Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022400.01.T01 | XP_013457050.1 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.19E-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022400.01.T01 | Q338B0 | 38.073 | 218 | 111 | 6 | 2 | 202 | 6 | 216 | 8.34E-38 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022400.01.T01 | G7ZZ89 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 1.05e-147 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0480022400.01 | 0.811816 | 5.793304e-51 | 3.622063e-48 |
| MsG0080048347.01 | MsG0480022400.01 | 0.815041 | 1.132898e-51 | 7.726304e-49 |
| MsG0080048352.01 | MsG0480022400.01 | 0.822373 | 2.452059e-53 | 2.048764e-50 |
| MsG0180002981.01 | MsG0480022400.01 | 0.814291 | 1.660310e-51 | 1.109656e-48 |
| MsG0180004941.01 | MsG0480022400.01 | 0.806295 | 8.817970e-50 | 4.768729e-47 |
| MsG0180005328.01 | MsG0480022400.01 | 0.826028 | 3.395482e-54 | 3.147444e-51 |
| MsG0180005356.01 | MsG0480022400.01 | 0.829974 | 3.811018e-55 | 3.961788e-52 |
| MsG0180005357.01 | MsG0480022400.01 | 0.821661 | 3.585586e-53 | 2.935400e-50 |
| MsG0180005358.01 | MsG0480022400.01 | 0.824081 | 9.791966e-54 | 8.585504e-51 |
| MsG0180005648.01 | MsG0480022400.01 | 0.803976 | 2.696198e-49 | 1.373800e-46 |
| MsG0280011165.01 | MsG0480022400.01 | 0.830803 | 2.391026e-55 | 2.546377e-52 |
| MsG0280011193.01 | MsG0480022400.01 | 0.821197 | 4.587850e-53 | 3.707893e-50 |
| MsG0280011203.01 | MsG0480022400.01 | 0.812362 | 4.405788e-51 | 2.795614e-48 |
| MsG0380011613.01 | MsG0480022400.01 | 0.807587 | 4.700276e-50 | 2.627956e-47 |
| MsG0380013300.01 | MsG0480022400.01 | 0.824788 | 6.676205e-54 | 5.973936e-51 |
| MsG0380013449.01 | MsG0480022400.01 | 0.801891 | 7.270932e-49 | 3.512520e-46 |
| MsG0380013452.01 | MsG0480022400.01 | 0.805647 | 1.206575e-49 | 6.417875e-47 |
| MsG0480019726.01 | MsG0480022400.01 | 0.802755 | 4.826959e-49 | 2.383697e-46 |
| MsG0480021131.01 | MsG0480022400.01 | 0.821904 | 3.151167e-53 | 2.597643e-50 |
| MsG0480022125.01 | MsG0480022400.01 | 0.836687 | 8.088040e-57 | 1.026923e-53 |
| MsG0480022400.01 | MsG0480022655.01 | 0.825086 | 5.677824e-54 | 5.123968e-51 |
| MsG0480022400.01 | MsG0480023107.01 | 0.833147 | 6.302770e-56 | 7.195884e-53 |
| MsG0480022400.01 | MsG0580024218.01 | 0.814669 | 1.369378e-51 | 9.245727e-49 |
| MsG0480022400.01 | MsG0580024408.01 | 0.815138 | 1.078046e-51 | 7.371170e-49 |
| MsG0480022400.01 | MsG0580028999.01 | 0.824971 | 6.044984e-54 | 5.437447e-51 |
| MsG0480022400.01 | MsG0580030133.01 | 0.832895 | 7.281669e-56 | 8.250438e-53 |
| MsG0480022400.01 | MsG0680030545.01 | 0.822475 | 2.322681e-53 | 1.946188e-50 |
| MsG0480022400.01 | MsG0680030960.01 | 0.806360 | 8.542860e-50 | 4.627494e-47 |
| MsG0480022400.01 | MsG0680030961.01 | 0.818002 | 2.459506e-52 | 1.819089e-49 |
| MsG0480022400.01 | MsG0780036661.01 | 0.820251 | 7.571736e-53 | 5.960133e-50 |
| MsG0480022400.01 | MsG0780037182.01 | 0.808814 | 2.574508e-50 | 1.486542e-47 |
| MsG0480022400.01 | MsG0780038939.01 | 0.827578 | 1.448125e-54 | 1.403596e-51 |
| MsG0480022400.01 | MsG0780039839.01 | -0.801732 | 7.837606e-49 | 3.770736e-46 |
| MsG0480022400.01 | MsG0780039978.01 | 0.811241 | 7.725781e-51 | 4.757439e-48 |
| MsG0480022400.01 | MsG0780040806.01 | 0.801522 | 8.654223e-49 | 4.141722e-46 |
| MsG0480022400.01 | MsG0780041198.01 | 0.822701 | 2.057357e-53 | 1.735017e-50 |
| MsG0480022400.01 | MsG0780041316.01 | 0.810978 | 8.810679e-51 | 5.388634e-48 |
| MsG0480022400.01 | MsG0780041556.01 | 0.832824 | 7.584204e-56 | 8.574801e-53 |
| MsG0480022400.01 | MsG0880042740.01 | 0.802314 | 5.950997e-49 | 2.906069e-46 |
| MsG0480022400.01 | MsG0880043828.01 | 0.817603 | 3.026588e-52 | 2.214075e-49 |
| MsG0480022400.01 | MsG0880045677.01 | 0.837099 | 6.346270e-57 | 8.158143e-54 |
| MsG0480022400.01 | MsG0880046176.01 | 0.812218 | 4.736181e-51 | 2.993668e-48 |
| MsG0480022400.01 | MsG0880046308.01 | 0.805386 | 1.368920e-49 | 7.232438e-47 |
| MsG0480022400.01 | MsG0880046429.01 | 0.801005 | 1.104229e-48 | 5.216545e-46 |
| MsG0480022400.01 | MsG0880046996.01 | 0.828140 | 1.060840e-54 | 1.045347e-51 |
| MsG0480022400.01 | MsG0880047486.01 | 0.802326 | 5.915621e-49 | 2.889692e-46 |
| MsG0380017405.01 | MsG0480022400.01 | -0.802898 | 4.508286e-49 | 2.234475e-46 |
| MsG0380017754.01 | MsG0480022400.01 | 0.814003 | 1.921569e-51 | 1.274258e-48 |
| MsG0380018051.01 | MsG0480022400.01 | 0.809797 | 1.584055e-50 | 9.389881e-48 |
| MsG0280006883.01 | MsG0480022400.01 | 0.847088 | 1.442754e-59 | 2.536027e-56 |
| MsG0280007216.01 | MsG0480022400.01 | 0.803274 | 3.769007e-49 | 1.886043e-46 |
| MsG0280008405.01 | MsG0480022400.01 | 0.835377 | 1.738758e-56 | 2.122479e-53 |
| MsG0280009394.01 | MsG0480022400.01 | 0.800818 | 1.205557e-48 | 5.667706e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022400.01.T01 | MTR_4g088900 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.66e-151 | 418 |
| MsG0480022400.01.T01 | MTR_5g010680 | 38.424 | 203 | 87 | 4 | 30 | 199 | 21 | 218 | 2.74e-40 | 141 |
| MsG0480022400.01.T01 | MTR_7g091370 | 44.886 | 176 | 76 | 4 | 31 | 199 | 20 | 181 | 2.81e-40 | 137 |
| MsG0480022400.01.T01 | MTR_1g100777 | 37.073 | 205 | 102 | 4 | 17 | 203 | 4 | 199 | 2.49e-37 | 132 |
| MsG0480022400.01.T01 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 30 | 195 | 3.45e-36 | 130 |
| MsG0480022400.01.T01 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 27 | 192 | 4.30e-36 | 130 |
| MsG0480022400.01.T01 | MTR_5g089170 | 39.106 | 179 | 96 | 3 | 30 | 200 | 22 | 195 | 7.40e-36 | 127 |
| MsG0480022400.01.T01 | MTR_3g101870 | 35.814 | 215 | 89 | 3 | 30 | 200 | 21 | 230 | 6.82e-35 | 127 |
| MsG0480022400.01.T01 | MTR_0020s0020 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 1.02e-34 | 126 |
| MsG0480022400.01.T01 | MTR_6g043060 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 2.43e-34 | 124 |
| MsG0480022400.01.T01 | MTR_1g102860 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 6.20e-34 | 124 |
| MsG0480022400.01.T01 | MTR_5g029680 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 1.95e-33 | 125 |
| MsG0480022400.01.T01 | MTR_5g017470 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 2.53e-33 | 121 |
| MsG0480022400.01.T01 | MTR_1g061170 | 39.444 | 180 | 97 | 5 | 2 | 175 | 14 | 187 | 1.86e-32 | 122 |
| MsG0480022400.01.T01 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 31 | 193 | 1.88e-32 | 119 |
| MsG0480022400.01.T01 | MTR_7g095680 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 5.30e-32 | 119 |
| MsG0480022400.01.T01 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 139 | 301 | 8.07e-32 | 119 |
| MsG0480022400.01.T01 | MTR_2g100680 | 52.525 | 99 | 42 | 1 | 31 | 129 | 29 | 122 | 1.43e-31 | 119 |
| MsG0480022400.01.T01 | MTR_4g077970 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 3.33e-31 | 119 |
| MsG0480022400.01.T01 | MTR_8g083100 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 7.68e-31 | 118 |
| MsG0480022400.01.T01 | MTR_3g104550 | 38.953 | 172 | 94 | 4 | 31 | 199 | 44 | 207 | 3.85e-30 | 114 |
| MsG0480022400.01.T01 | MTR_8g087540 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 5.38e-30 | 114 |
| MsG0480022400.01.T01 | MTR_2g017890 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 1.43e-27 | 107 |
| MsG0480022400.01.T01 | MTR_6g086805 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 2.12e-27 | 106 |
| MsG0480022400.01.T01 | MTR_8g105780 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 1.33e-26 | 105 |
| MsG0480022400.01.T01 | MTR_4g045757 | 50.704 | 71 | 29 | 2 | 33 | 102 | 14 | 79 | 5.26e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022400.01.T01 | AT5G62020 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 3.98e-37 | 131 |
| MsG0480022400.01.T01 | AT4G36990 | 37.264 | 212 | 100 | 5 | 22 | 211 | 3 | 203 | 1.77e-36 | 129 |
| MsG0480022400.01.T01 | AT2G41690 | 38.462 | 195 | 99 | 4 | 21 | 199 | 28 | 217 | 1.75e-35 | 125 |
| MsG0480022400.01.T01 | AT4G17750 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 9.41e-35 | 129 |
| MsG0480022400.01.T01 | AT1G46264 | 49.153 | 118 | 55 | 1 | 30 | 147 | 31 | 143 | 3.02e-34 | 125 |
| MsG0480022400.01.T01 | AT4G11660 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 1.80e-33 | 123 |
| MsG0480022400.01.T01 | AT4G13980 | 38.122 | 181 | 89 | 3 | 34 | 211 | 24 | 184 | 2.79e-33 | 124 |
| MsG0480022400.01.T01 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.71e-33 | 122 |
| MsG0480022400.01.T01 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.71e-33 | 122 |
| MsG0480022400.01.T01 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.37e-33 | 123 |
| MsG0480022400.01.T01 | AT5G43840 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 8.39e-33 | 119 |
| MsG0480022400.01.T01 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.72e-33 | 123 |
| MsG0480022400.01.T01 | AT3G22830 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.52e-32 | 121 |
| MsG0480022400.01.T01 | AT3G63350 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 7.45e-32 | 117 |
| MsG0480022400.01.T01 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.31e-32 | 120 |
| MsG0480022400.01.T01 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.31e-32 | 120 |
| MsG0480022400.01.T01 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.14e-31 | 117 |
| MsG0480022400.01.T01 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.14e-31 | 117 |
| MsG0480022400.01.T01 | AT3G51910 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.45e-30 | 113 |
| MsG0480022400.01.T01 | AT3G02990 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 7.35e-29 | 112 |
| MsG0480022400.01.T01 | AT3G24520 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.38e-28 | 109 |
| MsG0480022400.01.T01 | AT5G54070 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 2.00e-28 | 109 |
| MsG0480022400.01.T01 | AT4G18880 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 1.19e-25 | 102 |
| MsG0480022400.01.T01 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.36e-25 | 100 |
| MsG0480022400.01.T01 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.36e-25 | 100 |
| MsG0480022400.01.T01 | AT1G67970 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 4.54e-24 | 98.2 |
| MsG0480022400.01.T01 | AT4G18870 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 9.16e-15 | 71.6 |
| MsG0480022400.01.T01 | AT4G18870 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 2.17e-12 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4:-72055681 | None:intergenic |
| TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4:-72054273 | None:intergenic |
| ACTCTAACCTTTCCTTCTTT+AGG | 0.284218 | 4:-72055582 | None:intergenic |
| AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4:-72054117 | None:intergenic |
| TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4:+72054140 | MsG0480022400.01.T01:CDS |
| AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4:+72055407 | MsG0480022400.01.T01:CDS |
| GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4:+72054103 | MsG0480022400.01.T01:CDS |
| CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4:+72055399 | MsG0480022400.01.T01:CDS |
| CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4:-72054110 | None:intergenic |
| AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4:+72055371 | MsG0480022400.01.T01:CDS |
| TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4:-72054135 | None:intergenic |
| ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4:+72055674 | MsG0480022400.01.T01:CDS |
| GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4:+72055630 | MsG0480022400.01.T01:CDS |
| GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4:+72055651 | MsG0480022400.01.T01:CDS |
| GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4:-72055478 | None:intergenic |
| CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4:+72055400 | MsG0480022400.01.T01:CDS |
| ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4:+72054143 | MsG0480022400.01.T01:CDS |
| GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4:-72054129 | None:intergenic |
| ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4:-72054151 | None:intergenic |
| GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4:+72055372 | MsG0480022400.01.T01:CDS |
| TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4:+72054207 | MsG0480022400.01.T01:CDS |
| AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4:-72054109 | None:intergenic |
| AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4:-72055466 | None:intergenic |
| TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4:+72055546 | MsG0480022400.01.T01:CDS |
| GTGAGCTCTGAGAATTCAGC+TGG | 0.540598 | 4:-72054246 | None:intergenic |
| AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4:+72055417 | MsG0480022400.01.T01:CDS |
| ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4:+72054201 | MsG0480022400.01.T01:CDS |
| GGAGAACAAGAACCTAAAGA+AGG | 0.568844 | 4:+72055570 | MsG0480022400.01.T01:CDS |
| ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4:+72054150 | MsG0480022400.01.T01:CDS |
| GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4:+72054171 | MsG0480022400.01.T01:CDS |
| AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4:+72054048 | MsG0480022400.01.T01:CDS |
| ACAAGAACCTAAAGAAGGAA+AGG | 0.583280 | 4:+72055575 | MsG0480022400.01.T01:CDS |
| ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4:+72054190 | MsG0480022400.01.T01:CDS |
| AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4:+72055609 | MsG0480022400.01.T01:CDS |
| TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4:+72054035 | None:intergenic |
| GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4:-72054268 | None:intergenic |
| ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4:+72055431 | MsG0480022400.01.T01:CDS |
| ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4:+72055483 | MsG0480022400.01.T01:CDS |
| TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4:+72054159 | MsG0480022400.01.T01:CDS |
| TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4:-72054128 | None:intergenic |
| CAATCATGAACTACTCATGG+AGG | 0.704767 | 4:+72055549 | MsG0480022400.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | Chr4:72054531-72054550 | None:intergenic | 15.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | Chr4:72054707-72054726 | MsG0480022400.01.T01:intron | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | Chr4:72055343-72055362 | MsG0480022400.01.T01:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | Chr4:72055371-72055390 | MsG0480022400.01.T01:CDS | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | Chr4:72054451-72054470 | None:intergenic | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | Chr4:72055372-72055391 | MsG0480022400.01.T01:CDS | 20.0% |
| !!! | AAAAGACCAAATTTGAAATT+TGG | + | Chr4:72054850-72054869 | MsG0480022400.01.T01:intron | 20.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | Chr4:72054411-72054430 | MsG0480022400.01.T01:intron | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | Chr4:72054607-72054626 | MsG0480022400.01.T01:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | Chr4:72054568-72054587 | None:intergenic | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | Chr4:72054608-72054627 | MsG0480022400.01.T01:intron | 20.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | Chr4:72054708-72054727 | MsG0480022400.01.T01:intron | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | Chr4:72055029-72055048 | MsG0480022400.01.T01:intron | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | Chr4:72054488-72054507 | None:intergenic | 25.0% |
| ! | ATGCATATATTAACACAACA+TGG | + | Chr4:72055268-72055287 | MsG0480022400.01.T01:intron | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | Chr4:72054706-72054725 | MsG0480022400.01.T01:intron | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | Chr4:72055342-72055361 | MsG0480022400.01.T01:intron | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | Chr4:72054662-72054681 | None:intergenic | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | Chr4:72055344-72055363 | MsG0480022400.01.T01:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | Chr4:72055099-72055118 | MsG0480022400.01.T01:intron | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | Chr4:72054276-72054295 | None:intergenic | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | Chr4:72054706-72054725 | None:intergenic | 25.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | Chr4:72054081-72054100 | MsG0480022400.01.T01:CDS | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | Chr4:72055684-72055703 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | Chr4:72054558-72054577 | None:intergenic | 25.0% |
| !!! | CATTTTGATCAGAAGAAAAT+TGG | - | Chr4:72054083-72054102 | None:intergenic | 25.0% |
| AAGTTCTTTGAATTACTTGG+GGG | + | Chr4:72054709-72054728 | MsG0480022400.01.T01:intron | 30.0% | |
| ATAACCGCCAAAATAAAGTT+AGG | + | Chr4:72055674-72055693 | MsG0480022400.01.T01:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | Chr4:72054190-72054209 | MsG0480022400.01.T01:CDS | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | Chr4:72055400-72055419 | MsG0480022400.01.T01:CDS | 30.0% | |
| GATGGTCCAAATTTCAAATT+TGG | - | Chr4:72054859-72054878 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | Chr4:72054641-72054660 | None:intergenic | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | Chr4:72054138-72054157 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | Chr4:72054140-72054159 | MsG0480022400.01.T01:CDS | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | Chr4:72055107-72055126 | MsG0480022400.01.T01:intron | 30.0% | |
| TTTAACGTTATACTGGTACT+TGG | + | Chr4:72055106-72055125 | MsG0480022400.01.T01:intron | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | Chr4:72054343-72054362 | None:intergenic | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | Chr4:72054877-72054896 | None:intergenic | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | Chr4:72055431-72055450 | MsG0480022400.01.T01:CDS | 30.0% |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | Chr4:72054881-72054900 | None:intergenic | 30.0% |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | Chr4:72054660-72054679 | MsG0480022400.01.T01:intron | 30.0% |
| AAAGAGCTACTGCAAAGTAA+TGG | - | Chr4:72054941-72054960 | None:intergenic | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | Chr4:72054891-72054910 | MsG0480022400.01.T01:intron | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | Chr4:72055609-72055628 | MsG0480022400.01.T01:CDS | 35.0% | |
| AATTCATGCAGTCAAGACAT+CGG | + | Chr4:72054761-72054780 | MsG0480022400.01.T01:intron | 35.0% | |
| ACAAGAACCTAAAGAAGGAA+AGG | + | Chr4:72055575-72055594 | MsG0480022400.01.T01:CDS | 35.0% | |
| ACTCTAACCTTTCCTTCTTT+AGG | - | Chr4:72055585-72055604 | None:intergenic | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | Chr4:72055407-72055426 | MsG0480022400.01.T01:CDS | 35.0% | |
| ATTACTTTGCAGTAGCTCTT+TGG | + | Chr4:72054940-72054959 | MsG0480022400.01.T01:intron | 35.0% | |
| ATTGTGTCATGGAATGAAGA+AGG | + | Chr4:72054201-72054220 | MsG0480022400.01.T01:CDS | 35.0% | |
| CCAGCATGAGAAATTTCAAA+AGG | + | Chr4:72055399-72055418 | MsG0480022400.01.T01:CDS | 35.0% | |
| CGTGCACAAAATGAAGAATT+TGG | + | Chr4:72055003-72055022 | MsG0480022400.01.T01:intron | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | Chr4:72055481-72055500 | None:intergenic | 35.0% | |
| GTGCTTGAAATATTTAGGCA+AGG | - | Chr4:72054271-72054290 | None:intergenic | 35.0% | |
| TAGCAATCATGAACTACTCA+TGG | + | Chr4:72055546-72055565 | MsG0480022400.01.T01:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | Chr4:72054207-72054226 | MsG0480022400.01.T01:CDS | 35.0% | |
| TCTTCAATAGAAATGGTGCA+GGG | - | Chr4:72054131-72054150 | None:intergenic | 35.0% | |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | Chr4:72054048-72054067 | MsG0480022400.01.T01:CDS | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | Chr4:72055003-72055022 | None:intergenic | 35.0% |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | Chr4:72055002-72055021 | None:intergenic | 35.0% |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | Chr4:72054143-72054162 | MsG0480022400.01.T01:CDS | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | Chr4:72054698-72054717 | None:intergenic | 35.0% |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | Chr4:72054697-72054716 | None:intergenic | 35.0% |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | Chr4:72055483-72055502 | MsG0480022400.01.T01:CDS | 35.0% |
| !! | CTACTGCAAAGTAATGGATT+TGG | - | Chr4:72054935-72054954 | None:intergenic | 35.0% |
| !! | TGTACGACGATATTGACTTT+GGG | - | Chr4:72055075-72055094 | None:intergenic | 35.0% |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | Chr4:72054220-72054239 | MsG0480022400.01.T01:CDS | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | Chr4:72055402-72055421 | None:intergenic | 35.0% |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | Chr4:72055681-72055700 | None:intergenic | 35.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | Chr4:72054154-72054173 | None:intergenic | 40.0% | |
| AGATATTGAGGAAACACGCT+TGG | - | Chr4:72055469-72055488 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | Chr4:72055549-72055568 | MsG0480022400.01.T01:CDS | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | Chr4:72054480-72054499 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | Chr4:72054477-72054496 | MsG0480022400.01.T01:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | Chr4:72054714-72054733 | MsG0480022400.01.T01:intron | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | Chr4:72054339-72054358 | None:intergenic | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | Chr4:72055570-72055589 | MsG0480022400.01.T01:CDS | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | Chr4:72055630-72055649 | MsG0480022400.01.T01:CDS | 40.0% | |
| GTCTTCAATAGAAATGGTGC+AGG | - | Chr4:72054132-72054151 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | Chr4:72054150-72054169 | MsG0480022400.01.T01:CDS | 40.0% |
| !! | AGTAATGGATTTGGATCTGC+TGG | - | Chr4:72054926-72054945 | None:intergenic | 40.0% |
| !! | GTAATGGATTTGGATCTGCT+GGG | - | Chr4:72054925-72054944 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | Chr4:72055076-72055095 | None:intergenic | 40.0% |
| AAAGGGTTGCAGGCATATGT+TGG | + | Chr4:72055417-72055436 | MsG0480022400.01.T01:CDS | 45.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | Chr4:72054103-72054122 | MsG0480022400.01.T01:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | Chr4:72054171-72054190 | MsG0480022400.01.T01:CDS | 45.0% | |
| GTCTTGACTGCATGAATTCG+TGG | - | Chr4:72054759-72054778 | None:intergenic | 45.0% | |
| TTGGTGGAACAAGGTAGTGA+AGG | + | Chr4:72054159-72054178 | MsG0480022400.01.T01:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | Chr4:72054112-72054131 | None:intergenic | 45.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | Chr4:72054120-72054139 | None:intergenic | 50.0% |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | Chr4:72054113-72054132 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | Chr4:72054999-72055018 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | Chr4:72055651-72055670 | MsG0480022400.01.T01:CDS | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | Chr4:72054249-72054268 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 72054039 | 72055708 | 72054039 | ID=MsG0480022400.01;Name=MsG0480022400.01 |
| Chr4 | mRNA | 72054039 | 72055708 | 72054039 | ID=MsG0480022400.01.T01;Parent=MsG0480022400.01;Name=MsG0480022400.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|2|0|211 |
| Chr4 | exon | 72054039 | 72054329 | 72054039 | ID=MsG0480022400.01.T01:exon:4952;Parent=MsG0480022400.01.T01 |
| Chr4 | exon | 72055364 | 72055708 | 72055364 | ID=MsG0480022400.01.T01:exon:4953;Parent=MsG0480022400.01.T01 |
| Chr4 | CDS | 72054039 | 72054329 | 72054039 | ID=MsG0480022400.01.T01:cds;Parent=MsG0480022400.01.T01 |
| Chr4 | CDS | 72055364 | 72055708 | 72055364 | ID=MsG0480022400.01.T01:cds;Parent=MsG0480022400.01.T01 |
| Gene Sequence |
| Protein sequence |
