Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017992.01.T01 | XP_003603905.1 | 84.985 | 333 | 41 | 3 | 1 | 330 | 33 | 359 | 0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017992.01.T01 | P17772 | 63.333 | 120 | 44 | 0 | 211 | 330 | 62 | 181 | 6.03E-44 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017992.01.T01 | G7J6J7 | 84.985 | 333 | 41 | 3 | 1 | 330 | 33 | 359 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048509.01 | MsG0380017992.01 | 0.834783 | 2.454585e-56 | 2.942790e-53 |
| MsG0080048633.01 | MsG0380017992.01 | 0.846189 | 2.540052e-59 | 4.336388e-56 |
| MsG0080048652.01 | MsG0380017992.01 | 0.834411 | 3.045244e-56 | 3.611064e-53 |
| MsG0180002808.01 | MsG0380017992.01 | 0.822523 | 2.263111e-53 | 1.898926e-50 |
| MsG0180003375.01 | MsG0380017992.01 | 0.802231 | 6.189297e-49 | 3.015835e-46 |
| MsG0180003484.01 | MsG0380017992.01 | 0.800050 | 1.728450e-48 | 7.969209e-46 |
| MsG0180003504.01 | MsG0380017992.01 | 0.801885 | 7.290544e-49 | 3.521479e-46 |
| MsG0180003849.01 | MsG0380017992.01 | 0.808743 | 2.665444e-50 | 1.536167e-47 |
| MsG0180004705.01 | MsG0380017992.01 | 0.804951 | 1.687757e-49 | 8.818700e-47 |
| MsG0180005369.01 | MsG0380017992.01 | -0.812229 | 4.709317e-51 | 2.977577e-48 |
| MsG0180006182.01 | MsG0380017992.01 | 0.826731 | 2.310177e-54 | 2.184636e-51 |
| MsG0180006191.01 | MsG0380017992.01 | 0.849339 | 3.445214e-60 | 6.511185e-57 |
| MsG0280006316.01 | MsG0380017992.01 | 0.827227 | 1.757638e-54 | 1.686412e-51 |
| MsG0280010617.01 | MsG0380017992.01 | 0.804475 | 2.122311e-49 | 1.095287e-46 |
| MsG0280011267.01 | MsG0380017992.01 | 0.813571 | 2.393019e-51 | 1.568373e-48 |
| MsG0280011269.01 | MsG0380017992.01 | 0.805811 | 1.114717e-49 | 5.954357e-47 |
| MsG0380012900.01 | MsG0380017992.01 | 0.807919 | 3.994679e-50 | 2.252963e-47 |
| MsG0380013041.01 | MsG0380017992.01 | 0.817346 | 3.459288e-52 | 2.512851e-49 |
| MsG0380013226.01 | MsG0380017992.01 | 0.810414 | 1.166397e-50 | 7.026258e-48 |
| MsG0380013415.01 | MsG0380017992.01 | 0.852938 | 3.322485e-61 | 7.058085e-58 |
| MsG0380016110.01 | MsG0380017992.01 | 0.800589 | 1.342440e-48 | 6.274825e-46 |
| MsG0380016112.01 | MsG0380017992.01 | 0.809907 | 1.500465e-50 | 8.919691e-48 |
| MsG0380017102.01 | MsG0380017992.01 | 0.804851 | 1.771057e-49 | 9.230172e-47 |
| MsG0380017898.01 | MsG0380017992.01 | 0.821795 | 3.339598e-53 | 2.744495e-50 |
| MsG0380017989.01 | MsG0380017992.01 | 0.823765 | 1.161108e-53 | 1.009174e-50 |
| MsG0380017992.01 | MsG0480018622.01 | 0.812550 | 4.006391e-51 | 2.554971e-48 |
| MsG0380017992.01 | MsG0480018767.01 | 0.815440 | 9.234531e-52 | 6.367272e-49 |
| MsG0380017992.01 | MsG0480019666.01 | 0.814760 | 1.307640e-51 | 8.850348e-49 |
| MsG0380017992.01 | MsG0480021129.01 | 0.832151 | 1.113386e-55 | 1.233829e-52 |
| MsG0380017992.01 | MsG0480022298.01 | 0.819772 | 9.746100e-53 | 7.570512e-50 |
| MsG0380017992.01 | MsG0480022428.01 | 0.817299 | 3.544360e-52 | 2.571290e-49 |
| MsG0380017992.01 | MsG0480023195.01 | 0.848268 | 6.829945e-60 | 1.246476e-56 |
| MsG0380017992.01 | MsG0480023322.01 | 0.874908 | 4.674290e-68 | 2.141690e-64 |
| MsG0380017992.01 | MsG0580025007.01 | 0.803021 | 4.253056e-49 | 2.114375e-46 |
| MsG0380017992.01 | MsG0580025023.01 | 0.827325 | 1.665141e-54 | 1.602390e-51 |
| MsG0380017992.01 | MsG0580025117.01 | 0.803095 | 4.105654e-49 | 2.044970e-46 |
| MsG0380017992.01 | MsG0580026311.01 | 0.852459 | 4.552301e-61 | 9.518385e-58 |
| MsG0380017992.01 | MsG0580028302.01 | 0.814248 | 1.697100e-51 | 1.132891e-48 |
| MsG0380017992.01 | MsG0580028565.01 | 0.845658 | 3.540759e-59 | 5.943206e-56 |
| MsG0380017992.01 | MsG0580030179.01 | 0.804197 | 2.424766e-49 | 1.242461e-46 |
| MsG0380017992.01 | MsG0680030296.01 | 0.803837 | 2.881285e-49 | 1.462878e-46 |
| MsG0380017992.01 | MsG0680031841.01 | 0.830442 | 2.929703e-55 | 3.086900e-52 |
| MsG0380017992.01 | MsG0680034415.01 | 0.814098 | 1.831502e-51 | 1.217631e-48 |
| MsG0380017992.01 | MsG0780036480.01 | 0.801862 | 7.369628e-49 | 3.557560e-46 |
| MsG0380017992.01 | MsG0780036890.01 | 0.819112 | 1.377620e-52 | 1.050595e-49 |
| MsG0380017992.01 | MsG0780038307.01 | 0.814347 | 1.613900e-51 | 1.080248e-48 |
| MsG0380017992.01 | MsG0780038810.01 | 0.804896 | 1.733510e-49 | 9.045273e-47 |
| MsG0380017992.01 | MsG0780039237.01 | 0.806996 | 6.272161e-50 | 3.453459e-47 |
| MsG0380017992.01 | MsG0780039916.01 | 0.861068 | 1.330396e-63 | 3.716409e-60 |
| MsG0380017992.01 | MsG0780039923.01 | 0.840675 | 7.538244e-58 | 1.081654e-54 |
| MsG0380017992.01 | MsG0780040118.01 | 0.808281 | 3.345489e-50 | 1.905080e-47 |
| MsG0380017992.01 | MsG0780041036.01 | 0.806848 | 6.739128e-50 | 3.696640e-47 |
| MsG0380017992.01 | MsG0780041100.01 | 0.836091 | 1.146505e-56 | 1.429929e-53 |
| MsG0380017992.01 | MsG0780041180.01 | 0.834425 | 3.020395e-56 | 3.583141e-53 |
| MsG0380017992.01 | MsG0880042122.01 | 0.836795 | 7.587732e-57 | 9.665839e-54 |
| MsG0380017992.01 | MsG0880042633.01 | 0.846227 | 2.479466e-59 | 4.238318e-56 |
| MsG0380017992.01 | MsG0880042635.01 | 0.856766 | 2.577324e-62 | 6.217326e-59 |
| MsG0380017992.01 | MsG0880043550.01 | 0.812879 | 3.394260e-51 | 2.183326e-48 |
| MsG0380017992.01 | MsG0880043948.01 | 0.819660 | 1.033642e-52 | 8.003663e-50 |
| MsG0380017992.01 | MsG0880043953.01 | 0.807335 | 5.314069e-50 | 2.952015e-47 |
| MsG0380017992.01 | MsG0880043961.01 | 0.813270 | 2.786482e-51 | 1.811304e-48 |
| MsG0380017992.01 | MsG0880043983.01 | 0.820700 | 5.971778e-53 | 4.759474e-50 |
| MsG0380017992.01 | MsG0880043989.01 | 0.805448 | 1.328175e-49 | 7.028660e-47 |
| MsG0380017992.01 | MsG0880044688.01 | 0.813990 | 1.935214e-51 | 1.282775e-48 |
| MsG0380017992.01 | MsG0880045503.01 | 0.811048 | 8.506220e-51 | 5.211715e-48 |
| MsG0380017992.01 | MsG0880045802.01 | 0.831240 | 1.867583e-55 | 2.014612e-52 |
| MsG0380017992.01 | MsG0880045851.01 | 0.802816 | 4.687935e-49 | 2.318753e-46 |
| MsG0380017992.01 | MsG0880045852.01 | 0.838633 | 2.561608e-57 | 3.451659e-54 |
| MsG0380017992.01 | MsG0880045854.01 | 0.845877 | 3.087931e-59 | 5.220105e-56 |
| MsG0380017992.01 | MsG0880045856.01 | 0.832056 | 1.175201e-55 | 1.298826e-52 |
| MsG0380017992.01 | MsG0880046137.01 | 0.873502 | 1.399311e-67 | 6.087635e-64 |
| MsG0380017992.01 | MsG0880046693.01 | 0.803429 | 3.501694e-49 | 1.759255e-46 |
| MsG0380017992.01 | MsG0880046945.01 | 0.817790 | 2.747207e-52 | 2.020085e-49 |
| MsG0380017992.01 | MsG0880047450.01 | 0.806570 | 7.714938e-50 | 4.201576e-47 |
| MsG0380017992.01 | MsG0880047714.01 | 0.815166 | 1.062524e-51 | 7.270669e-49 |
| MsG0280007281.01 | MsG0380017992.01 | 0.817438 | 3.298220e-52 | 2.401976e-49 |
| MsG0280007786.01 | MsG0380017992.01 | 0.805629 | 1.217273e-49 | 6.471729e-47 |
| MsG0280008226.01 | MsG0380017992.01 | 0.801880 | 7.306414e-49 | 3.528736e-46 |
| MsG0280008692.01 | MsG0380017992.01 | 0.808349 | 3.236040e-50 | 1.846032e-47 |
| MsG0280009526.01 | MsG0380017992.01 | 0.821453 | 4.005863e-53 | 3.260257e-50 |
| MsG0280010425.01 | MsG0380017992.01 | 0.810439 | 1.151939e-50 | 6.943740e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017992.01.T01 | MTR_3g116440 | 84.985 | 333 | 41 | 3 | 1 | 330 | 33 | 359 | 0.0 | 520 |
| MsG0380017992.01.T01 | MTR_3g034610 | 64.489 | 352 | 102 | 3 | 1 | 329 | 1 | 352 | 3.91e-143 | 410 |
| MsG0380017992.01.T01 | MTR_3g034610 | 69.258 | 283 | 81 | 2 | 53 | 329 | 122 | 404 | 1.55e-129 | 376 |
| MsG0380017992.01.T01 | MTR_3g034640 | 51.813 | 386 | 122 | 5 | 1 | 328 | 33 | 412 | 1.44e-113 | 338 |
| MsG0380017992.01.T01 | MTR_3g034640 | 60.638 | 282 | 105 | 2 | 53 | 328 | 209 | 490 | 8.40e-108 | 323 |
| MsG0380017992.01.T01 | MTR_3g034640 | 62.222 | 270 | 96 | 2 | 65 | 328 | 169 | 438 | 7.57e-107 | 321 |
| MsG0380017992.01.T01 | MTR_3g034640 | 60.227 | 264 | 103 | 1 | 47 | 308 | 229 | 492 | 2.81e-100 | 304 |
| MsG0380017992.01.T01 | MTR_3g034640 | 54.639 | 97 | 40 | 1 | 237 | 329 | 57 | 153 | 1.82e-20 | 92.4 |
| MsG0380017992.01.T01 | MTR_3g116430 | 56.125 | 351 | 127 | 6 | 1 | 328 | 33 | 379 | 1.16e-112 | 333 |
| MsG0380017992.01.T01 | MTR_3g116430 | 58.077 | 260 | 106 | 2 | 47 | 305 | 173 | 430 | 2.35e-89 | 274 |
| MsG0380017992.01.T01 | MTR_3g107810 | 49.102 | 334 | 148 | 4 | 1 | 328 | 33 | 350 | 9.15e-93 | 284 |
| MsG0380017992.01.T01 | MTR_3g107810 | 49.286 | 280 | 140 | 2 | 53 | 330 | 199 | 478 | 7.21e-80 | 251 |
| MsG0380017992.01.T01 | MTR_4g069810 | 35.440 | 364 | 180 | 17 | 1 | 328 | 34 | 378 | 4.93e-43 | 152 |
| MsG0380017992.01.T01 | MTR_4g069810 | 37.799 | 209 | 120 | 7 | 127 | 330 | 77 | 280 | 6.71e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | 3:-102960232 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3:-102960310 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3:-102960388 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | 3:+102960564 | MsG0380017992.01.T01:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3:+102960018 | MsG0380017992.01.T01:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3:+102960174 | MsG0380017992.01.T01:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3:+102960330 | MsG0380017992.01.T01:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.249885 | 3:+102959940 | MsG0380017992.01.T01:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | 3:+102960565 | MsG0380017992.01.T01:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | 3:-102960547 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | 3:-102960640 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | 3:-102959943 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | 3:+102960509 | MsG0380017992.01.T01:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | 3:-102960628 | None:intergenic |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | 3:+102960119 | MsG0380017992.01.T01:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3:+102960197 | MsG0380017992.01.T01:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3:+102960353 | MsG0380017992.01.T01:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3:+102960207 | MsG0380017992.01.T01:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3:+102960363 | MsG0380017992.01.T01:CDS |
| AGACCCAATGTTTCAGCATA+TGG | 0.405735 | 3:+102960408 | MsG0380017992.01.T01:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | 3:-102959806 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | 3:+102960285 | MsG0380017992.01.T01:CDS |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | 3:+102960096 | MsG0380017992.01.T01:CDS |
| TCTCCATATGCTGAAATGTT+TGG | 0.423109 | 3:-102960255 | None:intergenic |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | 3:-102960483 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | 3:-102960171 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | 3:-102960249 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | 3:+102960120 | MsG0380017992.01.T01:CDS |
| AGACCAAACATTTCAGCATA+TGG | 0.445583 | 3:+102960252 | MsG0380017992.01.T01:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | 3:-102960629 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.449066 | 3:-102960412 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | 3:-102960561 | None:intergenic |
| AAACCTTTGAAAGACTGCTT+CGG | 0.462349 | 3:-102959739 | None:intergenic |
| TAAGCTGAAACATTAGGTCT+TGG | 0.463292 | 3:-102959937 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3:-102960015 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3:-102960327 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | 3:+102959886 | MsG0380017992.01.T01:CDS |
| ATTCATGCTAAGAGAAAGAA+AGG | 0.472696 | 3:+102959823 | MsG0380017992.01.T01:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.475638 | 3:-102960405 | None:intergenic |
| TCTCCATATGCTGAAACATT+GGG | 0.476305 | 3:-102960411 | None:intergenic |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | 3:+102959963 | MsG0380017992.01.T01:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3:-102960022 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3:-102960178 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3:-102960334 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | 3:-102960567 | None:intergenic |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | 3:-102960627 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3:-102960021 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3:-102960177 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3:-102960333 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | 3:-102960100 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | 3:-102960633 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | 3:+102959972 | MsG0380017992.01.T01:CDS |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | 3:+102959736 | MsG0380017992.01.T01:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | 3:-102960099 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | 3:+102960566 | MsG0380017992.01.T01:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | 3:+102959679 | MsG0380017992.01.T01:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3:+102960183 | MsG0380017992.01.T01:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3:+102960339 | MsG0380017992.01.T01:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | 3:+102959885 | MsG0380017992.01.T01:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | 3:-102960093 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | 3:+102959680 | MsG0380017992.01.T01:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | 3:+102960596 | MsG0380017992.01.T01:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | 3:-102959781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATTACATTGATGTTA+TGG | + | Chr3:102960509-102960528 | MsG0380017992.01.T01:CDS | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | + | Chr3:102959885-102959904 | MsG0380017992.01.T01:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | Chr3:102960207-102960226 | MsG0380017992.01.T01:CDS | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | + | Chr3:102960285-102960304 | MsG0380017992.01.T01:CDS | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | + | Chr3:102959886-102959905 | MsG0380017992.01.T01:CDS | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | - | Chr3:102959875-102959894 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | - | Chr3:102959874-102959893 | None:intergenic | 20.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | + | Chr3:102959963-102959982 | MsG0380017992.01.T01:CDS | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | + | Chr3:102960050-102960069 | MsG0380017992.01.T01:CDS | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | + | Chr3:102960596-102960615 | MsG0380017992.01.T01:CDS | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | Chr3:102960235-102960254 | None:intergenic | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | - | Chr3:102960492-102960511 | None:intergenic | 25.0% |
| AATTGATGCTAAGGAAAAGA+AGG | + | Chr3:102959972-102959991 | MsG0380017992.01.T01:CDS | 30.0% | |
| ACATGCGAAAAGAAATTCAA+GGG | + | Chr3:102959680-102959699 | MsG0380017992.01.T01:CDS | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | - | Chr3:102959809-102959828 | None:intergenic | 30.0% | |
| ATTCATGCTAAGAGAAAGAA+AGG | + | Chr3:102959823-102959842 | MsG0380017992.01.T01:CDS | 30.0% | |
| ! | GTTTTCATATGCTGAAACAT+TGG | - | Chr3:102960493-102960512 | None:intergenic | 30.0% |
| !! | AGACAATGGTATTGATGTTA+AGG | + | Chr3:102960197-102960216 | MsG0380017992.01.T01:CDS | 30.0% |
| !!! | TATTTTGAAACATTGGGTCT+TGG | - | Chr3:102959868-102959887 | None:intergenic | 30.0% |
| ACCTAACATTTCAGCTTATG+GGG | + | Chr3:102960566-102960585 | MsG0380017992.01.T01:CDS | 35.0% | |
| ACTTGTGTGTCTATTACAAG+TGG | - | Chr3:102959784-102959803 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | + | Chr3:102960119-102960138 | MsG0380017992.01.T01:CDS | 35.0% | |
| AGACCAAACATTTCAGCATA+TGG | + | Chr3:102960252-102960271 | MsG0380017992.01.T01:CDS | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | + | Chr3:102960564-102960583 | MsG0380017992.01.T01:CDS | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | + | Chr3:102959940-102959959 | MsG0380017992.01.T01:CDS | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | - | Chr3:102960550-102960569 | None:intergenic | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | + | Chr3:102960120-102960139 | MsG0380017992.01.T01:CDS | 35.0% | |
| GACATGCGAAAAGAAATTCA+AGG | + | Chr3:102959679-102959698 | MsG0380017992.01.T01:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | + | Chr3:102960565-102960584 | MsG0380017992.01.T01:CDS | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | - | Chr3:102959946-102959965 | None:intergenic | 35.0% | |
| TAAGCTGAAACATTAGGTCT+TGG | - | Chr3:102959940-102959959 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | - | Chr3:102960564-102960583 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | - | Chr3:102960252-102960271 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | Chr3:102960024-102960043 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | Chr3:102960102-102960121 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAATGTT+TGG | - | Chr3:102960258-102960277 | None:intergenic | 35.0% | |
| ! | AAACCTTTGAAAGACTGCTT+CGG | - | Chr3:102959742-102959761 | None:intergenic | 35.0% |
| !! | CTTGAGATTCTTTTTCGTCT+CGG | - | Chr3:102959716-102959735 | None:intergenic | 35.0% |
| ACACCCAATGTTTCAGCATA+TGG | + | Chr3:102960096-102960115 | MsG0380017992.01.T01:CDS | 40.0% | |
| AGACCCAATGTTTCAGCATA+TGG | + | Chr3:102960408-102960427 | MsG0380017992.01.T01:CDS | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | Chr3:102960018-102960037 | MsG0380017992.01.T01:CDS | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | - | Chr3:102960631-102960650 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | - | Chr3:102960632-102960651 | None:intergenic | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | - | Chr3:102960636-102960655 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | Chr3:102960025-102960044 | None:intergenic | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | Chr3:102960103-102960122 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | Chr3:102960027-102960046 | MsG0380017992.01.T01:CDS | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | Chr3:102960018-102960037 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | Chr3:102960408-102960427 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | - | Chr3:102960096-102960115 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | - | Chr3:102960570-102960589 | None:intergenic | 40.0% | |
| ACTCCGAAGCAGTCTTTCAA+AGG | + | Chr3:102959736-102959755 | MsG0380017992.01.T01:CDS | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | - | Chr3:102960630-102960649 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 102959667 | 102960659 | 102959667 | ID=MsG0380017992.01;Name=MsG0380017992.01 |
| Chr3 | mRNA | 102959667 | 102960659 | 102959667 | ID=MsG0380017992.01.T01;Parent=MsG0380017992.01;Name=MsG0380017992.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|330 |
| Chr3 | exon | 102959667 | 102960659 | 102959667 | ID=MsG0380017992.01.T01:exon:3074;Parent=MsG0380017992.01.T01 |
| Chr3 | CDS | 102959667 | 102960659 | 102959667 | ID=MsG0380017992.01.T01:cds;Parent=MsG0380017992.01.T01 |
| Gene Sequence |
| Protein sequence |
