AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025555.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025555.01.T01 MTR_5g030430 95.168 683 21 3 1 677 1 677 0.0 1331
MsG0580025555.01.T01 MTR_8g067280 60.405 692 210 17 2 677 3 646 0.0 747
MsG0580025555.01.T01 MTR_5g030420 83.843 229 36 1 21 248 4 232 1.88e-137 402
MsG0580025555.01.T01 MTR_5g030420 81.277 235 43 1 21 254 4 238 3.46e-137 402
MsG0580025555.01.T01 MTR_8g024790 50.495 202 89 4 474 674 272 463 5.40e-54 192
MsG0580025555.01.T01 MTR_8g024790 32.796 186 92 2 44 225 25 181 4.78e-30 124
MsG0580025555.01.T01 MTR_8g024770 52.475 202 87 4 474 673 260 454 1.33e-53 191
MsG0580025555.01.T01 MTR_8g024770 30.319 188 83 3 58 236 36 184 6.02e-25 108
MsG0580025555.01.T01 MTR_7g096350 43.541 209 79 3 466 670 328 501 9.16e-42 159
MsG0580025555.01.T01 MTR_7g096350 28.723 188 118 5 44 225 49 226 3.87e-14 75.9
MsG0580025555.01.T01 MTR_8g027495 42.437 238 107 6 441 670 402 617 3.04e-37 147
MsG0580025555.01.T01 MTR_7g117670 40.249 241 118 6 441 677 350 568 1.23e-35 142
MsG0580025555.01.T01 MTR_7g117670 27.755 245 152 4 3 227 8 247 1.38e-22 102
MsG0580025555.01.T01 MTR_1g072320 33.684 190 105 6 45 225 11 188 1.62e-24 109
MsG0580025555.01.T01 MTR_1g072320 31.217 189 116 4 471 655 451 629 6.56e-18 88.2
MsG0580025555.01.T01 MTR_8g098275 34.104 173 94 6 60 222 19 181 6.20e-22 100
MsG0580025555.01.T01 MTR_8g098275 46.377 69 35 1 489 555 397 465 1.64e-11 67.8
MsG0580025555.01.T01 MTR_5g014640 34.177 158 86 3 482 639 147 286 1.34e-18 87.8
MsG0580025555.01.T01 MTR_2g104490 24.797 246 160 4 395 640 51 271 2.42e-16 80.9
MsG0580025555.01.T01 MTR_2g104490 24.797 246 160 4 395 640 51 271 2.44e-16 80.5
MsG0580025555.01.T01 MTR_4g067010 31.707 164 89 5 480 640 137 280 3.20e-16 80.9
MsG0580025555.01.T01 MTR_3g498695 32.632 190 116 6 491 674 296 479 3.34e-16 82.4
MsG0580025555.01.T01 MTR_4g057270 30.488 164 100 4 483 645 142 292 5.57e-16 80.1
MsG0580025555.01.T01 MTR_2g010450 27.313 227 128 7 421 639 116 313 6.73e-16 80.1
MsG0580025555.01.T01 MTR_3g498695 31.414 191 118 6 491 674 296 480 2.32e-15 79.7
MsG0580025555.01.T01 MTR_0250s0040 31.056 161 100 2 493 653 88 237 2.51e-15 77.0
MsG0580025555.01.T01 MTR_4g092700 31.579 152 87 2 491 639 156 293 4.33e-15 77.4
MsG0580025555.01.T01 MTR_4g066460 27.753 227 127 5 414 640 99 288 4.99e-15 77.4
MsG0580025555.01.T01 MTR_3g030700 32.386 176 93 4 481 646 184 343 5.37e-15 77.8
MsG0580025555.01.T01 MTR_0246s0020 29.947 187 107 4 479 659 190 358 5.76e-15 77.8
MsG0580025555.01.T01 MTR_0194s0050 26.728 217 130 6 470 663 159 369 6.10e-15 77.8
MsG0580025555.01.T01 MTR_4g066380 28.155 206 113 4 435 640 115 285 8.60e-15 76.6
MsG0580025555.01.T01 MTR_2g038040 32.026 153 96 3 494 641 53 202 9.70e-15 74.7
MsG0580025555.01.T01 MTR_4g009110 31.098 164 97 4 481 640 162 313 2.64e-14 75.5
MsG0580025555.01.T01 MTR_4g097950 33.600 125 77 2 493 616 70 189 4.27e-14 73.2
MsG0580025555.01.T01 MTR_2g084280 30.864 162 93 6 497 655 137 282 4.48e-14 74.3
MsG0580025555.01.T01 MTR_3g104100 29.834 181 112 5 497 669 199 372 5.09e-14 74.7
MsG0580025555.01.T01 MTR_2g081040 31.122 196 100 6 497 674 181 359 5.57e-14 74.3
MsG0580025555.01.T01 MTR_0246s0020 30.952 168 92 4 479 640 190 339 6.90e-14 74.3
MsG0580025555.01.T01 MTR_2g104550 28.000 175 110 3 469 640 114 275 7.45e-14 73.6
MsG0580025555.01.T01 MTR_4g009540 30.286 175 87 5 479 640 142 294 8.41e-14 73.2
MsG0580025555.01.T01 MTR_4g009540 30.286 175 87 5 479 640 142 294 9.52e-14 73.6
MsG0580025555.01.T01 MTR_5g014520 29.697 165 103 3 476 640 142 293 1.08e-13 73.2
MsG0580025555.01.T01 MTR_1g112680 27.650 217 132 7 472 669 301 511 1.24e-13 74.3
MsG0580025555.01.T01 MTR_0011s0260 30.508 177 79 6 493 650 183 334 1.28e-13 73.2
MsG0580025555.01.T01 MTR_0011s0210 27.778 162 78 3 493 640 183 319 2.71e-13 72.4
MsG0580025555.01.T01 MTR_6g047570 32.903 155 79 4 493 640 159 295 3.47e-13 71.6
MsG0580025555.01.T01 MTR_5g014600 26.009 223 134 6 463 670 115 321 6.38e-13 70.9
MsG0580025555.01.T01 MTR_4g097940 31.034 174 84 7 474 640 140 284 9.28e-13 70.5
MsG0580025555.01.T01 MTR_8g064700 29.282 181 107 6 475 649 234 399 9.96e-13 71.2
MsG0580025555.01.T01 MTR_7g110810 29.016 193 133 2 352 543 73 262 1.64e-12 70.1
MsG0580025555.01.T01 MTR_8g066770 27.841 176 114 3 492 659 114 284 2.79e-12 68.6
MsG0580025555.01.T01 MTR_7g083900 55.769 52 23 0 491 542 284 335 3.86e-12 69.3
MsG0580025555.01.T01 MTR_7g083900 55.769 52 23 0 491 542 284 335 3.92e-12 69.3
MsG0580025555.01.T01 MTR_5g064950 27.230 213 130 8 477 669 78 285 5.44e-12 67.8
MsG0580025555.01.T01 MTR_6g047550 55.556 54 24 0 493 546 173 226 6.74e-12 67.0
MsG0580025555.01.T01 MTR_8g098275 47.761 67 33 1 489 553 240 306 1.00e-11 68.2
MsG0580025555.01.T01 MTR_2g104560 30.263 152 83 4 494 640 55 188 1.17e-11 65.5
MsG0580025555.01.T01 MTR_8g098275 46.377 69 35 1 489 555 304 372 1.19e-11 68.2
MsG0580025555.01.T01 MTR_5g030770 28.814 177 99 4 481 652 141 295 1.88e-11 66.2
MsG0580025555.01.T01 MTR_5g014560 29.412 153 97 1 493 645 131 272 2.00e-11 65.9
MsG0580025555.01.T01 MTR_4g097920 30.952 168 89 7 479 640 138 284 2.27e-11 66.2
MsG0580025555.01.T01 MTR_4g097920 31.788 151 79 6 493 640 140 269 2.29e-11 65.9
MsG0580025555.01.T01 MTR_4g094762 29.412 187 120 4 494 676 293 471 3.38e-11 66.6
MsG0580025555.01.T01 MTR_8g009020 26.437 174 106 4 477 640 125 286 4.13e-11 65.5
MsG0580025555.01.T01 MTR_1g028470 26.190 210 120 5 476 656 71 274 5.19e-11 64.7
MsG0580025555.01.T01 MTR_0246s0050 28.188 149 77 4 493 635 151 275 7.28e-11 64.3
MsG0580025555.01.T01 MTR_5g030770 29.143 175 95 4 481 652 141 289 9.49e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025555.01.T01 AT1G32640 52.408 706 212 21 1 674 10 623 0.0 617
MsG0580025555.01.T01 AT5G46760 49.927 685 226 17 3 675 11 590 0.0 533
MsG0580025555.01.T01 AT4G17880 64.925 268 63 6 410 676 351 588 2.16e-105 332
MsG0580025555.01.T01 AT4G17880 58.303 271 99 5 2 263 22 287 1.37e-93 301
MsG0580025555.01.T01 AT5G46830 54.974 191 71 3 484 673 334 510 3.18e-55 197
MsG0580025555.01.T01 AT5G46830 46.218 238 107 6 5 231 4 231 2.05e-54 194
MsG0580025555.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 3.77e-42 162
MsG0580025555.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 2.01e-29 124
MsG0580025555.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 3.77e-42 162
MsG0580025555.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 2.01e-29 124
MsG0580025555.01.T01 AT1G01260 40.741 243 99 5 433 670 373 575 3.77e-42 162
MsG0580025555.01.T01 AT1G01260 31.169 231 150 3 3 225 7 236 2.01e-29 124
MsG0580025555.01.T01 AT2G46510 42.534 221 89 4 459 677 368 552 1.36e-41 160
MsG0580025555.01.T01 AT2G46510 33.476 233 143 4 4 225 8 239 3.15e-27 117
MsG0580025555.01.T01 AT4G16430 41.799 189 76 2 466 654 293 447 5.07e-38 147
MsG0580025555.01.T01 AT4G16430 29.348 184 120 4 45 225 50 226 8.14e-14 74.7
MsG0580025555.01.T01 AT4G00870 45.320 203 91 5 478 669 224 417 6.09e-36 140
MsG0580025555.01.T01 AT4G00870 31.694 183 97 5 44 225 34 189 4.54e-20 94.0
MsG0580025555.01.T01 AT4G09820 33.333 204 115 6 33 225 8 201 2.67e-26 114
MsG0580025555.01.T01 AT4G09820 31.373 153 74 3 490 642 360 481 2.02e-15 80.1
MsG0580025555.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 3.90e-23 104
MsG0580025555.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 2.57e-14 77.0
MsG0580025555.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 3.90e-23 104
MsG0580025555.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 2.57e-14 77.0
MsG0580025555.01.T01 AT1G63650 33.831 201 106 6 43 225 11 202 3.90e-23 104
MsG0580025555.01.T01 AT1G63650 26.455 189 131 3 489 669 401 589 2.57e-14 77.0
MsG0580025555.01.T01 AT5G41315 30.097 206 124 6 38 225 11 214 2.45e-20 96.3
MsG0580025555.01.T01 AT5G41315 26.531 196 131 4 487 669 443 638 2.84e-13 73.6
MsG0580025555.01.T01 AT5G41315 30.097 206 124 6 38 225 8 211 2.45e-20 96.3
MsG0580025555.01.T01 AT5G41315 26.531 196 131 4 487 669 440 635 3.30e-13 73.6
MsG0580025555.01.T01 AT5G41315 30.097 206 124 6 38 225 3 206 2.47e-20 95.9
MsG0580025555.01.T01 AT5G41315 26.531 196 131 4 487 669 435 630 3.25e-13 73.6
MsG0580025555.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 2.04e-19 92.4
MsG0580025555.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 2.36e-19 92.4
MsG0580025555.01.T01 AT4G00480 32.240 183 100 4 60 222 36 214 2.96e-19 92.4
MsG0580025555.01.T01 AT4G37850 32.432 185 93 6 471 640 123 290 5.96e-17 83.2
MsG0580025555.01.T01 AT4G37850 32.432 185 93 6 471 640 123 290 5.96e-17 83.2
MsG0580025555.01.T01 AT2G28160 33.562 146 87 4 497 641 135 271 2.20e-16 81.3
MsG0580025555.01.T01 AT2G28160 33.562 146 87 4 497 641 135 271 2.52e-16 80.9
MsG0580025555.01.T01 AT5G57150 30.601 183 119 5 494 674 55 231 3.46e-16 79.3
MsG0580025555.01.T01 AT5G57150 29.697 165 110 4 494 656 56 216 1.34e-15 77.0
MsG0580025555.01.T01 AT5G57150 29.697 165 110 4 494 656 56 216 2.12e-15 76.6
MsG0580025555.01.T01 AT5G57150 29.167 168 115 3 494 660 56 220 2.25e-15 77.4
MsG0580025555.01.T01 AT5G57150 29.448 163 111 3 494 655 55 214 3.19e-15 75.9
MsG0580025555.01.T01 AT4G29930 32.867 143 78 3 494 635 55 180 5.00e-14 72.4
MsG0580025555.01.T01 AT2G22750 31.288 163 104 3 479 640 140 295 8.16e-14 73.6
MsG0580025555.01.T01 AT2G22750 31.288 163 104 3 479 640 112 267 8.85e-14 73.2
MsG0580025555.01.T01 AT2G22750 31.288 163 104 3 479 640 140 295 8.86e-14 73.6
MsG0580025555.01.T01 AT2G22750 31.288 163 104 3 479 640 136 291 9.00e-14 73.6
MsG0580025555.01.T01 AT2G22750 31.288 163 104 3 479 640 112 267 1.01e-13 73.2
MsG0580025555.01.T01 AT3G26744 30.899 178 108 6 491 662 305 473 1.20e-13 74.3
MsG0580025555.01.T01 AT3G24140 25.118 211 133 6 475 663 177 384 1.43e-13 73.6
MsG0580025555.01.T01 AT4G29930 32.168 143 76 3 494 635 55 177 1.53e-13 71.2
MsG0580025555.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 2.03e-13 71.2
MsG0580025555.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 2.03e-13 71.2
MsG0580025555.01.T01 AT4G29930 32.168 143 76 3 494 635 55 177 2.23e-13 70.5
MsG0580025555.01.T01 AT3G24140 25.118 211 133 6 475 663 177 384 2.30e-13 73.2
MsG0580025555.01.T01 AT1G12860 29.114 158 107 3 491 648 265 417 2.39e-13 73.2
MsG0580025555.01.T01 AT4G29930 28.662 157 92 3 494 635 55 206 3.00e-13 70.9
MsG0580025555.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 3.33e-13 73.2
MsG0580025555.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 3.33e-13 73.2
MsG0580025555.01.T01 AT3G26744 31.707 164 99 5 491 648 305 461 3.33e-13 73.2
MsG0580025555.01.T01 AT1G12860 27.957 186 127 4 491 674 265 445 3.48e-13 72.8
MsG0580025555.01.T01 AT4G29930 44.000 75 42 0 495 569 56 130 7.73e-13 68.2
MsG0580025555.01.T01 AT2G16910 33.333 159 89 5 497 641 318 473 9.56e-13 71.6
MsG0580025555.01.T01 AT2G22770 27.027 185 119 4 487 659 123 303 1.39e-12 69.7
MsG0580025555.01.T01 AT2G22760 26.638 229 121 8 420 640 69 258 3.05e-12 68.2
MsG0580025555.01.T01 AT5G10570 28.643 199 113 6 478 674 138 309 3.88e-12 68.6
MsG0580025555.01.T01 AT2G22760 26.638 229 121 8 420 640 69 258 4.26e-12 68.2
MsG0580025555.01.T01 AT5G65640 30.000 200 116 7 479 674 166 345 1.58e-11 67.0
MsG0580025555.01.T01 AT1G10610 30.405 148 82 3 495 635 236 369 9.11e-11 65.1

Find 165 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCATTTCATGAATCTT+TGG 0.223803 5:+20426817 None:intergenic
ACAACAAGCAACCGTGAAAA+TGG 0.224565 5:+20428771 MsG0580025555.01.T01:CDS
GATATCGACGTGAAGATTAT+AGG 0.247347 5:+20428619 MsG0580025555.01.T01:CDS
AGTTCTTATGTTGCTAATAA+TGG 0.260796 5:+20427944 MsG0580025555.01.T01:CDS
CAACCTTCTTACGACTATTC+AGG 0.266356 5:+20427026 MsG0580025555.01.T01:CDS
TTGATTCGAAGAGGGTTTAT+TGG 0.270194 5:-20428581 None:intergenic
GAAATGAATCTTTCTGATTA+TGG 0.280620 5:+20427848 MsG0580025555.01.T01:CDS
CACAAAATCTCACCGGATTC+CGG 0.303867 5:-20427902 None:intergenic
AGGTTCTTCGTTACTTGGTT+GGG 0.304524 5:+20427046 MsG0580025555.01.T01:CDS
TATTCAGGTTCTTCGTTACT+TGG 0.315314 5:+20427041 MsG0580025555.01.T01:CDS
ACCATCGGCTGACGGTGTTT+TGG 0.319919 5:+20427415 MsG0580025555.01.T01:CDS
TGTTCTGTTGTTGGTGCTGC+TGG 0.321937 5:-20427688 None:intergenic
TTGAACATCCCCGACTTTAG+AGG 0.323506 5:-20428836 None:intergenic
AGAATGATCCTTCTTCGATT+TGG 0.325148 5:+20427567 MsG0580025555.01.T01:CDS
GATGGATAAAGCCTCACTTT+TGG 0.325555 5:+20428390 MsG0580025555.01.T01:CDS
TTCTTCTGTAACCGGATTAC+CGG 0.334316 5:-20427186 None:intergenic
TTTGGATCTTCTTGGCAGTT+AGG 0.342187 5:+20427524 MsG0580025555.01.T01:CDS
CACTGGCATGGTGCACTTCT+AGG 0.343448 5:-20428723 None:intergenic
TATTGTTATTGTTCTGTTGT+TGG 0.349299 5:-20427697 None:intergenic
CCTCTGATTTATCAACCTTA+TGG 0.351613 5:+20426880 MsG0580025555.01.T01:CDS
GGTTCCTCTCTTCCGTTTGC+CGG 0.358134 5:-20428277 None:intergenic
CTCCGGTGTTCTTGTTCAGC+AGG 0.359735 5:-20427131 None:intergenic
TGATTCGAAGAGGGTTTATT+GGG 0.361527 5:-20428580 None:intergenic
TTATCCATCTTCGAAACATT+AGG 0.361854 5:-20428376 None:intergenic
ACAGAACAATAACAATAATC+AGG 0.363674 5:+20427703 MsG0580025555.01.T01:CDS
GAGGTTAATGTCAGCGTTAA+TGG 0.371784 5:+20428693 MsG0580025555.01.T01:CDS
TGGGGTGATGGTTACTATAA+AGG 0.374935 5:+20427065 MsG0580025555.01.T01:CDS
TCGTTACTTGGTTGGGGTGA+TGG 0.379647 5:+20427053 MsG0580025555.01.T01:CDS
CAGGTTCTTCGTTACTTGGT+TGG 0.382764 5:+20427045 MsG0580025555.01.T01:CDS
TTGAAATTCTCTGGTGGTAC+TGG 0.385403 5:+20428148 MsG0580025555.01.T01:CDS
TGTTGGTGCTGCTGGTGACT+TGG 0.388845 5:-20427680 None:intergenic
TTATTGCTTCCTCTCGAATT+CGG 0.392691 5:-20428067 None:intergenic
TTCATTAATCTCCGGTAATC+CGG 0.396662 5:+20427175 MsG0580025555.01.T01:CDS
TCAGCTCCGGTGTGGTTAAC+CGG 0.398598 5:+20427314 MsG0580025555.01.T01:CDS
TGTTCCTAATGTTTCGAAGA+TGG 0.399395 5:+20428372 MsG0580025555.01.T01:CDS
TCGAATTCGAATTTCTTCTC+TGG 0.399599 5:+20427971 MsG0580025555.01.T01:CDS
ACAGGAGATTCTTCTGTAAC+CGG 0.415426 5:-20427194 None:intergenic
TTAAAGCTTGAAGACGTTGT+TGG 0.415771 5:-20426962 None:intergenic
CAACAAGCAACCGTGAAAAT+GGG 0.427408 5:+20428772 MsG0580025555.01.T01:CDS
GCGTCGAATTTGAAATTCTC+TGG 0.430033 5:+20428139 MsG0580025555.01.T01:CDS
TCAACAGAATCTCTAGCTTC+AGG 0.431024 5:-20427599 None:intergenic
GTTGTGGTGGCTGATGAGAC+TGG 0.431357 5:-20428534 None:intergenic
GTGGTTTGTGGTGGTTGTGA+CGG 0.435088 5:-20426915 None:intergenic
GGTGGTTGTGACGGTGGTGC+TGG 0.437264 5:-20426906 None:intergenic
TTGAATCCGGTGGTGGTTTG+TGG 0.438183 5:-20426927 None:intergenic
TCAGTAACTTCTTCATCAAC+AGG 0.444377 5:-20427212 None:intergenic
TTCTCTGGTGGTACTGGTGG+TGG 0.450615 5:+20428154 MsG0580025555.01.T01:CDS
GGCTTCCTCCCTCTCTTCCT+CGG 0.451066 5:-20428256 None:intergenic
CGACGTGAAGATTATAGGTT+GGG 0.451181 5:+20428624 MsG0580025555.01.T01:CDS
GAAAAGAAGCCGAGGAAGAG+AGG 0.453055 5:+20428247 MsG0580025555.01.T01:CDS
GAGGAAGAGAGGGAGGAAGC+CGG 0.453227 5:+20428258 MsG0580025555.01.T01:CDS
GTCAACGGAACTGGGCTGCC+TGG 0.453582 5:+20427275 MsG0580025555.01.T01:CDS
TGGTACTGGTGGTGGTGATT+CGG 0.453669 5:+20428162 MsG0580025555.01.T01:CDS
GAGAGTGTCTTGGTTGAATC+CGG 0.454531 5:-20426940 None:intergenic
TCCTGGTTCGAGTACTTTAA+CGG 0.455187 5:+20427766 MsG0580025555.01.T01:CDS
CGGTGGTGCTGGTGGCCATA+AGG 0.456488 5:-20426895 None:intergenic
TCGAAGGCGCAAAAGAAGTC+TGG 0.457045 5:+20426985 MsG0580025555.01.T01:CDS
GAAGAGGGTTTATTGGGTAC+AGG 0.458478 5:-20428574 None:intergenic
GGATTAGAAAAGCAACTTGA+TGG 0.460215 5:+20428478 MsG0580025555.01.T01:CDS
ACAACAATGGGAACGGGAAT+GGG 0.462203 5:+20428026 MsG0580025555.01.T01:CDS
CGTTTGTTGAAGCCGGAATC+CGG 0.465479 5:+20427890 MsG0580025555.01.T01:CDS
TGGTGGTGATTCGGACCATT+CGG 0.468581 5:+20428171 MsG0580025555.01.T01:CDS
TGATTCGGACCATTCGGATC+TGG 0.469684 5:+20428177 MsG0580025555.01.T01:CDS
TAGGTTGGGATGCAATGATA+AGG 0.470556 5:+20428638 MsG0580025555.01.T01:CDS
CGGCATTGTCCTCTAAAGTC+GGG 0.471070 5:+20428827 MsG0580025555.01.T01:CDS
TGTTGTTGTTGCTGCTGTTG+TGG 0.479668 5:-20428550 None:intergenic
AAAACTGAATCTGATAAAGA+TGG 0.482069 5:+20428457 MsG0580025555.01.T01:CDS
AACAACAATGGGAACGGGAA+TGG 0.482475 5:+20428025 MsG0580025555.01.T01:CDS
CCATTCGGATCTGGAGGCTT+CGG 0.482750 5:+20428186 MsG0580025555.01.T01:CDS
CGCCCTCTCACAAGCTGAGA+GGG 0.484643 5:-20427351 None:intergenic
GGTTCTTCGTTACTTGGTTG+GGG 0.488569 5:+20427047 MsG0580025555.01.T01:CDS
TCTGGAGGCTTCGGTGGTGA+AGG 0.499262 5:+20428195 MsG0580025555.01.T01:CDS
AATGGGAACGGGAATGGGAA+TGG 0.501146 5:+20428031 MsG0580025555.01.T01:CDS
AGAGGAAGCAATAATGATGA+TGG 0.505617 5:+20428076 MsG0580025555.01.T01:CDS
AATTTCAAATTCGACGCCCC+TGG 0.511045 5:-20428133 None:intergenic
GGCTTCGGTGGTGAAGGAGG+TGG 0.511799 5:+20428201 MsG0580025555.01.T01:CDS
AAAAGAAGCCGAGGAAGAGA+GGG 0.514449 5:+20428248 MsG0580025555.01.T01:CDS
CGCCCTCTCAGCTTGTGAGA+GGG 0.515362 5:+20427349 MsG0580025555.01.T01:CDS
AGCTTATTATAATTCAGCTC+CGG 0.519595 5:+20427301 MsG0580025555.01.T01:CDS
AGAGGGAGGAAGCCGGCAAA+CGG 0.519792 5:+20428265 MsG0580025555.01.T01:CDS
CTTGAAACATGAACAACACT+AGG 0.520830 5:-20427794 None:intergenic
GCTGACATTAACCTCGCTGC+CGG 0.523507 5:-20428685 None:intergenic
GAACTTAATTCATTAATCTC+CGG 0.523787 5:+20427167 MsG0580025555.01.T01:CDS
ACGGGAATGGGAATGGAAAG+AGG 0.524874 5:+20428038 MsG0580025555.01.T01:CDS
AGGTTGGGATGCAATGATAA+GGG 0.526355 5:+20428639 MsG0580025555.01.T01:CDS
AGGAGAACAACAATGGGAAC+GGG 0.528523 5:+20428020 MsG0580025555.01.T01:CDS
GTCTTGGTTGAATCCGGTGG+TGG 0.529478 5:-20426934 None:intergenic
AGGATCATTCTCACCATGAT+GGG 0.531136 5:-20427555 None:intergenic
TCTGGTGTAATTGTTCCACC+AGG 0.531186 5:+20428115 MsG0580025555.01.T01:CDS
TCAGCAACGTTTGTTGAAGC+CGG 0.534264 5:+20427883 MsG0580025555.01.T01:CDS
TGTTGTTGCTGCTGTTGTGG+TGG 0.537319 5:-20428547 None:intergenic
AAGGATCATTCTCACCATGA+TGG 0.538289 5:-20427556 None:intergenic
CGACGATAACTCTTCAGTAA+TGG 0.538731 5:+20426842 MsG0580025555.01.T01:CDS
CTGACATTAACCTCGCTGCC+GGG 0.540639 5:-20428684 None:intergenic
TTGCTGAGGAGAACAACAAT+GGG 0.545102 5:+20428014 MsG0580025555.01.T01:CDS
GACGTTGTTGGAGAGTGTCT+TGG 0.546035 5:-20426950 None:intergenic
TGGTTCGAGTACTTTAACGG+AGG 0.547059 5:+20427769 MsG0580025555.01.T01:CDS
TCGACGTGAAGATTATAGGT+TGG 0.548320 5:+20428623 MsG0580025555.01.T01:CDS
AATCTTTCTGATTATGGTGG+TGG 0.549706 5:+20427854 MsG0580025555.01.T01:CDS
TCGTTAATCCAAATCGAAGA+AGG 0.550466 5:-20427575 None:intergenic
ATCATTTACCACAGACACAC+TGG 0.550984 5:-20428740 None:intergenic
TTCAAATTCGACGCCCCTGG+TGG 0.552724 5:-20428130 None:intergenic
TCGCCCTCTCAGCTTGTGAG+AGG 0.553021 5:+20427348 MsG0580025555.01.T01:CDS
AAATTCTCTGGTGGTACTGG+TGG 0.553450 5:+20428151 MsG0580025555.01.T01:CDS
GAACCTGAATAGTCGTAAGA+AGG 0.553990 5:-20427029 None:intergenic
GTTTGTGGTGGTTGTGACGG+TGG 0.556522 5:-20426912 None:intergenic
GATTAGAAAAGCAACTTGAT+GGG 0.561320 5:+20428479 MsG0580025555.01.T01:CDS
GGAGGCTTCGGTGGTGAAGG+AGG 0.561351 5:+20428198 MsG0580025555.01.T01:CDS
ACGATGCAATTTGAAACTCC+TGG 0.564466 5:+20427749 MsG0580025555.01.T01:CDS
GAATTATAATAAGCTTGTCC+AGG 0.566444 5:-20427293 None:intergenic
GGTTGTGACGGTGGTGCTGG+TGG 0.566453 5:-20426903 None:intergenic
TTCGGATCTGGAGGCTTCGG+TGG 0.573741 5:+20428189 MsG0580025555.01.T01:CDS
ATTAGAGCTTGATTCGAAGA+GGG 0.573791 5:-20428589 None:intergenic
GAAGCCGGCAAACGGAAGAG+AGG 0.578591 5:+20428273 MsG0580025555.01.T01:CDS
CAACCACCACAAACCACCAC+CGG 0.580431 5:+20426921 MsG0580025555.01.T01:CDS
TGATGAAGAAGTTACTGATA+CGG 0.580523 5:+20427217 MsG0580025555.01.T01:CDS
GCGGCATTGTCCTCTAAAGT+CGG 0.582204 5:+20428826 MsG0580025555.01.T01:CDS
AGAAGCCGAGGAAGAGAGGG+AGG 0.582977 5:+20428251 MsG0580025555.01.T01:CDS
ACAGTTAGTTTCCGTTGCTG+AGG 0.584195 5:+20428000 MsG0580025555.01.T01:CDS
TCGCCCTCTCACAAGCTGAG+AGG 0.584834 5:-20427352 None:intergenic
CGTCTTCAAGCTTTAATCGA+AGG 0.585450 5:+20426969 MsG0580025555.01.T01:CDS
CACTCAGGAGCAGCTTCGAG+CGG 0.590406 5:+20428807 MsG0580025555.01.T01:CDS
TCAGCTTCAACATGATTCAA+CGG 0.591097 5:-20428298 None:intergenic
CAGAACAATAACAATAATCA+GGG 0.591184 5:+20427704 MsG0580025555.01.T01:CDS
AATCCGGTGGTGGTTTGTGG+TGG 0.592017 5:-20426924 None:intergenic
GTTGCTGAGGAGAACAACAA+TGG 0.596228 5:+20428013 MsG0580025555.01.T01:CDS
TGGTGTAATTGTTCCACCAG+GGG 0.598619 5:+20428117 MsG0580025555.01.T01:CDS
CTGGTGTAATTGTTCCACCA+GGG 0.599733 5:+20428116 MsG0580025555.01.T01:CDS
ACCAAAACACAAAATCTCAC+CGG 0.600817 5:-20427909 None:intergenic
CGATAACTCTTCAGTAATGG+AGG 0.601389 5:+20426845 MsG0580025555.01.T01:CDS
TCCGTTAAAGTACTCGAACC+AGG 0.602105 5:-20427767 None:intergenic
ATTGTTGTTCTCCTCAGCAA+CGG 0.603161 5:-20428011 None:intergenic
TTCGGACCATTCGGATCTGG+AGG 0.603525 5:+20428180 MsG0580025555.01.T01:CDS
GGTGGATAGTAGTCGTGTGG+TGG 0.606483 5:+20428219 MsG0580025555.01.T01:CDS
GAGGAGAACAACAATGGGAA+CGG 0.611347 5:+20428019 MsG0580025555.01.T01:CDS
TTAGGTAATTCTGCCCATCA+TGG 0.611875 5:+20427542 MsG0580025555.01.T01:CDS
TCCAAAACACCGTCAGCCGA+TGG 0.615737 5:-20427416 None:intergenic
GATTAGAGCTTGATTCGAAG+AGG 0.620386 5:-20428590 None:intergenic
TCAGCTCCGGTTAACCACAC+CGG 0.622205 5:-20427320 None:intergenic
GCGAGACAAGGTCAAGAACA+TGG 0.625791 5:+20427371 MsG0580025555.01.T01:CDS
AACAAGCAACCGTGAAAATG+GGG 0.625969 5:+20428773 MsG0580025555.01.T01:CDS
GCTTGTGAGAGGGCGAGACA+AGG 0.630681 5:+20427359 MsG0580025555.01.T01:CDS
TATAGCATCACCCAAAAGTG+AGG 0.634202 5:-20428401 None:intergenic
TCGAATTTGAAATTCTCTGG+TGG 0.634544 5:+20428142 MsG0580025555.01.T01:CDS
ATTATAATTCAGCTCCGGTG+TGG 0.637766 5:+20427306 MsG0580025555.01.T01:CDS
CACCTGCTGAACAAGAACAC+CGG 0.639706 5:+20427129 MsG0580025555.01.T01:CDS
GGCATTGTCCTCTAAAGTCG+GGG 0.642951 5:+20428828 MsG0580025555.01.T01:CDS
GCGTGTATACCATCGGCTGA+CGG 0.644460 5:+20427407 MsG0580025555.01.T01:CDS
GACGCTGGCGTGTATACCAT+CGG 0.650932 5:+20427400 MsG0580025555.01.T01:CDS
TGAATCATGTTGAAGCTGAG+AGG 0.655301 5:+20428302 MsG0580025555.01.T01:CDS
AGGAGATCACCGAATTCGAG+AGG 0.656826 5:+20428058 MsG0580025555.01.T01:CDS
AGTGTCTTGGTTGAATCCGG+TGG 0.657627 5:-20426937 None:intergenic
TTACCACAGACACACTGGCA+TGG 0.658103 5:-20428735 None:intergenic
ACATTAACCTCGCTGCCGGG+TGG 0.659176 5:-20428681 None:intergenic
ATGAATCTTTCTGATTATGG+TGG 0.662194 5:+20427851 MsG0580025555.01.T01:CDS
GCACCATGCCAGTGTGTCTG+TGG 0.666701 5:+20428732 MsG0580025555.01.T01:CDS
AGGTTGCCAGAAAATAGCGT+AGG 0.667613 5:-20427009 None:intergenic
TAAGGTTGATAAATCAGAGG+AGG 0.672550 5:-20426877 None:intergenic
CCATAAGGTTGATAAATCAG+AGG 0.672761 5:-20426880 None:intergenic
AGAACATGGTATACAGACGC+TGG 0.675420 5:+20427385 MsG0580025555.01.T01:CDS
GGAGGTGGATAGTAGTCGTG+TGG 0.676666 5:+20428216 MsG0580025555.01.T01:CDS
CCGAAGCCTCCAGATCCGAA+TGG 0.681912 5:-20428186 None:intergenic
TCTTGTTACAACAACAACAA+CGG 0.685083 5:+20427631 MsG0580025555.01.T01:CDS
TGGAGCCCGAAAAGAAGCCG+AGG 0.695389 5:+20428239 MsG0580025555.01.T01:CDS
AAGAAGTTACTGATACGGAG+TGG 0.724771 5:+20427222 MsG0580025555.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACAATAATTTTGATTT+TGG + Chr5:20427506-20427525 MsG0580025555.01.T01:CDS 10.0%
! AAAACTGAATCTGATAAAGA+TGG + Chr5:20428457-20428476 MsG0580025555.01.T01:CDS 25.0%
! ACAGAACAATAACAATAATC+AGG + Chr5:20427703-20427722 MsG0580025555.01.T01:CDS 25.0%
! AGTTCTTATGTTGCTAATAA+TGG + Chr5:20427944-20427963 MsG0580025555.01.T01:CDS 25.0%
! CAGAACAATAACAATAATCA+GGG + Chr5:20427704-20427723 MsG0580025555.01.T01:CDS 25.0%
! GAAATGAATCTTTCTGATTA+TGG + Chr5:20427848-20427867 MsG0580025555.01.T01:CDS 25.0%
! GAACTTAATTCATTAATCTC+CGG + Chr5:20427167-20427186 MsG0580025555.01.T01:CDS 25.0%
!! TATTGTTATTGTTCTGTTGT+TGG - Chr5:20427700-20427719 None:intergenic 25.0%
!! TGATCAAAGTTTCTTTTCTA+AGG + Chr5:20427826-20427845 MsG0580025555.01.T01:CDS 25.0%
!!! ATTTTGATTTTGGATCTTCT+TGG + Chr5:20427516-20427535 MsG0580025555.01.T01:CDS 25.0%
AGCTTATTATAATTCAGCTC+CGG + Chr5:20427301-20427320 MsG0580025555.01.T01:CDS 30.0%
ATGAATCTTTCTGATTATGG+TGG + Chr5:20427851-20427870 MsG0580025555.01.T01:CDS 30.0%
GAATTATAATAAGCTTGTCC+AGG - Chr5:20427296-20427315 None:intergenic 30.0%
GATTAGAAAAGCAACTTGAT+GGG + Chr5:20428479-20428498 MsG0580025555.01.T01:CDS 30.0%
TCTTGTTACAACAACAACAA+CGG + Chr5:20427631-20427650 MsG0580025555.01.T01:CDS 30.0%
TGATGAAGAAGTTACTGATA+CGG + Chr5:20427217-20427236 MsG0580025555.01.T01:CDS 30.0%
TTATCCATCTTCGAAACATT+AGG - Chr5:20428379-20428398 None:intergenic 30.0%
AATCTTTCTGATTATGGTGG+TGG + Chr5:20427854-20427873 MsG0580025555.01.T01:CDS 35.0%
ACCAAAACACAAAATCTCAC+CGG - Chr5:20427912-20427931 None:intergenic 35.0%
AGAATGATCCTTCTTCGATT+TGG + Chr5:20427567-20427586 MsG0580025555.01.T01:CDS 35.0%
AGAGGAAGCAATAATGATGA+TGG + Chr5:20428076-20428095 MsG0580025555.01.T01:CDS 35.0%
CCTCTGATTTATCAACCTTA+TGG + Chr5:20426880-20426899 MsG0580025555.01.T01:CDS 35.0%
CTTGAAACATGAACAACACT+AGG - Chr5:20427797-20427816 None:intergenic 35.0%
GATATCGACGTGAAGATTAT+AGG + Chr5:20428619-20428638 MsG0580025555.01.T01:CDS 35.0%
GGATTAGAAAAGCAACTTGA+TGG + Chr5:20428478-20428497 MsG0580025555.01.T01:CDS 35.0%
TCAGCTTCAACATGATTCAA+CGG - Chr5:20428301-20428320 None:intergenic 35.0%
TCAGTAACTTCTTCATCAAC+AGG - Chr5:20427215-20427234 None:intergenic 35.0%
TCGAATTCGAATTTCTTCTC+TGG + Chr5:20427971-20427990 MsG0580025555.01.T01:CDS 35.0%
TCGTTAATCCAAATCGAAGA+AGG - Chr5:20427578-20427597 None:intergenic 35.0%
TGATTCGAAGAGGGTTTATT+GGG - Chr5:20428583-20428602 None:intergenic 35.0%
TGTTCCTAATGTTTCGAAGA+TGG + Chr5:20428372-20428391 MsG0580025555.01.T01:CDS 35.0%
TTAAAGCTTGAAGACGTTGT+TGG - Chr5:20426965-20426984 None:intergenic 35.0%
TTATTGCTTCCTCTCGAATT+CGG - Chr5:20428070-20428089 None:intergenic 35.0%
TTCATTAATCTCCGGTAATC+CGG + Chr5:20427175-20427194 MsG0580025555.01.T01:CDS 35.0%
! ATTAGAGCTTGATTCGAAGA+GGG - Chr5:20428592-20428611 None:intergenic 35.0%
! GGAATGCTATCTTTTACTTC+TGG + Chr5:20428097-20428116 MsG0580025555.01.T01:CDS 35.0%
! TATTCAGGTTCTTCGTTACT+TGG + Chr5:20427041-20427060 MsG0580025555.01.T01:CDS 35.0%
! TCGAATTTGAAATTCTCTGG+TGG + Chr5:20428142-20428161 MsG0580025555.01.T01:CDS 35.0%
! TTGATTCGAAGAGGGTTTAT+TGG - Chr5:20428584-20428603 None:intergenic 35.0%
!! ATGGATAAAGCCTCACTTTT+GGG + Chr5:20428391-20428410 MsG0580025555.01.T01:CDS 35.0%
!! CCATAAGGTTGATAAATCAG+AGG - Chr5:20426883-20426902 None:intergenic 35.0%
!! GTTCTCTAAGAACTTTTCTC+CGG - Chr5:20427151-20427170 None:intergenic 35.0%
!! TAAGGTTGATAAATCAGAGG+AGG - Chr5:20426880-20426899 None:intergenic 35.0%
AACAAGCAACCGTGAAAATG+GGG + Chr5:20428773-20428792 MsG0580025555.01.T01:CDS 40.0%
AAGAAGTTACTGATACGGAG+TGG + Chr5:20427222-20427241 MsG0580025555.01.T01:CDS 40.0%
AAGGATCATTCTCACCATGA+TGG - Chr5:20427559-20427578 None:intergenic 40.0%
ACAACAAGCAACCGTGAAAA+TGG + Chr5:20428771-20428790 MsG0580025555.01.T01:CDS 40.0%
ACAGGAGATTCTTCTGTAAC+CGG - Chr5:20427197-20427216 None:intergenic 40.0%
AGGATCATTCTCACCATGAT+GGG - Chr5:20427558-20427577 None:intergenic 40.0%
AGGTTCTTCGTTACTTGGTT+GGG + Chr5:20427046-20427065 MsG0580025555.01.T01:CDS 40.0%
AGGTTGGGATGCAATGATAA+GGG + Chr5:20428639-20428658 MsG0580025555.01.T01:CDS 40.0%
ATCATTTACCACAGACACAC+TGG - Chr5:20428743-20428762 None:intergenic 40.0%
ATGCAGTAAGAAAAACCACC+CGG + Chr5:20428666-20428685 MsG0580025555.01.T01:CDS 40.0%
ATTATAATTCAGCTCCGGTG+TGG + Chr5:20427306-20427325 MsG0580025555.01.T01:CDS 40.0%
CAACAAGCAACCGTGAAAAT+GGG + Chr5:20428772-20428791 MsG0580025555.01.T01:CDS 40.0%
CAACCTTCTTACGACTATTC+AGG + Chr5:20427026-20427045 MsG0580025555.01.T01:CDS 40.0%
CGACGATAACTCTTCAGTAA+TGG + Chr5:20426842-20426861 MsG0580025555.01.T01:CDS 40.0%
CGACGTGAAGATTATAGGTT+GGG + Chr5:20428624-20428643 MsG0580025555.01.T01:CDS 40.0%
CGATAACTCTTCAGTAATGG+AGG + Chr5:20426845-20426864 MsG0580025555.01.T01:CDS 40.0%
GAACCTGAATAGTCGTAAGA+AGG - Chr5:20427032-20427051 None:intergenic 40.0%
GAGGTTAATGTCAGCGTTAA+TGG + Chr5:20428693-20428712 MsG0580025555.01.T01:CDS 40.0%
TATAGCATCACCCAAAAGTG+AGG - Chr5:20428404-20428423 None:intergenic 40.0%
TCGACGTGAAGATTATAGGT+TGG + Chr5:20428623-20428642 MsG0580025555.01.T01:CDS 40.0%
TGAATCATGTTGAAGCTGAG+AGG + Chr5:20428302-20428321 MsG0580025555.01.T01:CDS 40.0%
TTAGGTAATTCTGCCCATCA+TGG + Chr5:20427542-20427561 MsG0580025555.01.T01:CDS 40.0%
TTCTTCTGTAACCGGATTAC+CGG - Chr5:20427189-20427208 None:intergenic 40.0%
TTGAAATTCTCTGGTGGTAC+TGG + Chr5:20428148-20428167 MsG0580025555.01.T01:CDS 40.0%
TTGCTGAGGAGAACAACAAT+GGG + Chr5:20428014-20428033 MsG0580025555.01.T01:CDS 40.0%
TTTGGATCTTCTTGGCAGTT+AGG + Chr5:20427524-20427543 MsG0580025555.01.T01:CDS 40.0%
! AAAACGACTCCCCATTTTCA+CGG - Chr5:20428785-20428804 None:intergenic 40.0%
! ACGATGCAATTTGAAACTCC+TGG + Chr5:20427749-20427768 MsG0580025555.01.T01:CDS 40.0%
! AGTCTTTTGTCAACGGAACT+GGG + Chr5:20427267-20427286 MsG0580025555.01.T01:CDS 40.0%
! ATGACGCAGTCTTTTGTCAA+CGG + Chr5:20427260-20427279 MsG0580025555.01.T01:CDS 40.0%
! ATTGTTGTTCTCCTCAGCAA+CGG - Chr5:20428014-20428033 None:intergenic 40.0%
! CGTCTTCAAGCTTTAATCGA+AGG + Chr5:20426969-20426988 MsG0580025555.01.T01:CDS 40.0%
! GATGGATAAAGCCTCACTTT+TGG + Chr5:20428390-20428409 MsG0580025555.01.T01:CDS 40.0%
! GATTAGAGCTTGATTCGAAG+AGG - Chr5:20428593-20428612 None:intergenic 40.0%
! GCGTCGAATTTGAAATTCTC+TGG + Chr5:20428139-20428158 MsG0580025555.01.T01:CDS 40.0%
! GGTGGTTTTTCTTACTGCAT+TGG - Chr5:20428666-20428685 None:intergenic 40.0%
! TAGGTTGGGATGCAATGATA+AGG + Chr5:20428638-20428657 MsG0580025555.01.T01:CDS 40.0%
! TCAACAGAATCTCTAGCTTC+AGG - Chr5:20427602-20427621 None:intergenic 40.0%
! TCCGGTGAGATTTTGTGTTT+TGG + Chr5:20427908-20427927 MsG0580025555.01.T01:CDS 40.0%
! TCCTGGTTCGAGTACTTTAA+CGG + Chr5:20427766-20427785 MsG0580025555.01.T01:CDS 40.0%
! TGGGGTGATGGTTACTATAA+AGG + Chr5:20427065-20427084 MsG0580025555.01.T01:CDS 40.0%
AAAAGAAGCCGAGGAAGAGA+GGG + Chr5:20428248-20428267 MsG0580025555.01.T01:CDS 45.0%
AACAACAATGGGAACGGGAA+TGG + Chr5:20428025-20428044 MsG0580025555.01.T01:CDS 45.0%
AATTTCAAATTCGACGCCCC+TGG - Chr5:20428136-20428155 None:intergenic 45.0%
ACAACAATGGGAACGGGAAT+GGG + Chr5:20428026-20428045 MsG0580025555.01.T01:CDS 45.0%
AGAACATGGTATACAGACGC+TGG + Chr5:20427385-20427404 MsG0580025555.01.T01:CDS 45.0%
AGGAGAACAACAATGGGAAC+GGG + Chr5:20428020-20428039 MsG0580025555.01.T01:CDS 45.0%
AGGTTGCCAGAAAATAGCGT+AGG - Chr5:20427012-20427031 None:intergenic 45.0%
CACAAAATCTCACCGGATTC+CGG - Chr5:20427905-20427924 None:intergenic 45.0%
CAGGTTCTTCGTTACTTGGT+TGG + Chr5:20427045-20427064 MsG0580025555.01.T01:CDS 45.0%
CTGGTGTAATTGTTCCACCA+GGG + Chr5:20428116-20428135 MsG0580025555.01.T01:CDS 45.0%
GAAGAGGGTTTATTGGGTAC+AGG - Chr5:20428577-20428596 None:intergenic 45.0%
GAGGAGAACAACAATGGGAA+CGG + Chr5:20428019-20428038 MsG0580025555.01.T01:CDS 45.0%
GGTTCTTCGTTACTTGGTTG+GGG + Chr5:20427047-20427066 MsG0580025555.01.T01:CDS 45.0%
GTTGCTGAGGAGAACAACAA+TGG + Chr5:20428013-20428032 MsG0580025555.01.T01:CDS 45.0%
TCTGGTGTAATTGTTCCACC+AGG + Chr5:20428115-20428134 MsG0580025555.01.T01:CDS 45.0%
TGGTGTAATTGTTCCACCAG+GGG + Chr5:20428117-20428136 MsG0580025555.01.T01:CDS 45.0%
TGGTTCGAGTACTTTAACGG+AGG + Chr5:20427769-20427788 MsG0580025555.01.T01:CDS 45.0%
TTGAACATCCCCGACTTTAG+AGG - Chr5:20428839-20428858 None:intergenic 45.0%
! AAATTCTCTGGTGGTACTGG+TGG + Chr5:20428151-20428170 MsG0580025555.01.T01:CDS 45.0%
! ACAGTTAGTTTCCGTTGCTG+AGG + Chr5:20428000-20428019 MsG0580025555.01.T01:CDS 45.0%
! CAGTCTTTTGTCAACGGAAC+TGG + Chr5:20427266-20427285 MsG0580025555.01.T01:CDS 45.0%
! TCAGCAACGTTTGTTGAAGC+CGG + Chr5:20427883-20427902 MsG0580025555.01.T01:CDS 45.0%
! TCCGTTAAAGTACTCGAACC+AGG - Chr5:20427770-20427789 None:intergenic 45.0%
! TCTCTTCCTCGGCTTCTTTT+CGG - Chr5:20428248-20428267 None:intergenic 45.0%
! TGTTGTTGTTGCTGCTGTTG+TGG - Chr5:20428553-20428572 None:intergenic 45.0%
!! GAGAGTGTCTTGGTTGAATC+CGG - Chr5:20426943-20426962 None:intergenic 45.0%
!! TCTGGACCTACGCTATTTTC+TGG + Chr5:20427003-20427022 MsG0580025555.01.T01:CDS 45.0%
AATGGGAACGGGAATGGGAA+TGG + Chr5:20428031-20428050 MsG0580025555.01.T01:CDS 50.0%
ACGGGAATGGGAATGGAAAG+AGG + Chr5:20428038-20428057 MsG0580025555.01.T01:CDS 50.0%
AGGAGATCACCGAATTCGAG+AGG + Chr5:20428058-20428077 MsG0580025555.01.T01:CDS 50.0%
AGTGTCTTGGTTGAATCCGG+TGG - Chr5:20426940-20426959 None:intergenic 50.0%
CACCTGCTGAACAAGAACAC+CGG + Chr5:20427129-20427148 MsG0580025555.01.T01:CDS 50.0%
GAAAAGAAGCCGAGGAAGAG+AGG + Chr5:20428247-20428266 MsG0580025555.01.T01:CDS 50.0%
GCGAGACAAGGTCAAGAACA+TGG + Chr5:20427371-20427390 MsG0580025555.01.T01:CDS 50.0%
TCGTTACTTGGTTGGGGTGA+TGG + Chr5:20427053-20427072 MsG0580025555.01.T01:CDS 50.0%
TGTTGTTGCTGCTGTTGTGG+TGG - Chr5:20428550-20428569 None:intergenic 50.0%
TTACCACAGACACACTGGCA+TGG - Chr5:20428738-20428757 None:intergenic 50.0%
! CGTTTGTTGAAGCCGGAATC+CGG + Chr5:20427890-20427909 MsG0580025555.01.T01:CDS 50.0%
! CTCTTCCTCGGCTTCTTTTC+GGG - Chr5:20428247-20428266 None:intergenic 50.0%
! GTGGTTTGTGGTGGTTGTGA+CGG - Chr5:20426918-20426937 None:intergenic 50.0%
! TCGAAGGCGCAAAAGAAGTC+TGG + Chr5:20426985-20427004 MsG0580025555.01.T01:CDS 50.0%
! TGATTCGGACCATTCGGATC+TGG + Chr5:20428177-20428196 MsG0580025555.01.T01:CDS 50.0%
! TGGTGGTGATTCGGACCATT+CGG + Chr5:20428171-20428190 MsG0580025555.01.T01:CDS 50.0%
! TTGAATCCGGTGGTGGTTTG+TGG - Chr5:20426930-20426949 None:intergenic 50.0%
!! CGGCATTGTCCTCTAAAGTC+GGG + Chr5:20428827-20428846 MsG0580025555.01.T01:CDS 50.0%
!! GACGTTGTTGGAGAGTGTCT+TGG - Chr5:20426953-20426972 None:intergenic 50.0%
!! GCGGCATTGTCCTCTAAAGT+CGG + Chr5:20428826-20428845 MsG0580025555.01.T01:CDS 50.0%
!! GGCATTGTCCTCTAAAGTCG+GGG + Chr5:20428828-20428847 MsG0580025555.01.T01:CDS 50.0%
!! TGGTACTGGTGGTGGTGATT+CGG + Chr5:20428162-20428181 MsG0580025555.01.T01:CDS 50.0%
!! TGTTCTGTTGTTGGTGCTGC+TGG - Chr5:20427691-20427710 None:intergenic 50.0%
!!! GGGGAGTCGTTTTTACACTC+AGG + Chr5:20428792-20428811 MsG0580025555.01.T01:CDS 50.0%
CAACCACCACAAACCACCAC+CGG + Chr5:20426921-20426940 MsG0580025555.01.T01:CDS 55.0%
CACTGGCATGGTGCACTTCT+AGG - Chr5:20428726-20428745 None:intergenic 55.0%
CCATTCGGATCTGGAGGCTT+CGG + Chr5:20428186-20428205 MsG0580025555.01.T01:CDS 55.0%
CTCCGGTGTTCTTGTTCAGC+AGG - Chr5:20427134-20427153 None:intergenic 55.0%
CTGACATTAACCTCGCTGCC+GGG - Chr5:20428687-20428706 None:intergenic 55.0%
GACGCTGGCGTGTATACCAT+CGG + Chr5:20427400-20427419 MsG0580025555.01.T01:CDS 55.0%
GCTGACATTAACCTCGCTGC+CGG - Chr5:20428688-20428707 None:intergenic 55.0%
GGAGGTGGATAGTAGTCGTG+TGG + Chr5:20428216-20428235 MsG0580025555.01.T01:CDS 55.0%
GGTGGATAGTAGTCGTGTGG+TGG + Chr5:20428219-20428238 MsG0580025555.01.T01:CDS 55.0%
GGTTCCTCTCTTCCGTTTGC+CGG - Chr5:20428280-20428299 None:intergenic 55.0%
GTCTTGGTTGAATCCGGTGG+TGG - Chr5:20426937-20426956 None:intergenic 55.0%
GTTGTGGTGGCTGATGAGAC+TGG - Chr5:20428537-20428556 None:intergenic 55.0%
GTTTGTGGTGGTTGTGACGG+TGG - Chr5:20426915-20426934 None:intergenic 55.0%
TCAGCTCCGGTGTGGTTAAC+CGG + Chr5:20427314-20427333 MsG0580025555.01.T01:CDS 55.0%
TCAGCTCCGGTTAACCACAC+CGG - Chr5:20427323-20427342 None:intergenic 55.0%
TCCAAAACACCGTCAGCCGA+TGG - Chr5:20427419-20427438 None:intergenic 55.0%
TTCAAATTCGACGCCCCTGG+TGG - Chr5:20428133-20428152 None:intergenic 55.0%
TTCGGACCATTCGGATCTGG+AGG + Chr5:20428180-20428199 MsG0580025555.01.T01:CDS 55.0%
! AATCCGGTGGTGGTTTGTGG+TGG - Chr5:20426927-20426946 None:intergenic 55.0%
! GAGGGCGAGATTTTCAGCTC+CGG - Chr5:20427336-20427355 None:intergenic 55.0%
! GCGTGTATACCATCGGCTGA+CGG + Chr5:20427407-20427426 MsG0580025555.01.T01:CDS 55.0%
!! ACCATCGGCTGACGGTGTTT+TGG + Chr5:20427415-20427434 MsG0580025555.01.T01:CDS 55.0%
!! TGTTGGTGCTGCTGGTGACT+TGG - Chr5:20427683-20427702 None:intergenic 55.0%
!! TTCTCTGGTGGTACTGGTGG+TGG + Chr5:20428154-20428173 MsG0580025555.01.T01:CDS 55.0%
!!! GCTGACGGTGTTTTGGAGCT+TGG + Chr5:20427422-20427441 MsG0580025555.01.T01:CDS 55.0%
ACATTAACCTCGCTGCCGGG+TGG - Chr5:20428684-20428703 None:intergenic 60.0%
AGAAAAACCACCCGGCAGCG+AGG + Chr5:20428674-20428693 MsG0580025555.01.T01:CDS 60.0%
AGAAGCCGAGGAAGAGAGGG+AGG + Chr5:20428251-20428270 MsG0580025555.01.T01:CDS 60.0%
AGAGGGAGGAAGCCGGCAAA+CGG + Chr5:20428265-20428284 MsG0580025555.01.T01:CDS 60.0%
CACTCAGGAGCAGCTTCGAG+CGG + Chr5:20428807-20428826 MsG0580025555.01.T01:CDS 60.0%
CCGAAGCCTCCAGATCCGAA+TGG - Chr5:20428189-20428208 None:intergenic 60.0%
CGCCCTCTCACAAGCTGAGA+GGG - Chr5:20427354-20427373 None:intergenic 60.0%
CGCCCTCTCAGCTTGTGAGA+GGG + Chr5:20427349-20427368 MsG0580025555.01.T01:CDS 60.0%
GAAGCCGGCAAACGGAAGAG+AGG + Chr5:20428273-20428292 MsG0580025555.01.T01:CDS 60.0%
GAGGAAGAGAGGGAGGAAGC+CGG + Chr5:20428258-20428277 MsG0580025555.01.T01:CDS 60.0%
GCACCATGCCAGTGTGTCTG+TGG + Chr5:20428732-20428751 MsG0580025555.01.T01:CDS 60.0%
GCTTGTGAGAGGGCGAGACA+AGG + Chr5:20427359-20427378 MsG0580025555.01.T01:CDS 60.0%
GGCTTCCTCCCTCTCTTCCT+CGG - Chr5:20428259-20428278 None:intergenic 60.0%
TCGCCCTCTCACAAGCTGAG+AGG - Chr5:20427355-20427374 None:intergenic 60.0%
TCGCCCTCTCAGCTTGTGAG+AGG + Chr5:20427348-20427367 MsG0580025555.01.T01:CDS 60.0%
TCTGGAGGCTTCGGTGGTGA+AGG + Chr5:20428195-20428214 MsG0580025555.01.T01:CDS 60.0%
TGGAGCCCGAAAAGAAGCCG+AGG + Chr5:20428239-20428258 MsG0580025555.01.T01:CDS 60.0%
TTCGGATCTGGAGGCTTCGG+TGG + Chr5:20428189-20428208 MsG0580025555.01.T01:CDS 60.0%
GGAGGCTTCGGTGGTGAAGG+AGG + Chr5:20428198-20428217 MsG0580025555.01.T01:CDS 65.0%
GGCTTCGGTGGTGAAGGAGG+TGG + Chr5:20428201-20428220 MsG0580025555.01.T01:CDS 65.0%
GGTGGTTGTGACGGTGGTGC+TGG - Chr5:20426909-20426928 None:intergenic 65.0%
GTCAACGGAACTGGGCTGCC+TGG + Chr5:20427275-20427294 MsG0580025555.01.T01:CDS 65.0%
! GGTTGTGACGGTGGTGCTGG+TGG - Chr5:20426906-20426925 None:intergenic 65.0%
!! CGGTGGTGCTGGTGGCCATA+AGG - Chr5:20426898-20426917 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 20426828 20428861 20426828 ID=MsG0580025555.01;Name=MsG0580025555.01
Chr5 mRNA 20426828 20428861 20426828 ID=MsG0580025555.01.T01;Parent=MsG0580025555.01;Name=MsG0580025555.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|677
Chr5 exon 20426828 20428861 20426828 ID=MsG0580025555.01.T01:exon:23296;Parent=MsG0580025555.01.T01
Chr5 CDS 20426828 20428861 20426828 ID=MsG0580025555.01.T01:cds;Parent=MsG0580025555.01.T01
Gene Sequence

>MsG0580025555.01.T01

ATGAATCTTTGGAGCGACGATAACTCTTCAGTAATGGAGGCTTTCATGACCTCCTCTGATTTATCAACCTTATGGCCACCAGCACCACCGTCACAACCACCACAAACCACCACCGGATTCAACCAAGACACTCTCCAACAACGTCTTCAAGCTTTAATCGAAGGCGCAAAAGAAGTCTGGACCTACGCTATTTTCTGGCAACCTTCTTACGACTATTCAGGTTCTTCGTTACTTGGTTGGGGTGATGGTTACTATAAAGGCGAAGAAGACAAAACAAAAGCGAAGAAATCAAAAGTTACTTCACCTGCTGAACAAGAACACCGGAGAAAAGTTCTTAGAGAACTTAATTCATTAATCTCCGGTAATCCGGTTACAGAAGAATCTCCTGTTGATGAAGAAGTTACTGATACGGAGTGGTTCTTTTTAGTTTCTATGACGCAGTCTTTTGTCAACGGAACTGGGCTGCCTGGACAAGCTTATTATAATTCAGCTCCGGTGTGGTTAACCGGAGCTGAAAATCTCGCCCTCTCAGCTTGTGAGAGGGCGAGACAAGGTCAAGAACATGGTATACAGACGCTGGCGTGTATACCATCGGCTGACGGTGTTTTGGAGCTTGGATCTACTGAGTTGATTTATCAGAATAATGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTTAACAATAATTTTGATTTTGGATCTTCTTGGCAGTTAGGTAATTCTGCCCATCATGGTGAGAATGATCCTTCTTCGATTTGGATTAACGATCCTGAAGCTAGAGATTCTGTTGATAATAATTCTCTTGTTACAACAACAACAACGGCAGCAACAAATGCTTCAATTTCAATTCCAAGTCACCAGCAGCACCAACAACAGAACAATAACAATAATCAGGGTTTGAGTGTGAGTGTGACGAAGACGATGCAATTTGAAACTCCTGGTTCGAGTACTTTAACGGAGGTTCCTAGTGTTGTTCATGTTTCAAGCAAGCAGAATGATCAAAGTTTCTTTTCTAAGGAAATGAATCTTTCTGATTATGGTGGTGGTAACAATCAGCAACGTTTGTTGAAGCCGGAATCCGGTGAGATTTTGTGTTTTGGTGAGAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAACTCGAATTCGAATTTCTTCTCTGGTCAATCACAGTTAGTTTCCGTTGCTGAGGAGAACAACAATGGGAACGGGAATGGGAATGGAAAGAGGAGATCACCGAATTCGAGAGGAAGCAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCACCAGGGGCGTCGAATTTGAAATTCTCTGGTGGTACTGGTGGTGGTGATTCGGACCATTCGGATCTGGAGGCTTCGGTGGTGAAGGAGGTGGATAGTAGTCGTGTGGTGGAGCCCGAAAAGAAGCCGAGGAAGAGAGGGAGGAAGCCGGCAAACGGAAGAGAGGAACCGTTGAATCATGTTGAAGCTGAGAGGCAAAGAAGAGAGAAGCTGAATCAAAGATTTTATGCACTTCGAGCAGTTGTTCCTAATGTTTCGAAGATGGATAAAGCCTCACTTTTGGGTGATGCTATATCTTACATTACTGAGTTGAAAACAAAGCTTCAGAAAACTGAATCTGATAAAGATGGATTAGAAAAGCAACTTGATGGGATGAAGAATGAGATTCAGAAAATCAACGAAAACCAGTCTCATCAGCCACCACAACAGCAGCAACAACAACAGCCTGTACCCAATAAACCCTCTTCGAATCAAGCTCTAATCGATTTAGATATCGACGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCGGCAGCGAGGTTAATGTCAGCGTTAATGGAGCTTGACCTAGAAGTGCACCATGCCAGTGTGTCTGTGGTAAATGATTTGATGATACAACAAGCAACCGTGAAAATGGGGAGTCGTTTTTACACTCAGGAGCAGCTTCGAGCGGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA

Protein sequence

>MsG0580025555.01.T01

MNLWSDDNSSVMEAFMTSSDLSTLWPPAPPSQPPQTTTGFNQDTLQQRLQALIEGAKEVWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKTKAKKSKVTSPAEQEHRRKVLRELNSLISGNPVTEESPVDEEVTDTEWFFLVSMTQSFVNGTGLPGQAYYNSAPVWLTGAENLALSACERARQGQEHGIQTLACIPSADGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGNSAHHGENDPSSIWINDPEARDSVDNNSLVTTTTTAATNASISIPSHQQHQQQNNNNNQGLSVSVTKTMQFETPGSSTLTEVPSVVHVSSKQNDQSFFSKEMNLSDYGGGNNQQRLLKPESGEILCFGESKKSSYVANNGNSNSNFFSGQSQLVSVAEENNNGNGNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPGASNLKFSGGTGGGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDGLEKQLDGMKNEIQKINENQSHQPPQQQQQQQPVPNKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAARLMSALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ*