AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035966.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035966.01.T01 MTR_7g006080 98.958 288 3 0 1 288 57 344 0.0 581
MsG0780035966.01.T01 MTR_7g104290 52.308 260 120 2 2 259 63 320 1.22e-89 271
MsG0780035966.01.T01 MTR_7g104300 50.958 261 123 2 2 259 63 321 6.40e-86 261
MsG0780035966.01.T01 MTR_7g006100 91.398 93 8 0 15 107 270 362 1.18e-51 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035966.01.T01 AT3G59310 67.636 275 84 1 2 271 58 332 1.84e-138 394
MsG0780035966.01.T01 AT3G59310 60.784 306 84 2 2 271 58 363 6.95e-132 379
MsG0780035966.01.T01 AT3G59340 72.016 243 68 0 2 244 61 303 7.95e-132 377
MsG0780035966.01.T01 AT3G59340 72.016 243 68 0 2 244 88 330 9.40e-132 378
MsG0780035966.01.T01 AT3G59340 72.016 243 68 0 2 244 88 330 9.40e-132 378
MsG0780035966.01.T01 AT3G59340 72.016 243 68 0 2 244 88 330 9.40e-132 378
MsG0780035966.01.T01 AT3G59310 62.909 275 79 2 2 271 58 314 6.49e-123 354
MsG0780035966.01.T01 AT3G59320 62.545 275 103 0 2 276 59 333 1.01e-111 326
MsG0780035966.01.T01 AT3G59320 60.776 232 91 0 45 276 1 232 1.26e-87 261
MsG0780035966.01.T01 AT3G59330 73.718 156 39 1 2 157 85 238 1.36e-78 239
MsG0780035966.01.T01 AT3G59330 73.856 153 38 1 2 154 85 235 3.06e-77 236
MsG0780035966.01.T01 AT3G59330 75.887 141 34 0 17 157 89 229 5.81e-74 227

Find 82 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTATTTGTTGAAATTT+AGG 0.132074 7:+726554 MsG0780035966.01.T01:three_prime_UTR
AATAGATTTCGTATTCTATT+TGG 0.186925 7:-726607 None:intergenic
CAGCAATAATAGTGTGTTAT+TGG 0.197604 7:+726656 MsG0780035966.01.T01:three_prime_UTR
TGGACTAAGAACACATTAAT+TGG 0.221474 7:+722216 MsG0780035966.01.T01:five_prime_UTR
ATCCTTGTTGTTCTTCTTGT+TGG 0.221931 7:-722168 None:intergenic
CTCTTCTCATCACTGCTAAA+AGG 0.243998 7:+722262 MsG0780035966.01.T01:five_prime_UTR
CTGAAAGAGGTTCTTCTTCA+TGG 0.249185 7:-726422 None:intergenic
TGCTTCTTGCATTGCACTCT+TGG 0.249507 7:-726480 None:intergenic
ACATTAATTGGCCTTGCTTT+AGG 0.259223 7:+722228 MsG0780035966.01.T01:five_prime_UTR
TGGTACTATTATATACTTCT+TGG 0.287931 7:+723306 MsG0780035966.01.T01:CDS
ATGGCAATGTTAGGTCTCTT+TGG 0.309096 7:+724794 MsG0780035966.01.T01:CDS
TCGTCGTATTGCAGAGGTTT+TGG 0.323324 7:+726237 MsG0780035966.01.T01:intron
TCCTTGTTGTTCTTCTTGTT+GGG 0.331764 7:-722167 None:intergenic
TTTGCTATGAGTTGCTGAAC+TGG 0.331987 7:-726325 None:intergenic
AAATCTATTCACTGGTCGGC+TGG 0.333126 7:+724955 MsG0780035966.01.T01:CDS
TGTTAAATAAATGAATATAT+TGG 0.335979 7:+722102 MsG0780035966.01.T01:five_prime_UTR
AGAAGAACCTCTTTCAGAAA+TGG 0.338331 7:+726428 MsG0780035966.01.T01:three_prime_UTR
CATGCGTCATGCTGCTTACA+TGG 0.358791 7:+723801 MsG0780035966.01.T01:CDS
ATTATGCTTTCCAGGTTGAT+TGG 0.366989 7:+725766 MsG0780035966.01.T01:intron
TATAGATTCAAGAAGATAAC+TGG 0.382296 7:+723842 MsG0780035966.01.T01:CDS
ATTCGTACCTTAAGCAGAAC+AGG 0.384721 7:-725437 None:intergenic
TCATCCTGTCTGATTGCAAC+AGG 0.386095 7:-726297 None:intergenic
GGTGGAAGTAATGCTCGTTT+AGG 0.403367 7:+724117 MsG0780035966.01.T01:intron
GGTGTAATTGTTTGCATAGC+CGG 0.409701 7:+723863 MsG0780035966.01.T01:CDS
GCGTTTGGTGCTGTTGTCAT+TGG 0.411820 7:+725801 MsG0780035966.01.T01:CDS
CATAGCAAAGGAAATGTGTC+TGG 0.413561 7:+726339 MsG0780035966.01.T01:CDS
TCTAGTCCCTGTTCTGCTTA+AGG 0.413618 7:+725430 MsG0780035966.01.T01:CDS
GAATAGCCCATTTCTGAAAG+AGG 0.417810 7:-726435 None:intergenic
GAAGAGCTCATGGCAATGTT+AGG 0.420524 7:+724785 MsG0780035966.01.T01:CDS
GAAGAACCTCTTTCAGAAAT+GGG 0.422898 7:+726429 MsG0780035966.01.T01:three_prime_UTR
TTCTTGCATTGCACTCTTGG+AGG 0.434118 7:-726477 None:intergenic
CTATTATATACTTCTTGGAT+TGG 0.443539 7:+723311 MsG0780035966.01.T01:CDS
TGTTTCTAATACAGGCGAAA+TGG 0.446396 7:+723286 MsG0780035966.01.T01:intron
TGGATATTAAGAAATACTAT+TGG 0.447781 7:+722196 MsG0780035966.01.T01:five_prime_UTR
CTTTCAAGGATACATTTGAA+TGG 0.460817 7:-724831 None:intergenic
GGTTCTTCAACAGCATTAGC+AGG 0.462571 7:-726276 None:intergenic
TGGATGTACTACTTGGCGTT+TGG 0.468134 7:+725786 MsG0780035966.01.T01:CDS
TTTAGAAAGGACTGTGATGT+TGG 0.485502 7:-722507 None:intergenic
TGTTGTTCTTCTTGTTGGGA+CGG 0.486167 7:-722163 None:intergenic
AATCTATTCACTGGTCGGCT+GGG 0.490397 7:+724956 MsG0780035966.01.T01:CDS
AGATTTCGTATTCTATTTGG+TGG 0.493197 7:-726604 None:intergenic
TTATTTGTTGAAATTTAGGT+TGG 0.496495 7:+726558 MsG0780035966.01.T01:three_prime_UTR
GGAGACGTTCTTGTTATCGC+TGG 0.498105 7:+724138 MsG0780035966.01.T01:CDS
AAGAACAACAAGGATGATGA+TGG 0.517507 7:+722176 MsG0780035966.01.T01:five_prime_UTR
CACCTTATGAACAGTTGTGA+AGG 0.528488 7:+723724 MsG0780035966.01.T01:intron
GGTTGATTGGATGTACTACT+TGG 0.533288 7:+725779 MsG0780035966.01.T01:intron
GATTTCGTATTCTATTTGGT+GGG 0.534105 7:-726603 None:intergenic
ATGAGCTTAAATCTATTCAC+TGG 0.535645 7:+724947 MsG0780035966.01.T01:CDS
ATCTATTCACTGGTCGGCTG+GGG 0.536644 7:+724957 MsG0780035966.01.T01:CDS
GCAATGTTAGGTCTCTTTGG+TGG 0.537905 7:+724797 MsG0780035966.01.T01:CDS
TATACTTTCTTAAGCTACCC+AGG 0.539167 7:-726373 None:intergenic
TGTTGCAATCAGACAGGATG+AGG 0.549578 7:+726299 MsG0780035966.01.T01:CDS
GACATTACTGAATGCATACA+AGG 0.557186 7:-724166 None:intergenic
GTGTGATGTTACTTGACTGC+TGG 0.573092 7:+723771 MsG0780035966.01.T01:CDS
CATCTTCGCTTACCATGAGA+AGG 0.573397 7:+725647 MsG0780035966.01.T01:CDS
GAATAAGCAAGCACCTTGAG+AGG 0.574362 7:-722582 None:intergenic
CTCTTCTGACCTCAGACATG+TGG 0.578272 7:+725610 MsG0780035966.01.T01:CDS
AGCTTAAGAAAGTATAGACC+TGG 0.578972 7:+726380 MsG0780035966.01.T01:exon
CTACAGAAGAAAACCTCTCA+AGG 0.581731 7:+722569 MsG0780035966.01.T01:CDS
TGCTGATAGAGAAGAGCTCA+TGG 0.583244 7:+724775 MsG0780035966.01.T01:CDS
AGAACCTGTTGCAATCAGAC+AGG 0.585681 7:+726293 MsG0780035966.01.T01:CDS
AAGCAGCATGACGCATGGAA+TGG 0.591362 7:-723795 None:intergenic
ACTTCTTGGATTGGTTGATG+TGG 0.592336 7:+723320 MsG0780035966.01.T01:CDS
CATGTAAGCAGCATGACGCA+TGG 0.595629 7:-723800 None:intergenic
AAAGAAATTGACCTAAAGCA+AGG 0.605050 7:-722239 None:intergenic
GCTTAAATCTATTCACTGGT+CGG 0.611387 7:+724951 MsG0780035966.01.T01:CDS
AAATACAACTAGGACAAGGC+CGG 0.612279 7:-723882 None:intergenic
ATAGCAAAGGAAATGTGTCT+GGG 0.615099 7:+726340 MsG0780035966.01.T01:CDS
AGTTCAGCAACTCATAGCAA+AGG 0.620241 7:+726327 MsG0780035966.01.T01:CDS
GTTCATGCTGGTGACCGTGC+AGG 0.625656 7:+723911 MsG0780035966.01.T01:CDS
GTTCTTCAACAGCATTAGCA+GGG 0.626050 7:-726275 None:intergenic
TATTTCGTCTCACAGCTCAA+CGG 0.632141 7:+725567 MsG0780035966.01.T01:intron
TAACATCACACTTGTAAGTG+AGG 0.632215 7:-723759 None:intergenic
TATAAAGCCACCTACCTGCA+CGG 0.642251 7:-723925 None:intergenic
GTTACTGACAGACCTTCTCA+TGG 0.642594 7:-725659 None:intergenic
GAACATCCGAAAATACAACT+AGG 0.652850 7:-723892 None:intergenic
TAAGACAGACCACATGTCTG+AGG 0.664215 7:-725619 None:intergenic
CCGAAAATACAACTAGGACA+AGG 0.664542 7:-723886 None:intergenic
TTCGTACCTTAAGCAGAACA+GGG 0.675043 7:-725436 None:intergenic
TAGACCTGGAGATCCATGCA+AGG 0.683078 7:+726394 MsG0780035966.01.T01:three_prime_UTR
TGCATTCAGTAATGTCAGTG+AGG 0.688986 7:+724173 MsG0780035966.01.T01:CDS
TCCCAACAAGAAGAACAACA+AGG 0.743889 7:+722166 MsG0780035966.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAAATAAATGAATATAT+TGG + Chr7:722102-722121 MsG0780035966.01.T01:five_prime_UTR 10.0%
!! AAAAAACCTAATAAGTTTAT+AGG + Chr7:723531-723550 MsG0780035966.01.T01:intron 15.0%
!! AAAAATTGTTATGTTGAATT+TGG + Chr7:724621-724640 MsG0780035966.01.T01:intron 15.0%
!! AAAATTGTTATGTTGAATTT+GGG + Chr7:724622-724641 MsG0780035966.01.T01:intron 15.0%
!! AATATATTGGAAAGAAAAAA+AGG + Chr7:722115-722134 MsG0780035966.01.T01:five_prime_UTR 15.0%
!! AGAAAAAAAGGATTTAATTA+AGG + Chr7:722127-722146 MsG0780035966.01.T01:five_prime_UTR 15.0%
!! CATCATAAGAAAAAAATATT+TGG - Chr7:726215-726234 None:intergenic 15.0%
!! TATGAATATAGAGTAATAAA+AGG - Chr7:725266-725285 None:intergenic 15.0%
!! TTAACAAAAATGTCTTTAAA+CGG - Chr7:723258-723277 None:intergenic 15.0%
!!! CTTATTATTTGTTGAAATTT+AGG + Chr7:726554-726573 MsG0780035966.01.T01:three_prime_UTR 15.0%
!!! TATAAATATTGAGCTTTTTA+CGG + Chr7:725516-725535 MsG0780035966.01.T01:intron 15.0%
!! AAACAAAATAACAATAACAC+GGG - Chr7:724729-724748 None:intergenic 20.0%
!! AAATTGTTATGTTGAATTTG+GGG + Chr7:724623-724642 MsG0780035966.01.T01:intron 20.0%
!! AATAAGTTTATAGGTGTTTA+TGG + Chr7:723540-723559 MsG0780035966.01.T01:intron 20.0%
!! AATAGATTTCGTATTCTATT+TGG - Chr7:726610-726629 None:intergenic 20.0%
!! AGTTCATATATCAAACTAAT+TGG - Chr7:725318-725337 None:intergenic 20.0%
!! CAAAAACACATAATTTAGAA+AGG - Chr7:722523-722542 None:intergenic 20.0%
!! CAATATATAATCAACTTTCA+AGG - Chr7:724848-724867 None:intergenic 20.0%
!! GAAACAAAATAACAATAACA+CGG - Chr7:724730-724749 None:intergenic 20.0%
!! TAAACACCTATAAACTTATT+AGG - Chr7:723540-723559 None:intergenic 20.0%
!! TAAACATCAACAAATTATAG+CGG + Chr7:725168-725187 MsG0780035966.01.T01:intron 20.0%
!! TACTGATCATAATAAAAGAT+AGG - Chr7:724046-724065 None:intergenic 20.0%
!! TGATGATATTATCATATCAT+AGG + Chr7:724096-724115 MsG0780035966.01.T01:intron 20.0%
!! TGGATATTAAGAAATACTAT+TGG + Chr7:722196-722215 MsG0780035966.01.T01:five_prime_UTR 20.0%
!! TTATGTTTATTATCAAAGTG+TGG + Chr7:726062-726081 MsG0780035966.01.T01:intron 20.0%
!!! ACAATATTTTTGTCGTATTA+TGG + Chr7:722470-722489 MsG0780035966.01.T01:intron 20.0%
!!! ACTAGTTATTAGTATTGAAA+AGG + Chr7:724284-724303 MsG0780035966.01.T01:intron 20.0%
!!! ATAAATATTGAGCTTTTTAC+GGG + Chr7:725517-725536 MsG0780035966.01.T01:intron 20.0%
!!! GGTTTTATTATTTTCTAAAG+AGG + Chr7:723022-723041 MsG0780035966.01.T01:intron 20.0%
!!! TGAAAGTTGATTATATATTG+AGG + Chr7:724848-724867 MsG0780035966.01.T01:intron 20.0%
!!! TTATTTGTTGAAATTTAGGT+TGG + Chr7:726558-726577 MsG0780035966.01.T01:three_prime_UTR 20.0%
! AAGGTACGAATTTAAACATA+AGG + Chr7:725449-725468 MsG0780035966.01.T01:intron 25.0%
! ACATGCATGAAACTTATTTA+GGG + Chr7:726143-726162 MsG0780035966.01.T01:intron 25.0%
! AGATAGATAAAAAGGAAGTA+AGG - Chr7:725684-725703 None:intergenic 25.0%
! ATGACTTCCAAGAAAAAATA+TGG - Chr7:724004-724023 None:intergenic 25.0%
! ATTTGTGACTCATAATTAGT+AGG - Chr7:725719-725738 None:intergenic 25.0%
! CAAACTGAATTTCATTCAAA+CGG + Chr7:724597-724616 MsG0780035966.01.T01:intron 25.0%
! CTATTATATACTTCTTGGAT+TGG + Chr7:723311-723330 MsG0780035966.01.T01:CDS 25.0%
! GATTATATATTGAGGACTAT+TGG + Chr7:724856-724875 MsG0780035966.01.T01:intron 25.0%
! TATAGATTCAAGAAGATAAC+TGG + Chr7:723842-723861 MsG0780035966.01.T01:CDS 25.0%
! TATCTGCAATGAAAATTGTT+TGG + Chr7:723167-723186 MsG0780035966.01.T01:intron 25.0%
! TCATGACCAAAGTAATTAAA+AGG - Chr7:722349-722368 None:intergenic 25.0%
! TCTGAATATAATAATGAGCA+TGG - Chr7:724448-724467 None:intergenic 25.0%
! TCTTCTGATTTAGCTAAAAA+AGG + Chr7:722292-722311 MsG0780035966.01.T01:five_prime_UTR 25.0%
! TGATATTATCATATCATAGG+TGG + Chr7:724099-724118 MsG0780035966.01.T01:intron 25.0%
! TGGTACTATTATATACTTCT+TGG + Chr7:723306-723325 MsG0780035966.01.T01:CDS 25.0%
! TTTCTGTGAGATAGATAAAA+AGG - Chr7:725692-725711 None:intergenic 25.0%
!! GTTATTAGTATTGAAAAGGT+TGG + Chr7:724288-724307 MsG0780035966.01.T01:intron 25.0%
!! TCTTAATGTTCGTTTTCATT+AGG + Chr7:724341-724360 MsG0780035966.01.T01:intron 25.0%
!! TCTTTAGGTTCTAATTTATG+AGG + Chr7:723506-723525 MsG0780035966.01.T01:intron 25.0%
!!! CATAAGGATTCTAAAGATTT+TGG + Chr7:725465-725484 MsG0780035966.01.T01:intron 25.0%
!!! CTTCATATTGTTTCTAATAC+AGG + Chr7:723278-723297 MsG0780035966.01.T01:intron 25.0%
!!! TATTTTTGTCGTATTATGGT+AGG + Chr7:722474-722493 MsG0780035966.01.T01:intron 25.0%
!!! TCACTTCCTTTTAATTACTT+TGG + Chr7:722340-722359 MsG0780035966.01.T01:intron 25.0%
!!! TTTTCATTTTGAAGCCTTAA+TGG + Chr7:724897-724916 MsG0780035966.01.T01:intron 25.0%
AAAAACTAGCATCTCAACAT+TGG - Chr7:723048-723067 None:intergenic 30.0%
AAAGAAATTGACCTAAAGCA+AGG - Chr7:722242-722261 None:intergenic 30.0%
AAGTCAACATAAAGCTAGTT+TGG - Chr7:723656-723675 None:intergenic 30.0%
ACTTTCATTTCTTGTTCTGT+TGG + Chr7:725856-725875 MsG0780035966.01.T01:intron 30.0%
AGATTTCGTATTCTATTTGG+TGG - Chr7:726607-726626 None:intergenic 30.0%
ATAAAACCCCATTCAGAATT+AGG - Chr7:723010-723029 None:intergenic 30.0%
ATGAGCTTAAATCTATTCAC+TGG + Chr7:724947-724966 MsG0780035966.01.T01:CDS 30.0%
ATGGCATAAGCACTTAATTA+AGG - Chr7:722810-722829 None:intergenic 30.0%
ATGGCTTATACATAATAAGC+TGG - Chr7:722649-722668 None:intergenic 30.0%
CAGCAATAATAGTGTGTTAT+TGG + Chr7:726656-726675 MsG0780035966.01.T01:three_prime_UTR 30.0%
CATCAGACAAACATGATAAA+TGG - Chr7:724081-724100 None:intergenic 30.0%
CTCAAATAAGTCAATCCAAA+CGG + Chr7:722782-722801 MsG0780035966.01.T01:intron 30.0%
CTCAGTTGAAATAAGTCTTT+AGG + Chr7:723491-723510 MsG0780035966.01.T01:intron 30.0%
CTTTCAAGGATACATTTGAA+TGG - Chr7:724834-724853 None:intergenic 30.0%
CTTTCATTTCTTGTTCTGTT+GGG + Chr7:725857-725876 MsG0780035966.01.T01:intron 30.0%
GACATGCATGAAACTTATTT+AGG + Chr7:726142-726161 MsG0780035966.01.T01:intron 30.0%
GATTTCGTATTCTATTTGGT+GGG - Chr7:726606-726625 None:intergenic 30.0%
GGTCTCACATAAAAAACTTT+AGG - Chr7:725245-725264 None:intergenic 30.0%
TAAAACCCCATTCAGAATTA+GGG - Chr7:723009-723028 None:intergenic 30.0%
TAGAACTAATTATGCTTTCC+AGG + Chr7:725758-725777 MsG0780035966.01.T01:intron 30.0%
TGGACTAAGAACACATTAAT+TGG + Chr7:722216-722235 MsG0780035966.01.T01:five_prime_UTR 30.0%
TGGATTATCTTCCAGATTAT+GGG + Chr7:723463-723482 MsG0780035966.01.T01:intron 30.0%
TGGCATAAGCACTTAATTAA+GGG - Chr7:722809-722828 None:intergenic 30.0%
TTCAGTTTGACAAGAAACTA+TGG - Chr7:724586-724605 None:intergenic 30.0%
TTGGATTATCTTCCAGATTA+TGG + Chr7:723462-723481 MsG0780035966.01.T01:intron 30.0%
TTTACTAAAAACTCCTGCAA+TGG - Chr7:724752-724771 None:intergenic 30.0%
! GATCGATATTTAGAAAGCAT+TGG + Chr7:723388-723407 MsG0780035966.01.T01:intron 30.0%
! TAATGTTCGTTTTCATTAGG+CGG + Chr7:724344-724363 MsG0780035966.01.T01:intron 30.0%
! TATCTTCCAATGTTTGTTAC+AGG + Chr7:725361-725380 MsG0780035966.01.T01:intron 30.0%
! TGCTAGCATAAACATTTTTG+CGG - Chr7:722753-722772 None:intergenic 30.0%
! TTATAGCGGAAATAGTTTAG+AGG + Chr7:725182-725201 MsG0780035966.01.T01:intron 30.0%
! TTATGCATTTTGCAACACTT+TGG + Chr7:724218-724237 MsG0780035966.01.T01:intron 30.0%
!! GTGTTTTTGATGATTGTCTA+TGG + Chr7:722534-722553 MsG0780035966.01.T01:exon 30.0%
!!! CTGTTTTTTATAAGCTATCC+AGG + Chr7:722888-722907 MsG0780035966.01.T01:intron 30.0%
!!! GCATTCTCCATATTTTTTCT+TGG + Chr7:723994-724013 MsG0780035966.01.T01:intron 30.0%
!!! TCCTTTTTTTGGATTTTCTG+TGG + Chr7:725388-725407 MsG0780035966.01.T01:CDS 30.0%
!!! TGTTATTTTGTTTCCATTGC+AGG + Chr7:724736-724755 MsG0780035966.01.T01:intron 30.0%
!!! TTACAGGCATTTCCTTTTTT+TGG + Chr7:725377-725396 MsG0780035966.01.T01:intron 30.0%
AACAGACCCTAATTCTGAAT+GGG + Chr7:723000-723019 MsG0780035966.01.T01:intron 35.0%
AAGAACAACAAGGATGATGA+TGG + Chr7:722176-722195 MsG0780035966.01.T01:five_prime_UTR 35.0%
ACAGGGCAGAAATAACATAA+CGG - Chr7:723217-723236 None:intergenic 35.0%
AGAAGAACCTCTTTCAGAAA+TGG + Chr7:726428-726447 MsG0780035966.01.T01:three_prime_UTR 35.0%
AGCAGTTCCCATAAAGAAAA+TGG - Chr7:723116-723135 None:intergenic 35.0%
AGCTAAGGAAGTTTAAACTC+AGG + Chr7:725120-725139 MsG0780035966.01.T01:intron 35.0%
AGCTCTGTAAATGACCATTA+AGG - Chr7:724914-724933 None:intergenic 35.0%
ATAGCAAAGGAAATGTGTCT+GGG + Chr7:726340-726359 MsG0780035966.01.T01:CDS 35.0%
ATTCAGAATTAGGGTCTGTT+AGG - Chr7:723000-723019 None:intergenic 35.0%
ATTTGGTCCATTACAGACTA+AGG - Chr7:726198-726217 None:intergenic 35.0%
CAAAAGATGAGAAGAAGCTA+AGG + Chr7:725105-725124 MsG0780035966.01.T01:intron 35.0%
CATAAGCAGTTGAGACTAAT+TGG - Chr7:722950-722969 None:intergenic 35.0%
GAAATGCCTGTAACAAACAT+TGG - Chr7:725370-725389 None:intergenic 35.0%
GAACATCCGAAAATACAACT+AGG - Chr7:723895-723914 None:intergenic 35.0%
GAAGAACCTCTTTCAGAAAT+GGG + Chr7:726429-726448 MsG0780035966.01.T01:three_prime_UTR 35.0%
GAAGATAATCCAAACTAGTG+GGG - Chr7:723455-723474 None:intergenic 35.0%
GACATTACTGAATGCATACA+AGG - Chr7:724169-724188 None:intergenic 35.0%
GAGATATCCTTAGTCTGTAA+TGG + Chr7:726188-726207 MsG0780035966.01.T01:intron 35.0%
GCCACAGAAAATCCAAAAAA+AGG - Chr7:725392-725411 None:intergenic 35.0%
GCTGGAAATGAAGTTGTTTA+TGG - Chr7:722631-722650 None:intergenic 35.0%
GCTTAAATCTATTCACTGGT+CGG + Chr7:724951-724970 MsG0780035966.01.T01:CDS 35.0%
GGAAGATAATCCAAACTAGT+GGG - Chr7:723456-723475 None:intergenic 35.0%
TAAACAATACCCCACTAGTT+TGG + Chr7:723443-723462 MsG0780035966.01.T01:intron 35.0%
TAACAGACCCTAATTCTGAA+TGG + Chr7:722999-723018 MsG0780035966.01.T01:intron 35.0%
TAACATCACACTTGTAAGTG+AGG - Chr7:723762-723781 None:intergenic 35.0%
TATACTTTCTTAAGCTACCC+AGG - Chr7:726376-726395 None:intergenic 35.0%
TCTTTATGGGAACTGCTTAT+GGG + Chr7:723119-723138 MsG0780035966.01.T01:intron 35.0%
TGGAAGATAATCCAAACTAG+TGG - Chr7:723457-723476 None:intergenic 35.0%
TGGTAAGTGAGTATCTTTGA+TGG + Chr7:723356-723375 MsG0780035966.01.T01:intron 35.0%
TTACTCTTCATCAATCCAAG+AGG - Chr7:725151-725170 None:intergenic 35.0%
TTCTTTATGGGAACTGCTTA+TGG + Chr7:723118-723137 MsG0780035966.01.T01:intron 35.0%
TTTAGAAAGGACTGTGATGT+TGG - Chr7:722510-722529 None:intergenic 35.0%
! ACGTGTGTGCATAAGTTTTT+AGG - Chr7:723964-723983 None:intergenic 35.0%
! AGACTAATTGGCAAAGCTTT+TGG - Chr7:722938-722957 None:intergenic 35.0%
! AGCCATCTTTTTATGTGTCA+GGG + Chr7:724410-724429 MsG0780035966.01.T01:intron 35.0%
! AGCTTAAGAAAGTATAGACC+TGG + Chr7:726380-726399 MsG0780035966.01.T01:exon 35.0%
! CCTTGTCCTAGTTGTATTTT+CGG + Chr7:723886-723905 MsG0780035966.01.T01:CDS 35.0%
! CTTATGGGAAGTATAAGAGA+TGG + Chr7:723134-723153 MsG0780035966.01.T01:intron 35.0%
! GATGTGGAAGCAAATTTTCT+TGG + Chr7:723336-723355 MsG0780035966.01.T01:CDS 35.0%
! TGTTTCTAATACAGGCGAAA+TGG + Chr7:723286-723305 MsG0780035966.01.T01:intron 35.0%
! TTTTATAAGCTATCCAGGAG+AGG + Chr7:722893-722912 MsG0780035966.01.T01:intron 35.0%
!! ACATTAATTGGCCTTGCTTT+AGG + Chr7:722228-722247 MsG0780035966.01.T01:five_prime_UTR 35.0%
!! ATCATGGGCCATTTTCTTTA+TGG + Chr7:723105-723124 MsG0780035966.01.T01:intron 35.0%
!! ATCCTTGTTGTTCTTCTTGT+TGG - Chr7:722171-722190 None:intergenic 35.0%
!! ATTATGCTTTCCAGGTTGAT+TGG + Chr7:725766-725785 MsG0780035966.01.T01:intron 35.0%
!! CTTATTTTCATTACCTCTCC+TGG - Chr7:722909-722928 None:intergenic 35.0%
!! TCATGGGCCATTTTCTTTAT+GGG + Chr7:723106-723125 MsG0780035966.01.T01:intron 35.0%
!! TCCTTGTTGTTCTTCTTGTT+GGG - Chr7:722170-722189 None:intergenic 35.0%
!!! CTGTTGGGATTCTTTTTTTC+TGG + Chr7:725872-725891 MsG0780035966.01.T01:intron 35.0%
AAACTCACTGCAAGTGTTTC+AGG + Chr7:724387-724406 MsG0780035966.01.T01:intron 40.0%
AAATACAACTAGGACAAGGC+CGG - Chr7:723885-723904 None:intergenic 40.0%
AAGTGACGCAAGTGCATAAA+AGG - Chr7:724676-724695 None:intergenic 40.0%
ACAGACCCTAATTCTGAATG+GGG + Chr7:723001-723020 MsG0780035966.01.T01:intron 40.0%
ACTGAGAAGATCCCATAATC+TGG - Chr7:723477-723496 None:intergenic 40.0%
AGAAAATGGCCCATGATTGA+AGG - Chr7:723102-723121 None:intergenic 40.0%
AGTAGTACATCCAATCAACC+TGG - Chr7:725779-725798 None:intergenic 40.0%
AGTTCAGCAACTCATAGCAA+AGG + Chr7:726327-726346 MsG0780035966.01.T01:CDS 40.0%
ATGGCAATGTTAGGTCTCTT+TGG + Chr7:724794-724813 MsG0780035966.01.T01:CDS 40.0%
ATTCGTACCTTAAGCAGAAC+AGG - Chr7:725440-725459 None:intergenic 40.0%
ATTGCCTATGGCCTACTTAT+GGG + Chr7:724546-724565 MsG0780035966.01.T01:intron 40.0%
CACCTTATGAACAGTTGTGA+AGG + Chr7:723724-723743 MsG0780035966.01.T01:intron 40.0%
CACTTAATTAAGGGTCCGTT+TGG - Chr7:722800-722819 None:intergenic 40.0%
CATAGCAAAGGAAATGTGTC+TGG + Chr7:726339-726358 MsG0780035966.01.T01:CDS 40.0%
CCGAAAATACAACTAGGACA+AGG - Chr7:723889-723908 None:intergenic 40.0%
CTACAGAAGAAAACCTCTCA+AGG + Chr7:722569-722588 MsG0780035966.01.T01:CDS 40.0%
CTCTTCTCATCACTGCTAAA+AGG + Chr7:722262-722281 MsG0780035966.01.T01:five_prime_UTR 40.0%
CTGAAAGAGGTTCTTCTTCA+TGG - Chr7:726425-726444 None:intergenic 40.0%
GAAAATGGCCCATGATTGAA+GGG - Chr7:723101-723120 None:intergenic 40.0%
GGTGTAATTGTTTGCATAGC+CGG + Chr7:723863-723882 MsG0780035966.01.T01:CDS 40.0%
GGTTGATTGGATGTACTACT+TGG + Chr7:725779-725798 MsG0780035966.01.T01:intron 40.0%
GTAAATGCAAGCCCATAAGT+AGG - Chr7:724560-724579 None:intergenic 40.0%
GTAGCAAACCCTTCAATCAT+GGG + Chr7:723090-723109 MsG0780035966.01.T01:intron 40.0%
GTCTGAATAGACGATGAGTT+TGG - Chr7:726125-726144 None:intergenic 40.0%
GTTCTTCAACAGCATTAGCA+GGG - Chr7:726278-726297 None:intergenic 40.0%
TAAACTCAGGATAAGCCTCT+TGG + Chr7:725133-725152 MsG0780035966.01.T01:intron 40.0%
TATTTCGTCTCACAGCTCAA+CGG + Chr7:725567-725586 MsG0780035966.01.T01:intron 40.0%
TCAGCATTGTCAATCGTGTT+GGG + Chr7:726036-726055 MsG0780035966.01.T01:intron 40.0%
TCCCAACAAGAAGAACAACA+AGG + Chr7:722166-722185 MsG0780035966.01.T01:five_prime_UTR 40.0%
TCGCAAGCTCTATCGAAAAA+TGG - Chr7:722668-722687 None:intergenic 40.0%
TGAATAGACGATGAGTTTGG+TGG - Chr7:726122-726141 None:intergenic 40.0%
TGACAGTGAGAGGAAAAACA+GGG - Chr7:723234-723253 None:intergenic 40.0%
TGCATTCAGTAATGTCAGTG+AGG + Chr7:724173-724192 MsG0780035966.01.T01:CDS 40.0%
TGCCCTGACACATAAAAAGA+TGG - Chr7:724415-724434 None:intergenic 40.0%
TGCCTTCACAACTGTTCATA+AGG - Chr7:723729-723748 None:intergenic 40.0%
TGTAGCAAACCCTTCAATCA+TGG + Chr7:723089-723108 MsG0780035966.01.T01:intron 40.0%
TGTCTTTCCATGATTGCCTA+TGG + Chr7:724534-724553 MsG0780035966.01.T01:intron 40.0%
TGTTGTTCTTCTTGTTGGGA+CGG - Chr7:722166-722185 None:intergenic 40.0%
TTCGTACCTTAAGCAGAACA+GGG - Chr7:725439-725458 None:intergenic 40.0%
TTGACAGTGAGAGGAAAAAC+AGG - Chr7:723235-723254 None:intergenic 40.0%
TTTAAACGGTTGACAGTGAG+AGG - Chr7:723244-723263 None:intergenic 40.0%
! CTTCATGGTTTTTCCTTGCA+TGG - Chr7:726410-726429 None:intergenic 40.0%
! GAATAGCCCATTTCTGAAAG+AGG - Chr7:726438-726457 None:intergenic 40.0%
! GAGCCATCTTTTTATGTGTC+AGG + Chr7:724409-724428 MsG0780035966.01.T01:intron 40.0%
! GTATTTTCGGATGTTCATGC+TGG + Chr7:723899-723918 MsG0780035966.01.T01:CDS 40.0%
! TTTGCTATGAGTTGCTGAAC+TGG - Chr7:726328-726347 None:intergenic 40.0%
!! ACAGAAGTGTTTGTGCTGTA+TGG - Chr7:722829-722848 None:intergenic 40.0%
!! ACTTCTTGGATTGGTTGATG+TGG + Chr7:723320-723339 MsG0780035966.01.T01:CDS 40.0%
AAATCTATTCACTGGTCGGC+TGG + Chr7:724955-724974 MsG0780035966.01.T01:CDS 45.0%
AAGTAGGCCATAGGCAATCA+TGG - Chr7:724544-724563 None:intergenic 45.0%
AATCTATTCACTGGTCGGCT+GGG + Chr7:724956-724975 MsG0780035966.01.T01:CDS 45.0%
AGAACCTGTTGCAATCAGAC+AGG + Chr7:726293-726312 MsG0780035966.01.T01:CDS 45.0%
CAGCATTGTCAATCGTGTTG+GGG + Chr7:726037-726056 MsG0780035966.01.T01:intron 45.0%
CATCTTCGCTTACCATGAGA+AGG + Chr7:725647-725666 MsG0780035966.01.T01:CDS 45.0%
CTCAGCATTGTCAATCGTGT+TGG + Chr7:726035-726054 MsG0780035966.01.T01:intron 45.0%
GAAGAGCTCATGGCAATGTT+AGG + Chr7:724785-724804 MsG0780035966.01.T01:CDS 45.0%
GAATAAGCAAGCACCTTGAG+AGG - Chr7:722585-722604 None:intergenic 45.0%
GATGTTTCGTCGTATTGCAG+AGG + Chr7:726231-726250 MsG0780035966.01.T01:intron 45.0%
GATTGCCTATGGCCTACTTA+TGG + Chr7:724545-724564 MsG0780035966.01.T01:intron 45.0%
GCAATGTTAGGTCTCTTTGG+TGG + Chr7:724797-724816 MsG0780035966.01.T01:CDS 45.0%
GGTGGAAGTAATGCTCGTTT+AGG + Chr7:724117-724136 MsG0780035966.01.T01:intron 45.0%
GGTTCTTCAACAGCATTAGC+AGG - Chr7:726279-726298 None:intergenic 45.0%
GTTACTGACAGACCTTCTCA+TGG - Chr7:725662-725681 None:intergenic 45.0%
TAAGACAGACCACATGTCTG+AGG - Chr7:725622-725641 None:intergenic 45.0%
TATAAAGCCACCTACCTGCA+CGG - Chr7:723928-723947 None:intergenic 45.0%
TCATCCTGTCTGATTGCAAC+AGG - Chr7:726300-726319 None:intergenic 45.0%
TCTAGTCCCTGTTCTGCTTA+AGG + Chr7:725430-725449 MsG0780035966.01.T01:CDS 45.0%
TGCTGATAGAGAAGAGCTCA+TGG + Chr7:724775-724794 MsG0780035966.01.T01:CDS 45.0%
TGCTTCTTGCATTGCACTCT+TGG - Chr7:726483-726502 None:intergenic 45.0%
TGGATGTACTACTTGGCGTT+TGG + Chr7:725786-725805 MsG0780035966.01.T01:CDS 45.0%
TGTTGCAATCAGACAGGATG+AGG + Chr7:726299-726318 MsG0780035966.01.T01:CDS 45.0%
TTCTTGCATTGCACTCTTGG+AGG - Chr7:726480-726499 None:intergenic 45.0%
! GTGTGATGTTACTTGACTGC+TGG + Chr7:723771-723790 MsG0780035966.01.T01:CDS 45.0%
! TCGTCGTATTGCAGAGGTTT+TGG + Chr7:726237-726256 MsG0780035966.01.T01:intron 45.0%
! TTTTCCTTGCATGGATCTCC+AGG - Chr7:726401-726420 None:intergenic 45.0%
AAGCAGCATGACGCATGGAA+TGG - Chr7:723798-723817 None:intergenic 50.0%
ATCTATTCACTGGTCGGCTG+GGG + Chr7:724957-724976 MsG0780035966.01.T01:CDS 50.0%
CAAGCCCATAAGTAGGCCAT+AGG - Chr7:724553-724572 None:intergenic 50.0%
CATGTAAGCAGCATGACGCA+TGG - Chr7:723803-723822 None:intergenic 50.0%
CTCTTCTGACCTCAGACATG+TGG + Chr7:725610-725629 MsG0780035966.01.T01:CDS 50.0%
GTCTGGGAGCTCAAAAACCT+GGG + Chr7:726356-726375 MsG0780035966.01.T01:CDS 50.0%
TAGACCTGGAGATCCATGCA+AGG + Chr7:726394-726413 MsG0780035966.01.T01:three_prime_UTR 50.0%
TGTCTGGGAGCTCAAAAACC+TGG + Chr7:726355-726374 MsG0780035966.01.T01:CDS 50.0%
! CATGCGTCATGCTGCTTACA+TGG + Chr7:723801-723820 MsG0780035966.01.T01:CDS 50.0%
! GGAGACGTTCTTGTTATCGC+TGG + Chr7:724138-724157 MsG0780035966.01.T01:CDS 50.0%
!! GCGTTTGGTGCTGTTGTCAT+TGG + Chr7:725801-725820 MsG0780035966.01.T01:CDS 50.0%
!!! TTGCAGAGGTTTTGGAGACG+AGG + Chr7:726245-726264 MsG0780035966.01.T01:intron 50.0%
ATGCTGGTGACCGTGCAGGT+AGG + Chr7:723915-723934 MsG0780035966.01.T01:intron 60.0%
GTTCATGCTGGTGACCGTGC+AGG + Chr7:723911-723930 MsG0780035966.01.T01:CDS 60.0%
CTGGTGACCGTGCAGGTAGG+TGG + Chr7:723918-723937 MsG0780035966.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 722093 726679 722093 ID=MsG0780035966.01;Name=MsG0780035966.01
Chr7 mRNA 722093 726679 722093 ID=MsG0780035966.01.T01;Parent=MsG0780035966.01;Name=MsG0780035966.01.T01;_AED=0.43;_eAED=0.43;_QI=268|1|1|1|0.7|0.63|11|293|288
Chr7 exon 722093 722313 722093 ID=MsG0780035966.01.T01:exon:2127;Parent=MsG0780035966.01.T01
Chr7 exon 722496 722590 722496 ID=MsG0780035966.01.T01:exon:2128;Parent=MsG0780035966.01.T01
Chr7 exon 723300 723357 723300 ID=MsG0780035966.01.T01:exon:2129;Parent=MsG0780035966.01.T01
Chr7 exon 723738 723932 723738 ID=MsG0780035966.01.T01:exon:2130;Parent=MsG0780035966.01.T01
Chr7 exon 724118 724194 724118 ID=MsG0780035966.01.T01:exon:2131;Parent=MsG0780035966.01.T01
Chr7 exon 724758 724840 724758 ID=MsG0780035966.01.T01:exon:2132;Parent=MsG0780035966.01.T01
Chr7 exon 724930 724981 724930 ID=MsG0780035966.01.T01:exon:2133;Parent=MsG0780035966.01.T01
Chr7 exon 725383 725451 725383 ID=MsG0780035966.01.T01:exon:2134;Parent=MsG0780035966.01.T01
Chr7 exon 725582 725668 725582 ID=MsG0780035966.01.T01:exon:2135;Parent=MsG0780035966.01.T01
Chr7 exon 725780 725841 725780 ID=MsG0780035966.01.T01:exon:2136;Parent=MsG0780035966.01.T01
Chr7 exon 726251 726679 726251 ID=MsG0780035966.01.T01:exon:2137;Parent=MsG0780035966.01.T01
Chr7 five_prime_UTR 722093 722313 722093 ID=MsG0780035966.01.T01:five_prime_utr;Parent=MsG0780035966.01.T01
Chr7 five_prime_UTR 722496 722542 722496 ID=MsG0780035966.01.T01:five_prime_utr;Parent=MsG0780035966.01.T01
Chr7 CDS 722543 722590 722543 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 723300 723357 723300 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 723738 723932 723738 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 724118 724194 724118 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 724758 724840 724758 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 724930 724981 724930 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 725383 725451 725383 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 725582 725668 725582 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 725780 725841 725780 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 CDS 726251 726386 726251 ID=MsG0780035966.01.T01:cds;Parent=MsG0780035966.01.T01
Chr7 three_prime_UTR 726387 726679 726387 ID=MsG0780035966.01.T01:three_prime_utr;Parent=MsG0780035966.01.T01
Gene Sequence

>MsG0780035966.01.T01

ATGATTGTCTATGGAACTATTCTACTCTACAGAAGAAAACCTCTCAAGGCGAAATGGTACTATTATATACTTCTTGGATTGGTTGATGTGGAAGCAAATTTTCTTGTTGTGAAGGCATATCAATACACCTCACTTACAAGTGTGATGTTACTTGACTGCTGGTCCATTCCATGCGTCATGCTGCTTACATGGATTTTCTTGAAAACAAAATATAGATTCAAGAAGATAACTGGTGTAATTGTTTGCATAGCCGGCCTTGTCCTAGTTGTATTTTCGGATGTTCATGCTGGTGACCGTGCAGGTGGAAGTAATGCTCGTTTAGGAGACGTTCTTGTTATCGCTGGCGCTACCTTGTATGCATTCAGTAATGTCAGTGAGGAGTTTTTAGTAAAAAATGCTGATAGAGAAGAGCTCATGGCAATGTTAGGTCTCTTTGGTGGCATCATCAGTGCCATTCAAATAGCTATACTTGAGCGCAATGAGCTTAAATCTATTCACTGGTCGGCTGGGGCAGCATTTCCTTTTTTTGGATTTTCTGTGGCTATGTTTTTGTTTTACTCTCTAGTCCCTGTTCTGCTTAAGCTCAACGGTTCTACTATGCTAAATCTGTCTCTTCTGACCTCAGACATGTGGTCTGTCTTAATTCGCATCTTCGCTTACCATGAGAAGGTTGATTGGATGTACTACTTGGCGTTTGGTGCTGTTGTCATTGGCATTGTTATCTACTCTATAGGTTTTGGAGACGAGGATCAACACCCTGCTAATGCTGTTGAAGAACCTGTTGCAATCAGACAGGATGAGGAAGCCAGTTCAGCAACTCATAGCAAAGGAAATGTGTCTGGGAGCTCAAAAACCTGGGTAGCTTAA
Protein sequence

>MsG0780035966.01.T01

MIVYGTILLYRRKPLKAKWYYYILLGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPCVMLLTWIFLKTKYRFKKITGVIVCIAGLVLVVFSDVHAGDRAGGSNARLGDVLVIAGATLYAFSNVSEEFLVKNADREELMAMLGLFGGIISAIQIAILERNELKSIHWSAGAAFPFFGFSVAMFLFYSLVPVLLKLNGSTMLNLSLLTSDMWSVLIRIFAYHEKVDWMYYLAFGAVVIGIVIYSIGFGDEDQHPANAVEEPVAIRQDEEASSATHSKGNVSGSSKTWVA*