AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035870.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035870.01.T01 MTR_6g092630 76.543 81 2 1 1 81 154 217 1.19e-35 122
MsG0680035870.01.T01 MTR_6g092630 76.543 81 2 1 1 81 154 217 1.26e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035870.01.T01 AT4G29590 62.963 81 13 1 1 81 163 226 6.21e-30 108

Find 61 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAGAGCAATTCCCCTTTA+AGG 0.183158 6:-113689543 MsG0680035870.01.T01:five_prime_UTR
TTGGAAATCCTCCTCCTTAA+AGG 0.202462 6:+113689529 None:intergenic
TCTTCAATTCTTCTTCATTC+AGG 0.212937 6:+113688441 None:intergenic
ATCACTAACATGTCTGCTTC+TGG 0.261998 6:-113690221 MsG0680035870.01.T01:five_prime_UTR
TACTCCTGGAGTAAGCATTT+TGG 0.266866 6:-113688617 MsG0680035870.01.T01:five_prime_UTR
ATGCCTCGTCGCATGTTATT+AGG 0.281645 6:-113690275 MsG0680035870.01.T01:five_prime_UTR
CAGAAAGCGGGTTGTCTTAC+CGG 0.292747 6:+113688413 None:intergenic
AACTCGTTCTTGCTTGTATC+CGG 0.295022 6:+113688475 None:intergenic
TATCTTCAAATGAGAGTTTA+GGG 0.299222 6:+113687978 None:intergenic
TTATCTTCAAATGAGAGTTT+AGG 0.310263 6:+113687977 None:intergenic
CGTCGCATGTTATTAGGCTT+TGG 0.338051 6:-113690269 MsG0680035870.01.T01:five_prime_UTR
TGGAAATCCTCCTCCTTAAA+GGG 0.361434 6:+113689530 None:intergenic
TAACCTTAGTCCAACAAAAT+TGG 0.367131 6:+113690387 None:intergenic
CGCTGGTCCCTCTGTTGATC+AGG 0.373827 6:-113690166 MsG0680035870.01.T01:intron
GCTTGTATCCGGGTGGAAAA+TGG 0.376192 6:+113688486 None:intergenic
GTTACCAGTGTGGCATGTAT+TGG 0.403300 6:-113690368 MsG0680035870.01.T01:five_prime_UTR
CAAGAACGAGTTGTAGGATT+AGG 0.428759 6:-113688464 MsG0680035870.01.T01:CDS
TAGTCTAGTCTAGTCTATCT+AGG 0.434144 6:+113690488 None:intergenic
TTAGTCAGAGCAGCAATTGC+AGG 0.435836 6:+113688669 None:intergenic
TCCTTAAAGGGGAATTGCTC+TGG 0.443401 6:+113689542 None:intergenic
ACTAGACTAGACTAGATTGT+AGG 0.452032 6:-113690474 MsG0680035870.01.T01:five_prime_UTR
TTACCAGTGTGGCATGTATT+GGG 0.458838 6:-113690367 MsG0680035870.01.T01:five_prime_UTR
ACTCGTTCTTGCTTGTATCC+GGG 0.477291 6:+113688476 None:intergenic
TTTCCACCTAGCAATACTCC+TGG 0.496964 6:-113688631 MsG0680035870.01.T01:five_prime_UTR
GCAATTCCCCTTTAAGGAGG+AGG 0.507491 6:-113689537 MsG0680035870.01.T01:five_prime_UTR
AGAAAGCGGGTTGTCTTACC+GGG 0.508909 6:+113688414 None:intergenic
TTTGTAGATATTGAAGAATG+TGG 0.529167 6:-113689570 MsG0680035870.01.T01:intron
TGCTTCTGCAAAATAACCGC+TGG 0.536072 6:-113690183 MsG0680035870.01.T01:five_prime_UTR
GAAGAAACAGTACGAGGATG+TGG 0.537813 6:+113690333 None:intergenic
TACAAGCAAGAACGAGTTGT+AGG 0.540637 6:-113688470 MsG0680035870.01.T01:CDS
ACGAGGATGTGGTGTGGGTG+TGG 0.552046 6:+113690344 None:intergenic
AGAAGAATTGAAGAGGAACC+CGG 0.559960 6:-113688432 MsG0680035870.01.T01:CDS
CATGGTAATACTGTCACCGT+TGG 0.573739 6:+113690513 None:intergenic
ACATCCAAAATGCTTACTCC+AGG 0.586682 6:+113688613 None:intergenic
GTTGCTTCTGTAGGTCCTCA+CGG 0.591552 6:-113688029 MsG0680035870.01.T01:intron
TAGTCAGAGCAGCAATTGCA+GGG 0.591972 6:+113688670 None:intergenic
CTTACTCCAGGAGTATTGCT+AGG 0.592913 6:+113688625 None:intergenic
TGGCCCAATACATGCCACAC+TGG 0.596241 6:+113690364 None:intergenic
TGAATGAAGAAGAATTGAAG+AGG 0.598010 6:-113688439 MsG0680035870.01.T01:CDS
TGCCACATAGCACAGAAAGC+GGG 0.601569 6:+113688401 None:intergenic
GAACTTACTCATCATAACGT+TGG 0.605167 6:+113689510 None:intergenic
AACCCGCTTTCTGTGCTATG+TGG 0.610352 6:-113688403 MsG0680035870.01.T01:CDS
ACAGTACGAGGATGTGGTGT+GGG 0.617229 6:+113690339 None:intergenic
CGTTCTTGCTTGTATCCGGG+TGG 0.620983 6:+113688479 None:intergenic
GGAAATCCTCCTCCTTAAAG+GGG 0.624737 6:+113689531 None:intergenic
AGACAAACCTGATCAACAGA+GGG 0.625013 6:+113690159 None:intergenic
TTGCCACATAGCACAGAAAG+CGG 0.631600 6:+113688400 None:intergenic
TTTCGATGTCATCACTAATG+TGG 0.633015 6:-113687951 MsG0680035870.01.T01:CDS
TCGATGTGTGTTACGAATCG+AGG 0.637675 6:+113688696 None:intergenic
TTGGACTAAGGTTACCAGTG+TGG 0.638264 6:-113690378 MsG0680035870.01.T01:five_prime_UTR
AGAGCAATTCCCCTTTAAGG+AGG 0.643048 6:-113689540 MsG0680035870.01.T01:five_prime_UTR
GTCTAGTCTATCTAGGAACA+TGG 0.655931 6:+113690495 None:intergenic
TGTGGCAATGTTGTCAAACG+CGG 0.670257 6:-113688385 MsG0680035870.01.T01:CDS
TAGACAAACCTGATCAACAG+AGG 0.681494 6:+113690158 None:intergenic
AGATATTGAAGAATGTGGAA+TGG 0.686438 6:-113689565 MsG0680035870.01.T01:five_prime_UTR
CTGATCAACAGAGGGACCAG+CGG 0.689416 6:+113690167 None:intergenic
CATGAAGAAGAAACAGTACG+AGG 0.701975 6:+113690327 None:intergenic
AACAGTACGAGGATGTGGTG+TGG 0.702946 6:+113690338 None:intergenic
CTTGTACAGTATACTCCGTG+AGG 0.730572 6:+113688014 None:intergenic
ACTCCAGGAGTATTGCTAGG+TGG 0.733458 6:+113688628 None:intergenic
AAGCCTAATAACATGCGACG+AGG 0.749696 6:+113690272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTAACAAAAATTAA+GGG + Chr6:113689662-113689681 None:intergenic 10.0%
!! TTAATTAAAAATTAATGACT+TGG - Chr6:113690332-113690351 MsG0680035870.01.T01:five_prime_UTR 10.0%
!! AAAAACTAACAAAAATTAAG+GGG + Chr6:113689661-113689680 None:intergenic 15.0%
!! GTAAAAACTAACAAAAATTA+AGG + Chr6:113689663-113689682 None:intergenic 15.0%
!!! ATAATTTTTGTTAGATTGTT+TGG + Chr6:113689549-113689568 None:intergenic 15.0%
!!! GATTTTTACATACAAATTTA+TGG - Chr6:113688629-113688648 MsG0680035870.01.T01:five_prime_UTR 15.0%
!!! TTTATTATCTTTTGATTTTC+TGG - Chr6:113689257-113689276 MsG0680035870.01.T01:intron 15.0%
!!! TTTTCATCTTAAATTACTAT+CGG + Chr6:113688379-113688398 None:intergenic 15.0%
!! AAAACTAACAAAAATTAAGG+GGG + Chr6:113689660-113689679 None:intergenic 20.0%
!! ATAAAGGTAGAATTGAAAAT+TGG - Chr6:113688789-113688808 MsG0680035870.01.T01:intron 20.0%
!! ATTCTTCAATATCTACAAAA+AGG + Chr6:113688865-113688884 None:intergenic 20.0%
!!! ATTTGTTCATAAGTTGTTTT+CGG + Chr6:113689514-113689533 None:intergenic 20.0%
!!! ATTTTTAATGTCTAGAAACA+TGG - Chr6:113690367-113690386 MsG0680035870.01.T01:five_prime_UTR 20.0%
! AAAATTAAGGTTCAAAATGG+TGG + Chr6:113689301-113689320 None:intergenic 25.0%
! AACTATACTTTGGTTATGTT+TGG - Chr6:113689369-113689388 MsG0680035870.01.T01:intron 25.0%
! ATAAATCTTCACTTTGCATT+AGG - Chr6:113689923-113689942 MsG0680035870.01.T01:intron 25.0%
! ATTGAAATGTATTGAAACGA+AGG + Chr6:113688318-113688337 None:intergenic 25.0%
! CAATCTAGAAAAGTAATCTT+AGG + Chr6:113690254-113690273 None:intergenic 25.0%
! CAGAAAATTAAGGTTCAAAA+TGG + Chr6:113689304-113689323 None:intergenic 25.0%
! CTAACAAAACAACTATACTT+TGG - Chr6:113689359-113689378 MsG0680035870.01.T01:intron 25.0%
! GACTTATTTCAACTTATCTA+TGG + Chr6:113689573-113689592 None:intergenic 25.0%
! TAATGATGTCTAGTATTCTT+AGG - Chr6:113689084-113689103 MsG0680035870.01.T01:intron 25.0%
! TATCTTCAAATGAGAGTTTA+GGG + Chr6:113690461-113690480 None:intergenic 25.0%
! TTAGGATACCAATTTCAAAA+TGG + Chr6:113690236-113690255 None:intergenic 25.0%
! TTATCTTCAAATGAGAGTTT+AGG + Chr6:113690462-113690481 None:intergenic 25.0%
! TTTGTAGATATTGAAGAATG+TGG - Chr6:113688866-113688885 MsG0680035870.01.T01:intron 25.0%
!! ATATCTACAAAAAGGTATAG+TGG + Chr6:113688857-113688876 None:intergenic 25.0%
!! ATATTTAGTTCGACTTCTAA+AGG - Chr6:113688484-113688503 MsG0680035870.01.T01:CDS 25.0%
!! TATCAGAAAATTTTCCCTTT+AGG - Chr6:113689690-113689709 MsG0680035870.01.T01:intron 25.0%
!! TATCTACAAAAAGGTATAGT+GGG + Chr6:113688856-113688875 None:intergenic 25.0%
!! TATTTAGTTCGACTTCTAAA+GGG - Chr6:113688485-113688504 MsG0680035870.01.T01:CDS 25.0%
!!! CTAAGATTACTTTTCTAGAT+TGG - Chr6:113690252-113690271 MsG0680035870.01.T01:five_prime_UTR 25.0%
AAAAATTAAGGGGGTAATTG+GGG + Chr6:113689651-113689670 None:intergenic 30.0%
AAGCTCAAGACAGAAAATTA+AGG + Chr6:113689314-113689333 None:intergenic 30.0%
AAGTTCTTCAAGATAGCTTA+TGG + Chr6:113689480-113689499 None:intergenic 30.0%
AATAAGTGATTCTTGAAGCT+AGG - Chr6:113688581-113688600 MsG0680035870.01.T01:intron 30.0%
ACAAAAATTAAGGGGGTAAT+TGG + Chr6:113689653-113689672 None:intergenic 30.0%
AGATATTGAAGAATGTGGAA+TGG - Chr6:113688871-113688890 MsG0680035870.01.T01:intron 30.0%
AGATTGTAGGTAGCAAAAAA+AGG - Chr6:113687975-113687994 MsG0680035870.01.T01:CDS 30.0%
ATACTAGACATCATTACCTA+AGG + Chr6:113689080-113689099 None:intergenic 30.0%
ATTGAATGTAATACATGCGT+CGG - Chr6:113688406-113688425 MsG0680035870.01.T01:CDS 30.0%
CAAAAATTAAGGGGGTAATT+GGG + Chr6:113689652-113689671 None:intergenic 30.0%
CAACGCAAATTCAAACATAA+AGG - Chr6:113688773-113688792 MsG0680035870.01.T01:intron 30.0%
CTTAAATGTAAGATCCTGTT+TGG + Chr6:113689599-113689618 None:intergenic 30.0%
TAACCTTAGTCCAACAAAAT+TGG + Chr6:113688052-113688071 None:intergenic 30.0%
TCTTCAATTCTTCTTCATTC+AGG + Chr6:113689998-113690017 None:intergenic 30.0%
TGAAATAAGTCAATCCAAAC+AGG - Chr6:113689582-113689601 MsG0680035870.01.T01:intron 30.0%
TGAATGAAGAAGAATTGAAG+AGG - Chr6:113689997-113690016 MsG0680035870.01.T01:intron 30.0%
TTGGGGTAAGATTTATGAAA+TGG + Chr6:113689634-113689653 None:intergenic 30.0%
TTGTACTAAATAGCGTATTG+TGG - Chr6:113690154-113690173 MsG0680035870.01.T01:intron 30.0%
!!! TGTTTTGTTAGCTTTTGCAA+AGG + Chr6:113689350-113689369 None:intergenic 30.0%
AAGAAAGTAAACCAGTCCTT+AGG - Chr6:113689061-113689080 MsG0680035870.01.T01:intron 35.0%
ACAACAGCACTATAACATAG+CGG + Chr6:113690203-113690222 None:intergenic 35.0%
ACACCTTTGATAAGATGTGT+AGG - Chr6:113688442-113688461 MsG0680035870.01.T01:CDS 35.0%
ACTAGACTAGACTAGATTGT+AGG - Chr6:113687962-113687981 MsG0680035870.01.T01:CDS 35.0%
AGCAACGGTTTCTATCAATA+AGG + Chr6:113690393-113690412 None:intergenic 35.0%
ATGATGAGTAAGTTCACATG+TGG - Chr6:113688934-113688953 MsG0680035870.01.T01:intron 35.0%
CTACACTTCAAAATCAATGC+TGG + Chr6:113688511-113688530 None:intergenic 35.0%
GAACTTACTCATCATAACGT+TGG + Chr6:113688929-113688948 None:intergenic 35.0%
GCTTCAAGAATCACTTATTG+AGG + Chr6:113688580-113688599 None:intergenic 35.0%
TAGTCTAGTCTAGTCTATCT+AGG + Chr6:113687951-113687970 None:intergenic 35.0%
TTTCGATGTCATCACTAATG+TGG - Chr6:113690485-113690504 MsG0680035870.01.T01:five_prime_UTR 35.0%
! AAGCTAGGATTTGTAGCTTT+TGG - Chr6:113688596-113688615 MsG0680035870.01.T01:intron 35.0%
! ACAAAAAGGTATAGTGGGAT+GGG + Chr6:113688851-113688870 None:intergenic 35.0%
! ATTTTGGATGTGTAGCAGTT+GGG - Chr6:113689835-113689854 MsG0680035870.01.T01:intron 35.0%
! CTGAAGATGACCAATTTTGT+TGG - Chr6:113688039-113688058 MsG0680035870.01.T01:intron 35.0%
! GCGTTGACAAGAATTGATTT+AGG + Chr6:113688759-113688778 None:intergenic 35.0%
! TACAAAAAGGTATAGTGGGA+TGG + Chr6:113688852-113688871 None:intergenic 35.0%
! TATGTTATAGTGCTGTTGTG+TGG - Chr6:113690204-113690223 MsG0680035870.01.T01:five_prime_UTR 35.0%
! TGACCAATTTTGTTGGACTA+AGG - Chr6:113688046-113688065 MsG0680035870.01.T01:intron 35.0%
!! TTATTTTGCAGAAGCAATGG+AGG + Chr6:113688249-113688268 None:intergenic 35.0%
!!! GGTAGTAGCCATTTTGAAAT+TGG - Chr6:113690225-113690244 MsG0680035870.01.T01:five_prime_UTR 35.0%
AACTCGTTCTTGCTTGTATC+CGG + Chr6:113689964-113689983 None:intergenic 40.0%
ACATCCAAAATGCTTACTCC+AGG + Chr6:113689826-113689845 None:intergenic 40.0%
AGAAGAATTGAAGAGGAACC+CGG - Chr6:113690004-113690023 MsG0680035870.01.T01:intron 40.0%
AGACAAACCTGATCAACAGA+GGG + Chr6:113688280-113688299 None:intergenic 40.0%
AGACATCATTACCTAAGGAC+TGG + Chr6:113689075-113689094 None:intergenic 40.0%
ATAGAAACCGTTGCTTCTGT+AGG - Chr6:113690398-113690417 MsG0680035870.01.T01:five_prime_UTR 40.0%
ATCACTAACATGTCTGCTTC+TGG - Chr6:113688215-113688234 MsG0680035870.01.T01:intron 40.0%
CAAGAACGAGTTGTAGGATT+AGG - Chr6:113689972-113689991 MsG0680035870.01.T01:intron 40.0%
CATGAAGAAGAAACAGTACG+AGG + Chr6:113688112-113688131 None:intergenic 40.0%
GAGTCTTACAAGCAAGCTTA+TGG - Chr6:113689154-113689173 MsG0680035870.01.T01:intron 40.0%
GCACCTACACATCTTATCAA+AGG + Chr6:113688448-113688467 None:intergenic 40.0%
GCAGAATCTGATGACCTAAA+GGG + Chr6:113689707-113689726 None:intergenic 40.0%
GTCTAGTCTATCTAGGAACA+TGG + Chr6:113687944-113687963 None:intergenic 40.0%
TACAAGCAAGAACGAGTTGT+AGG - Chr6:113689966-113689985 MsG0680035870.01.T01:intron 40.0%
TAGACAAACCTGATCAACAG+AGG + Chr6:113688281-113688300 None:intergenic 40.0%
TGCAGAATCTGATGACCTAA+AGG + Chr6:113689708-113689727 None:intergenic 40.0%
TGGAAATCCTCCTCCTTAAA+GGG + Chr6:113688909-113688928 None:intergenic 40.0%
TTACAAGCAAGCTTATGGCT+TGG - Chr6:113689159-113689178 MsG0680035870.01.T01:intron 40.0%
TTACCAGTGTGGCATGTATT+GGG - Chr6:113688069-113688088 MsG0680035870.01.T01:intron 40.0%
TTGGAAATCCTCCTCCTTAA+AGG + Chr6:113688910-113688929 None:intergenic 40.0%
TTGTCAAATAGCGTCTACTG+TGG + Chr6:113690130-113690149 None:intergenic 40.0%
! CATTTTGGATGTGTAGCAGT+TGG - Chr6:113689834-113689853 MsG0680035870.01.T01:intron 40.0%
! TACTCCTGGAGTAAGCATTT+TGG - Chr6:113689819-113689838 MsG0680035870.01.T01:intron 40.0%
!! CGGTTATTTTGCAGAAGCAA+TGG + Chr6:113688252-113688271 None:intergenic 40.0%
AAGCCTAATAACATGCGACG+AGG + Chr6:113688167-113688186 None:intergenic 45.0%
ACTCGTTCTTGCTTGTATCC+GGG + Chr6:113689963-113689982 None:intergenic 45.0%
ATGCCTCGTCGCATGTTATT+AGG - Chr6:113688161-113688180 MsG0680035870.01.T01:intron 45.0%
CGTCGCATGTTATTAGGCTT+TGG - Chr6:113688167-113688186 MsG0680035870.01.T01:intron 45.0%
CTTGTACAGTATACTCCGTG+AGG + Chr6:113690425-113690444 None:intergenic 45.0%
GAAGAAACAGTACGAGGATG+TGG + Chr6:113688106-113688125 None:intergenic 45.0%
GGAAATCCTCCTCCTTAAAG+GGG + Chr6:113688908-113688927 None:intergenic 45.0%
GTTACCAGTGTGGCATGTAT+TGG - Chr6:113688068-113688087 MsG0680035870.01.T01:intron 45.0%
TAGTCAGAGCAGCAATTGCA+GGG + Chr6:113689769-113689788 None:intergenic 45.0%
TCCTTAAAGGGGAATTGCTC+TGG + Chr6:113688897-113688916 None:intergenic 45.0%
TCGATGTGTGTTACGAATCG+AGG + Chr6:113689743-113689762 None:intergenic 45.0%
TGCTTCTGCAAAATAACCGC+TGG - Chr6:113688253-113688272 MsG0680035870.01.T01:intron 45.0%
TGTGGCAATGTTGTCAAACG+CGG - Chr6:113690051-113690070 MsG0680035870.01.T01:intron 45.0%
TTAGTCAGAGCAGCAATTGC+AGG + Chr6:113689770-113689789 None:intergenic 45.0%
TTGCCACATAGCACAGAAAG+CGG + Chr6:113690039-113690058 None:intergenic 45.0%
TTGGACTAAGGTTACCAGTG+TGG - Chr6:113688058-113688077 MsG0680035870.01.T01:intron 45.0%
TTTCCACCTAGCAATACTCC+TGG - Chr6:113689805-113689824 MsG0680035870.01.T01:intron 45.0%
! AGAGCAATTCCCCTTTAAGG+AGG - Chr6:113688896-113688915 MsG0680035870.01.T01:intron 45.0%
! ATGTAATACATGCGTCGGTG+TGG - Chr6:113688411-113688430 MsG0680035870.01.T01:CDS 45.0%
!! CTTACTCCAGGAGTATTGCT+AGG + Chr6:113689814-113689833 None:intergenic 45.0%
!!! TTTTAATTAAATTTAAGTAT+TGG + Chr6:113690322-113690341 None:intergenic 5.0%
AACAGTACGAGGATGTGGTG+TGG + Chr6:113688101-113688120 None:intergenic 50.0%
AACCCGCTTTCTGTGCTATG+TGG - Chr6:113690033-113690052 MsG0680035870.01.T01:intron 50.0%
ACAGTACGAGGATGTGGTGT+GGG + Chr6:113688100-113688119 None:intergenic 50.0%
GCCAGAGCAATTCCCCTTTA+AGG - Chr6:113688893-113688912 MsG0680035870.01.T01:intron 50.0%
GCTTGTATCCGGGTGGAAAA+TGG + Chr6:113689953-113689972 None:intergenic 50.0%
GTGAGGACCTACAGAAGCAA+CGG + Chr6:113690408-113690427 None:intergenic 50.0%
GTTGCTTCTGTAGGTCCTCA+CGG - Chr6:113690407-113690426 MsG0680035870.01.T01:five_prime_UTR 50.0%
TGCCACATAGCACAGAAAGC+GGG + Chr6:113690038-113690057 None:intergenic 50.0%
! GCAATTCCCCTTTAAGGAGG+AGG - Chr6:113688899-113688918 MsG0680035870.01.T01:intron 50.0%
! GGTATAGTGGGATGGGACAA+AGG + Chr6:113688844-113688863 None:intergenic 50.0%
!! ACTCCAGGAGTATTGCTAGG+TGG + Chr6:113689811-113689830 None:intergenic 50.0%
!! AGAAAGCGGGTTGTCTTACC+GGG + Chr6:113690025-113690044 None:intergenic 50.0%
!! CAGAAAGCGGGTTGTCTTAC+CGG + Chr6:113690026-113690045 None:intergenic 50.0%
!! TAGGTCAGCCATTTTCCACC+CGG - Chr6:113689942-113689961 MsG0680035870.01.T01:intron 50.0%
CGTTCTTGCTTGTATCCGGG+TGG + Chr6:113689960-113689979 None:intergenic 55.0%
CTGATCAACAGAGGGACCAG+CGG + Chr6:113688272-113688291 None:intergenic 55.0%
TGGCCCAATACATGCCACAC+TGG + Chr6:113688075-113688094 None:intergenic 55.0%
ACGAGGATGTGGTGTGGGTG+TGG + Chr6:113688095-113688114 None:intergenic 60.0%
CGCTGGTCCCTCTGTTGATC+AGG - Chr6:113688270-113688289 MsG0680035870.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 113687925 113690533 113687925 ID=MsG0680035870.01;Name=MsG0680035870.01
Chr6 mRNA 113687925 113690533 113687925 ID=MsG0680035870.01.T01;Parent=MsG0680035870.01;Name=MsG0680035870.01.T01;_AED=0.49;_eAED=0.53;_QI=565|0.75|0.6|1|0|0|5|0|86
Chr6 exon 113687925 113688038 113687925 ID=MsG0680035870.01.T01:exon:15361;Parent=MsG0680035870.01.T01
Chr6 exon 113688382 113688513 113688382 ID=MsG0680035870.01.T01:exon:15360;Parent=MsG0680035870.01.T01
Chr6 exon 113688602 113688746 113688602 ID=MsG0680035870.01.T01:exon:15359;Parent=MsG0680035870.01.T01
Chr6 exon 113689518 113689585 113689518 ID=MsG0680035870.01.T01:exon:15358;Parent=MsG0680035870.01.T01
Chr6 exon 113690167 113690533 113690167 ID=MsG0680035870.01.T01:exon:15357;Parent=MsG0680035870.01.T01
Chr6 five_prime_UTR 113690167 113690533 113690167 ID=MsG0680035870.01.T01:five_prime_utr;Parent=MsG0680035870.01.T01
Chr6 five_prime_UTR 113689518 113689585 113689518 ID=MsG0680035870.01.T01:five_prime_utr;Parent=MsG0680035870.01.T01
Chr6 five_prime_UTR 113688617 113688746 113688617 ID=MsG0680035870.01.T01:five_prime_utr;Parent=MsG0680035870.01.T01
Chr6 CDS 113688602 113688616 113688602 ID=MsG0680035870.01.T01:cds;Parent=MsG0680035870.01.T01
Chr6 CDS 113688382 113688513 113688382 ID=MsG0680035870.01.T01:cds;Parent=MsG0680035870.01.T01
Chr6 CDS 113687925 113688038 113687925 ID=MsG0680035870.01.T01:cds;Parent=MsG0680035870.01.T01
Gene Sequence

>MsG0680035870.01.T01

ATGTGTAGCAGTTGGGTCAGCCATTTTCCACCCGGATACAAGCAAGAACGAGTTGTAGGATTAGGCCTGAATGAAGAAGAATTGAAGAGGAACCCGGTAAGACAACCCGCTTTCTGTGCTATGTGGCAATGTTGTCAAACGCGGAAAGTCCTCACGGAGTATACTGTACAAGACTTAAATGTGAACCCTAAACTCTCATTTGAAGATAACTCTTTCGATGTCATCACTAATGTGGTAAGAATATCTCTTCATATATTTTAA

Protein sequence

>MsG0680035870.01.T01

MCSSWVSHFPPGYKQERVVGLGLNEEELKRNPVRQPAFCAMWQCCQTRKVLTEYTVQDLNVNPKLSFEDNSFDVITNVVRISLHIF*