Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043685.01.T01 | XP_003627885.2 | 98.047 | 256 | 5 | 0 | 1 | 256 | 84 | 339 | 3.22E-177 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043685.01.T01 | E4NKF8 | 29.108 | 213 | 133 | 7 | 5 | 214 | 486 | 683 | 2.73E-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043685.01.T01 | G7LGS1 | 98.047 | 256 | 5 | 0 | 1 | 256 | 84 | 339 | 1.54e-177 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000019.01 | MsG0880043685.01 | 0.842898 | 1.951594e-58 | 3.001785e-55 |
| MsG0180000089.01 | MsG0880043685.01 | 0.803059 | 4.176781e-49 | 2.078501e-46 |
| MsG0180001050.01 | MsG0880043685.01 | 0.809824 | 1.563418e-50 | 9.273738e-48 |
| MsG0180001053.01 | MsG0880043685.01 | 0.813149 | 2.962183e-51 | 1.919152e-48 |
| MsG0180002546.01 | MsG0880043685.01 | -0.800537 | 1.375609e-48 | 6.421239e-46 |
| MsG0180004110.01 | MsG0880043685.01 | 0.816680 | 4.881316e-52 | 3.481703e-49 |
| MsG0180004752.01 | MsG0880043685.01 | 0.851699 | 7.486699e-61 | 1.528074e-57 |
| MsG0180004867.01 | MsG0880043685.01 | 0.826791 | 2.235028e-54 | 2.117214e-51 |
| MsG0180006012.01 | MsG0880043685.01 | 0.871179 | 8.322990e-67 | 3.325496e-63 |
| MsG0780041380.01 | MsG0880043685.01 | 0.802154 | 6.417313e-49 | 3.120884e-46 |
| MsG0880041985.01 | MsG0880043685.01 | 0.838696 | 2.466198e-57 | 3.329472e-54 |
| MsG0880042494.01 | MsG0880043685.01 | 0.825862 | 3.717938e-54 | 3.430337e-51 |
| MsG0880042495.01 | MsG0880043685.01 | 0.810628 | 1.048948e-50 | 6.355073e-48 |
| MsG0880043285.01 | MsG0880043685.01 | 0.816248 | 6.099064e-52 | 4.299383e-49 |
| MsG0880043685.01 | MsG0880043715.01 | 0.906769 | 1.041477e-80 | 1.790337e-76 |
| MsG0880043685.01 | MsG0880044570.01 | 0.807383 | 5.191395e-50 | 2.887441e-47 |
| MsG0880043685.01 | MsG0880044669.01 | 0.802020 | 6.838176e-49 | 3.314185e-46 |
| MsG0880043685.01 | MsG0880045277.01 | 0.820170 | 7.902551e-53 | 6.206887e-50 |
| MsG0880043685.01 | MsG0880045907.01 | 0.820071 | 8.322646e-53 | 6.519293e-50 |
| MsG0880043685.01 | MsG0880046226.01 | 0.807837 | 4.158479e-50 | 2.340375e-47 |
| MsG0880043685.01 | MsG0880046251.01 | -0.801415 | 9.101629e-49 | 4.344031e-46 |
| MsG0880043685.01 | MsG0880047233.01 | 0.803754 | 2.997716e-49 | 1.518709e-46 |
| MsG0880043685.01 | MsG0880047486.01 | 0.823850 | 1.109047e-53 | 9.661781e-51 |
| MsG0880043685.01 | MsG0880047491.01 | 0.802231 | 6.187319e-49 | 3.014932e-46 |
| MsG0880043685.01 | MsG0880047531.01 | 0.810668 | 1.027973e-50 | 6.234802e-48 |
| MsG0280011041.01 | MsG0880043685.01 | 0.805178 | 1.512969e-49 | 7.951178e-47 |
| MsG0280011152.01 | MsG0880043685.01 | 0.836766 | 7.721747e-57 | 9.827737e-54 |
| MsG0280011473.01 | MsG0880043685.01 | 0.816305 | 5.920818e-52 | 4.180460e-49 |
| MsG0480018496.01 | MsG0880043685.01 | 0.814296 | 1.656432e-51 | 1.107199e-48 |
| MsG0480018500.01 | MsG0880043685.01 | 0.824440 | 8.061318e-54 | 7.140538e-51 |
| MsG0480019880.01 | MsG0880043685.01 | 0.847947 | 8.374155e-60 | 1.512747e-56 |
| MsG0480020444.01 | MsG0880043685.01 | 0.804583 | 2.015157e-49 | 1.042906e-46 |
| MsG0480021135.01 | MsG0880043685.01 | 0.819136 | 1.361013e-52 | 1.038534e-49 |
| MsG0480022125.01 | MsG0880043685.01 | 0.825155 | 5.467969e-54 | 4.944382e-51 |
| MsG0480022520.01 | MsG0880043685.01 | 0.800787 | 1.223574e-48 | 5.747640e-46 |
| MsG0480022671.01 | MsG0880043685.01 | 0.804758 | 1.852599e-49 | 9.631627e-47 |
| MsG0480022760.01 | MsG0880043685.01 | 0.810278 | 1.247838e-50 | 7.489956e-48 |
| MsG0480022974.01 | MsG0880043685.01 | 0.804643 | 1.957524e-49 | 1.014650e-46 |
| MsG0580024871.01 | MsG0880043685.01 | 0.817308 | 3.527074e-52 | 2.559370e-49 |
| MsG0580024999.01 | MsG0880043685.01 | 0.867955 | 9.340766e-66 | 3.320805e-62 |
| MsG0380016926.01 | MsG0880043685.01 | 0.808119 | 3.621628e-50 | 2.053474e-47 |
| MsG0580027073.01 | MsG0880043685.01 | 0.839661 | 1.386150e-57 | 1.927294e-54 |
| MsG0580027227.01 | MsG0880043685.01 | 0.836691 | 8.066690e-57 | 1.024338e-53 |
| MsG0580028355.01 | MsG0880043685.01 | 0.837348 | 5.481801e-57 | 7.100397e-54 |
| MsG0580028560.01 | MsG0880043685.01 | 0.853976 | 1.673304e-61 | 3.680931e-58 |
| MsG0580028999.01 | MsG0880043685.01 | 0.815219 | 1.034377e-51 | 7.088206e-49 |
| MsG0580029798.01 | MsG0880043685.01 | 0.814170 | 1.765394e-51 | 1.175981e-48 |
| MsG0580029901.01 | MsG0880043685.01 | 0.836637 | 8.326482e-57 | 1.055496e-53 |
| MsG0280007840.01 | MsG0880043685.01 | 0.811862 | 5.662069e-51 | 3.544300e-48 |
| MsG0280009394.01 | MsG0880043685.01 | 0.837128 | 6.239607e-57 | 8.028041e-54 |
| MsG0680035741.01 | MsG0880043685.01 | 0.803352 | 3.631445e-49 | 1.820788e-46 |
| MsG0780037599.01 | MsG0880043685.01 | 0.829308 | 5.534712e-55 | 5.644174e-52 |
| MsG0780038123.01 | MsG0880043685.01 | 0.817528 | 3.146409e-52 | 2.297033e-49 |
| MsG0780039450.01 | MsG0880043685.01 | 0.812730 | 3.659666e-51 | 2.344887e-48 |
| MsG0780039472.01 | MsG0880043685.01 | 0.815681 | 8.161754e-52 | 5.664926e-49 |
| MsG0780039877.01 | MsG0880043685.01 | 0.840849 | 6.787049e-58 | 9.791965e-55 |
| MsG0780040144.01 | MsG0880043685.01 | 0.870597 | 1.294453e-66 | 5.064053e-63 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004421.01 | MsG0880043685.01 | PPI |
| MsG0780041704.01 | MsG0880043685.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043685.01.T01 | MTR_8g039560 | 98.047 | 256 | 5 | 0 | 1 | 256 | 84 | 339 | 0.0 | 501 |
| MsG0880043685.01.T01 | MTR_5g083030 | 29.108 | 213 | 133 | 7 | 5 | 214 | 486 | 683 | 2.65e-15 | 75.5 |
| MsG0880043685.01.T01 | MTR_2g018010 | 32.105 | 190 | 118 | 5 | 25 | 214 | 495 | 673 | 1.07e-13 | 70.9 |
| MsG0880043685.01.T01 | MTR_4g485520 | 29.412 | 187 | 119 | 7 | 25 | 211 | 470 | 643 | 6.81e-11 | 62.4 |
| MsG0880043685.01.T01 | MTR_4g485520 | 29.412 | 187 | 119 | 7 | 25 | 211 | 302 | 475 | 7.39e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043685.01.T01 | AT1G08315 | 57.534 | 219 | 88 | 2 | 1 | 215 | 85 | 302 | 5.24e-82 | 249 |
| MsG0880043685.01.T01 | AT2G23140 | 30.435 | 207 | 126 | 7 | 5 | 211 | 435 | 623 | 2.66e-14 | 72.8 |
| MsG0880043685.01.T01 | AT2G23140 | 30.435 | 207 | 126 | 7 | 5 | 211 | 435 | 623 | 2.66e-14 | 72.8 |
| MsG0880043685.01.T01 | AT2G23140 | 30.918 | 207 | 125 | 7 | 5 | 211 | 624 | 812 | 6.68e-14 | 71.6 |
| MsG0880043685.01.T01 | AT2G23140 | 30.918 | 207 | 125 | 7 | 5 | 211 | 624 | 812 | 6.68e-14 | 71.6 |
| MsG0880043685.01.T01 | AT2G23140 | 30.918 | 207 | 125 | 7 | 5 | 211 | 627 | 815 | 6.75e-14 | 71.6 |
| MsG0880043685.01.T01 | AT1G29340 | 30.252 | 238 | 150 | 7 | 8 | 244 | 490 | 712 | 1.43e-12 | 67.4 |
| MsG0880043685.01.T01 | AT1G23030 | 29.474 | 190 | 122 | 6 | 25 | 214 | 430 | 607 | 1.04e-11 | 65.1 |
Find 68 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGGTGGTTCGATATT+TGG | 0.196098 | 8:+29119429 | MsG0880043685.01.T01:exon |
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8:+29119055 | MsG0880043685.01.T01:CDS |
| TGAATGGTGGTTCGTCGTTT+TGG | 0.311645 | 8:+29119486 | MsG0880043685.01.T01:three_prime_UTR |
| ACATCTCTGATTCAGGTTGC+TGG | 0.314487 | 8:+29119016 | MsG0880043685.01.T01:intron |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 8:+29119235 | MsG0880043685.01.T01:CDS |
| TTTCGTCGGTGGATGATTAT+CGG | 0.349847 | 8:+29118167 | MsG0880043685.01.T01:CDS |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8:+29119373 | MsG0880043685.01.T01:CDS |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8:+29118333 | MsG0880043685.01.T01:CDS |
| AAAGATAAAGGAAGTGTTAA+GGG | 0.391288 | 8:+29119247 | MsG0880043685.01.T01:CDS |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8:-29118119 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8:-29118122 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8:+29119061 | MsG0880043685.01.T01:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.422699 | 8:+29119246 | MsG0880043685.01.T01:CDS |
| CGCGGTGGCGTTTGGTGCGA+TGG | 0.437208 | 8:+29119207 | MsG0880043685.01.T01:CDS |
| AACGAATCTTTCACCGTCCT+AGG | 0.438329 | 8:-29118262 | None:intergenic |
| AATCATCCACCGACGAAAGA+AGG | 0.447664 | 8:-29118162 | None:intergenic |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8:+29119199 | MsG0880043685.01.T01:CDS |
| TTGCTACTGGTTCGAGTATG+AGG | 0.451497 | 8:+29119107 | MsG0880043685.01.T01:CDS |
| GGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 8:+29119069 | MsG0880043685.01.T01:CDS |
| GATGATTATCGGACTGTTGT+TGG | 0.454158 | 8:+29118178 | MsG0880043685.01.T01:CDS |
| AAGTGTTAAGGGGCAGAGTA+AGG | 0.459646 | 8:+29119258 | MsG0880043685.01.T01:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8:+29119048 | MsG0880043685.01.T01:CDS |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8:-29118116 | None:intergenic |
| ATTGTTAATGATGGTAGAGT+AGG | 0.470952 | 8:+29118370 | MsG0880043685.01.T01:CDS |
| TTGTTAATGATGGTAGAGTA+GGG | 0.494346 | 8:+29118371 | MsG0880043685.01.T01:CDS |
| TGCTTCCGCGGTTATTGCGC+AGG | 0.502926 | 8:+29118405 | MsG0880043685.01.T01:CDS |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8:+29118322 | MsG0880043685.01.T01:CDS |
| GTGGCGTTTGGTGCGATGGA+TGG | 0.506730 | 8:+29119211 | MsG0880043685.01.T01:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.510558 | 8:+29119113 | MsG0880043685.01.T01:CDS |
| GTTCGTAGTCACGGTAATGT+TGG | 0.512410 | 8:+29119349 | MsG0880043685.01.T01:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8:+29118312 | MsG0880043685.01.T01:CDS |
| TCTTTCATGAATGAAGATAG+TGG | 0.538879 | 8:+29119397 | MsG0880043685.01.T01:CDS |
| TCACAGCCTTCTTTCGTCGG+TGG | 0.538956 | 8:+29118156 | MsG0880043685.01.T01:CDS |
| GACGAGGGAAAATGCGGTGT+CGG | 0.541817 | 8:+29119129 | MsG0880043685.01.T01:CDS |
| CACGGTGATGTTCGTAGTGA+TGG | 0.549767 | 8:+29119322 | MsG0880043685.01.T01:CDS |
| GATTCACAGCCTTCTTTCGT+CGG | 0.551912 | 8:+29118153 | MsG0880043685.01.T01:CDS |
| GATTCAGGTTGCTGGTTGCG+AGG | 0.557678 | 8:+29119024 | MsG0880043685.01.T01:intron |
| CGCGTCGAGAACACCGCGCG+TGG | 0.558608 | 8:-29118062 | None:intergenic |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 8:+29119165 | MsG0880043685.01.T01:CDS |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8:-29118313 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 8:+29119157 | MsG0880043685.01.T01:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 8:+29119154 | MsG0880043685.01.T01:CDS |
| GATCTACTAGATCTTGCTAC+TGG | 0.569155 | 8:+29119094 | MsG0880043685.01.T01:CDS |
| GCTGTGAATCGTAGCGGCGG+CGG | 0.577574 | 8:-29118140 | None:intergenic |
| CCGTCCTAGGCGGTGAAGAA+CGG | 0.579334 | 8:-29118249 | None:intergenic |
| GTCACCGTTCTTCACCGCCT+AGG | 0.589077 | 8:+29118245 | MsG0880043685.01.T01:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8:+29119286 | MsG0880043685.01.T01:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8:-29118125 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8:+29119304 | MsG0880043685.01.T01:CDS |
| TTCTGGTGTTGGAGTGCTGG+CGG | 0.604498 | 8:+29119072 | MsG0880043685.01.T01:CDS |
| AAGATAAAGGAAGTGTTAAG+GGG | 0.604994 | 8:+29119248 | MsG0880043685.01.T01:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 8:+29119168 | MsG0880043685.01.T01:CDS |
| TATGAGGACGAGGGAAAATG+CGG | 0.612956 | 8:+29119123 | MsG0880043685.01.T01:CDS |
| CCGTTCTTCACCGCCTAGGA+CGG | 0.615036 | 8:+29118249 | MsG0880043685.01.T01:CDS |
| GATGGTGATGTTCGTAGTCA+CGG | 0.622057 | 8:+29119340 | MsG0880043685.01.T01:CDS |
| GATTGTTGAAGATGCTTCCG+CGG | 0.638020 | 8:+29118393 | MsG0880043685.01.T01:CDS |
| TCTTTGATGAATGAAGATAG+TGG | 0.653648 | 8:+29119453 | MsG0880043685.01.T01:three_prime_UTR |
| AATAACCTGCGCAATAACCG+CGG | 0.661300 | 8:-29118410 | None:intergenic |
| GAATCTTTCACCGTCCTAGG+CGG | 0.666090 | 8:-29118259 | None:intergenic |
| AAGGCTGTGAATCGTAGCGG+CGG | 0.667512 | 8:-29118143 | None:intergenic |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8:-29118128 | None:intergenic |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 8:+29119036 | MsG0880043685.01.T01:CDS |
| TGAAGATGTAAGAGACGCGG+TGG | 0.675343 | 8:+29119192 | MsG0880043685.01.T01:CDS |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8:-29118352 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8:+29118049 | None:intergenic |
| AAGAAGGCTGTGAATCGTAG+CGG | 0.707499 | 8:-29118146 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8:+29119114 | MsG0880043685.01.T01:CDS |
| GGCTGAAGATGTAAGAGACG+CGG | 0.742618 | 8:+29119189 | MsG0880043685.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTGAATTAAATTAA+GGG | + | Chr8:29118481-29118500 | MsG0880043685.01.T01:intron | 15.0% |
| !! | CTATCTTATTATATTACTTA+GGG | - | Chr8:29118943-29118962 | None:intergenic | 15.0% |
| !!! | TAAGAGTTAATTATTTTAAC+TGG | - | Chr8:29118966-29118985 | None:intergenic | 15.0% |
| !! | AAAAAGCTCATTAATTGAAA+AGG | + | Chr8:29119660-29119679 | MsG0880043685.01.T01:three_prime_UTR | 20.0% |
| !! | GAAGAAGTTGAATTAAATTA+AGG | + | Chr8:29118480-29118499 | MsG0880043685.01.T01:intron | 20.0% |
| !! | GCTATCTTATTATATTACTT+AGG | - | Chr8:29118944-29118963 | None:intergenic | 20.0% |
| !! | TATTCATAAGTTATGAAACA+CGG | - | Chr8:29118796-29118815 | None:intergenic | 20.0% |
| ! | AAGTAATACAATGTGATAGT+CGG | + | Chr8:29118892-29118911 | MsG0880043685.01.T01:intron | 25.0% |
| ! | ACTATCACATTGTATTACTT+GGG | - | Chr8:29118892-29118911 | None:intergenic | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | Chr8:29119235-29119254 | MsG0880043685.01.T01:CDS | 25.0% |
| ! | TAGAACAACTAACTCTTAAA+CGG | + | Chr8:29118916-29118935 | MsG0880043685.01.T01:intron | 25.0% |
| ! | TTCTGTGTAATTATATGTGT+CGG | + | Chr8:29118704-29118723 | MsG0880043685.01.T01:intron | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | + | Chr8:29119247-29119266 | MsG0880043685.01.T01:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | Chr8:29119246-29119265 | MsG0880043685.01.T01:CDS | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | + | Chr8:29118361-29118380 | MsG0880043685.01.T01:CDS | 25.0% |
| AGAACAACTAACTCTTAAAC+GGG | + | Chr8:29118917-29118936 | MsG0880043685.01.T01:intron | 30.0% | |
| ATTGTTAATGATGGTAGAGT+AGG | + | Chr8:29118370-29118389 | MsG0880043685.01.T01:CDS | 30.0% | |
| CTATCACATTGTATTACTTG+GGG | - | Chr8:29118891-29118910 | None:intergenic | 30.0% | |
| CTTCAAATTATTAGCAGTGT+CGG | - | Chr8:29118673-29118692 | None:intergenic | 30.0% | |
| GACTATCACATTGTATTACT+TGG | - | Chr8:29118893-29118912 | None:intergenic | 30.0% | |
| TAAACTGTTATGCTTAAGCT+CGG | + | Chr8:29118837-29118856 | MsG0880043685.01.T01:intron | 30.0% | |
| TCTTTCATGAATGAAGATAG+TGG | + | Chr8:29119397-29119416 | MsG0880043685.01.T01:CDS | 30.0% | |
| TCTTTGATGAATGAAGATAG+TGG | + | Chr8:29119453-29119472 | MsG0880043685.01.T01:three_prime_UTR | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | + | Chr8:29118371-29118390 | MsG0880043685.01.T01:CDS | 30.0% | |
| ! | AACTTTTACATCTCTGATTC+AGG | + | Chr8:29119009-29119028 | MsG0880043685.01.T01:intron | 30.0% |
| ! | TTTCATAAACTAGCTTGACA+AGG | + | Chr8:29118593-29118612 | MsG0880043685.01.T01:intron | 30.0% |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | + | Chr8:29119248-29119267 | MsG0880043685.01.T01:CDS | 30.0% |
| AAGATTAGACGTCACATTGT+CGG | - | Chr8:29118765-29118784 | None:intergenic | 35.0% | |
| ACAATGTGACGTCTAATCTT+AGG | + | Chr8:29118765-29118784 | MsG0880043685.01.T01:intron | 35.0% | |
| ATTGTATTACTTGGGGCTTA+GGG | - | Chr8:29118884-29118903 | None:intergenic | 35.0% | |
| TTGAATAGTGATTCGTCGTT+TGG | + | Chr8:29119373-29119392 | MsG0880043685.01.T01:CDS | 35.0% | |
| TTGAATGGTGGTTCGATATT+TGG | + | Chr8:29119429-29119448 | MsG0880043685.01.T01:exon | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | + | Chr8:29119154-29119173 | MsG0880043685.01.T01:CDS | 35.0% | |
| ! | CTCTTGGTGAAATGAGTTTT+AGG | + | Chr8:29119510-29119529 | MsG0880043685.01.T01:three_prime_UTR | 35.0% |
| !! | TAGTGGTACATCGTTTTGAA+TGG | + | Chr8:29119470-29119489 | MsG0880043685.01.T01:three_prime_UTR | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | + | Chr8:29119061-29119080 | MsG0880043685.01.T01:CDS | 35.0% |
| !!! | TGAAATGAGTTTTAGGTTGG+CGG | + | Chr8:29119517-29119536 | MsG0880043685.01.T01:three_prime_UTR | 35.0% |
| !!! | TGGTGAAATGAGTTTTAGGT+TGG | + | Chr8:29119514-29119533 | MsG0880043685.01.T01:three_prime_UTR | 35.0% |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | Chr8:29119282-29119301 | MsG0880043685.01.T01:CDS | 35.0% |
| AAGGTTATGAAGCACGGATA+CGG | + | Chr8:29118612-29118631 | MsG0880043685.01.T01:intron | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | - | Chr8:29118355-29118374 | None:intergenic | 40.0% | |
| CATTGTATTACTTGGGGCTT+AGG | - | Chr8:29118885-29118904 | None:intergenic | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | + | Chr8:29119157-29119176 | MsG0880043685.01.T01:CDS | 40.0% | |
| CTTGACAAGGTTATGAAGCA+CGG | + | Chr8:29118606-29118625 | MsG0880043685.01.T01:intron | 40.0% | |
| GATCTACTAGATCTTGCTAC+TGG | + | Chr8:29119094-29119113 | MsG0880043685.01.T01:CDS | 40.0% | |
| GATGATTATCGGACTGTTGT+TGG | + | Chr8:29118178-29118197 | MsG0880043685.01.T01:CDS | 40.0% | |
| TTTCGTCGGTGGATGATTAT+CGG | + | Chr8:29118167-29118186 | MsG0880043685.01.T01:CDS | 40.0% | |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | + | Chr8:29119048-29119067 | MsG0880043685.01.T01:CDS | 40.0% |
| !! | TAGTGGTACGTCGTTTTGAA+TGG | + | Chr8:29119414-29119433 | MsG0880043685.01.T01:exon | 40.0% |
| !! | TGGTACATCGTTTTGAATGG+TGG | + | Chr8:29119473-29119492 | MsG0880043685.01.T01:three_prime_UTR | 40.0% |
| AACGAATCTTTCACCGTCCT+AGG | - | Chr8:29118265-29118284 | None:intergenic | 45.0% | |
| AAGAAGGCTGTGAATCGTAG+CGG | - | Chr8:29118149-29118168 | None:intergenic | 45.0% | |
| AAGTGTTAAGGGGCAGAGTA+AGG | + | Chr8:29119258-29119277 | MsG0880043685.01.T01:CDS | 45.0% | |
| AATAACCTGCGCAATAACCG+CGG | - | Chr8:29118413-29118432 | None:intergenic | 45.0% | |
| AATCATCCACCGACGAAAGA+AGG | - | Chr8:29118165-29118184 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | - | Chr8:29118316-29118335 | None:intergenic | 45.0% | |
| GATTCACAGCCTTCTTTCGT+CGG | + | Chr8:29118153-29118172 | MsG0880043685.01.T01:CDS | 45.0% | |
| GATTGTTGAAGATGCTTCCG+CGG | + | Chr8:29118393-29118412 | MsG0880043685.01.T01:CDS | 45.0% | |
| GTTCGTAGTCACGGTAATGT+TGG | + | Chr8:29119349-29119368 | MsG0880043685.01.T01:CDS | 45.0% | |
| TATGAGGACGAGGGAAAATG+CGG | + | Chr8:29119123-29119142 | MsG0880043685.01.T01:CDS | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | + | Chr8:29119055-29119074 | MsG0880043685.01.T01:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTCA+CGG | + | Chr8:29119340-29119359 | MsG0880043685.01.T01:CDS | 45.0% |
| ! | TGAATGGTGGTTCGTCGTTT+TGG | + | Chr8:29119486-29119505 | MsG0880043685.01.T01:three_prime_UTR | 45.0% |
| !! | ACATCTCTGATTCAGGTTGC+TGG | + | Chr8:29119016-29119035 | MsG0880043685.01.T01:intron | 45.0% |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | Chr8:29119286-29119305 | MsG0880043685.01.T01:CDS | 45.0% |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | + | Chr8:29118333-29118352 | MsG0880043685.01.T01:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | Chr8:29119304-29119323 | MsG0880043685.01.T01:CDS | 45.0% |
| !! | TGGTACGTCGTTTTGAATGG+TGG | + | Chr8:29119417-29119436 | MsG0880043685.01.T01:exon | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | + | Chr8:29119107-29119126 | MsG0880043685.01.T01:CDS | 45.0% |
| ATGAAGCACGGATACGGACA+TGG | + | Chr8:29118618-29118637 | MsG0880043685.01.T01:intron | 50.0% | |
| CACGGTGATGTTCGTAGTGA+TGG | + | Chr8:29119322-29119341 | MsG0880043685.01.T01:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | + | Chr8:29118322-29118341 | MsG0880043685.01.T01:CDS | 50.0% | |
| GAATCTTTCACCGTCCTAGG+CGG | - | Chr8:29118262-29118281 | None:intergenic | 50.0% | |
| GGCTGAAGATGTAAGAGACG+CGG | + | Chr8:29119189-29119208 | MsG0880043685.01.T01:CDS | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | + | Chr8:29118312-29118331 | MsG0880043685.01.T01:CDS | 50.0% | |
| TGAAGATGTAAGAGACGCGG+TGG | + | Chr8:29119192-29119211 | MsG0880043685.01.T01:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | + | Chr8:29119114-29119133 | MsG0880043685.01.T01:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | Chr8:29119165-29119184 | MsG0880043685.01.T01:CDS | 50.0% |
| !! | GGTTCGTCGTTTTGGTCTCT+TGG | + | Chr8:29119494-29119513 | MsG0880043685.01.T01:three_prime_UTR | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | + | Chr8:29119036-29119055 | MsG0880043685.01.T01:CDS | 50.0% |
| AAGGCTGTGAATCGTAGCGG+CGG | - | Chr8:29118146-29118165 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+CGG | + | Chr8:29118625-29118644 | MsG0880043685.01.T01:intron | 55.0% | |
| CTTGGGGCTTAGGGTCTGTT+TGG | - | Chr8:29118875-29118894 | None:intergenic | 55.0% | |
| GACGAGGGAAAATGCGGTGT+CGG | + | Chr8:29119129-29119148 | MsG0880043685.01.T01:CDS | 55.0% | |
| GTCAGTGTCCATGTCATGCC+CGG | - | Chr8:29118647-29118666 | None:intergenic | 55.0% | |
| TCACAGCCTTCTTTCGTCGG+TGG | + | Chr8:29118156-29118175 | MsG0880043685.01.T01:CDS | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | + | Chr8:29119113-29119132 | MsG0880043685.01.T01:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | Chr8:29119168-29119187 | MsG0880043685.01.T01:CDS | 55.0% |
| !! | GATTCAGGTTGCTGGTTGCG+AGG | + | Chr8:29119024-29119043 | MsG0880043685.01.T01:intron | 55.0% |
| !! | GGTTTCTGGTGTTGGAGTGC+TGG | + | Chr8:29119069-29119088 | MsG0880043685.01.T01:CDS | 55.0% |
| !! | TTCTGGTGTTGGAGTGCTGG+CGG | + | Chr8:29119072-29119091 | MsG0880043685.01.T01:CDS | 55.0% |
| CATGGACACCGGGCATGACA+TGG | + | Chr8:29118636-29118655 | MsG0880043685.01.T01:intron | 60.0% | |
| CCGTCCTAGGCGGTGAAGAA+CGG | - | Chr8:29118252-29118271 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCTAGGA+CGG | + | Chr8:29118249-29118268 | MsG0880043685.01.T01:CDS | 60.0% | |
| CGGATACGGACATGGACACC+GGG | + | Chr8:29118626-29118645 | MsG0880043685.01.T01:intron | 60.0% | |
| GTAAGAGACGCGGTGGCGTT+TGG | + | Chr8:29119199-29119218 | MsG0880043685.01.T01:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCT+AGG | + | Chr8:29118245-29118264 | MsG0880043685.01.T01:CDS | 60.0% | |
| TGCTTCCGCGGTTATTGCGC+AGG | + | Chr8:29118405-29118424 | MsG0880043685.01.T01:CDS | 60.0% | |
| ! | GTGTCGTGTTGCGTCGGTGT+CGG | + | Chr8:29118726-29118745 | MsG0880043685.01.T01:intron | 60.0% |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | + | Chr8:29119211-29119230 | MsG0880043685.01.T01:CDS | 60.0% |
| !! | GTGTCGGTGTCGTGTTGCGT+CGG | + | Chr8:29118720-29118739 | MsG0880043685.01.T01:intron | 60.0% |
| GCTGTGAATCGTAGCGGCGG+CGG | - | Chr8:29118143-29118162 | None:intergenic | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | - | Chr8:29118131-29118150 | None:intergenic | 65.0% |
| GGATTGAACAGCGGCGGCGG+CGG | - | Chr8:29118122-29118141 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | + | Chr8:29119207-29119226 | MsG0880043685.01.T01:CDS | 70.0% |
| !! | GGCGGATTGAACAGCGGCGG+CGG | - | Chr8:29118125-29118144 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | - | Chr8:29118128-29118147 | None:intergenic | 70.0% |
| CGCGTCGAGAACACCGCGCG+TGG | - | Chr8:29118065-29118084 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | - | Chr8:29118119-29118138 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 29118058 | 29119688 | 29118058 | ID=MsG0880043685.01;Name=MsG0880043685.01 |
| Chr8 | mRNA | 29118058 | 29119688 | 29118058 | ID=MsG0880043685.01.T01;Parent=MsG0880043685.01;Name=MsG0880043685.01.T01;_AED=0.48;_eAED=0.48;_QI=0|1|0.5|1|1|1|2|256|256 |
| Chr8 | exon | 29118058 | 29118426 | 29118058 | ID=MsG0880043685.01.T01:exon:4477;Parent=MsG0880043685.01.T01 |
| Chr8 | exon | 29119031 | 29119688 | 29119031 | ID=MsG0880043685.01.T01:exon:4478;Parent=MsG0880043685.01.T01 |
| Chr8 | CDS | 29118058 | 29118426 | 29118058 | ID=MsG0880043685.01.T01:cds;Parent=MsG0880043685.01.T01 |
| Chr8 | CDS | 29119031 | 29119432 | 29119031 | ID=MsG0880043685.01.T01:cds;Parent=MsG0880043685.01.T01 |
| Chr8 | three_prime_UTR | 29119433 | 29119688 | 29119433 | ID=MsG0880043685.01.T01:three_prime_utr;Parent=MsG0880043685.01.T01 |
| Gene Sequence |
| Protein sequence |
