
TTAGAGGATTAATGTAAGGG+TGG + Chr6:6797196-6797215 MsG0680030658.01.T01:intron 35.0%
TTATACAAGGGGGGTAAAAA+TGG - Chr6:6800005-6800024 None:intergenic 35.0%
TTGAGATTCAACCTCTTCAT+CGG + Chr6:6795267-6795286 MsG0680030658.01.T01:CDS 35.0%
TTGCGATGCCTATAATTTCA+TGG + Chr6:6799760-6799779 MsG0680030658.01.T01:intron 35.0%
! AATCAAGTTGCAATTGAGAG+TGG + Chr6:6799155-6799174 MsG0680030658.01.T01:intron 35.0%
! CCAAATTAAGGTGCTCTTTA+AGG + Chr6:6796681-6796700 MsG0680030658.01.T01:intron 35.0%
! CGGTAACCAACTTCATATTT+TGG - Chr6:6796710-6796729 None:intergenic 35.0%
! CTTGTTTCTTCTATCATCAC+TGG + Chr6:6795293-6795312 MsG0680030658.01.T01:CDS 35.0%
! GCTTTGGATACATACTTGTA+AGG + Chr6:6796372-6796391 MsG0680030658.01.T01:intron 35.0%
! TCATCTGTCATGCATTTTCT+TGG + Chr6:6800190-6800209 MsG0680030658.01.T01:three_prime_UTR 35.0%
! TGTGCAAAGGTGATGTTTTT+GGG + Chr6:6797259-6797278 MsG0680030658.01.T01:intron 35.0%
! TGTTTTCGATTGTGGATGAT+AGG + Chr6:6797845-6797864 MsG0680030658.01.T01:intron 35.0%
! TTGTGCAAAGGTGATGTTTT+TGG + Chr6:6797258-6797277 MsG0680030658.01.T01:intron 35.0%
! TTTCGTCTCATTCTCTTTTC+CGG + Chr6:6798684-6798703 MsG0680030658.01.T01:intron 35.0%
!! AGAAGGTTGTTTCTGATTTG+GGG + Chr6:6797464-6797483 MsG0680030658.01.T01:CDS 35.0%
!! CCTTAAAGAGCACCTTAATT+TGG - Chr6:6796684-6796703 None:intergenic 35.0%
!! CTTACAACTGGTGTTATACA+AGG - Chr6:6800018-6800037 None:intergenic 35.0%
!! GAGAAGAAGTTCTAAAAGCA+AGG - Chr6:6800106-6800125 None:intergenic 35.0%
!! GAGAAGGTTGTTTCTGATTT+GGG + Chr6:6797463-6797482 MsG0680030658.01.T01:CDS 35.0%
!! GGAGGTTTTTAATTGTGCTT+TGG + Chr6:6796356-6796375 MsG0680030658.01.T01:intron 35.0%
!! GTCTCTGAAATTGTAAGAGT+CGG + Chr6:6799577-6799596 MsG0680030658.01.T01:intron 35.0%
!! TACAACTGGTGTTATACAAG+GGG - Chr6:6800016-6800035 None:intergenic 35.0%
!! TGAGAAGGTTGTTTCTGATT+TGG + Chr6:6797462-6797481 MsG0680030658.01.T01:CDS 35.0%
!! TTCTATCAGAAGTGTCCTTT+CGG - Chr6:6795643-6795662 None:intergenic 35.0%
!! TTTGCGCTTTTGAAAGATTG+AGG + Chr6:6797144-6797163 MsG0680030658.01.T01:intron 35.0%
!! TTTGGTTCTTAAGTACCGAA+AGG + Chr6:6795625-6795644 MsG0680030658.01.T01:intron 35.0%
!!! GTTTCTGGTTTTTTGTGCAA+AGG + Chr6:6797246-6797265 MsG0680030658.01.T01:intron 35.0%
AAGGAGCTTGAGTGCTATAT+GGG + Chr6:6796166-6796185 MsG0680030658.01.T01:intron 40.0%
AATATCACATGCGGATCAAG+GGG + Chr6:6797378-6797397 MsG0680030658.01.T01:CDS 40.0%
AATGGTTGATTAAGGAGGCT+AGG + Chr6:6796737-6796756 MsG0680030658.01.T01:intron 40.0%
ACACCTATAAAAGCCTAAGG+AGG + Chr6:6798491-6798510 MsG0680030658.01.T01:intron 40.0%
ACCAGAAAAGCAACTTTGCT+AGG - Chr6:6799460-6799479 None:intergenic 40.0%
ACCTATAAAAGCCTAAGGAG+GGG + Chr6:6798493-6798512 MsG0680030658.01.T01:intron 40.0%
AGATTCGTAGATTGAGTGGA+TGG + Chr6:6795790-6795809 MsG0680030658.01.T01:intron 40.0%
AGCATAGAGATGGAAAGAGA+TGG - Chr6:6798162-6798181 None:intergenic 40.0%
AGGAAACATAGACTATCACC+CGG + Chr6:6799385-6799404 MsG0680030658.01.T01:CDS 40.0%
AGGAATTCGGAACAATTTGC+TGG + Chr6:6798881-6798900 MsG0680030658.01.T01:CDS 40.0%
AGGTCATCACTTAAGAGGAT+TGG + Chr6:6799877-6799896 MsG0680030658.01.T01:CDS 40.0%
ATACAAGGGGGGTAAAAATG+GGG - Chr6:6800003-6800022 None:intergenic 40.0%
ATCACACTGGATGTCTTGAT+AGG + Chr6:6799238-6799257 MsG0680030658.01.T01:intron 40.0%
ATCATGTTCTTTCCATTGGC+AGG + Chr6:6799843-6799862 MsG0680030658.01.T01:intron 40.0%
ATGAACAGCCGATAACTTGA+AGG + Chr6:6798095-6798114 MsG0680030658.01.T01:intron 40.0%
ATGCAATTAGAACACGACAG+AGG + Chr6:6798861-6798880 MsG0680030658.01.T01:CDS 40.0%
ATTGCATCATTTCCTGCTTC+TGG - Chr6:6798848-6798867 None:intergenic 40.0%
CAAACCAGCGTAGTCAATAT+CGG - Chr6:6797992-6798011 None:intergenic 40.0%
CACATTTCTATCAGAAGGGT+CGG - Chr6:6795463-6795482 None:intergenic 40.0%
CACCTATAAAAGCCTAAGGA+GGG + Chr6:6798492-6798511 MsG0680030658.01.T01:intron 40.0%
CAGGATGTAGTGAAGAGAAA+GGG - Chr6:6795032-6795051 None:intergenic 40.0%
CCAGACACATTTCTATCAGA+AGG - Chr6:6795468-6795487 None:intergenic 40.0%
CCTTCTGATAGAAATGTGTC+TGG + Chr6:6795465-6795484 MsG0680030658.01.T01:intron 40.0%
CGAATCTCTAACACAAACAC+CGG - Chr6:6795777-6795796 None:intergenic 40.0%
CGCTTTATGGCGTCTTAAAA+CGG - Chr6:6797896-6797915 None:intergenic 40.0%
GAAACAAGTAACCGATGAAG+AGG - Chr6:6795281-6795300 None:intergenic 40.0%
GAAACTTACAGCAGCAGTAA+TGG + Chr6:6797499-6797518 MsG0680030658.01.T01:CDS 40.0%
GAAAGGACACTTCTGATAGA+AGG + Chr6:6795642-6795661 MsG0680030658.01.T01:intron 40.0%
GAAATATCACATGCGGATCA+AGG + Chr6:6797376-6797395 MsG0680030658.01.T01:CDS 40.0%
GAACCAAATTGGTGTAGTTC+AGG + Chr6:6796451-6796470 MsG0680030658.01.T01:intron 40.0%
GAGGGACAATAATTGGATGA+TGG + Chr6:6795909-6795928 MsG0680030658.01.T01:intron 40.0%
GATAGGTGACTGAAATGTCT+CGG + Chr6:6799255-6799274 MsG0680030658.01.T01:intron 40.0%
GCACAAATGGTTGATTAAGG+AGG + Chr6:6796732-6796751 MsG0680030658.01.T01:intron 40.0%
GCACCAGTTCAATGTAAAAC+GGG + Chr6:6800055-6800074 MsG0680030658.01.T01:three_prime_UTR 40.0%
GGTGCACAAATGGTTGATTA+AGG + Chr6:6796729-6796748 MsG0680030658.01.T01:intron 40.0%
TAAGGAGCTTGAGTGCTATA+TGG + Chr6:6796165-6796184 MsG0680030658.01.T01:intron 40.0%
TAGAACACGACAGAGGAATT+CGG + Chr6:6798868-6798887 MsG0680030658.01.T01:CDS 40.0%
TAGATATCACTGTGAAGCCA+CGG - Chr6:6795106-6795125 None:intergenic 40.0%
TATTGGGTGAATTGCTCCTA+TGG + Chr6:6797736-6797755 MsG0680030658.01.T01:intron 40.0%
TATTTCCAGATTCCTCGTCA+AGG - Chr6:6797362-6797381 None:intergenic 40.0%
TCAATATCGGCCATAACAGA+TGG - Chr6:6797979-6797998 None:intergenic 40.0%
TCAATGTAAAACGGGAAGTG+TGG + Chr6:6800063-6800082 MsG0680030658.01.T01:three_prime_UTR 40.0%
TGAAATTGTTGATGCTGCCA+TGG - Chr6:6794904-6794923 None:intergenic 40.0%
TGAATGTATTTCAGAGCCTG+AGG - Chr6:6797550-6797569 None:intergenic 40.0%
TTAGAGAGTTTGGAGGTGAA+GGG + Chr6:6797418-6797437 MsG0680030658.01.T01:CDS 40.0%
TTCACCTCCAAACTCTCTAA+AGG - Chr6:6797418-6797437 None:intergenic 40.0%
TTGAAGGAGTTAGGTGGAAA+AGG + Chr6:6798014-6798033 MsG0680030658.01.T01:intron 40.0%
TTGCATCATTTCCTGCTTCT+GGG - Chr6:6798847-6798866 None:intergenic 40.0%
TTGCATTTGAGCTGTGTTGT+CGG + Chr6:6799908-6799927 MsG0680030658.01.T01:CDS 40.0%
TTGGTGTGATTCAAGTGGTA+AGG + Chr6:6796147-6796166 MsG0680030658.01.T01:intron 40.0%
TTTAGAGAGTTTGGAGGTGA+AGG + Chr6:6797417-6797436 MsG0680030658.01.T01:CDS 40.0%
! AACAGAAGTTGTGACTTGTG+AGG - Chr6:6798942-6798961 None:intergenic 40.0%
! AGTTCGCGTTTTTGTTGCTA+TGG + Chr6:6797631-6797650 MsG0680030658.01.T01:intron 40.0%
! CAATGTAAAACGGGAAGTGT+GGG + Chr6:6800064-6800083 MsG0680030658.01.T01:three_prime_UTR 40.0%
! CGTTTAGCATTTGAGTTTGG+AGG + Chr6:6796558-6796577 MsG0680030658.01.T01:intron 40.0%
! CTTCCCGTTTTACATTGAAC+TGG - Chr6:6800061-6800080 None:intergenic 40.0%
! GTCTGAGTTGACAAACATGA+AGG + Chr6:6797579-6797598 MsG0680030658.01.T01:CDS 40.0%
! TGAAACGCCTTTAGAGAGTT+TGG + Chr6:6797408-6797427 MsG0680030658.01.T01:CDS 40.0%
! TGAGTTGACAAACATGAAGG+AGG + Chr6:6797582-6797601 MsG0680030658.01.T01:CDS 40.0%
! TGATTTGGGGTTAGCGAATT+CGG + Chr6:6797477-6797496 MsG0680030658.01.T01:CDS 40.0%
! TTGTGAGGCATTACCATATC+AGG - Chr6:6798927-6798946 None:intergenic 40.0%
! TTTTCGTTAGGTACACACTG+TGG + Chr6:6797317-6797336 MsG0680030658.01.T01:intron 40.0%
!! ACAACTGGTGTTATACAAGG+GGG - Chr6:6800015-6800034 None:intergenic 40.0%
!! AGTTTTGTAGTGAAGTGTGG+AGG + Chr6:6796398-6796417 MsG0680030658.01.T01:intron 40.0%
!! CGAAGCTAGCTCTAACTTTA+TGG + Chr6:6799349-6799368 MsG0680030658.01.T01:CDS 40.0%
!! GATATTGACTACGCTGGTTT+GGG + Chr6:6797991-6798010 MsG0680030658.01.T01:intron 40.0%
!! TGAGGTGTTGAGAGAAAAAG+AGG - Chr6:6799977-6799996 None:intergenic 40.0%
!!! ACCAGTACAGCATTTTTTGG+CGG + Chr6:6797032-6797051 MsG0680030658.01.T01:intron 40.0%
!!! ACCTAGCAAAGTTGCTTTTC+TGG + Chr6:6799456-6799475 MsG0680030658.01.T01:CDS 40.0%
!!! GTGCTATTTTTCTCGATACG+CGG + Chr6:6799119-6799138 MsG0680030658.01.T01:intron 40.0%
!!! TGCACCAGTACAGCATTTTT+TGG + Chr6:6797029-6797048 MsG0680030658.01.T01:intron 40.0%
!!! TGGTGCTTTTTTACCGTACA+AGG - Chr6:6800041-6800060 None:intergenic 40.0%
!!! TGGTTGTTGCTGTTTTCGTT+AGG + Chr6:6797305-6797324 MsG0680030658.01.T01:intron 40.0%
AACTCATCACCATCATCGTC+CGG - Chr6:6799407-6799426 None:intergenic 45.0%
ACCGCCAAAAAATGCTGTAC+TGG - Chr6:6797036-6797055 None:intergenic 45.0%
AGAACATGGGGAAACTGAGA+AGG + Chr6:6797447-6797466 MsG0680030658.01.T01:CDS 45.0%
AGAGTTCAAACATTTGGCCG+AGG + Chr6:6796335-6796354 MsG0680030658.01.T01:intron 45.0%
AGCTTGAGTGCTATATGGGT+AGG + Chr6:6796170-6796189 MsG0680030658.01.T01:intron 45.0%
AGTGAAGTGTGGAGGATACT+TGG + Chr6:6796406-6796425 MsG0680030658.01.T01:intron 45.0%
ATGTATTTCAGAGCCTGAGG+CGG - Chr6:6797547-6797566 None:intergenic 45.0%
CAACTACCCTAAGCGTGTTT+AGG - Chr6:6798457-6798476 None:intergenic 45.0%
CCAAATTGGTGTAGTTCAGG+TGG + Chr6:6796454-6796473 MsG0680030658.01.T01:intron 45.0%
CCACCTGAACTACACCAATT+TGG - Chr6:6796457-6796476 None:intergenic 45.0%
CGCCGCTATTTGACAATACT+TGG - Chr6:6798977-6798996 None:intergenic 45.0%
CGTAAATCAACGTTCAACCG+TGG + Chr6:6795086-6795105 MsG0680030658.01.T01:CDS 45.0%
CGTGTTAGTAGAGTTGTGTC+CGG + Chr6:6795755-6795774 MsG0680030658.01.T01:intron 45.0%
CTGAAATTGTAGAGGGATGC+AGG + Chr6:6796884-6796903 MsG0680030658.01.T01:intron 45.0%
GCAGGATGTAGTGAAGAGAA+AGG - Chr6:6795033-6795052 None:intergenic 45.0%
GGGGTAAAAATGGGGATTTG+AGG - Chr6:6799995-6800014 None:intergenic 45.0%
GTGTTCCTCTTCTTCTTCCA+TGG + Chr6:6794884-6794903 MsG0680030658.01.T01:exon 45.0%
TACCGTACAAGGCTTACAAC+TGG - Chr6:6800030-6800049 None:intergenic 45.0%
TACTTGGCCAGCAAAACTTC+AGG + Chr6:6795933-6795952 MsG0680030658.01.T01:intron 45.0%
TAGTGAAGAGAAAGGGTCGA+CGG - Chr6:6795025-6795044 None:intergenic 45.0%
TCGCTCTTTCGATCCTGATA+TGG + Chr6:6798911-6798930 MsG0680030658.01.T01:CDS 45.0%
TCTTCCACTGCCATCTGTTA+TGG + Chr6:6797966-6797985 MsG0680030658.01.T01:intron 45.0%
TGAAGGGTGGTGAAGAACAT+GGG + Chr6:6797434-6797453 MsG0680030658.01.T01:CDS 45.0%
TGATTAAGGAGGCTAGGCTA+CGG + Chr6:6796743-6796762 MsG0680030658.01.T01:intron 45.0%
TTAGGGTAGTTGTGCATGTG+TGG + Chr6:6798465-6798484 MsG0680030658.01.T01:intron 45.0%
! AACGCCTTTAGAGAGTTTGG+AGG + Chr6:6797411-6797430 MsG0680030658.01.T01:CDS 45.0%
! AATAGTGCGGTAATGGTGTG+GGG + Chr6:6796912-6796931 MsG0680030658.01.T01:intron 45.0%
! ATTCAATCAAGGCACCTCCT+TGG - Chr6:6797704-6797723 None:intergenic 45.0%
! CAATAGTGCGGTAATGGTGT+GGG + Chr6:6796911-6796930 MsG0680030658.01.T01:intron 45.0%
! CACCAGTTGTAAGCCTTGTA+CGG + Chr6:6800025-6800044 MsG0680030658.01.T01:three_prime_UTR 45.0%
! CGATATTGACTACGCTGGTT+TGG + Chr6:6797990-6798009 MsG0680030658.01.T01:intron 45.0%
! TACGGTACCTGAAGTTTTGC+TGG - Chr6:6795943-6795962 None:intergenic 45.0%
!! CAACTGGTGTTATACAAGGG+GGG - Chr6:6800014-6800033 None:intergenic 45.0%
!! GAGATAACGGAGTTATCGAG+AGG - Chr6:6795149-6795168 None:intergenic 45.0%
!! TCGATCGGTGTTTTCGATTG+TGG + Chr6:6797837-6797856 MsG0680030658.01.T01:intron 45.0%
!! TGGTTTGGGTTGAAGGAGTT+AGG + Chr6:6798005-6798024 MsG0680030658.01.T01:intron 45.0%
!! TTTGGGTTGAAGGAGTTAGG+TGG + Chr6:6798008-6798027 MsG0680030658.01.T01:intron 45.0%
ACTCATCACCATCATCGTCC+GGG - Chr6:6799406-6799425 None:intergenic 50.0%
AGTAATGGCGCAGGAGTCTT+TGG + Chr6:6797514-6797533 MsG0680030658.01.T01:CDS 50.0%
AGTACAGGATGTCCTTGACG+AGG + Chr6:6797347-6797366 MsG0680030658.01.T01:CDS 50.0%
ATTCATTACCGGCCAAGCCT+CGG - Chr6:6796839-6796858 None:intergenic 50.0%
CACTGTGGAATGCAGAGTAC+AGG + Chr6:6797332-6797351 MsG0680030658.01.T01:CDS 50.0%
GAAGGGTGGTGAAGAACATG+GGG + Chr6:6797435-6797454 MsG0680030658.01.T01:CDS 50.0%
GATGTCCTTGACGAGGAATC+TGG + Chr6:6797354-6797373 MsG0680030658.01.T01:CDS 50.0%
GCCTACTTGTGAAGGATGGT+GGG - Chr6:6797927-6797946 None:intergenic 50.0%
GGGTAGGAGTTTGAGCACTT+GGG + Chr6:6796186-6796205 MsG0680030658.01.T01:intron 50.0%
GGGTTGTACGAGACATCCTA+CGG + Chr6:6796950-6796969 MsG0680030658.01.T01:intron 50.0%
GTGAAGGGTGGTGAAGAACA+TGG + Chr6:6797433-6797452 MsG0680030658.01.T01:CDS 50.0%
GTGATGCGTGAGAGGATGAA+GGG - Chr6:6794933-6794952 None:intergenic 50.0%
GTGGGGTGGAAAGAGATAGA+GGG + Chr6:6796929-6796948 MsG0680030658.01.T01:intron 50.0%
GTTCAAACATTTGGCCGAGG+AGG + Chr6:6796338-6796357 MsG0680030658.01.T01:intron 50.0%
GTTGCAGCACTATGGCTTAG+TGG + Chr6:6798996-6799015 MsG0680030658.01.T01:intron 50.0%
GTTGGTTACCGGTGCACAAA+TGG + Chr6:6796719-6796738 MsG0680030658.01.T01:intron 50.0%
TCCTCCACTTCCTCTGATGA+CGG - Chr6:6799281-6799300 None:intergenic 50.0%
TGACACCAAGCGCATGCATT+TGG - Chr6:6797100-6797119 None:intergenic 50.0%
TGCTAGGTAATCGCGAGAAG+TGG - Chr6:6799444-6799463 None:intergenic 50.0%
TGCTGCCATGGAAGAAGAAG+AGG - Chr6:6794892-6794911 None:intergenic 50.0%
TGGGGTGGAAAGAGATAGAG+GGG + Chr6:6796930-6796949 MsG0680030658.01.T01:intron 50.0%
TGGGTAGGAGTTTGAGCACT+TGG + Chr6:6796185-6796204 MsG0680030658.01.T01:intron 50.0%
TGTCACCAAATGCATGCGCT+TGG + Chr6:6797092-6797111 MsG0680030658.01.T01:intron 50.0%
TGTGGCCTACTTGTGAAGGA+TGG - Chr6:6797931-6797950 None:intergenic 50.0%
TGTGGGGTGGAAAGAGATAG+AGG + Chr6:6796928-6796947 MsG0680030658.01.T01:intron 50.0%
! ACACTCAGGGTGTCCAACTT+TGG - Chr6:6796808-6796827 None:intergenic 50.0%
! ATGGCCGATATTGACTACGC+TGG + Chr6:6797985-6798004 MsG0680030658.01.T01:intron 50.0%
! CACTCAGGGTGTCCAACTTT+GGG - Chr6:6796807-6796826 None:intergenic 50.0%
! CACTGCGAAGAGCATAGAGA+TGG - Chr6:6798172-6798191 None:intergenic 50.0%
! GCAATAGTGCGGTAATGGTG+TGG + Chr6:6796910-6796929 MsG0680030658.01.T01:intron 50.0%
! GCCCCTCCTTAGGCTTTTAT+AGG - Chr6:6798497-6798516 None:intergenic 50.0%
! TAAGACGCCATAAAGCGCCA+TGG + Chr6:6797899-6797918 MsG0680030658.01.T01:intron 50.0%
! TAGAGCTAGCTTCGTCGACA+AGG - Chr6:6799343-6799362 None:intergenic 50.0%
!! ACTACGCTGGTTTGGGTTGA+AGG + Chr6:6797998-6798017 MsG0680030658.01.T01:intron 50.0%
!! AGATGGGTGAGATGGGTTGT+TGG - Chr6:6794955-6794974 None:intergenic 50.0%
AAGAGAAAGGGTCGACGGTG+GGG - Chr6:6795020-6795039 None:intergenic 55.0%
AATGTCTCGGCCGTCATCAG+AGG + Chr6:6799268-6799287 MsG0680030658.01.T01:CDS 55.0%
ACATCCTGCCACCACGTTGA+CGG + Chr6:6795044-6795063 MsG0680030658.01.T01:CDS 55.0%
AGGAAGAAGAGAGAGGGGAG+AGG - Chr6:6794987-6795006 None:intergenic 55.0%
ATAGCGGCGTTGCAGCACTA+TGG + Chr6:6798988-6799007 MsG0680030658.01.T01:intron 55.0%
ATCACATGCGGATCAAGGGG+CGG + Chr6:6797381-6797400 MsG0680030658.01.T01:CDS 55.0%
CTACGGCGAAGATGGTGCAA+CGG + Chr6:6796967-6796986 MsG0680030658.01.T01:intron 55.0%
CTCGGCCAACATCACACTCA+GGG - Chr6:6796821-6796840 None:intergenic 55.0%
GAAGAGAAAGGGTCGACGGT+GGG - Chr6:6795021-6795040 None:intergenic 55.0%
GACTATCACCCGGACGATGA+TGG + Chr6:6799395-6799414 MsG0680030658.01.T01:CDS 55.0%
GAGACATCCTACGGCGAAGA+TGG + Chr6:6796959-6796978 MsG0680030658.01.T01:intron 55.0%
GAGAGTTTGGAGGTGAAGGG+TGG + Chr6:6797421-6797440 MsG0680030658.01.T01:CDS 55.0%
GCCCACCATCCTTCACAAGT+AGG + Chr6:6797923-6797942 MsG0680030658.01.T01:intron 55.0%
GGAAGAAGAGAGAGGGGAGA+GGG - Chr6:6794986-6795005 None:intergenic 55.0%
GGACACCCTGAGTGTGATGT+TGG + Chr6:6796813-6796832 MsG0680030658.01.T01:intron 55.0%
GGAGCGCAATAGTGCGGTAA+TGG + Chr6:6796905-6796924 MsG0680030658.01.T01:intron 55.0%
GGAGTTGAATGCCCAGAAGC+AGG + Chr6:6798833-6798852 MsG0680030658.01.T01:intron 55.0%
GGAGTTTGAGCACTTGGGAG+AGG + Chr6:6796191-6796210 MsG0680030658.01.T01:intron 55.0%
GGCCTACTTGTGAAGGATGG+TGG - Chr6:6797928-6797947 None:intergenic 55.0%
GGCTCAGACACGCACAAACA+CGG - Chr6:6798388-6798407 None:intergenic 55.0%
GGTGATGCGTGAGAGGATGA+AGG - Chr6:6794934-6794953 None:intergenic 55.0%
GGTGGAGAGATGGGTGAGAT+GGG - Chr6:6794962-6794981 None:intergenic 55.0%
GTTTGAGCACTTGGGAGAGG+CGG + Chr6:6796194-6796213 MsG0680030658.01.T01:intron 55.0%
TACAGCAGCAGTAATGGCGC+AGG + Chr6:6797505-6797524 MsG0680030658.01.T01:CDS 55.0%
TCGCTGTGGCCTACTTGTGA+AGG - Chr6:6797935-6797954 None:intergenic 55.0%
TCGGCCATAACAGATGGCAG+TGG - Chr6:6797973-6797992 None:intergenic 55.0%
TGAAGAGAAAGGGTCGACGG+TGG - Chr6:6795022-6795041 None:intergenic 55.0%
TGGTGGAGAGATGGGTGAGA+TGG - Chr6:6794963-6794982 None:intergenic 55.0%
TTAAGGAGGCTAGGCTACGG+CGG + Chr6:6796746-6796765 MsG0680030658.01.T01:intron 55.0%
! ACTGGTGCACAGCAGGTTGA+TGG - Chr6:6797018-6797037 None:intergenic 55.0%
! ATGCTGTACTGGTGCACAGC+AGG - Chr6:6797025-6797044 None:intergenic 55.0%
! ATGGTGCAACGGTGCTGGAA+TGG + Chr6:6796978-6796997 MsG0680030658.01.T01:intron 55.0%
! CTTTGGAGATTTGCCGCCTC+AGG + Chr6:6797531-6797550 MsG0680030658.01.T01:CDS 55.0%
! GATGCAGGAGCGCAATAGTG+CGG + Chr6:6796899-6796918 MsG0680030658.01.T01:intron 55.0%
! GGTGGGACTGGTAGGAAAAC+AGG + Chr6:6796767-6796786 MsG0680030658.01.T01:intron 55.0%
!! AAAGCCTAAGGAGGGGCGTT+TGG + Chr6:6798500-6798519 MsG0680030658.01.T01:intron 55.0%
!! CAGGTTGATGGACCTCGTCA+CGG - Chr6:6797006-6797025 None:intergenic 55.0%
!! GGTTGTTGGTGATGCGTGAG+AGG - Chr6:6794941-6794960 None:intergenic 55.0%
ACGGCGGAGGAAGAAGAGAG+AGG - Chr6:6794994-6795013 None:intergenic 60.0%
AGAAGAGAGAGGGGAGAGGG+TGG - Chr6:6794983-6795002 None:intergenic 60.0%
AGAGAAAGGGTCGACGGTGG+GGG - Chr6:6795019-6795038 None:intergenic 60.0%
CAACGTCGTCTCCGTCAACG+TGG - Chr6:6795058-6795077 None:intergenic 60.0%
CCTCGGCCAACATCACACTC+AGG - Chr6:6796822-6796841 None:intergenic 60.0%
CCTGAGTGTGATGTTGGCCG+AGG + Chr6:6796819-6796838 MsG0680030658.01.T01:intron 60.0%
CGAAGATGGTGCAACGGTGC+TGG + Chr6:6796973-6796992 MsG0680030658.01.T01:intron 60.0%
CGGCGGAGGAAGAAGAGAGA+GGG - Chr6:6794993-6795012 None:intergenic 60.0%
CGTTGCACCATCTTCGCCGT+AGG - Chr6:6796969-6796988 None:intergenic 60.0%
GCCGTCATCAGAGGAAGTGG+AGG + Chr6:6799277-6799296 MsG0680030658.01.T01:CDS 60.0%
GCTTCCAAACGCCCCTCCTT+AGG - Chr6:6798507-6798526 None:intergenic 60.0%
GGCGGAGGAAGAAGAGAGAG+GGG - Chr6:6794992-6795011 None:intergenic 60.0%
GTGTGATGTTGGCCGAGGCT+TGG + Chr6:6796824-6796843 MsG0680030658.01.T01:intron 60.0%
TCGGCCGTCATCAGAGGAAG+TGG + Chr6:6799274-6799293 MsG0680030658.01.T01:CDS 60.0%
! AGTGCGGTAATGGTGTGGGG+TGG + Chr6:6796915-6796934 MsG0680030658.01.T01:intron 60.0%
!! GGAGAGGGTGGTGGAGAGAT+GGG - Chr6:6794971-6794990 None:intergenic 60.0%
AGAAAGGGTCGACGGTGGGG+GGG - Chr6:6795017-6795036 None:intergenic 65.0%
AGAGAGAGGGGAGAGGGTGG+TGG - Chr6:6794980-6794999 None:intergenic 65.0%
CGTCGTCTCCGTCAACGTGG+TGG - Chr6:6795055-6795074 None:intergenic 65.0%
GAGAAAGGGTCGACGGTGGG+GGG - Chr6:6795018-6795037 None:intergenic 65.0%
GATGTTGGCCGAGGCTTGGC+CGG + Chr6:6796828-6796847 MsG0680030658.01.T01:intron 65.0%
GCTGGAATGGCACCGTGACG+AGG + Chr6:6796991-6797010 MsG0680030658.01.T01:intron 65.0%
GTCTCCGTCAACGTGGTGGC+AGG - Chr6:6795051-6795070 None:intergenic 65.0%
GTGGGCGCCATGGCGCTTTA+TGG - Chr6:6797909-6797928 None:intergenic 65.0%
!! GGGAGAGGGTGGTGGAGAGA+TGG - Chr6:6794972-6794991 None:intergenic 65.0%
!! GTGAAGGATGGTGGGCGCCA+TGG - Chr6:6797919-6797938 None:intergenic 65.0%
AGGAGGCTAGGCTACGGCGG+TGG + Chr6:6796749-6796768 MsG0680030658.01.T01:intron 70.0%
CTAGGCTACGGCGGTGGGAC+TGG + Chr6:6796755-6796774 MsG0680030658.01.T01:intron 70.0%
GGAGGCTAGGCTACGGCGGT+GGG + Chr6:6796750-6796769 MsG0680030658.01.T01:intron 70.0%
! GCTACGGCGGTGGGACTGGT+AGG + Chr6:6796759-6796778 MsG0680030658.01.T01:intron 70.0%
AGGGTCGACGGTGGGGGGGA+CGG - Chr6:6795013-6795032 None:intergenic 75.0%
! GTCGACGGTGGGGGGGACGG+CGG - Chr6:6795010-6795029 None:intergenic 80.0%
! GACGGTGGGGGGGACGGCGG+AGG - Chr6:6795007-6795026 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6794762 6800249 6794762 ID=MsG0680030658.01;Name=MsG0680030658.01
Chr6 mRNA 6794762 6800249 6794762 ID=MsG0680030658.01.T01;Parent=MsG0680030658.01;Name=MsG0680030658.01.T01;_AED=0.37;_eAED=0.37;_QI=141|1|1|1|1|1|5|309|360
Chr6 exon 6794762 6795315 6794762 ID=MsG0680030658.01.T01:exon:6414;Parent=MsG0680030658.01.T01
Chr6 exon 6797327 6797603 6797327 ID=MsG0680030658.01.T01:exon:6415;Parent=MsG0680030658.01.T01
Chr6 exon 6798834 6798932 6798834 ID=MsG0680030658.01.T01:exon:6416;Parent=MsG0680030658.01.T01
Chr6 exon 6799260 6799477 6799260 ID=MsG0680030658.01.T01:exon:6417;Parent=MsG0680030658.01.T01
Chr6 exon 6799865 6800249 6799865 ID=MsG0680030658.01.T01:exon:6418;Parent=MsG0680030658.01.T01
Chr6 five_prime_UTR 6794762 6794902 6794762 ID=MsG0680030658.01.T01:five_prime_utr;Parent=MsG0680030658.01.T01
Chr6 CDS 6794903 6795315 6794903 ID=MsG0680030658.01.T01:cds;Parent=MsG0680030658.01.T01
Chr6 CDS 6797327 6797603 6797327 ID=MsG0680030658.01.T01:cds;Parent=MsG0680030658.01.T01
Chr6 CDS 6798834 6798932 6798834 ID=MsG0680030658.01.T01:cds;Parent=MsG0680030658.01.T01
Chr6 CDS 6799260 6799477 6799260 ID=MsG0680030658.01.T01:cds;Parent=MsG0680030658.01.T01
Chr6 CDS 6799865 6799940 6799865 ID=MsG0680030658.01.T01:cds;Parent=MsG0680030658.01.T01
Chr6 three_prime_UTR 6799941 6800249 6799941 ID=MsG0680030658.01.T01:three_prime_utr;Parent=MsG0680030658.01.T01
Gene Sequence

>MsG0680030658.01.T01

ATGGCAGCATCAACAATTTCATCTCAACCCTTCATCCTCTCACGCATCACCAACAACCCATCTCACCCATCTCTCCACCACCCTCTCCCCTCTCTCTTCTTCCTCCGCCGTCCCCCCCACCGTCGACCCTTTCTCTTCACTACATCCTGCCACCACGTTGACGGAGACGACGTTGTTTCGACGCGTAAATCAACGTTCAACCGTGGCTTCACAGTGATATCTAAAATGCTTCGACGTATCAAACCTCTCGATAACTCCGTTATCTCTAAAGGTGTTTCTGAAGCTTCTAAAGATTCTATGAAACAAACTATTTCTACTATGCTTGGTTTGTTACCTTCTGATCATTTTGATGTTACTGTTAGTTTTGAGATTCAACCTCTTCATCGGTTACTTGTTTCTTCTATCATCACTGGGTACACACTGTGGAATGCAGAGTACAGGATGTCCTTGACGAGGAATCTGGAAATATCACATGCGGATCAAGGGGCGGATTGTGAAACGCCTTTAGAGAGTTTGGAGGTGAAGGGTGGTGAAGAACATGGGGAAACTGAGAAGGTTGTTTCTGATTTGGGGTTAGCGAATTCGGAAACTTACAGCAGCAGTAATGGCGCAGGAGTCTTTGGAGATTTGCCGCCTCAGGCTCTGAAATACATTCAGCAGTTGCAGTCTGAGTTGACAAACATGAAGGAGGAGTTGAATGCCCAGAAGCAGGAAATGATGCAATTAGAACACGACAGAGGAATTCGGAACAATTTGCTGGAATATCTTCGCTCTTTCGATCCTGATATGGTGACTGAAATGTCTCGGCCGTCATCAGAGGAAGTGGAGGATATAATTCACCAACTTGTTCAAAACATTTTGAGAAGATTCCTTGTCGACGAAGCTAGCTCTAACTTTATGGAACAATCAGTAGAAGGAAACATAGACTATCACCCGGACGATGATGGTGATGAGTTTAGTGATAAAATAGCCACTTCTCGCGATTACCTAGCAAAGTTGCTTTTCTGGTGTATGTTATTAGGTCATCACTTAAGAGGATTGGAAAACAGATTGCATTTGAGCTGTGTTGTCGGACTTTTATAG

Protein sequence

>MsG0680030658.01.T01

MAASTISSQPFILSRITNNPSHPSLHHPLPSLFFLRRPPHRRPFLFTTSCHHVDGDDVVSTRKSTFNRGFTVISKMLRRIKPLDNSVISKGVSEASKDSMKQTISTMLGLLPSDHFDVTVSFEIQPLHRLLVSSIITGYTLWNAEYRMSLTRNLEISHADQGADCETPLESLEVKGGEEHGETEKVVSDLGLANSETYSSSNGAGVFGDLPPQALKYIQQLQSELTNMKEELNAQKQEMMQLEHDRGIRNNLLEYLRSFDPDMVTEMSRPSSEEVEDIIHQLVQNILRRFLVDEASSNFMEQSVEGNIDYHPDDDGDEFSDKIATSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVGLL*