AlfalfaGEDB | Msa0011140

M. sativa cultivar zhongmu-4 / Msa0011140

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011140	sp\|B5X4Z9\|STU_ARATH	40.030	677	309	20	14	684	14	599	2.67e-138	422

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008330	Msa0011140	0.815578	8.602897e-52	-8.615850e-47
Msa0011140	Msa0011720	0.808766	2.635954e-50	-8.615850e-47
Msa0011140	Msa0042220	0.800877	1.172770e-48	-8.615850e-47
Msa0011140	Msa0050730	0.806448	8.185835e-50	-8.615850e-47
Msa0011140	Msa0050760	0.800155	1.645881e-48	-8.615850e-47
Msa0011140	Msa0060170	0.842546	2.420044e-58	-8.615850e-47
Msa0011140	Msa0060600	0.806143	9.491539e-50	-8.615850e-47
Msa0011140	Msa0074230	0.801125	1.043424e-48	-8.615850e-47
Msa0011140	Msa0104980	0.858534	7.714259e-63	-8.615850e-47
Msa0011140	Msa0105340	0.810713	1.005320e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011140	MtrunA17_Chr1g0159711	95.597	704	27	3	1	703	1	701	0.0	1343
Msa0011140	MtrunA17_Chr3g0125281	67.927	767	164	13	3	703	4	754	0.0	994
Msa0011140	MtrunA17_Chr3g0130431	54.812	717	266	14	10	703	9	690	0.0	696
Msa0011140	MtrunA17_Chr4g0036981	41.940	701	336	16	12	703	6	644	5.20e-156	466
Msa0011140	MtrunA17_Chr3g0145591	47.872	470	191	9	245	703	68	494	6.43e-134	404
Msa0011140	MtrunA17_Chr2g0330471	45.578	294	154	4	344	634	393	683	2.76e-85	283
Msa0011140	MtrunA17_Chr8g0341881	42.033	364	191	10	344	699	391	742	5.26e-82	276
Msa0011140	MtrunA17_Chr3g0111431	43.840	349	179	9	346	677	169	517	6.04e-81	266
Msa0011140	MtrunA17_Chr5g0413511	45.517	290	149	5	345	628	46	332	1.36e-80	262
Msa0011140	MtrunA17_Chr4g0072221	43.522	301	158	7	342	637	50	343	2.89e-79	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011140	AT1G77280.2	56.876	749	256	15	10	703	17	753	0.0	798
Msa0011140	AT1G77280.1	56.876	749	256	15	10	703	17	753	0.0	798
Msa0011140	AT1G21590.1	51.905	761	299	16	4	703	2	756	0.0	705
Msa0011140	AT1G21590.2	51.622	709	281	13	54	703	11	716	0.0	660
Msa0011140	AT5G63940.1	50.138	726	282	17	14	703	22	703	0.0	647
Msa0011140	AT2G16750.2	40.030	677	309	20	14	684	14	599	2.71e-139	422
Msa0011140	AT2G16750.1	40.030	677	309	20	14	684	14	599	2.71e-139	422
Msa0011140	AT4G35030.7	46.241	439	199	10	251	684	25	431	2.16e-120	367
Msa0011140	AT4G35030.3	46.241	439	199	10	251	684	25	431	2.16e-120	367
Msa0011140	AT4G35030.6	46.241	439	199	10	251	684	25	431	2.16e-120	367

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Find 227 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCTAAATGATGATG+TGG	0.606939	1_1:+16823087	Msa0011140:CDS
AAAATACCTAATTATGATAA+TGG	0.335735	1_1:-16826122	None:intergenic
AAAATCCGCTTGAGTTTGGT+TGG	0.467735	1_1:+16824099	Msa0011140:CDS
AAAATGATCACCACCTTCAA+CGG	0.557498	1_1:+16822029	Msa0011140:exon
AAAGTTGTGTTCAAGAGAGA+AGG	0.581268	1_1:+16822889	Msa0011140:CDS
AACCACCACAGTACGGCCAC+CGG	0.528483	1_1:-16822057	None:intergenic
AACTTTGGTTCGTCACATTG+TGG	0.585970	1_1:-16825924	None:intergenic
AAGACTACTTGAGAGGCAGG+TGG	0.690424	1_1:+16825755	Msa0011140:CDS
AAGACTCTTGATCTGCAGCT+TGG	0.569357	1_1:-16823141	None:intergenic
AAGATTGATGTCTATGCATT+TGG	0.412713	1_1:+16824580	Msa0011140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTTAATGTGGAGAAATA+TGG	+	chr1_1:16821504-16821523	Msa0011140:five_prime_UTR	30.0%
TGAACTTAATTCAGTTGACA+GGG	-	chr1_1:16821572-16821591	None:intergenic	30.0%
ACAAGATAAACTCGATAGTT+TGG	+	chr1_1:16821591-16821610	Msa0011140:five_prime_UTR	30.0%
TCAACGAGATAATAAATTGG+CGG	-	chr1_1:16821668-16821687	None:intergenic	30.0%
AGGTCAACGAGATAATAAAT+TGG	-	chr1_1:16821671-16821690	None:intergenic	30.0%
CTTCATGTTCTTAGAAATGA+TGG	+	chr1_1:16822170-16822189	Msa0011140:CDS	30.0%
TAGAAATTGTGAATCGAGAT+GGG	+	chr1_1:16822287-16822306	Msa0011140:intron	30.0%
GTTATAGTTGGAAAATCTCA+AGG	+	chr1_1:16822775-16822794	Msa0011140:CDS	30.0%
TACCTAGGTAAAGAAATAGT+TGG	-	chr1_1:16822817-16822836	None:intergenic	30.0%
GAAATTGTACAATGTAGTAG+TGG	-	chr1_1:16823292-16823311	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	16821442	16826306	16821442	ID=Msa0011140;Name=Msa0011140
chr1_1	mRNA	16821442	16826306	16821442	ID=Msa0011140-mRNA-1;Parent=Msa0011140;Name=Msa0011140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=563\|1\|1\|1\|0.9\|0.81\|11\|505\|703
chr1_1	exon	16821442	16821470	16821442	ID=Msa0011140-mRNA-1:exon:6138;Parent=Msa0011140-mRNA-1
chr1_1	exon	16821498	16822191	16821498	ID=Msa0011140-mRNA-1:exon:6139;Parent=Msa0011140-mRNA-1
chr1_1	exon	16822290	16822387	16822290	ID=Msa0011140-mRNA-1:exon:6140;Parent=Msa0011140-mRNA-1
chr1_1	exon	16822691	16822940	16822691	ID=Msa0011140-mRNA-1:exon:6141;Parent=Msa0011140-mRNA-1
chr1_1	exon	16823035	16823607	16823035	ID=Msa0011140-mRNA-1:exon:6142;Parent=Msa0011140-mRNA-1
chr1_1	exon	16823704	16823952	16823704	ID=Msa0011140-mRNA-1:exon:6143;Parent=Msa0011140-mRNA-1
chr1_1	exon	16824090	16824250	16824090	ID=Msa0011140-mRNA-1:exon:6144;Parent=Msa0011140-mRNA-1
chr1_1	exon	16824344	16824423	16824344	ID=Msa0011140-mRNA-1:exon:6145;Parent=Msa0011140-mRNA-1
chr1_1	exon	16824537	16824684	16824537	ID=Msa0011140-mRNA-1:exon:6146;Parent=Msa0011140-mRNA-1
chr1_1	exon	16824862	16825011	16824862	ID=Msa0011140-mRNA-1:exon:6147;Parent=Msa0011140-mRNA-1
chr1_1	exon	16825559	16826306	16825559	ID=Msa0011140-mRNA-1:exon:6148;Parent=Msa0011140-mRNA-1
chr1_1	five_prime_UTR	16821442	16821470	16821442	ID=Msa0011140-mRNA-1:five_prime_utr;Parent=Msa0011140-mRNA-1
chr1_1	five_prime_UTR	16821498	16822031	16821498	ID=Msa0011140-mRNA-1:five_prime_utr;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16822032	16822191	16822032	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16822290	16822387	16822290	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16822691	16822940	16822691	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16823035	16823607	16823035	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16823704	16823952	16823704	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16824090	16824250	16824090	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16824344	16824423	16824344	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16824537	16824684	16824537	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16824862	16825011	16824862	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	CDS	16825559	16825801	16825559	ID=Msa0011140-mRNA-1:cds;Parent=Msa0011140-mRNA-1
chr1_1	three_prime_UTR	16825802	16826306	16825802	ID=Msa0011140-mRNA-1:three_prime_utr;Parent=Msa0011140-mRNA-1

Gene Sequence

>Msa0011140

ATGATCACCACCTTCAACGGTGCCTCCGGTGGCCGTACTGTGGTGGTTGGTGTGAAGATGGAATCTAACAGTCATAGCACTGAGTTGTTGACATGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTTAGAAATGATGAAATTGTGAATCGAGATGGGAAATCTTCTTTGTTTTCTCTTGTCAAAGCATTTGACTCTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTGAAAATTTGCCGGGGTTCATCAGTGAGGAGAATTTTGGTTAGAGAAGCAAATGAATATTGTGCAACTCATGTTATAGTTGGAAAATCTCAAGGTCTTAGTAAAATTAGACCAACTATTTCTTTACCTAGGTATTGTGCTAAGAAGCTATCAAAGGATTGTTGGGTTTTTGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGAAGGATCACCGGCAAATCAAGTTGACTTAAAAGGTCGCCGAATTGGGTTGCTTGGTTCGATTCAACGGACATTCAGCAAGAGTTCAAAAGTGCTAAATGATGATGTGGACGAAGCAATATTGCAGGATTCGTCTTGCTACCAAGCTGCAGATCAAGAGTCTTATGTCGGTGATGACGGTGATAGTGAGAAGAACTCATTGGCTATGGTTCCGGTTAAGGCAACTGATGTTGGTTCTAGCATGAGAACTTTACATGACAGAGAAGTAACTGCTTTAAAACCTGGTTGGCCACTACTACATTGTACAATTTCAGCACCAGACAGGAAAGTTTCTGAAAGATCGTTGTTTCGTCGGATTTCAGTGGTCCAATGGGCAATGCAGTTGCCCTCTAGAAATCTTTCCTTGGATAAAGATCAATTTTTGGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCGGTGAATGCCGAAATAGGAACGATTGCTTCACCTGAACACAAATCTATGAGCGTTCCTAAAGAATTAGAGGGCCTTCATGAGAAATACTCATCAACTTGTAGATTGTTTAACTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGTAAAGGAGGAAGTAGTCAGGTTTATAAAGGCTGCCTTCCTGATGGAAAGGAACTTGCTGTTAAGATCTTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTGCTTTGCATCACAAAAACATCATATCTCTCATTGGATTCTGCTTTGAGGATGACAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGGAGCCTTGAACAAAACCTTCAGGGTAATAAGAAAAATCCGCTTGAGTTTGGTTGGACTGAGAGATACAAGGTGGCAATGGGCGTTGCTGAGGCTTTGGAGTATCTGCATAACAGCAACCAACCTGTGATCCATCGTGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCTCAGCTCTCTGACTTTGGACTTGCGAAATGGGCATCAACGTCGTCATCATCTATAACCTGCACAGATGTTGCCGGAACTTTTGGATACTTGGCACCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGCGTGGTGCTTCTTGAGCTTCTTACAGGAAGAAAGCCTATAAGTGGTGATTATCCTAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTAAATAGAGGGAAGCTGTCACAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAAGAGATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGTGCTCCAGGAGCTAGGCCTCAAATGAGCCTTATTTTAAAAGTCCTTAAAGGTGACGCCGTTGTAATAAAGTGGGCAAAGCTAGAAATTAATGCTTTGAAAGCCTCAGAATTGCTTGATGAAGAAGCTTGTCCACCTTCTGACATACAATCACACCTTAATCTTGCACTGCTTGATGTGGATGATGACACACTCTCCATGTTCAGCGTTGAGCAAAATGTCTCTTTGGAAGACTACTTGAGAGGCAGGTGGAGTCGTTCATCTAGCTTTGATTGA

Protein sequence

>Msa0011140

MITTFNGASGGRTVVVGVKMESNSHSTELLTWSLVNVAQPGDLILALHVLRNDEIVNRDGKSSLFSLVKAFDSVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANEYCATHVIVGKSQGLSKIRPTISLPRYCAKKLSKDCWVFAVDNGKVVFKREGSPANQVDLKGRRIGLLGSIQRTFSKSSKVLNDDVDEAILQDSSCYQAADQESYVGDDGDSEKNSLAMVPVKATDVGSSMRTLHDREVTALKPGWPLLHCTISAPDRKVSERSLFRRISVVQWAMQLPSRNLSLDKDQFLGLDSKSGALVPVNAEIGTIASPEHKSMSVPKELEGLHEKYSSTCRLFNYQELVSATSNFLPENLIGKGGSSQVYKGCLPDGKELAVKILKPSDDVLKEFVLEIEIITALHHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLQGNKKNPLEFGWTERYKVAMGVAEALEYLHNSNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSSITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISGDYPKGQESLVMWASPILNRGKLSQLLDPSLGDNYDHEEMERMVLAATLCIRRAPGARPQMSLILKVLKGDAVVIKWAKLEINALKASELLDEEACPPSDIQSHLNLALLDVDDDTLSMFSVEQNVSLEDYLRGRWSRSSSFD*