AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023386.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023386.01.T01 MTR_8g092030 94.944 178 8 1 3 179 1 178 3.80e-111 314
MsG0480023386.01.T01 MTR_8g092030 94.706 170 8 1 3 171 1 170 6.30e-105 298
MsG0480023386.01.T01 MTR_1g060070 36.134 119 73 2 57 175 8 123 1.57e-21 85.5
MsG0480023386.01.T01 MTR_7g104600 34.711 121 73 4 58 175 39 156 1.46e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023386.01.T01 AT1G10500 64.835 182 52 3 7 179 2 180 2.30e-76 226
MsG0480023386.01.T01 AT2G16710 37.719 114 63 3 67 175 14 124 1.31e-21 85.9
MsG0480023386.01.T01 AT2G16710 35.593 118 66 3 67 175 14 130 3.93e-21 84.7
MsG0480023386.01.T01 AT2G36260 33.962 106 66 3 70 175 5 106 1.20e-17 74.7
MsG0480023386.01.T01 AT5G03905 34.234 111 70 2 70 179 50 158 3.46e-17 75.1
MsG0480023386.01.T01 AT2G16710 35.366 82 50 2 70 151 22 100 7.60e-13 62.4

Find 53 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGCCTACTCTTCGTATT+TGG 0.197827 4:-84501674 MsG0480023386.01.T01:CDS
GATCGAATTGAGAGAGGTTT+AGG 0.272109 4:+84503192 MsG0480023384.01.T01:intron
CAATACTTCGGAGTAATTAT+AGG 0.301592 4:-84501494 MsG0480023386.01.T01:three_prime_UTR
CCACAGGTTTGTGTCGCATT+AGG 0.312594 4:+84501596 MsG0480023384.01.T01:intron
CAAGATTTGTGTTTAAGAAT+TGG 0.321991 4:-84502522 MsG0480023386.01.T01:CDS
GATTGGAACGCGAACGAATT+GGG 0.333118 4:+84503272 MsG0480023384.01.T01:intron
CCACAGCAAACAAACAGATA+TGG 0.339633 4:+84501408 MsG0480023384.01.T01:intron
AATACGAAGAGTAGGCTCTT+AGG 0.361492 4:+84501677 MsG0480023384.01.T01:intron
GAACAATATAATATAAATAC+TGG 0.367518 4:-84501351 MsG0480023386.01.T01:three_prime_UTR
TGATTGGAACGCGAACGAAT+TGG 0.382823 4:+84503271 MsG0480023384.01.T01:intron
GGTGCCACGGCCCCAGATGC+AGG 0.406436 4:+84502606 MsG0480023384.01.T01:intron
ATCGAATTGAGAGAGGTTTA+GGG 0.409502 4:+84503193 MsG0480023384.01.T01:intron
GAGAGAGAGCTATGAGTGAT+TGG 0.409580 4:+84503255 MsG0480023384.01.T01:intron
TGCACCTGCATCTGGGGCCG+TGG 0.436538 4:-84502610 MsG0480023386.01.T01:CDS
AAAACCTTTGTATTCAATGA+TGG 0.441255 4:+84502422 MsG0480023384.01.T01:intron
CTAAAGCGGCGATTGAGAAT+TGG 0.446890 4:+84503216 MsG0480023384.01.T01:intron
GACTACAGTGATGCTCTGAT+TGG 0.458599 4:-84501641 MsG0480023386.01.T01:CDS
GTCAAACAAGGTGGGTGCTC+TGG 0.472114 4:-84502498 MsG0480023386.01.T01:CDS
CACAGCAAACAAACAGATAT+GGG 0.474400 4:+84501409 MsG0480023384.01.T01:intron
CCATATCTGTTTGTTTGCTG+TGG 0.480157 4:-84501408 MsG0480023386.01.T01:three_prime_UTR
TGATGTATCAACAGAGAAAG+TGG 0.485024 4:+84501303 MsG0480023384.01.T01:intron
TTATCTGTAAGCGAAATTGC+AGG 0.509358 4:+84502585 MsG0480023384.01.T01:intron
GGGCTTACCGGCAGCAATAA+CGG 0.512066 4:+84503164 MsG0480023384.01.T01:intron
ATTGGAACGCGAACGAATTG+GGG 0.513543 4:+84503273 MsG0480023384.01.T01:intron
AAATGATTTACCACATCCAC+AGG 0.517325 4:+84501580 MsG0480023384.01.T01:intron
AAATCAAACATGGCCATGGC+TGG 0.519320 4:-84503336 MsG0480023386.01.T01:exon
AGACAATAGTTACAATACTA+AGG 0.522902 4:-84501530 MsG0480023386.01.T01:three_prime_UTR
TATTCAATGATGGAGTCGTC+TGG 0.526703 4:+84502432 MsG0480023384.01.T01:intron
TACAGTGATGCTCTGATTGG+AGG 0.527694 4:-84501638 MsG0480023386.01.T01:CDS
ACAATAAACTGATGCACCAC+AGG 0.539750 4:+84501385 MsG0480023384.01.T01:intron
TCACTTTCCGTTATTGCTGC+CGG 0.540114 4:-84503171 MsG0480023386.01.T01:intron
TGTTTGTTTGCTGTGGCCTG+TGG 0.558121 4:-84501401 MsG0480023386.01.T01:three_prime_UTR
TTTAGCTGCACCTGCATCTG+GGG 0.577576 4:-84502616 MsG0480023386.01.T01:intron
GCGACACAAACCTGTGGATG+TGG 0.581388 4:-84501590 MsG0480023386.01.T01:CDS
TTAAGAATTGGTGTCAAACA+AGG 0.584994 4:-84502510 MsG0480023386.01.T01:CDS
AAGCGAAATTGCAGGTGCCA+CGG 0.587731 4:+84502593 MsG0480023384.01.T01:intron
AGAATTGGTGTCAAACAAGG+TGG 0.587930 4:-84502507 MsG0480023386.01.T01:CDS
AGTGATGCTCTGATTGGAGG+AGG 0.589985 4:-84501635 MsG0480023386.01.T01:CDS
TTGAGGACAGGGCTAATGCA+AGG 0.598318 4:-84502455 MsG0480023386.01.T01:CDS
CAATTACTACTACCGCGCAC+TGG 0.599076 4:-84503299 MsG0480023386.01.T01:CDS
AGAGAGGTTTAGGGCTAAAG+CGG 0.601518 4:+84503202 MsG0480023384.01.T01:intron
GCATTCCAAATACGAAGAGT+AGG 0.603532 4:+84501669 MsG0480023384.01.T01:intron
ACACAAATCAAACATGGCCA+TGG 0.605803 4:-84503340 MsG0480023386.01.T01:exon
AGAGAAAGCAGCACCAGCCA+TGG 0.608264 4:+84503323 MsG0480023384.01.T01:intron
CTCTGGTATGTCATACACAA+TGG 0.609613 4:-84502481 MsG0480023386.01.T01:CDS
TTCTCTACACAAATCAAACA+TGG 0.615705 4:-84503346 MsG0480023386.01.T01:exon
GAATGTTTGAAGCAATACTT+CGG 0.618101 4:-84501506 MsG0480023386.01.T01:three_prime_UTR
GAAAGTGATCGAATTGAGAG+AGG 0.627615 4:+84503186 MsG0480023384.01.T01:intron
TCAATCACTTGAATAAGATG+AGG 0.638619 4:-84502557 MsG0480023386.01.T01:CDS
GAATTGGTGTCAAACAAGGT+GGG 0.648767 4:-84502506 MsG0480023386.01.T01:CDS
GACTCCATCATTGAATACAA+AGG 0.682577 4:-84502426 MsG0480023386.01.T01:CDS
CCTAATGCGACACAAACCTG+TGG 0.690717 4:-84501596 MsG0480023386.01.T01:CDS
GAATTGGGGAGACCAGTGCG+CGG 0.788727 4:+84503287 MsG0480023384.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATAGAAGAATAT+GGG + Chr4:84501604-84501623 MsG0480023384.01.T01:intron 10.0%
!! ATGTATGAGTTTAAAAAAAA+TGG - Chr4:84501983-84502002 MsG0480023386.01.T01:intron 15.0%
!! GAACAATATAATATAAATAC+TGG - Chr4:84503393-84503412 MsG0480023386.01.T01:five_prime_UTR 15.0%
!! GATTAATAAATAGAAGAATA+TGG + Chr4:84501605-84501624 MsG0480023384.01.T01:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG - Chr4:84501984-84502003 MsG0480023386.01.T01:intron 15.0%
!! TTAATAAATAGAAGAATATG+GGG + Chr4:84501603-84501622 MsG0480023384.01.T01:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG - Chr4:84502555-84502574 MsG0480023386.01.T01:CDS 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG - Chr4:84502556-84502575 MsG0480023386.01.T01:CDS 15.0%
!!! TTTTATTACAATCACATTAT+AGG - Chr4:84503274-84503293 MsG0480023386.01.T01:CDS 15.0%
!! AGGAAATAACAAAACATAAA+TGG + Chr4:84501810-84501829 MsG0480023384.01.T01:intron 20.0%
!! ATCAAATAATTTAATCACCT+TGG + Chr4:84502408-84502427 MsG0480023384.01.T01:intron 20.0%
!! CAAAATACTCCTATTAATTA+GGG + Chr4:84501774-84501793 MsG0480023384.01.T01:intron 20.0%
!! CAATATCTTCAAATGAATAT+GGG - Chr4:84502444-84502463 MsG0480023386.01.T01:CDS 20.0%
!! TCAAAATACTCCTATTAATT+AGG + Chr4:84501775-84501794 MsG0480023384.01.T01:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG + Chr4:84502596-84502615 MsG0480023384.01.T01:intron 20.0%
! AAAACCTTTGTATTCAATGA+TGG + Chr4:84502325-84502344 MsG0480023384.01.T01:intron 25.0%
! AATCATCATCATCATCAAAT+TGG - Chr4:84501331-84501350 MsG0480023386.01.T01:three_prime_UTR 25.0%
! AGACAATAGTTACAATACTA+AGG - Chr4:84503214-84503233 MsG0480023386.01.T01:CDS 25.0%
! ATCATCATCATCATCAAATT+GGG - Chr4:84501332-84501351 MsG0480023386.01.T01:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG + Chr4:84501664-84501683 MsG0480023384.01.T01:intron 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG - Chr4:84502222-84502241 MsG0480023386.01.T01:intron 25.0%
! CAATGATAATAAAAACTGAG+TGG - Chr4:84502623-84502642 MsG0480023386.01.T01:intron 25.0%
! CCAATATCTTCAAATGAATA+TGG - Chr4:84502443-84502462 MsG0480023386.01.T01:CDS 25.0%
! CCATATTCATTTGAAGATAT+TGG + Chr4:84502446-84502465 MsG0480023384.01.T01:intron 25.0%
! GCAAATGTTGAATAAATACA+TGG + Chr4:84502095-84502114 MsG0480023384.01.T01:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG + Chr4:84502472-84502491 MsG0480023384.01.T01:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG - Chr4:84502969-84502988 MsG0480023386.01.T01:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG + Chr4:84501979-84501998 MsG0480023384.01.T01:intron 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG - Chr4:84501782-84501801 MsG0480023386.01.T01:intron 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG - Chr4:84502883-84502902 MsG0480023386.01.T01:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG - Chr4:84502932-84502951 MsG0480023386.01.T01:intron 25.0%
ACAGATATGATAGTTAACAG+AGG + Chr4:84502711-84502730 MsG0480023384.01.T01:intron 30.0%
ATACTCCTATTAATTAGGGT+AGG + Chr4:84501770-84501789 MsG0480023384.01.T01:intron 30.0%
CAATACTTCGGAGTAATTAT+AGG - Chr4:84503250-84503269 MsG0480023386.01.T01:CDS 30.0%
GGGACAAAACAAAAACATAT+TGG - Chr4:84501352-84501371 MsG0480023386.01.T01:three_prime_UTR 30.0%
TCAATCACTTGAATAAGATG+AGG - Chr4:84502187-84502206 MsG0480023386.01.T01:intron 30.0%
TTCTCTACACAAATCAAACA+TGG - Chr4:84501398-84501417 MsG0480023386.01.T01:three_prime_UTR 30.0%
! GAATGTTTGAAGCAATACTT+CGG - Chr4:84503238-84503257 MsG0480023386.01.T01:CDS 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG - Chr4:84502330-84502349 MsG0480023386.01.T01:intron 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG - Chr4:84502234-84502253 MsG0480023386.01.T01:intron 30.0%
!! TTGTTATTTCCTATGAACCA+CGG - Chr4:84501818-84501837 MsG0480023386.01.T01:intron 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG - Chr4:84502943-84502962 MsG0480023386.01.T01:intron 30.0%
AAATGATTTACCACATCCAC+AGG + Chr4:84503167-84503186 MsG0480023384.01.T01:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG + Chr4:84502866-84502885 MsG0480023384.01.T01:intron 35.0%
ATCGAATTGAGAGAGGTTTA+GGG + Chr4:84501554-84501573 MsG0480023384.01.T01:intron 35.0%
ATTAATTAGGGTAGGCAAAG+CGG + Chr4:84501762-84501781 MsG0480023384.01.T01:intron 35.0%
CACAGCAAACAAACAGATAT+GGG + Chr4:84503338-84503357 MsG0480023384.01.T01:intron 35.0%
CTTTGCCTACCCTAATTAAT+AGG - Chr4:84501762-84501781 MsG0480023386.01.T01:intron 35.0%
GACTCCATCATTGAATACAA+AGG - Chr4:84502318-84502337 MsG0480023386.01.T01:intron 35.0%
GGGGTTATGCAGAAAAATTA+AGG + Chr4:84501741-84501760 MsG0480023384.01.T01:intron 35.0%
TCAAGACTTGATTGAAAGCT+TGG - Chr4:84502834-84502853 MsG0480023386.01.T01:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG + Chr4:84502162-84502181 MsG0480023384.01.T01:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG - Chr4:84501933-84501952 MsG0480023386.01.T01:intron 35.0%
! TCTTTACACTCAGATTAGTC+AGG - Chr4:84501932-84501951 MsG0480023386.01.T01:intron 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG - Chr4:84502508-84502527 MsG0480023386.01.T01:CDS 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG - Chr4:84502507-84502526 MsG0480023386.01.T01:CDS 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG - Chr4:84502381-84502400 MsG0480023386.01.T01:intron 35.0%
!! GTCATACACAATGGATTTTG+AGG - Chr4:84502272-84502291 MsG0480023386.01.T01:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG - Chr4:84502942-84502961 MsG0480023386.01.T01:intron 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG - Chr4:84502899-84502918 MsG0480023386.01.T01:intron 35.0%
AACTGAAGAAGATAACGTGG+AGG + Chr4:84502863-84502882 MsG0480023384.01.T01:intron 40.0%
AAGAGCCTACTCTTCGTATT+TGG - Chr4:84503070-84503089 MsG0480023386.01.T01:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG + Chr4:84503070-84503089 MsG0480023384.01.T01:intron 40.0%
ACAATAAACTGATGCACCAC+AGG + Chr4:84503362-84503381 MsG0480023384.01.T01:intron 40.0%
ACACAAATCAAACATGGCCA+TGG - Chr4:84501404-84501423 MsG0480023386.01.T01:three_prime_UTR 40.0%
ATTCCTGCTTAACAAAGTGC+TGG + Chr4:84502800-84502819 MsG0480023384.01.T01:intron 40.0%
CCACAGCAAACAAACAGATA+TGG + Chr4:84503339-84503358 MsG0480023384.01.T01:intron 40.0%
CTCTGGTATGTCATACACAA+TGG - Chr4:84502263-84502282 MsG0480023386.01.T01:intron 40.0%
GAAAGTGATCGAATTGAGAG+AGG + Chr4:84501561-84501580 MsG0480023384.01.T01:intron 40.0%
GAGATAAGAAATCACCCATG+TGG + Chr4:84501851-84501870 MsG0480023384.01.T01:intron 40.0%
GATCGAATTGAGAGAGGTTT+AGG + Chr4:84501555-84501574 MsG0480023384.01.T01:intron 40.0%
GCATTCCAAATACGAAGAGT+AGG + Chr4:84503078-84503097 MsG0480023384.01.T01:intron 40.0%
TAAGCTTGGCAAACGAAAGA+AGG - Chr4:84502983-84503002 MsG0480023386.01.T01:intron 40.0%
TAGAAGAATATGGGGCTTAC+CGG + Chr4:84501595-84501614 MsG0480023384.01.T01:intron 40.0%
TTAATTAGGGTAGGCAAAGC+GGG + Chr4:84501761-84501780 MsG0480023384.01.T01:intron 40.0%
! CCATATCTGTTTGTTTGCTG+TGG - Chr4:84503336-84503355 MsG0480023386.01.T01:exon 40.0%
! TATTCAATGATGGAGTCGTC+TGG + Chr4:84502315-84502334 MsG0480023384.01.T01:intron 40.0%
!! ACACAATGGATTTTGAGGAC+AGG - Chr4:84502277-84502296 MsG0480023386.01.T01:intron 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG - Chr4:84502237-84502256 MsG0480023386.01.T01:intron 40.0%
!! CACAATGGATTTTGAGGACA+GGG - Chr4:84502278-84502297 MsG0480023386.01.T01:intron 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG - Chr4:84502238-84502257 MsG0480023386.01.T01:intron 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG - Chr4:84502526-84502545 MsG0480023386.01.T01:CDS 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG - Chr4:84502527-84502546 MsG0480023386.01.T01:CDS 40.0%
AAATCAAACATGGCCATGGC+TGG - Chr4:84501408-84501427 MsG0480023386.01.T01:three_prime_UTR 45.0%
AATACATGGTCGAGACAGAC+AGG + Chr4:84502081-84502100 MsG0480023384.01.T01:intron 45.0%
ATACATGGTCGAGACAGACA+GGG + Chr4:84502080-84502099 MsG0480023384.01.T01:intron 45.0%
ATTGGAACGCGAACGAATTG+GGG + Chr4:84501474-84501493 MsG0480023384.01.T01:intron 45.0%
CAAACCTAGCAGCAAGTACT+GGG + Chr4:84501700-84501719 MsG0480023384.01.T01:intron 45.0%
CTAAAGCGGCGATTGAGAAT+TGG + Chr4:84501531-84501550 MsG0480023384.01.T01:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG - Chr4:84503103-84503122 MsG0480023386.01.T01:intron 45.0%
GAGAGAGAGCTATGAGTGAT+TGG + Chr4:84501492-84501511 MsG0480023384.01.T01:intron 45.0%
GATTGGAACGCGAACGAATT+GGG + Chr4:84501475-84501494 MsG0480023384.01.T01:intron 45.0%
TAATTAGGGTAGGCAAAGCG+GGG + Chr4:84501760-84501779 MsG0480023384.01.T01:intron 45.0%
TACAGTGATGCTCTGATTGG+AGG - Chr4:84503106-84503125 MsG0480023386.01.T01:intron 45.0%
TCACTTTCCGTTATTGCTGC+CGG - Chr4:84501573-84501592 MsG0480023386.01.T01:CDS 45.0%
TGATTGGAACGCGAACGAAT+TGG + Chr4:84501476-84501495 MsG0480023384.01.T01:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG + Chr4:84502388-84502407 MsG0480023384.01.T01:intron 45.0%
! AAACCTAGCAGCAAGTACTG+GGG + Chr4:84501699-84501718 MsG0480023384.01.T01:intron 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG + Chr4:84501545-84501564 MsG0480023384.01.T01:intron 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG - Chr4:84502388-84502407 MsG0480023386.01.T01:intron 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG - Chr4:84501950-84501969 MsG0480023386.01.T01:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG - Chr4:84502902-84502921 MsG0480023386.01.T01:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG - Chr4:84502127-84502146 MsG0480023386.01.T01:intron 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG - Chr4:84502126-84502145 MsG0480023386.01.T01:intron 45.0%
AAGCGAAATTGCAGGTGCCA+CGG + Chr4:84502154-84502173 MsG0480023384.01.T01:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG - Chr4:84503109-84503128 MsG0480023386.01.T01:intron 50.0%
CAATTACTACTACCGCGCAC+TGG - Chr4:84501445-84501464 MsG0480023386.01.T01:three_prime_UTR 50.0%
CCAAACCTAGCAGCAAGTAC+TGG + Chr4:84501701-84501720 MsG0480023384.01.T01:intron 50.0%
CCACAGGTTTGTGTCGCATT+AGG + Chr4:84503151-84503170 MsG0480023384.01.T01:intron 50.0%
CCTAATGCGACACAAACCTG+TGG - Chr4:84503148-84503167 MsG0480023386.01.T01:intron 50.0%
CTGCCAGCACTTTGTTAAGC+AGG - Chr4:84502794-84502813 MsG0480023386.01.T01:intron 50.0%
TACATGGTCGAGACAGACAG+GGG + Chr4:84502079-84502098 MsG0480023384.01.T01:intron 50.0%
TTGAGGACAGGGCTAATGCA+AGG - Chr4:84502289-84502308 MsG0480023386.01.T01:intron 50.0%
TTTAGCTGCACCTGCATCTG+GGG - Chr4:84502128-84502147 MsG0480023386.01.T01:intron 50.0%
! CCAGTACTTGCTGCTAGGTT+TGG - Chr4:84501698-84501717 MsG0480023386.01.T01:intron 50.0%
! GGGAGTGCAACAAAGCACTT+CGG - Chr4:84502004-84502023 MsG0480023386.01.T01:intron 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG - Chr4:84503343-84503362 MsG0480023386.01.T01:exon 50.0%
AACCACGGACACATGCCACA+TGG - Chr4:84501833-84501852 MsG0480023386.01.T01:intron 55.0%
ACCACGGACACATGCCACAT+GGG - Chr4:84501834-84501853 MsG0480023386.01.T01:intron 55.0%
AGAGAAAGCAGCACCAGCCA+TGG + Chr4:84501424-84501443 MsG0480023384.01.T01:intron 55.0%
GCGACACAAACCTGTGGATG+TGG - Chr4:84503154-84503173 MsG0480023386.01.T01:intron 55.0%
GGCATGTGTCCGTGGTTCAT+AGG + Chr4:84501830-84501849 MsG0480023384.01.T01:intron 55.0%
GGGCTTACCGGCAGCAATAA+CGG + Chr4:84501583-84501602 MsG0480023384.01.T01:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG - Chr4:84502246-84502265 MsG0480023386.01.T01:intron 55.0%
! AGACCCCAGTACTTGCTGCT+AGG - Chr4:84501693-84501712 MsG0480023386.01.T01:intron 55.0%
ACCCATGTGGCATGTGTCCG+TGG + Chr4:84501838-84501857 MsG0480023384.01.T01:intron 60.0%
GAATTGGGGAGACCAGTGCG+CGG + Chr4:84501460-84501479 MsG0480023384.01.T01:intron 60.0%
! TGCACCTGCATCTGGGGCCG+TGG - Chr4:84502134-84502153 MsG0480023386.01.T01:intron 70.0%
! GGTGCCACGGCCCCAGATGC+AGG + Chr4:84502141-84502160 MsG0480023384.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84501312 84503454 84501312 ID=MsG0480023386.01;Name=MsG0480023386.01
Chr4 mRNA 84501312 84503454 84501312 ID=MsG0480023386.01.T01;Parent=MsG0480023386.01;Name=MsG0480023386.01.T01;_AED=0.30;_eAED=0.30;_QI=105|1|1|1|1|1|3|253|179
Chr4 exon 84501312 84501707 84501312 ID=MsG0480023386.01.T01:exon:2771;Parent=MsG0480023386.01.T01
Chr4 exon 84502415 84502633 84502415 ID=MsG0480023386.01.T01:exon:2770;Parent=MsG0480023386.01.T01
Chr4 exon 84503172 84503454 84503172 ID=MsG0480023386.01.T01:exon:2769;Parent=MsG0480023386.01.T01
Chr4 five_prime_UTR 84503350 84503454 84503350 ID=MsG0480023386.01.T01:five_prime_utr;Parent=MsG0480023386.01.T01
Chr4 CDS 84503172 84503349 84503172 ID=MsG0480023386.01.T01:cds;Parent=MsG0480023386.01.T01
Chr4 CDS 84502415 84502633 84502415 ID=MsG0480023386.01.T01:cds;Parent=MsG0480023386.01.T01
Chr4 CDS 84501565 84501707 84501565 ID=MsG0480023386.01.T01:cds;Parent=MsG0480023386.01.T01
Chr4 three_prime_UTR 84501312 84501564 84501312 ID=MsG0480023386.01.T01:three_prime_utr;Parent=MsG0480023386.01.T01
Gene Sequence

>MsG0480023386.01.T01

ATGGCCATGGCTGGTGCTGCTTTCTCTACAATTACTACTACCGCGCACTGGTCTCCCCAATTCGTTCGCGTTCCAATCACTCATAGCTCTCTCTCTTTTCGATTTTCAACTCCAATTCTCAATCGCCGCTTTAGCCCTAAACCTCTCTCAATTCGATCACTTTCCGTTATTGCTGCCGCTGCACCTGCATCTGGGGCCGTGGCACCTGCAATTTCGCTTACAGATAATGCACTCAATCACTTGAATAAGATGAGGTCTGAACGAAGTCAAGATTTGTGTTTAAGAATTGGTGTCAAACAAGGTGGGTGCTCTGGTATGTCATACACAATGGATTTTGAGGACAGGGCTAATGCAAGGCCAGACGACTCCATCATTGAATACAAAGGTTTTGTCATTGTTTGTGATCCTAAGAGCCTACTCTTCGTATTTGGAATGCAATTAGACTACAGTGATGCTCTGATTGGAGGAGGCTTCAATTTCAAGAATCCTAATGCGACACAAACCTGTGGATGTGGTAAATCATTTAATGCAGAAATGTAA

Protein sequence

>MsG0480023386.01.T01

MAMAGAAFSTITTTAHWSPQFVRVPITHSSLSFRFSTPILNRRFSPKPLSIRSLSVIAAAAPASGAVAPAISLTDNALNHLNKMRSERSQDLCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYKGFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM*