Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039622.01.T01 | XP_003623838.1 | 96.25 | 80 | 3 | 0 | 10 | 89 | 147 | 226 | 1.10E-45 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039622.01.T01 | Q9LQ73 | 72.5 | 80 | 22 | 0 | 10 | 89 | 147 | 226 | 1.76E-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039622.01.T01 | A2Q5C8 | 96.250 | 80 | 3 | 0 | 10 | 89 | 147 | 226 | 5.27e-46 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0780039622.01 | -0.818001 | 2.461497e-52 | 1.820481e-49 |
| MsG0180000360.01 | MsG0780039622.01 | -0.829755 | 4.309284e-55 | 4.451984e-52 |
| MsG0180000479.01 | MsG0780039622.01 | -0.814470 | 1.515388e-51 | 1.017759e-48 |
| MsG0180001294.01 | MsG0780039622.01 | -0.802066 | 6.690908e-49 | 3.246622e-46 |
| MsG0180001565.01 | MsG0780039622.01 | -0.835228 | 1.896247e-56 | 2.304487e-53 |
| MsG0180003073.01 | MsG0780039622.01 | -0.809882 | 1.518598e-50 | 9.021614e-48 |
| MsG0180003281.01 | MsG0780039622.01 | -0.800123 | 1.670609e-48 | 7.716814e-46 |
| MsG0180003509.01 | MsG0780039622.01 | -0.853477 | 2.328311e-61 | 5.037362e-58 |
| MsG0180004060.01 | MsG0780039622.01 | -0.803185 | 3.933242e-49 | 1.963745e-46 |
| MsG0180004147.01 | MsG0780039622.01 | -0.845424 | 4.097916e-59 | 6.825812e-56 |
| MsG0180004151.01 | MsG0780039622.01 | -0.808115 | 3.629012e-50 | 2.057427e-47 |
| MsG0180004258.01 | MsG0780039622.01 | -0.834979 | 2.190631e-56 | 2.642320e-53 |
| MsG0180004320.01 | MsG0780039622.01 | -0.821850 | 3.242809e-53 | 2.669180e-50 |
| MsG0180004388.01 | MsG0780039622.01 | -0.820950 | 5.230341e-53 | 4.198206e-50 |
| MsG0180004495.01 | MsG0780039622.01 | -0.810306 | 1.230875e-50 | 7.393458e-48 |
| MsG0180005125.01 | MsG0780039622.01 | -0.804680 | 1.923465e-49 | 9.979510e-47 |
| MsG0180005664.01 | MsG0780039622.01 | -0.832760 | 7.862768e-56 | 8.873206e-53 |
| MsG0180006023.01 | MsG0780039622.01 | -0.854724 | 1.017118e-61 | 2.293057e-58 |
| MsG0180006226.01 | MsG0780039622.01 | 0.883675 | 3.669756e-71 | 2.349773e-67 |
| MsG0180006235.01 | MsG0780039622.01 | -0.807540 | 4.809210e-50 | 2.685708e-47 |
| MsG0180006260.01 | MsG0780039622.01 | -0.810462 | 1.138946e-50 | 6.869642e-48 |
| MsG0280010614.01 | MsG0780039622.01 | -0.806313 | 8.739713e-50 | 4.728552e-47 |
| MsG0280010779.01 | MsG0780039622.01 | -0.810235 | 1.275231e-50 | 7.645688e-48 |
| MsG0280010785.01 | MsG0780039622.01 | -0.823837 | 1.116880e-53 | 9.726363e-51 |
| MsG0280010868.01 | MsG0780039622.01 | -0.812534 | 4.040355e-51 | 2.575499e-48 |
| MsG0280011120.01 | MsG0780039622.01 | 0.807813 | 4.207478e-50 | 2.366489e-47 |
| MsG0280011282.01 | MsG0780039622.01 | -0.836733 | 7.872610e-57 | 1.000944e-53 |
| MsG0380012471.01 | MsG0780039622.01 | -0.827682 | 1.367234e-54 | 1.329271e-51 |
| MsG0380013953.01 | MsG0780039622.01 | 0.807161 | 5.786866e-50 | 3.199987e-47 |
| MsG0380014006.01 | MsG0780039622.01 | 0.821119 | 4.782045e-53 | 3.856223e-50 |
| MsG0380014161.01 | MsG0780039622.01 | -0.820476 | 6.723133e-53 | 5.325249e-50 |
| MsG0380014754.01 | MsG0780039622.01 | -0.842303 | 2.807223e-58 | 4.238482e-55 |
| MsG0680031384.01 | MsG0780039622.01 | -0.819338 | 1.224073e-52 | 9.392306e-50 |
| MsG0680031651.01 | MsG0780039622.01 | -0.801190 | 1.012211e-48 | 4.803792e-46 |
| MsG0680034061.01 | MsG0780039622.01 | -0.815555 | 8.706327e-52 | 6.021847e-49 |
| MsG0480018641.01 | MsG0780039622.01 | -0.812216 | 4.739569e-51 | 2.995646e-48 |
| MsG0480018780.01 | MsG0780039622.01 | -0.807490 | 4.928530e-50 | 2.748874e-47 |
| MsG0480018970.01 | MsG0780039622.01 | -0.817020 | 4.094527e-52 | 2.948062e-49 |
| MsG0480019635.01 | MsG0780039622.01 | -0.844182 | 8.855765e-59 | 1.418371e-55 |
| MsG0480020052.01 | MsG0780039622.01 | 0.806110 | 9.642742e-50 | 5.190280e-47 |
| MsG0480020242.01 | MsG0780039622.01 | -0.808727 | 2.686964e-50 | 1.547896e-47 |
| MsG0480020263.01 | MsG0780039622.01 | -0.810629 | 1.048219e-50 | 6.350859e-48 |
| MsG0480020445.01 | MsG0780039622.01 | -0.827023 | 1.966401e-54 | 1.875471e-51 |
| MsG0480021225.01 | MsG0780039622.01 | -0.815230 | 1.028139e-51 | 7.047976e-49 |
| MsG0480022151.01 | MsG0780039622.01 | 0.840256 | 9.704482e-58 | 1.374547e-54 |
| MsG0480022325.01 | MsG0780039622.01 | -0.805928 | 1.053457e-49 | 5.643972e-47 |
| MsG0480022480.01 | MsG0780039622.01 | -0.821321 | 4.296896e-53 | 3.484335e-50 |
| MsG0480023013.01 | MsG0780039622.01 | -0.802219 | 6.225100e-49 | 3.032297e-46 |
| MsG0480023105.01 | MsG0780039622.01 | -0.808421 | 3.122468e-50 | 1.784606e-47 |
| MsG0480023361.01 | MsG0780039622.01 | -0.803555 | 3.296716e-49 | 1.661765e-46 |
| MsG0480023421.01 | MsG0780039622.01 | -0.806859 | 6.702451e-50 | 3.677556e-47 |
| MsG0480023500.01 | MsG0780039622.01 | -0.874537 | 6.252217e-68 | 2.824337e-64 |
| MsG0480023674.01 | MsG0780039622.01 | 0.802011 | 6.868748e-49 | 3.328169e-46 |
| MsG0480023707.01 | MsG0780039622.01 | -0.846193 | 2.533557e-59 | 4.325799e-56 |
| MsG0480023903.01 | MsG0780039622.01 | -0.808189 | 3.500478e-50 | 1.988504e-47 |
| MsG0580024035.01 | MsG0780039622.01 | -0.847781 | 9.307369e-60 | 1.672364e-56 |
| MsG0580024073.01 | MsG0780039622.01 | -0.804320 | 2.285914e-49 | 1.175044e-46 |
| MsG0580024478.01 | MsG0780039622.01 | -0.839783 | 1.288641e-57 | 1.798498e-54 |
| MsG0580024489.01 | MsG0780039622.01 | -0.806455 | 8.156831e-50 | 4.429373e-47 |
| MsG0580025072.01 | MsG0780039622.01 | -0.800941 | 1.138147e-48 | 5.367726e-46 |
| MsG0580025352.01 | MsG0780039622.01 | -0.840628 | 7.753092e-58 | 1.110881e-54 |
| MsG0380015548.01 | MsG0780039622.01 | -0.800306 | 1.533553e-48 | 7.116919e-46 |
| MsG0380015779.01 | MsG0780039622.01 | -0.807755 | 4.328481e-50 | 2.430879e-47 |
| MsG0380015793.01 | MsG0780039622.01 | 0.873003 | 2.058866e-67 | 8.793303e-64 |
| MsG0380015831.01 | MsG0780039622.01 | -0.813597 | 2.362058e-51 | 1.549218e-48 |
| MsG0380016018.01 | MsG0780039622.01 | -0.802607 | 5.178672e-49 | 2.547647e-46 |
| MsG0380016994.01 | MsG0780039622.01 | -0.829857 | 4.069730e-55 | 4.217237e-52 |
| MsG0380017049.01 | MsG0780039622.01 | -0.803195 | 3.914742e-49 | 1.955024e-46 |
| MsG0380017195.01 | MsG0780039622.01 | -0.801115 | 1.048263e-48 | 4.965688e-46 |
| MsG0380017239.01 | MsG0780039622.01 | -0.801115 | 1.048511e-48 | 4.966804e-46 |
| MsG0380017266.01 | MsG0780039622.01 | 0.811115 | 8.225059e-51 | 5.048193e-48 |
| MsG0380017998.01 | MsG0780039622.01 | -0.864737 | 9.804686e-65 | 3.111213e-61 |
| MsG0380018009.01 | MsG0780039622.01 | -0.806255 | 8.988832e-50 | 4.856322e-47 |
| MsG0480018163.01 | MsG0780039622.01 | -0.803685 | 3.098627e-49 | 1.567002e-46 |
| MsG0480018230.01 | MsG0780039622.01 | -0.810051 | 1.397061e-50 | 8.336358e-48 |
| MsG0480018289.01 | MsG0780039622.01 | -0.837395 | 5.330457e-57 | 6.914537e-54 |
| MsG0580027208.01 | MsG0780039622.01 | -0.817298 | 3.546315e-52 | 2.572639e-49 |
| MsG0580028307.01 | MsG0780039622.01 | -0.835169 | 1.962608e-56 | 2.380641e-53 |
| MsG0580029148.01 | MsG0780039622.01 | -0.812541 | 4.024496e-51 | 2.565997e-48 |
| MsG0580029640.01 | MsG0780039622.01 | -0.812434 | 4.248187e-51 | 2.700968e-48 |
| MsG0580029668.01 | MsG0780039622.01 | 0.803622 | 3.193273e-49 | 1.612277e-46 |
| MsG0680030436.01 | MsG0780039622.01 | -0.831244 | 1.863025e-55 | 2.009908e-52 |
| MsG0680030685.01 | MsG0780039622.01 | -0.805395 | 1.362868e-49 | 7.202180e-47 |
| MsG0280007089.01 | MsG0780039622.01 | -0.820483 | 6.696797e-53 | 5.305359e-50 |
| MsG0280007609.01 | MsG0780039622.01 | -0.884432 | 1.927046e-71 | 1.270693e-67 |
| MsG0280007610.01 | MsG0780039622.01 | -0.806981 | 6.317969e-50 | 3.477423e-47 |
| MsG0280007764.01 | MsG0780039622.01 | -0.800904 | 1.157804e-48 | 5.455523e-46 |
| MsG0280007790.01 | MsG0780039622.01 | -0.825910 | 3.621964e-54 | 3.346286e-51 |
| MsG0280008280.01 | MsG0780039622.01 | -0.840434 | 8.713741e-58 | 1.241055e-54 |
| MsG0280008885.01 | MsG0780039622.01 | -0.817992 | 2.472815e-52 | 1.828412e-49 |
| MsG0280009514.01 | MsG0780039622.01 | -0.853283 | 2.646608e-61 | 5.688819e-58 |
| MsG0280010002.01 | MsG0780039622.01 | -0.806808 | 6.871413e-50 | 3.765252e-47 |
| MsG0280010391.01 | MsG0780039622.01 | -0.819481 | 1.135737e-52 | 8.750514e-50 |
| MsG0780036235.01 | MsG0780039622.01 | -0.824415 | 8.170775e-54 | 7.232131e-51 |
| MsG0780038444.01 | MsG0780039622.01 | -0.814716 | 1.336939e-51 | 9.038407e-49 |
| MsG0780038495.01 | MsG0780039622.01 | -0.834096 | 3.652701e-56 | 4.290379e-53 |
| MsG0780038837.01 | MsG0780039622.01 | -0.844726 | 6.325536e-59 | 1.030524e-55 |
| MsG0780039137.01 | MsG0780039622.01 | -0.817991 | 2.474271e-52 | 1.829436e-49 |
| MsG0780039462.01 | MsG0780039622.01 | 0.911542 | 5.405070e-83 | 1.163816e-78 |
| MsG0780039622.01 | MsG0780039950.01 | -0.831722 | 1.421154e-55 | 1.555470e-52 |
| MsG0780039622.01 | MsG0780040541.01 | -0.805077 | 1.588427e-49 | 8.326081e-47 |
| MsG0780039622.01 | MsG0780040861.01 | -0.826530 | 2.579258e-54 | 2.425132e-51 |
| MsG0780039622.01 | MsG0780041295.01 | -0.810059 | 1.391490e-50 | 8.304906e-48 |
| MsG0780039622.01 | MsG0780041559.01 | -0.825252 | 5.188540e-54 | 4.704306e-51 |
| MsG0780039622.01 | MsG0880042232.01 | -0.811749 | 5.991740e-51 | 3.739468e-48 |
| MsG0780039622.01 | MsG0880042811.01 | -0.802673 | 5.017048e-49 | 2.472314e-46 |
| MsG0780039622.01 | MsG0880043262.01 | -0.810976 | 8.819238e-51 | 5.393553e-48 |
| MsG0780039622.01 | MsG0880043547.01 | -0.802903 | 4.497594e-49 | 2.229456e-46 |
| MsG0780039622.01 | MsG0880044237.01 | -0.802002 | 6.896046e-49 | 3.340700e-46 |
| MsG0780039622.01 | MsG0880044510.01 | -0.808633 | 2.814445e-50 | 1.617342e-47 |
| MsG0780039622.01 | MsG0880045583.01 | -0.814339 | 1.620284e-51 | 1.084302e-48 |
| MsG0780039622.01 | MsG0880046099.01 | 0.803554 | 3.298699e-49 | 1.662692e-46 |
| MsG0780039622.01 | MsG0880046328.01 | -0.823541 | 1.310598e-53 | 1.131695e-50 |
| MsG0780039622.01 | MsG0880046669.01 | -0.807434 | 5.064312e-50 | 2.820413e-47 |
| MsG0780039622.01 | MsG0880046762.01 | -0.868378 | 6.827315e-66 | 2.464240e-62 |
| MsG0780039622.01 | MsG0880046933.01 | -0.846203 | 2.517602e-59 | 4.300113e-56 |
| MsG0780039622.01 | MsG0880047120.01 | -0.835204 | 1.923034e-56 | 2.335217e-53 |
| MsG0780039622.01 | MsG0880047192.01 | -0.809791 | 1.588858e-50 | 9.416824e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039622.01.T01 | MTR_7g076200 | 96.250 | 80 | 3 | 0 | 10 | 89 | 147 | 226 | 1.34e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039622.01.T01 | AT1G01820 | 72.500 | 80 | 22 | 0 | 10 | 89 | 147 | 226 | 1.79e-36 | 126 |
| MsG0780039622.01.T01 | AT2G45740 | 70.000 | 80 | 24 | 0 | 10 | 89 | 148 | 227 | 1.54e-35 | 123 |
| MsG0780039622.01.T01 | AT2G45740 | 70.000 | 80 | 24 | 0 | 10 | 89 | 148 | 227 | 1.54e-35 | 123 |
| MsG0780039622.01.T01 | AT2G45740 | 70.000 | 80 | 24 | 0 | 10 | 89 | 148 | 227 | 1.54e-35 | 123 |
| MsG0780039622.01.T01 | AT3G61070 | 62.500 | 80 | 26 | 1 | 10 | 89 | 147 | 222 | 2.86e-29 | 107 |
| MsG0780039622.01.T01 | AT3G61070 | 62.500 | 80 | 26 | 1 | 10 | 89 | 147 | 222 | 2.86e-29 | 107 |
| MsG0780039622.01.T01 | AT3G61070 | 62.500 | 80 | 26 | 1 | 10 | 89 | 147 | 222 | 2.86e-29 | 107 |
Find 26 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCGGACAGCAGCTATTT+TGG | 0.221592 | 7:+66792767 | None:intergenic |
| CCCCGTGTTACCGGGGCATT+TGG | 0.290157 | 7:-66792993 | MsG0780039622.01.T01:CDS |
| ATCTCTAATATCTTGCTATC+AGG | 0.317696 | 7:-66792961 | MsG0780039622.01.T01:CDS |
| AAAGTCACTCCCCGTGTTAC+CGG | 0.327800 | 7:-66793002 | MsG0780039622.01.T01:CDS |
| TCGGGAGCTTGGAAGACTTC+TGG | 0.372497 | 7:-66793277 | MsG0780039622.01.T01:CDS |
| TTCTGATAGCTTTAGCAGCT+CGG | 0.456319 | 7:+66792751 | None:intergenic |
| AACACGGGGAGTGACTTTCT+CGG | 0.476441 | 7:+66793007 | None:intergenic |
| AAGTCACTCCCCGTGTTACC+GGG | 0.483116 | 7:-66793001 | MsG0780039622.01.T01:CDS |
| ATCCAAATGCCCCGGTAACA+CGG | 0.484737 | 7:+66792991 | None:intergenic |
| TCCAAATGCCCCGGTAACAC+GGG | 0.487559 | 7:+66792992 | None:intergenic |
| ACACGGGGAGTGACTTTCTC+GGG | 0.492261 | 7:+66793008 | None:intergenic |
| GTTTGATTAGCTCGGGAGCT+TGG | 0.509994 | 7:-66793288 | MsG0780039622.01.T01:CDS |
| TTTATGTGTTTGATTAGCTC+GGG | 0.515748 | 7:-66793295 | MsG0780039622.01.T01:CDS |
| TGCTACAGAGGGTAGCAGAT+GGG | 0.538459 | 7:-66792827 | MsG0780039622.01.T01:CDS |
| ACTCTTTCACTCATCAAAGC+AGG | 0.538753 | 7:-66793071 | MsG0780039622.01.T01:CDS |
| AGCAGTTGGACTGCTTCAGT+TGG | 0.552071 | 7:-66793033 | MsG0780039622.01.T01:CDS |
| TTGTCAATAGCGTGCTACAG+AGG | 0.591440 | 7:-66792839 | MsG0780039622.01.T01:CDS |
| TGAAACAAATCCAAATGCCC+CGG | 0.597552 | 7:+66792983 | None:intergenic |
| GTGCTACAGAGGGTAGCAGA+TGG | 0.613154 | 7:-66792828 | MsG0780039622.01.T01:CDS |
| ATTGATACAGTGGTAGCAGT+TGG | 0.619234 | 7:-66793047 | MsG0780039622.01.T01:CDS |
| GATGCAGAATGAGCAATACC+AGG | 0.621633 | 7:-66793120 | MsG0780039622.01.T01:intron |
| TGTCAATAGCGTGCTACAGA+GGG | 0.622177 | 7:-66792838 | MsG0780039622.01.T01:CDS |
| AGTCACTCCCCGTGTTACCG+GGG | 0.628907 | 7:-66793000 | MsG0780039622.01.T01:CDS |
| CAAAGCAGGCATTGATACAG+TGG | 0.634472 | 7:-66793057 | MsG0780039622.01.T01:CDS |
| CCAAATGCCCCGGTAACACG+GGG | 0.648543 | 7:+66792993 | None:intergenic |
| TAGCACGCTATTGACAACAC+TGG | 0.707282 | 7:+66792845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGCAGATACAAAATTTTA+GGG | + | Chr7:66793149-66793168 | None:intergenic | 20.0% |
| ! | AGCTAAAAAAATCAAATGAG+AGG | - | Chr7:66792941-66792960 | MsG0780039622.01.T01:CDS | 25.0% |
| ! | ATTTCCTTACCTTTATCTTA+TGG | - | Chr7:66792893-66792912 | MsG0780039622.01.T01:CDS | 25.0% |
| !! | GTATGCAGATACAAAATTTT+AGG | + | Chr7:66793150-66793169 | None:intergenic | 25.0% |
| !!! | AAGTTGCTTCTTATTTTTCT+TGG | - | Chr7:66793120-66793139 | MsG0780039622.01.T01:intron | 25.0% |
| !!! | CTCATTTGATTTTTTTAGCT+TGG | + | Chr7:66792941-66792960 | None:intergenic | 25.0% |
| ATTCTGCATCCATAAGATAA+AGG | + | Chr7:66792905-66792924 | None:intergenic | 30.0% | |
| ! | ATCTCTAATATCTTGCTATC+AGG | - | Chr7:66793074-66793093 | MsG0780039622.01.T01:CDS | 30.0% |
| ! | TTCTGTCTTTGGTTTACTTT+GGG | - | Chr7:66792864-66792883 | MsG0780039622.01.T01:CDS | 30.0% |
| ! | TTTCTGTCTTTGGTTTACTT+TGG | - | Chr7:66792863-66792882 | MsG0780039622.01.T01:CDS | 30.0% |
| ATCTTCGAAGTTTCTGTCTT+TGG | - | Chr7:66792853-66792872 | MsG0780039622.01.T01:CDS | 35.0% | |
| CGAAGATTTATACACATGCA+TGG | + | Chr7:66792840-66792859 | None:intergenic | 35.0% | |
| GCATCCATAAGATAAAGGTA+AGG | + | Chr7:66792900-66792919 | None:intergenic | 35.0% | |
| ! | TCTCTTTTCGCTAAAAGACA+CGG | - | Chr7:66793236-66793255 | MsG0780039622.01.T01:CDS | 35.0% |
| !!! | TTGATTTTTTTAGCTTGGCC+TGG | + | Chr7:66792936-66792955 | None:intergenic | 35.0% |
| ACTCTTTCACTCATCAAAGC+AGG | - | Chr7:66792964-66792983 | MsG0780039622.01.T01:CDS | 40.0% | |
| ATTGATACAGTGGTAGCAGT+TGG | - | Chr7:66792988-66793007 | MsG0780039622.01.T01:CDS | 40.0% | |
| TGAAACAAATCCAAATGCCC+CGG | + | Chr7:66793055-66793074 | None:intergenic | 40.0% | |
| !! | TTCTGATAGCTTTAGCAGCT+CGG | + | Chr7:66793287-66793306 | None:intergenic | 40.0% |
| GATGCAGAATGAGCAATACC+AGG | - | Chr7:66792915-66792934 | MsG0780039622.01.T01:CDS | 45.0% | |
| TAGCACGCTATTGACAACAC+TGG | + | Chr7:66793193-66793212 | None:intergenic | 45.0% | |
| TGTCAATAGCGTGCTACAGA+GGG | - | Chr7:66793197-66793216 | MsG0780039622.01.T01:intron | 45.0% | |
| TTGTCAATAGCGTGCTACAG+AGG | - | Chr7:66793196-66793215 | MsG0780039622.01.T01:intron | 45.0% | |
| !! | CAAAGCAGGCATTGATACAG+TGG | - | Chr7:66792978-66792997 | MsG0780039622.01.T01:CDS | 45.0% |
| AAAGTCACTCCCCGTGTTAC+CGG | - | Chr7:66793033-66793052 | MsG0780039622.01.T01:CDS | 50.0% | |
| AACACGGGGAGTGACTTTCT+CGG | + | Chr7:66793031-66793050 | None:intergenic | 50.0% | |
| AGCAGTTGGACTGCTTCAGT+TGG | - | Chr7:66793002-66793021 | MsG0780039622.01.T01:CDS | 50.0% | |
| ATCCAAATGCCCCGGTAACA+CGG | + | Chr7:66793047-66793066 | None:intergenic | 50.0% | |
| TGCTACAGAGGGTAGCAGAT+GGG | - | Chr7:66793208-66793227 | MsG0780039622.01.T01:intron | 50.0% | |
| ! | AGCTCGGACAGCAGCTATTT+TGG | + | Chr7:66793271-66793290 | None:intergenic | 50.0% |
| ! | GTTTGATTAGCTCGGGAGCT+TGG | - | Chr7:66792747-66792766 | MsG0780039622.01.T01:CDS | 50.0% |
| AAGTCACTCCCCGTGTTACC+GGG | - | Chr7:66793034-66793053 | MsG0780039622.01.T01:CDS | 55.0% | |
| ACACGGGGAGTGACTTTCTC+GGG | + | Chr7:66793030-66793049 | None:intergenic | 55.0% | |
| GTGCTACAGAGGGTAGCAGA+TGG | - | Chr7:66793207-66793226 | MsG0780039622.01.T01:intron | 55.0% | |
| TCCAAATGCCCCGGTAACAC+GGG | + | Chr7:66793046-66793065 | None:intergenic | 55.0% | |
| TCGGGAGCTTGGAAGACTTC+TGG | - | Chr7:66792758-66792777 | MsG0780039622.01.T01:CDS | 55.0% | |
| AGTCACTCCCCGTGTTACCG+GGG | - | Chr7:66793035-66793054 | MsG0780039622.01.T01:CDS | 60.0% | |
| CCAAATGCCCCGGTAACACG+GGG | + | Chr7:66793045-66793064 | None:intergenic | 60.0% | |
| ! | CCCCGTGTTACCGGGGCATT+TGG | - | Chr7:66793042-66793061 | MsG0780039622.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 66792743 | 66793314 | 66792743 | ID=MsG0780039622.01;Name=MsG0780039622.01 |
| Chr7 | mRNA | 66792743 | 66793314 | 66792743 | ID=MsG0780039622.01.T01;Parent=MsG0780039622.01;Name=MsG0780039622.01.T01;_AED=0.50;_eAED=0.73;_QI=0|1|0|1|1|1|2|0|159 |
| Chr7 | exon | 66793228 | 66793314 | 66793228 | ID=MsG0780039622.01.T01:exon:13259;Parent=MsG0780039622.01.T01 |
| Chr7 | exon | 66792743 | 66793135 | 66792743 | ID=MsG0780039622.01.T01:exon:13258;Parent=MsG0780039622.01.T01 |
| Chr7 | CDS | 66793228 | 66793314 | 66793228 | ID=MsG0780039622.01.T01:cds;Parent=MsG0780039622.01.T01 |
| Chr7 | CDS | 66792743 | 66793135 | 66792743 | ID=MsG0780039622.01.T01:cds;Parent=MsG0780039622.01.T01 |
| Gene Sequence |
| Protein sequence |
