AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011052.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011052.01.T01 MTR_2g098080 78.491 265 29 4 21 261 18 278 1.98e-138 400
MsG0280011052.01.T01 MTR_2g098080 93.902 82 5 0 261 342 364 445 1.12e-45 161
MsG0280011052.01.T01 MTR_1g098920 62.676 142 49 3 89 227 92 232 2.00e-52 179
MsG0280011052.01.T01 MTR_1g098920 47.826 69 36 0 245 313 381 449 3.83e-11 64.3
MsG0280011052.01.T01 MTR_6g035315 66.116 121 41 0 107 227 105 225 8.86e-45 160
MsG0280011052.01.T01 MTR_7g103390 55.634 142 57 3 87 227 73 209 1.95e-42 153
MsG0280011052.01.T01 MTR_1g061640 57.447 141 54 3 88 227 94 229 3.70e-42 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011052.01.T01 AT1G21200 59.859 142 55 1 86 227 83 222 4.19e-47 165
MsG0280011052.01.T01 AT1G21200 59.859 142 55 1 86 227 83 222 4.19e-47 165
MsG0280011052.01.T01 AT1G76870 58.156 141 45 4 88 227 60 187 3.70e-43 153
MsG0280011052.01.T01 AT1G76870 58.156 141 45 4 88 227 60 187 3.70e-43 153
MsG0280011052.01.T01 AT1G76870 58.156 141 45 4 88 227 60 187 3.70e-43 153
MsG0280011052.01.T01 AT3G10040 47.297 148 68 2 90 227 74 221 3.11e-30 119

Find 84 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCTTTGTCTTGATCTT+TGG 0.197813 2:-78912360 None:intergenic
GATGATAATAATAATCAAAT+TGG 0.250764 2:+78912810 MsG0280011052.01.T01:CDS
TGATCTTTGGCTTCGGAATA+TGG 0.307219 2:-78912347 None:intergenic
GCAAGTCAAGATCATGACTA+TGG 0.307746 2:-78913401 None:intergenic
ACCAATGGAGGTAGGGTCTA+AGG 0.337698 2:-78913925 None:intergenic
TATGAATATGATAACTGGTT+TGG 0.383314 2:+78912782 MsG0280011052.01.T01:CDS
TTTGTCTTGATCTTTGGCTT+CGG 0.386120 2:-78912354 None:intergenic
GGATAGGGAGCTGGAGAAGC+TGG 0.386271 2:+78913806 MsG0280011052.01.T01:CDS
CGGAATATGGCATGAGTTTG+AGG 0.401989 2:-78912334 None:intergenic
CTCTCCTGGTACTCATCAAC+AGG 0.405980 2:+78912418 MsG0280011052.01.T01:CDS
AAACATATGAATATGATAAC+TGG 0.406812 2:+78912777 MsG0280011052.01.T01:CDS
TCCTGCATTGATGGATTCAA+TGG 0.411710 2:+78913277 MsG0280011052.01.T01:CDS
GAGCATGGTTACGGAGAAGA+TGG 0.435266 2:+78912924 MsG0280011052.01.T01:CDS
TGCATAGTATTCGTTGGAAC+GGG 0.437833 2:+78913421 MsG0280011052.01.T01:CDS
GATGGTGTTAAGAAGAAATC+CGG 0.439201 2:+78913086 MsG0280011052.01.T01:CDS
ATCCGGGGTGTCACAGAAGA+AGG 0.448557 2:+78913103 MsG0280011052.01.T01:CDS
TGGTAGGGGAACTTGTTGTC+AGG 0.449451 2:+78913244 MsG0280011052.01.T01:CDS
GAAGACGATGAGCATGGTTA+CGG 0.454149 2:+78912915 MsG0280011052.01.T01:CDS
GTGAGTTGTGTTGGTGATGA+TGG 0.455421 2:+78913047 MsG0280011052.01.T01:CDS
GGTTGAGAATCCTGCATTGA+TGG 0.463782 2:+78913268 MsG0280011052.01.T01:CDS
GGAGAGATCAATGGAAGAGT+TGG 0.471584 2:-78912401 None:intergenic
GATACCGCAGCAAGAAGGAT+AGG 0.473004 2:+78913790 MsG0280011052.01.T01:CDS
TTCAGAAACAGCGGTTTAAG+TGG 0.489001 2:+78913763 MsG0280011052.01.T01:CDS
TTGACTTGCATAGTATTCGT+TGG 0.489161 2:+78913415 MsG0280011052.01.T01:CDS
ACCATTGAATCCATCAATGC+AGG 0.492133 2:-78913278 None:intergenic
ACTCTTCCATTGATCTCTCC+TGG 0.495173 2:+78912404 MsG0280011052.01.T01:CDS
TCTAAGATAATGATAAGTAA+AGG 0.502250 2:+78913143 MsG0280011052.01.T01:CDS
AAAGCTGAAGCAGAGAGATC+AGG 0.507837 2:+78913875 MsG0280011052.01.T01:CDS
TTGTGGCCTCTTGATACCAA+TGG 0.514883 2:-78913940 None:intergenic
TCCTTAGACCCTACCTCCAT+TGG 0.518261 2:+78913924 MsG0280011052.01.T01:CDS
GGTTGAATGAGATGCTTGGT+AGG 0.519981 2:+78913228 MsG0280011052.01.T01:CDS
AATGGTTAACTTGTCTGCTA+AGG 0.528317 2:+78913295 MsG0280011052.01.T01:CDS
GGTGATGATGGAACAATTAG+TGG 0.532799 2:+78913059 MsG0280011052.01.T01:CDS
TGCAATTTGAAAATGAGCAC+AGG 0.532921 2:+78913847 MsG0280011052.01.T01:CDS
CAGCAAGAAGGATAGGGAGC+TGG 0.539921 2:+78913797 MsG0280011052.01.T01:CDS
ATAGCAGTGGTGAGTTGTGT+TGG 0.551265 2:+78913038 MsG0280011052.01.T01:CDS
TAGGGGAACTTGTTGTCAGG+TGG 0.556404 2:+78913247 MsG0280011052.01.T01:CDS
TTGCATAGTATTCGTTGGAA+CGG 0.556751 2:+78913420 MsG0280011052.01.T01:CDS
GTTGAATGAGATGCTTGGTA+GGG 0.559093 2:+78913229 MsG0280011052.01.T01:CDS
TATCAAGAGGCCACAAGGGA+GGG 0.560647 2:+78913947 MsG0280011052.01.T01:CDS
TGAGTACCAGGAGAGATCAA+TGG 0.563917 2:-78912410 None:intergenic
ATACCGCAGCAAGAAGGATA+GGG 0.564239 2:+78913791 MsG0280011052.01.T01:CDS
TTGATATGTTCCCTCCCTTG+TGG 0.565958 2:-78913957 None:intergenic
GTCCACTTCATTCTCTGCCA+AGG 0.566514 2:-78912993 None:intergenic
ACTTGAATAAGAGATATAAG+AGG 0.568508 2:+78913207 MsG0280011052.01.T01:CDS
TGTCACAGAAGAAGGGTAAG+TGG 0.569426 2:+78913111 MsG0280011052.01.T01:CDS
TCTTGATACCAATGGAGGTA+GGG 0.573392 2:-78913932 None:intergenic
GGAGCTGGAGAAGCTGGCGA+TGG 0.574129 2:+78913812 MsG0280011052.01.T01:CDS
CAAGTCAAGATCATGACTAT+GGG 0.575280 2:-78913400 None:intergenic
AAGAGGTTGAATGAGATGCT+TGG 0.576189 2:+78913224 MsG0280011052.01.T01:CDS
ATCAGGAGGCAGAGTTCAGT+AGG 0.578594 2:+78913892 MsG0280011052.01.T01:CDS
CAACAGACTCAGTTAGCTCA+TGG 0.578956 2:+78912751 MsG0280011052.01.T01:CDS
ATGGTGTTAAGAAGAAATCC+GGG 0.579854 2:+78913087 MsG0280011052.01.T01:CDS
CTCTTGATACCAATGGAGGT+AGG 0.581041 2:-78913933 None:intergenic
TTGAATGAGATGCTTGGTAG+GGG 0.587060 2:+78913230 MsG0280011052.01.T01:CDS
ACCCTTCTTCTGTGACACCC+CGG 0.588573 2:-78913105 None:intergenic
GTTAAGATACCGCAGCAAGA+AGG 0.589509 2:+78913785 MsG0280011052.01.T01:CDS
TAACTTGTCTGCTAAGGCGA+AGG 0.599282 2:+78913301 MsG0280011052.01.T01:CDS
AATACCTGTTGATGAGTACC+AGG 0.601955 2:-78912422 None:intergenic
TGATGGAACAATTAGTGGTG+TGG 0.604354 2:+78913064 MsG0280011052.01.T01:CDS
AGTGGACGGATAATGTGGTT+GGG 0.610749 2:+78913009 MsG0280011052.01.T01:CDS
AAGTGGACGGATAATGTGGT+TGG 0.613391 2:+78913008 MsG0280011052.01.T01:CDS
GTATCAAGAGGCCACAAGGG+AGG 0.615865 2:+78913946 MsG0280011052.01.T01:CDS
AACTTATCCTCACACTGCTG+CGG 0.618536 2:-78913179 None:intergenic
CTACCTCCATTGGTATCAAG+AGG 0.620308 2:+78913934 MsG0280011052.01.T01:CDS
TAGTATTCGTTGGAACGGGA+AGG 0.620442 2:+78913425 MsG0280011052.01.T01:CDS
AGCATGGTTACGGAGAAGAT+GGG 0.623013 2:+78912925 MsG0280011052.01.T01:CDS
GGAACAATTAGTGGTGTGGA+TGG 0.625621 2:+78913068 MsG0280011052.01.T01:CDS
AATGAAGTGGACGGATAATG+TGG 0.631463 2:+78913004 MsG0280011052.01.T01:CDS
AGGGAGGGAACATATCAACT+TGG 0.631664 2:+78913962 MsG0280011052.01.T01:CDS
CTCCTTGGCAGAGAATGAAG+TGG 0.631774 2:+78912991 MsG0280011052.01.T01:CDS
TGTGTCGCCGCAGCAGTGTG+AGG 0.632288 2:+78913172 MsG0280011052.01.T01:CDS
GCTCCCTATCCTTCTTGCTG+CGG 0.632768 2:-78913794 None:intergenic
GGTTGGGCTTCTTATAGCAG+TGG 0.632989 2:+78913025 MsG0280011052.01.T01:CDS
ATTGGTATCAAGAGGCCACA+AGG 0.633070 2:+78913942 MsG0280011052.01.T01:CDS
ATGAGCGAAGACGATGAGCA+TGG 0.644222 2:+78912909 MsG0280011052.01.T01:CDS
GCTGAAGCAGAGAGATCAGG+AGG 0.645485 2:+78913878 MsG0280011052.01.T01:CDS
TTGGCAGAGAATGAAGTGGA+CGG 0.645694 2:+78912995 MsG0280011052.01.T01:CDS
TGGCCTCTTGATACCAATGG+AGG 0.649145 2:-78913937 None:intergenic
TCCGGGGTGTCACAGAAGAA+GGG 0.653871 2:+78913104 MsG0280011052.01.T01:CDS
GCTTTGAACTTCAGAAACAG+CGG 0.671973 2:+78913754 MsG0280011052.01.T01:CDS
TTGGTATCAAGAGGCCACAA+GGG 0.674612 2:+78913943 MsG0280011052.01.T01:CDS
TGGTGTTAAGAAGAAATCCG+GGG 0.737936 2:+78913088 MsG0280011052.01.T01:CDS
AAGGACTCAAGAGATCACGA+TGG 0.786747 2:+78913444 MsG0280011052.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGATAATAATAATCAAAT+TGG + Chr2:78912810-78912829 MsG0280011052.01.T01:CDS 15.0%
!! TTCATTTATTATTATGTCTT+CGG + Chr2:78912472-78912491 MsG0280011052.01.T01:intron 15.0%
!!! AAAAATTTGAATTTTGGTAA+AGG + Chr2:78912846-78912865 MsG0280011052.01.T01:CDS 15.0%
!! AAACATATGAATATGATAAC+TGG + Chr2:78912777-78912796 MsG0280011052.01.T01:CDS 20.0%
!! AATTGTGTTTCAATTATGAA+TGG + Chr2:78912646-78912665 MsG0280011052.01.T01:intron 20.0%
!! TGATAGAAATAAATTAAGTG+AGG + Chr2:78913571-78913590 MsG0280011052.01.T01:intron 20.0%
!!! GAAGTGAAAAATTTGAATTT+TGG + Chr2:78912840-78912859 MsG0280011052.01.T01:CDS 20.0%
!!! TCTAAGATAATGATAAGTAA+AGG + Chr2:78913143-78913162 MsG0280011052.01.T01:CDS 20.0%
! AACCCTAATTTCTAAATTCT+CGG - Chr2:78912624-78912643 None:intergenic 25.0%
! ACTTGAATAAGAGATATAAG+AGG + Chr2:78913207-78913226 MsG0280011052.01.T01:CDS 25.0%
! TAGAAATAAATTAAGTGAGG+AGG + Chr2:78913574-78913593 MsG0280011052.01.T01:intron 25.0%
! TATGAATATGATAACTGGTT+TGG + Chr2:78912782-78912801 MsG0280011052.01.T01:CDS 25.0%
!!! TTGAATTTTGGTAAAGGAAA+GGG + Chr2:78912852-78912871 MsG0280011052.01.T01:CDS 25.0%
!!! TTTGAATTTTGGTAAAGGAA+AGG + Chr2:78912851-78912870 MsG0280011052.01.T01:CDS 25.0%
AAAACAAAACAGCGCAAAAT+TGG - Chr2:78912512-78912531 None:intergenic 30.0%
AAACAAAACAGCGCAAAATT+GGG - Chr2:78912511-78912530 None:intergenic 30.0%
AATAAATTAAGTGAGGAGGA+TGG + Chr2:78913578-78913597 MsG0280011052.01.T01:intron 30.0%
AGTTTCTTTGTCTTGATCTT+TGG - Chr2:78912363-78912382 None:intergenic 30.0%
ATGAAGATAACAATGAAGTG+AGG + Chr2:78913481-78913500 MsG0280011052.01.T01:intron 30.0%
CACCGAGAATTTAGAAATTA+GGG + Chr2:78912619-78912638 MsG0280011052.01.T01:intron 30.0%
GGAATTAATATTAATGCACG+TGG + Chr2:78913521-78913540 MsG0280011052.01.T01:intron 30.0%
TCAATTATGAATGGTTCTTC+TGG + Chr2:78912655-78912674 MsG0280011052.01.T01:intron 30.0%
! GTTTGAGGTGTAAAGAAAAA+AGG - Chr2:78912322-78912341 None:intergenic 30.0%
!!! AATTGCGAGAATTTTTTCGA+TGG + Chr2:78912948-78912967 MsG0280011052.01.T01:CDS 30.0%
AAACTGAAATTCCGTACTAC+TGG - Chr2:78912589-78912608 None:intergenic 35.0%
AACTGAAATTCCGTACTACT+GGG - Chr2:78912588-78912607 None:intergenic 35.0%
AATATTAATGCACGTGGTGA+TGG + Chr2:78913527-78913546 MsG0280011052.01.T01:intron 35.0%
ACCTTGAATCTCCATTTCAT+AGG + Chr2:78912722-78912741 MsG0280011052.01.T01:intron 35.0%
CAAGTCAAGATCATGACTAT+GGG - Chr2:78913403-78913422 None:intergenic 35.0%
GAAGAAACTTGAGAGTGAAA+TGG + Chr2:78913628-78913647 MsG0280011052.01.T01:intron 35.0%
GCACCGAGAATTTAGAAATT+AGG + Chr2:78912618-78912637 MsG0280011052.01.T01:intron 35.0%
TGCAATTTGAAAATGAGCAC+AGG + Chr2:78913847-78913866 MsG0280011052.01.T01:CDS 35.0%
TGTTGTTGATGCCTATGAAA+TGG - Chr2:78912736-78912755 None:intergenic 35.0%
TTGCATAGTATTCGTTGGAA+CGG + Chr2:78913420-78913439 MsG0280011052.01.T01:CDS 35.0%
! ATGGTGTTAAGAAGAAATCC+GGG + Chr2:78913087-78913106 MsG0280011052.01.T01:CDS 35.0%
! GATGGTGTTAAGAAGAAATC+CGG + Chr2:78913086-78913105 MsG0280011052.01.T01:CDS 35.0%
! TATGAATGGTTCTTCTGGTT+TGG + Chr2:78912660-78912679 MsG0280011052.01.T01:intron 35.0%
! TTTCAGTTTTCCCAGTAGTA+CGG + Chr2:78912575-78912594 MsG0280011052.01.T01:intron 35.0%
! TTTGTCTTGATCTTTGGCTT+CGG - Chr2:78912357-78912376 None:intergenic 35.0%
!! AATGGTTAACTTGTCTGCTA+AGG + Chr2:78913295-78913314 MsG0280011052.01.T01:CDS 35.0%
!! ATGAATGGTTCTTCTGGTTT+GGG + Chr2:78912661-78912680 MsG0280011052.01.T01:intron 35.0%
!! TTGACTTGCATAGTATTCGT+TGG + Chr2:78913415-78913434 MsG0280011052.01.T01:CDS 35.0%
!!! AATTTTTTCGATGGTGGGAA+GGG + Chr2:78912957-78912976 MsG0280011052.01.T01:CDS 35.0%
AACTTGAGAGTGAAATGGCA+AGG + Chr2:78913633-78913652 MsG0280011052.01.T01:intron 40.0%
AAGAGGTTGAATGAGATGCT+TGG + Chr2:78913224-78913243 MsG0280011052.01.T01:CDS 40.0%
AATGAAGTGGACGGATAATG+TGG + Chr2:78913004-78913023 MsG0280011052.01.T01:CDS 40.0%
ACAGCGCAAAATTGGGAAAA+AGG - Chr2:78912504-78912523 None:intergenic 40.0%
ACCATTGAATCCATCAATGC+AGG - Chr2:78913281-78913300 None:intergenic 40.0%
ACTTGAGAGTGAAATGGCAA+GGG + Chr2:78913634-78913653 MsG0280011052.01.T01:intron 40.0%
ATGAAGTGAGGATGATGAGT+TGG + Chr2:78913493-78913512 MsG0280011052.01.T01:intron 40.0%
GAAATGTGTGCATACCACAA+TGG + Chr2:78913367-78913386 MsG0280011052.01.T01:intron 40.0%
GCAAGTCAAGATCATGACTA+TGG - Chr2:78913404-78913423 None:intergenic 40.0%
GCCTATGAAATGGAGATTCA+AGG - Chr2:78912726-78912745 None:intergenic 40.0%
GTTGAATGAGATGCTTGGTA+GGG + Chr2:78913229-78913248 MsG0280011052.01.T01:CDS 40.0%
TCTTGATACCAATGGAGGTA+GGG - Chr2:78913935-78913954 None:intergenic 40.0%
TGATGGAACAATTAGTGGTG+TGG + Chr2:78913064-78913083 MsG0280011052.01.T01:CDS 40.0%
TGCATAGTATTCGTTGGAAC+GGG + Chr2:78913421-78913440 MsG0280011052.01.T01:CDS 40.0%
TTCAGAAACAGCGGTTTAAG+TGG + Chr2:78913763-78913782 MsG0280011052.01.T01:CDS 40.0%
TTGAATGAGATGCTTGGTAG+GGG + Chr2:78913230-78913249 MsG0280011052.01.T01:CDS 40.0%
! AATACCTGTTGATGAGTACC+AGG - Chr2:78912425-78912444 None:intergenic 40.0%
! GAGGATGATGAGTTGGATAA+TGG + Chr2:78913500-78913519 MsG0280011052.01.T01:intron 40.0%
! GCTTTGAACTTCAGAAACAG+CGG + Chr2:78913754-78913773 MsG0280011052.01.T01:CDS 40.0%
! TGATCTTTGGCTTCGGAATA+TGG - Chr2:78912350-78912369 None:intergenic 40.0%
! TGGTGTTAAGAAGAAATCCG+GGG + Chr2:78913088-78913107 MsG0280011052.01.T01:CDS 40.0%
!! AAAATGTTGACTTCCAAGCC+AGG + Chr2:78913731-78913750 MsG0280011052.01.T01:intron 40.0%
!! AAATGTTGACTTCCAAGCCA+GGG + Chr2:78913732-78913751 MsG0280011052.01.T01:intron 40.0%
!! GGAGAAAAGAGAGTGGATTA+AGG + Chr2:78913685-78913704 MsG0280011052.01.T01:intron 40.0%
!! GGTGATGATGGAACAATTAG+TGG + Chr2:78913059-78913078 MsG0280011052.01.T01:CDS 40.0%
!! TCCTGCATTGATGGATTCAA+TGG + Chr2:78913277-78913296 MsG0280011052.01.T01:CDS 40.0%
!!! ATTTTTTCGATGGTGGGAAG+GGG + Chr2:78912958-78912977 MsG0280011052.01.T01:CDS 40.0%
!!! GAATTTTTTCGATGGTGGGA+AGG + Chr2:78912956-78912975 MsG0280011052.01.T01:CDS 40.0%
!!! GCGAGAATTTTTTCGATGGT+GGG + Chr2:78912952-78912971 MsG0280011052.01.T01:CDS 40.0%
!!! TGCGAGAATTTTTTCGATGG+TGG + Chr2:78912951-78912970 MsG0280011052.01.T01:CDS 40.0%
AAAGCTGAAGCAGAGAGATC+AGG + Chr2:78913875-78913894 MsG0280011052.01.T01:CDS 45.0%
AACTTATCCTCACACTGCTG+CGG - Chr2:78913182-78913201 None:intergenic 45.0%
AAGGACTCAAGAGATCACGA+TGG + Chr2:78913444-78913463 MsG0280011052.01.T01:CDS 45.0%
AAGTGGACGGATAATGTGGT+TGG + Chr2:78913008-78913027 MsG0280011052.01.T01:CDS 45.0%
ACTCTTCCATTGATCTCTCC+TGG + Chr2:78912404-78912423 MsG0280011052.01.T01:CDS 45.0%
AGCATGGTTACGGAGAAGAT+GGG + Chr2:78912925-78912944 MsG0280011052.01.T01:CDS 45.0%
AGGGAGGGAACATATCAACT+TGG + Chr2:78913962-78913981 MsG0280011052.01.T01:CDS 45.0%
AGTGGACGGATAATGTGGTT+GGG + Chr2:78913009-78913028 MsG0280011052.01.T01:CDS 45.0%
ATACCGCAGCAAGAAGGATA+GGG + Chr2:78913791-78913810 MsG0280011052.01.T01:CDS 45.0%
ATAGCAGTGGTGAGTTGTGT+TGG + Chr2:78913038-78913057 MsG0280011052.01.T01:CDS 45.0%
ATTGGTATCAAGAGGCCACA+AGG + Chr2:78913942-78913961 MsG0280011052.01.T01:CDS 45.0%
CAACAGACTCAGTTAGCTCA+TGG + Chr2:78912751-78912770 MsG0280011052.01.T01:CDS 45.0%
CGGAATATGGCATGAGTTTG+AGG - Chr2:78912337-78912356 None:intergenic 45.0%
CTACCTCCATTGGTATCAAG+AGG + Chr2:78913934-78913953 MsG0280011052.01.T01:CDS 45.0%
CTCTTGATACCAATGGAGGT+AGG - Chr2:78913936-78913955 None:intergenic 45.0%
GAAGACGATGAGCATGGTTA+CGG + Chr2:78912915-78912934 MsG0280011052.01.T01:CDS 45.0%
GGAACAATTAGTGGTGTGGA+TGG + Chr2:78913068-78913087 MsG0280011052.01.T01:CDS 45.0%
GGAGAGATCAATGGAAGAGT+TGG - Chr2:78912404-78912423 None:intergenic 45.0%
GGTTGAATGAGATGCTTGGT+AGG + Chr2:78913228-78913247 MsG0280011052.01.T01:CDS 45.0%
GGTTGAGAATCCTGCATTGA+TGG + Chr2:78913268-78913287 MsG0280011052.01.T01:CDS 45.0%
GTGCATACCACAATGGTCAA+AGG + Chr2:78913374-78913393 MsG0280011052.01.T01:intron 45.0%
GTTAAGATACCGCAGCAAGA+AGG + Chr2:78913785-78913804 MsG0280011052.01.T01:CDS 45.0%
TAGTATTCGTTGGAACGGGA+AGG + Chr2:78913425-78913444 MsG0280011052.01.T01:CDS 45.0%
TGAGTACCAGGAGAGATCAA+TGG - Chr2:78912413-78912432 None:intergenic 45.0%
TGGGTATCCTTTGACCATTG+TGG - Chr2:78913384-78913403 None:intergenic 45.0%
TGTCACAGAAGAAGGGTAAG+TGG + Chr2:78913111-78913130 MsG0280011052.01.T01:CDS 45.0%
TTCTTCATCCCACTAGACTG+CGG - Chr2:78913614-78913633 None:intergenic 45.0%
TTGATATGTTCCCTCCCTTG+TGG - Chr2:78913960-78913979 None:intergenic 45.0%
TTGGCAGAGAATGAAGTGGA+CGG + Chr2:78912995-78913014 MsG0280011052.01.T01:CDS 45.0%
TTGGTATCAAGAGGCCACAA+GGG + Chr2:78913943-78913962 MsG0280011052.01.T01:CDS 45.0%
TTGTGGCCTCTTGATACCAA+TGG - Chr2:78913943-78913962 None:intergenic 45.0%
! ATCCACTCTCTTTTCTCCCA+CGG - Chr2:78913683-78913702 None:intergenic 45.0%
! ATGGTGGGAAGGGGAAAAAA+GGG + Chr2:78912967-78912986 MsG0280011052.01.T01:CDS 45.0%
! TAACTTGTCTGCTAAGGCGA+AGG + Chr2:78913301-78913320 MsG0280011052.01.T01:CDS 45.0%
!! AATGGTTCTTCTGGTTTGGG+TGG + Chr2:78912664-78912683 MsG0280011052.01.T01:intron 45.0%
!! ATTAATGCACGTGGTGATGG+AGG + Chr2:78913530-78913549 MsG0280011052.01.T01:intron 45.0%
!! GTGAGTTGTGTTGGTGATGA+TGG + Chr2:78913047-78913066 MsG0280011052.01.T01:CDS 45.0%
!! GTTTCTGAAGTTCAAAGCCC+TGG - Chr2:78913752-78913771 None:intergenic 45.0%
!! TTAATGCACGTGGTGATGGA+GGG + Chr2:78913531-78913550 MsG0280011052.01.T01:intron 45.0%
AAGGTCCAAAATACCCCCAG+CGG - Chr2:78912707-78912726 None:intergenic 50.0%
ACCAATGGAGGTAGGGTCTA+AGG - Chr2:78913928-78913947 None:intergenic 50.0%
AGGGGAAAAAAGGGTCTCCT+TGG + Chr2:78912976-78912995 MsG0280011052.01.T01:CDS 50.0%
ATCAGGAGGCAGAGTTCAGT+AGG + Chr2:78913892-78913911 MsG0280011052.01.T01:CDS 50.0%
ATGAGCGAAGACGATGAGCA+TGG + Chr2:78912909-78912928 MsG0280011052.01.T01:CDS 50.0%
CTCCTTGGCAGAGAATGAAG+TGG + Chr2:78912991-78913010 MsG0280011052.01.T01:CDS 50.0%
CTCTCCTGGTACTCATCAAC+AGG + Chr2:78912418-78912437 MsG0280011052.01.T01:CDS 50.0%
GAGCATGGTTACGGAGAAGA+TGG + Chr2:78912924-78912943 MsG0280011052.01.T01:CDS 50.0%
GATACCGCAGCAAGAAGGAT+AGG + Chr2:78913790-78913809 MsG0280011052.01.T01:CDS 50.0%
GGTTGGGCTTCTTATAGCAG+TGG + Chr2:78913025-78913044 MsG0280011052.01.T01:CDS 50.0%
GTCCACTTCATTCTCTGCCA+AGG - Chr2:78912996-78913015 None:intergenic 50.0%
TATCAAGAGGCCACAAGGGA+GGG + Chr2:78913947-78913966 MsG0280011052.01.T01:CDS 50.0%
TCCTTAGACCCTACCTCCAT+TGG + Chr2:78913924-78913943 MsG0280011052.01.T01:CDS 50.0%
TGAAGTTCAAAGCCCTGGCT+TGG - Chr2:78913747-78913766 None:intergenic 50.0%
TGGCCTCTTGATACCAATGG+AGG - Chr2:78913940-78913959 None:intergenic 50.0%
! ACTTTTGGCCGCAGTCTAGT+GGG + Chr2:78913603-78913622 MsG0280011052.01.T01:intron 50.0%
! GTGATGGAGGGAGAATGGAA+GGG + Chr2:78913543-78913562 MsG0280011052.01.T01:intron 50.0%
!! GATGGTGGGAAGGGGAAAAA+AGG + Chr2:78912966-78912985 MsG0280011052.01.T01:CDS 50.0%
!! GTTCTTCTGGTTTGGGTGGT+GGG + Chr2:78912668-78912687 MsG0280011052.01.T01:intron 50.0%
!! TAGGGGAACTTGTTGTCAGG+TGG + Chr2:78913247-78913266 MsG0280011052.01.T01:CDS 50.0%
!! TGGTAGGGGAACTTGTTGTC+AGG + Chr2:78913244-78913263 MsG0280011052.01.T01:CDS 50.0%
!!! TTGGGTGGTGGGTTTTTGAG+TGG + Chr2:78912679-78912698 MsG0280011052.01.T01:intron 50.0%
AAGACCCTGCAAAGTCTCCG+TGG + Chr2:78913663-78913682 MsG0280011052.01.T01:intron 55.0%
ACCCTTCTTCTGTGACACCC+CGG - Chr2:78913108-78913127 None:intergenic 55.0%
AGACCCTGCAAAGTCTCCGT+GGG + Chr2:78913664-78913683 MsG0280011052.01.T01:intron 55.0%
AGGTCCAAAATACCCCCAGC+GGG - Chr2:78912706-78912725 None:intergenic 55.0%
CACTAGACTGCGGCCAAAAG+TGG - Chr2:78913604-78913623 None:intergenic 55.0%
CAGCAAGAAGGATAGGGAGC+TGG + Chr2:78913797-78913816 MsG0280011052.01.T01:CDS 55.0%
CTCCGTGGGAGAAAAGAGAG+TGG + Chr2:78913678-78913697 MsG0280011052.01.T01:intron 55.0%
GCTCCCTATCCTTCTTGCTG+CGG - Chr2:78913797-78913816 None:intergenic 55.0%
GCTGAAGCAGAGAGATCAGG+AGG + Chr2:78913878-78913897 MsG0280011052.01.T01:CDS 55.0%
GTATCAAGAGGCCACAAGGG+AGG + Chr2:78913946-78913965 MsG0280011052.01.T01:CDS 55.0%
TCTCCCACGGAGACTTTGCA+GGG - Chr2:78913670-78913689 None:intergenic 55.0%
TTCTCCCACGGAGACTTTGC+AGG - Chr2:78913671-78913690 None:intergenic 55.0%
! ATCCGGGGTGTCACAGAAGA+AGG + Chr2:78913103-78913122 MsG0280011052.01.T01:CDS 55.0%
! CACTTTTGGCCGCAGTCTAG+TGG + Chr2:78913602-78913621 MsG0280011052.01.T01:intron 55.0%
! TCCGGGGTGTCACAGAAGAA+GGG + Chr2:78913104-78913123 MsG0280011052.01.T01:CDS 55.0%
!! ACGTGGTGATGGAGGGAGAA+TGG + Chr2:78913538-78913557 MsG0280011052.01.T01:intron 55.0%
!! GGTGATGGAGGGAGAATGGA+AGG + Chr2:78913542-78913561 MsG0280011052.01.T01:intron 55.0%
!! GGTTCTTCTGGTTTGGGTGG+TGG + Chr2:78912667-78912686 MsG0280011052.01.T01:intron 55.0%
!! GTGAGGAGGATGGCCACTTT+TGG + Chr2:78913588-78913607 MsG0280011052.01.T01:intron 55.0%
!!! GGTTTTTGAGTGGTCCCGCT+GGG + Chr2:78912689-78912708 MsG0280011052.01.T01:intron 55.0%
!!! GTTTTTGAGTGGTCCCGCTG+GGG + Chr2:78912690-78912709 MsG0280011052.01.T01:intron 55.0%
!!! TTTTTGAGTGGTCCCGCTGG+GGG + Chr2:78912691-78912710 MsG0280011052.01.T01:intron 55.0%
GGATAGGGAGCTGGAGAAGC+TGG + Chr2:78913806-78913825 MsG0280011052.01.T01:CDS 60.0%
!!! GGGTTTTTGAGTGGTCCCGC+TGG + Chr2:78912688-78912707 MsG0280011052.01.T01:intron 60.0%
!!! TGGTCCCGCTGGGGGTATTT+TGG + Chr2:78912699-78912718 MsG0280011052.01.T01:intron 60.0%
GGAGCTGGAGAAGCTGGCGA+TGG + Chr2:78913812-78913831 MsG0280011052.01.T01:CDS 65.0%
TGTGTCGCCGCAGCAGTGTG+AGG + Chr2:78913172-78913191 MsG0280011052.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 78912312 78913998 78912312 ID=MsG0280011052.01;Name=MsG0280011052.01
Chr2 mRNA 78912312 78913998 78912312 ID=MsG0280011052.01.T01;Parent=MsG0280011052.01;Name=MsG0280011052.01.T01;_AED=0.20;_eAED=0.23;_QI=32|0|0.25|1|1|1|4|0|342
Chr2 exon 78912312 78912439 78912312 ID=MsG0280011052.01.T01:exon:17370;Parent=MsG0280011052.01.T01
Chr2 exon 78912744 78913328 78912744 ID=MsG0280011052.01.T01:exon:17371;Parent=MsG0280011052.01.T01
Chr2 exon 78913396 78913497 78913396 ID=MsG0280011052.01.T01:exon:17372;Parent=MsG0280011052.01.T01
Chr2 exon 78913753 78913998 78913753 ID=MsG0280011052.01.T01:exon:17373;Parent=MsG0280011052.01.T01
Chr2 five_prime_UTR 78912312 78912343 78912312 ID=MsG0280011052.01.T01:five_prime_utr;Parent=MsG0280011052.01.T01
Chr2 CDS 78912344 78912439 78912344 ID=MsG0280011052.01.T01:cds;Parent=MsG0280011052.01.T01
Chr2 CDS 78912744 78913328 78912744 ID=MsG0280011052.01.T01:cds;Parent=MsG0280011052.01.T01
Chr2 CDS 78913396 78913497 78913396 ID=MsG0280011052.01.T01:cds;Parent=MsG0280011052.01.T01
Chr2 CDS 78913753 78913998 78913753 ID=MsG0280011052.01.T01:cds;Parent=MsG0280011052.01.T01
Gene Sequence

>MsG0280011052.01.T01

ATGCCATATTCCGAAGCCAAAGATCAAGACAAAGAAACTGACAAGTACGAAGAAACTCCAACTCTTCCATTGATCTCTCCTGGTACTCATCAACAGGCATCAACAACAGACTCAGTTAGCTCATGGTCAAAACATATGAATATGATAACTGGTTTGGAAAATGATGATAATAATAATCAAATTGGTTTAATTGAAGTGAAAAATTTGAATTTTGGTAAAGGAAAGGGAGTTGCTAGTTCTAATCATGATAATAGTAATGATATGAGCGAAGACGATGAGCATGGTTACGGAGAAGATGGGAATTGCGAGAATTTTTTCGATGGTGGGAAGGGGAAAAAAGGGTCTCCTTGGCAGAGAATGAAGTGGACGGATAATGTGGTTGGGCTTCTTATAGCAGTGGTGAGTTGTGTTGGTGATGATGGAACAATTAGTGGTGTGGATGGTGTTAAGAAGAAATCCGGGGTGTCACAGAAGAAGGGTAAGTGGAAAACTGTTTCTAAGATAATGATAAGTAAAGGTTGTCATGTGTCGCCGCAGCAGTGTGAGGATAAGTTCAATGACTTGAATAAGAGATATAAGAGGTTGAATGAGATGCTTGGTAGGGGAACTTGTTGTCAGGTGGTTGAGAATCCTGCATTGATGGATTCAATGGTTAACTTGTCTGCTAAGGCGAAGGATGATGATACCCATAGTCATGATCTTGACTTGCATAGTATTCGTTGGAACGGGAAGGACTCAAGAGATCACGATGGCTCTGATGATGAAGATGAAGATAACAATGAAGGCTTTGAACTTCAGAAACAGCGGTTTAAGTGGTTAAGATACCGCAGCAAGAAGGATAGGGAGCTGGAGAAGCTGGCGATGGAGAACAAGAGAATGCAATTTGAAAATGAGCACAGGATCTTAAAGCTGAAGCAGAGAGATCAGGAGGCAGAGTTCAGTAGGTCTGAGATGTCCTTAGACCCTACCTCCATTGGTATCAAGAGGCCACAAGGGAGGGAACATATCAACTTGGCTAGACAGCACTAG

Protein sequence

>MsG0280011052.01.T01

MPYSEAKDQDKETDKYEETPTLPLISPGTHQQASTTDSVSSWSKHMNMITGLENDDNNNQIGLIEVKNLNFGKGKGVASSNHDNSNDMSEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGDDGTISGVDGVKKKSGVSQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEMLGRGTCCQVVENPALMDSMVNLSAKAKDDDTHSHDLDLHSIRWNGKDSRDHDGSDDEDEDNNEGFELQKQRFKWLRYRSKKDRELEKLAMENKRMQFENEHRILKLKQRDQEAEFSRSEMSLDPTSIGIKRPQGREHINLARQH*