Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022010 | sp|Q9FL54|DNAJ6_ARATH | 63.356 | 292 | 95 | 4 | 1 | 288 | 1 | 284 | 4.33e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0022010 | 0.809905 | 1.501671e-50 | -8.615850e-47 |
| Msa0022010 | Msa0032920 | -0.819814 | 9.532218e-53 | -8.615850e-47 |
| Msa0022010 | Msa0093850 | 0.800638 | 1.311812e-48 | -8.615850e-47 |
| Msa0022010 | Msa0106620 | 0.803370 | 3.600464e-49 | -8.615850e-47 |
| Msa0022010 | Msa0211150 | 0.821287 | 4.375638e-53 | -8.615850e-47 |
| Msa0022010 | Msa0221000 | 0.802260 | 6.103883e-49 | -8.615850e-47 |
| Msa0022010 | Msa0271530 | 0.810539 | 1.095948e-50 | -8.615850e-47 |
| Msa0022010 | Msa0277450 | 0.813978 | 1.946189e-51 | -8.615850e-47 |
| Msa0022010 | Msa0300690 | 0.808655 | 2.783967e-50 | -8.615850e-47 |
| Msa0022010 | Msa0337700 | 0.803988 | 2.680440e-49 | -8.615850e-47 |
| Msa0022010 | Msa0341690 | 0.812873 | 3.405028e-51 | -8.615850e-47 |
| Msa0022010 | Msa0342010 | 0.804458 | 2.139042e-49 | -8.615850e-47 |
| Msa0022010 | Msa0357900 | 0.814324 | 1.632615e-51 | -8.615850e-47 |
| Msa0022010 | Msa0358890 | 0.845219 | 4.655342e-59 | -8.615850e-47 |
| Msa0022010 | Msa0378970 | 0.804979 | 1.665281e-49 | -8.615850e-47 |
| Msa0022010 | Msa0479170 | 0.807273 | 5.479120e-50 | -8.615850e-47 |
| Msa0022010 | Msa0532980 | 0.801138 | 1.036933e-48 | -8.615850e-47 |
| Msa0022010 | Msa0574390 | 0.815024 | 1.142363e-51 | -8.615850e-47 |
| Msa0022010 | Msa0652450 | 0.809245 | 2.081245e-50 | -8.615850e-47 |
| Msa0022010 | Msa0767300 | 0.801674 | 8.053310e-49 | -8.615850e-47 |
| Msa0022010 | Msa0866520 | 0.805421 | 1.346202e-49 | -8.615850e-47 |
| Msa0022010 | Msa0964310 | 0.811368 | 7.248952e-51 | -8.615850e-47 |
| Msa0022010 | Msa0980880 | 0.800104 | 1.685502e-48 | -8.615850e-47 |
| Msa0022010 | Msa1006840 | 0.806472 | 8.092055e-50 | -8.615850e-47 |
| Msa0022010 | Msa1013400 | 0.806787 | 6.943545e-50 | -8.615850e-47 |
| Msa0022010 | Msa1031930 | 0.815013 | 1.148951e-51 | -8.615850e-47 |
| Msa0022010 | Msa1135890 | 0.813147 | 2.965251e-51 | -8.615850e-47 |
| Msa0022010 | Msa1139890 | 0.817763 | 2.785520e-52 | -8.615850e-47 |
| Msa0022010 | Msa1218450 | 0.805361 | 1.385362e-49 | -8.615850e-47 |
| Msa0022010 | Msa1218600 | 0.805681 | 1.186778e-49 | -8.615850e-47 |
| Msa0022010 | Msa1219000 | 0.810190 | 1.303513e-50 | -8.615850e-47 |
| Msa0022010 | Msa1298370 | 0.808915 | 2.449312e-50 | -8.615850e-47 |
| Msa0022010 | Msa1332760 | 0.810126 | 1.345585e-50 | -8.615850e-47 |
| Msa0022010 | Msa1353470 | 0.803426 | 3.506739e-49 | -8.615850e-47 |
| Msa0022010 | Msa1353980 | 0.808134 | 3.594950e-50 | -8.615850e-47 |
| Msa0022010 | Msa1360980 | 0.830430 | 2.950326e-55 | -8.615850e-47 |
| Msa0022010 | Msa1382560 | 0.814957 | 1.182515e-51 | -8.615850e-47 |
| Msa0022010 | Msa1386710 | 0.816709 | 4.807768e-52 | -8.615850e-47 |
| Msa0022010 | Msa1423350 | 0.825521 | 4.480074e-54 | -8.615850e-47 |
| Msa0022010 | Msa1440310 | 0.806510 | 7.944902e-50 | -8.615850e-47 |
| Msa0022010 | Msa1449340 | -0.807652 | 4.552879e-50 | -8.615850e-47 |
| Msa0022010 | Msa1451160 | 0.800738 | 1.251721e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022010 | MtrunA17_Chr1g0173931 | 94.521 | 292 | 9 | 3 | 1 | 288 | 1 | 289 | 0.0 | 551 |
| Msa0022010 | MtrunA17_Chr7g0258061 | 76.384 | 271 | 50 | 2 | 7 | 277 | 5 | 261 | 1.07e-149 | 420 |
| Msa0022010 | MtrunA17_Chr7g0269841 | 42.574 | 101 | 54 | 2 | 29 | 125 | 18 | 118 | 4.44e-16 | 77.4 |
| Msa0022010 | MtrunA17_Chr7g0271891 | 50.769 | 65 | 28 | 2 | 39 | 99 | 18 | 82 | 1.08e-13 | 67.8 |
| Msa0022010 | MtrunA17_Chr3g0087741 | 52.308 | 65 | 31 | 0 | 38 | 102 | 90 | 154 | 1.83e-13 | 70.1 |
| Msa0022010 | MtrunA17_Chr2g0282741 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 2.26e-13 | 69.3 |
| Msa0022010 | MtrunA17_Chr2g0282761 | 42.697 | 89 | 44 | 3 | 39 | 123 | 6 | 91 | 2.90e-13 | 68.9 |
| Msa0022010 | MtrunA17_Chr4g0040501 | 49.231 | 65 | 32 | 1 | 39 | 102 | 6 | 70 | 3.42e-13 | 68.9 |
| Msa0022010 | MtrunA17_Chr3g0138471 | 46.154 | 65 | 34 | 1 | 39 | 102 | 6 | 70 | 3.69e-13 | 68.6 |
| Msa0022010 | MtrunA17_Chr7g0242951 | 53.125 | 64 | 29 | 1 | 39 | 102 | 29 | 91 | 6.57e-13 | 68.6 |
| Msa0022010 | MtrunA17_Chr4g0010781 | 53.030 | 66 | 31 | 0 | 37 | 102 | 86 | 151 | 1.05e-12 | 67.8 |
| Msa0022010 | MtrunA17_Chr3g0123861 | 53.030 | 66 | 26 | 2 | 39 | 102 | 84 | 146 | 1.48e-12 | 67.4 |
| Msa0022010 | MtrunA17_Chr1g0209551 | 40.625 | 96 | 51 | 2 | 39 | 128 | 18 | 113 | 1.91e-12 | 67.0 |
| Msa0022010 | MtrunA17_Chr1g0206121 | 40.217 | 92 | 49 | 3 | 34 | 125 | 32 | 117 | 2.13e-12 | 66.2 |
| Msa0022010 | MtrunA17_Chr8g0344721 | 42.697 | 89 | 40 | 3 | 26 | 108 | 3 | 86 | 2.69e-12 | 65.1 |
| Msa0022010 | MtrunA17_Chr2g0324921 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 3.52e-12 | 65.9 |
| Msa0022010 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 35 | 1 | 39 | 102 | 6 | 70 | 1.01e-11 | 64.7 |
| Msa0022010 | MtrunA17_Chr5g0414471 | 48.438 | 64 | 33 | 0 | 39 | 102 | 27 | 90 | 1.17e-11 | 64.7 |
| Msa0022010 | MtrunA17_Chr4g0021141 | 39.759 | 83 | 43 | 1 | 20 | 102 | 12 | 87 | 1.22e-11 | 61.2 |
| Msa0022010 | MtrunA17_Chr2g0333221 | 50.000 | 66 | 28 | 2 | 39 | 102 | 72 | 134 | 2.80e-11 | 63.5 |
| Msa0022010 | MtrunA17_Chr8g0352451 | 38.462 | 91 | 53 | 1 | 35 | 125 | 70 | 157 | 4.40e-11 | 62.8 |
| Msa0022010 | MtrunA17_Chr6g0478651 | 50.000 | 66 | 28 | 2 | 39 | 102 | 70 | 132 | 4.85e-11 | 63.2 |
| Msa0022010 | MtrunA17_Chr2g0295821 | 44.444 | 72 | 35 | 2 | 39 | 108 | 106 | 174 | 5.09e-11 | 62.4 |
| Msa0022010 | MtrunA17_Chr6g0460461 | 48.485 | 66 | 29 | 1 | 39 | 99 | 4 | 69 | 8.79e-11 | 60.5 |
| Msa0022010 | MtrunA17_Chr6g0460411 | 48.485 | 66 | 29 | 1 | 39 | 99 | 4 | 69 | 9.86e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022010 | AT3G12170.1 | 71.311 | 244 | 70 | 0 | 34 | 277 | 8 | 251 | 6.37e-131 | 372 |
| Msa0022010 | AT3G12170.2 | 71.311 | 244 | 70 | 0 | 34 | 277 | 44 | 287 | 7.00e-130 | 371 |
| Msa0022010 | AT5G06910.1 | 63.356 | 292 | 95 | 4 | 1 | 288 | 1 | 284 | 4.41e-118 | 340 |
| Msa0022010 | AT3G62600.1 | 53.030 | 66 | 31 | 0 | 37 | 102 | 26 | 91 | 1.37e-14 | 73.6 |
| Msa0022010 | AT1G56300.2 | 46.667 | 75 | 35 | 3 | 35 | 105 | 11 | 84 | 2.86e-14 | 68.6 |
| Msa0022010 | AT1G56300.1 | 47.826 | 69 | 32 | 2 | 35 | 99 | 11 | 79 | 3.11e-14 | 69.3 |
| Msa0022010 | AT5G48030.1 | 56.250 | 64 | 28 | 0 | 39 | 102 | 96 | 159 | 6.31e-14 | 72.0 |
| Msa0022010 | AT5G01390.3 | 48.485 | 66 | 33 | 1 | 38 | 102 | 5 | 70 | 7.02e-14 | 70.1 |
| Msa0022010 | AT5G01390.4 | 48.485 | 66 | 33 | 1 | 38 | 102 | 5 | 70 | 7.29e-14 | 70.1 |
| Msa0022010 | AT1G59980.2 | 50.000 | 64 | 32 | 0 | 39 | 102 | 25 | 88 | 1.24e-13 | 70.9 |
| Msa0022010 | AT5G01390.2 | 48.485 | 66 | 33 | 1 | 38 | 102 | 5 | 70 | 1.59e-13 | 69.7 |
| Msa0022010 | AT5G03160.1 | 54.839 | 62 | 27 | 1 | 39 | 99 | 372 | 433 | 1.81e-13 | 70.9 |
| Msa0022010 | AT1G59980.1 | 50.000 | 64 | 32 | 0 | 39 | 102 | 25 | 88 | 1.90e-13 | 70.5 |
| Msa0022010 | AT5G01390.1 | 48.485 | 66 | 33 | 1 | 38 | 102 | 5 | 70 | 2.17e-13 | 69.7 |
| Msa0022010 | AT2G21510.2 | 37.931 | 116 | 59 | 3 | 39 | 141 | 8 | 123 | 4.39e-13 | 68.9 |
| Msa0022010 | AT2G21510.4 | 37.931 | 116 | 59 | 3 | 39 | 141 | 8 | 123 | 4.39e-13 | 68.9 |
| Msa0022010 | AT4G39150.3 | 51.562 | 64 | 31 | 0 | 39 | 102 | 8 | 71 | 5.04e-13 | 68.9 |
| Msa0022010 | AT4G39150.1 | 51.562 | 64 | 31 | 0 | 39 | 102 | 8 | 71 | 5.04e-13 | 68.9 |
| Msa0022010 | AT4G39150.2 | 51.562 | 64 | 31 | 0 | 39 | 102 | 8 | 71 | 5.04e-13 | 68.9 |
| Msa0022010 | AT2G21510.3 | 37.931 | 116 | 59 | 3 | 39 | 141 | 8 | 123 | 5.11e-13 | 68.9 |
| Msa0022010 | AT2G21510.1 | 37.931 | 116 | 59 | 3 | 39 | 141 | 8 | 123 | 5.11e-13 | 68.9 |
| Msa0022010 | AT2G21510.5 | 37.931 | 116 | 59 | 3 | 39 | 141 | 8 | 123 | 6.83e-13 | 68.2 |
| Msa0022010 | AT4G39960.1 | 46.988 | 83 | 40 | 2 | 38 | 120 | 86 | 164 | 6.85e-13 | 68.9 |
| Msa0022010 | AT4G39960.2 | 46.988 | 83 | 40 | 2 | 38 | 120 | 86 | 164 | 6.85e-13 | 68.9 |
| Msa0022010 | AT1G68370.1 | 39.815 | 108 | 59 | 2 | 27 | 128 | 7 | 114 | 8.91e-13 | 68.6 |
| Msa0022010 | AT4G28480.2 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 9.05e-13 | 67.8 |
| Msa0022010 | AT3G08910.1 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 9.36e-13 | 67.8 |
| Msa0022010 | AT4G28480.1 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 1.23e-12 | 67.8 |
| Msa0022010 | AT3G14200.1 | 51.515 | 66 | 29 | 1 | 37 | 99 | 12 | 77 | 1.27e-12 | 66.2 |
| Msa0022010 | AT2G22360.1 | 44.565 | 92 | 43 | 3 | 39 | 125 | 88 | 176 | 1.46e-12 | 67.8 |
| Msa0022010 | AT5G25530.2 | 47.692 | 65 | 33 | 1 | 39 | 102 | 6 | 70 | 1.54e-12 | 67.4 |
| Msa0022010 | AT1G21080.3 | 47.059 | 68 | 36 | 0 | 35 | 102 | 4 | 71 | 5.50e-12 | 65.9 |
| Msa0022010 | AT1G21080.1 | 47.059 | 68 | 36 | 0 | 35 | 102 | 4 | 71 | 5.72e-12 | 65.9 |
| Msa0022010 | AT5G49060.2 | 44.000 | 75 | 37 | 2 | 36 | 108 | 98 | 169 | 6.42e-12 | 65.5 |
| Msa0022010 | AT5G49060.1 | 44.000 | 75 | 37 | 2 | 36 | 108 | 98 | 169 | 6.42e-12 | 65.5 |
| Msa0022010 | AT1G59725.1 | 45.455 | 66 | 34 | 1 | 39 | 102 | 6 | 71 | 1.02e-11 | 65.1 |
| Msa0022010 | AT1G76700.1 | 50.000 | 64 | 32 | 0 | 39 | 102 | 8 | 71 | 1.05e-11 | 65.1 |
| Msa0022010 | AT2G20560.1 | 44.615 | 65 | 35 | 1 | 39 | 102 | 6 | 70 | 1.06e-11 | 64.7 |
| Msa0022010 | AT3G08970.1 | 53.125 | 64 | 29 | 1 | 39 | 102 | 29 | 91 | 1.21e-11 | 65.5 |
| Msa0022010 | AT3G08970.2 | 53.125 | 64 | 29 | 1 | 39 | 102 | 29 | 91 | 1.21e-11 | 65.5 |
| Msa0022010 | AT1G28210.3 | 42.254 | 71 | 41 | 0 | 29 | 99 | 40 | 110 | 2.02e-11 | 64.3 |
| Msa0022010 | AT1G28210.1 | 42.254 | 71 | 41 | 0 | 29 | 99 | 40 | 110 | 2.12e-11 | 64.3 |
| Msa0022010 | AT1G28210.2 | 42.254 | 71 | 41 | 0 | 29 | 99 | 40 | 110 | 2.31e-11 | 64.3 |
| Msa0022010 | AT3G17830.1 | 48.684 | 76 | 31 | 3 | 39 | 112 | 65 | 134 | 6.67e-11 | 63.2 |
| Msa0022010 | AT5G16650.1 | 43.284 | 67 | 38 | 0 | 39 | 105 | 13 | 79 | 8.40e-11 | 58.9 |
| Msa0022010 | AT1G24120.1 | 48.438 | 64 | 33 | 0 | 39 | 102 | 22 | 85 | 9.23e-11 | 62.4 |
Find 85 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAATTCTCAACTCTTTA+AGG | 0.104776 | 1_1:-40262883 | Msa0022010:three_prime_UTR |
| TGTATAGTCTGTTTCTTTCA+TGG | 0.210797 | 1_1:-40262930 | Msa0022010:three_prime_UTR |
| AGAACATTGGCAACTTAAAT+TGG | 0.217792 | 1_1:+40262787 | None:intergenic |
| ATGTTGTGCGTTTGAGTTTA+TGG | 0.249043 | 1_1:+40262672 | None:intergenic |
| ATTATTTATTATTAGGTTCT+TGG | 0.249667 | 1_1:-40266178 | Msa0022010:intron |
| CAATGTTCTTGGTGAGTTTA+TGG | 0.261683 | 1_1:-40262773 | Msa0022010:three_prime_UTR |
| ATTTAAGTTGCCAATGTTCT+TGG | 0.261737 | 1_1:-40262784 | Msa0022010:three_prime_UTR |
| AGGAGTTTGAAGCAAATTAT+AGG | 0.268855 | 1_1:-40263810 | Msa0022010:CDS |
| CAAAACAGAAGAAAAGAAAA+TGG | 0.285253 | 1_1:-40266388 | Msa0022010:exon |
| GGAGTTTGAAGCAAATTATA+GGG | 0.301735 | 1_1:-40263809 | Msa0022010:CDS |
| GAATTCCTCTTCAGAGGGTT+CGG | 0.312967 | 1_1:+40263027 | None:intergenic |
| AATCGATGCGAGTCGAGTTT+AGG | 0.313518 | 1_1:+40263616 | None:intergenic |
| AAAAGAAAGCGTACAAGAAA+TGG | 0.336249 | 1_1:-40263310 | Msa0022010:CDS |
| TCTGAAAACCAGGACCTTGC+AGG | 0.336660 | 1_1:-40263992 | Msa0022010:intron |
| TCATCACCAGGGTTCTTATC+AGG | 0.360923 | 1_1:+40266088 | None:intergenic |
| TTACCTGGTAGAGTGAGTTT+TGG | 0.362358 | 1_1:+40266268 | None:intergenic |
| TCGTCTCTAATCTCAAAATA+TGG | 0.366431 | 1_1:-40263064 | Msa0022010:CDS |
| TTTAATTAATAACCAGGATT+GGG | 0.376427 | 1_1:+40266504 | None:intergenic |
| ACTCGACTCGCATCGATTCA+AGG | 0.376743 | 1_1:-40263611 | Msa0022010:CDS |
| AAAGAAGGCGTATCACAAAT+TGG | 0.377076 | 1_1:-40266125 | Msa0022010:CDS |
| ATTTAATTAATAACCAGGAT+TGG | 0.378007 | 1_1:+40266503 | None:intergenic |
| AGAGTAAGAAGAAGAGAAGT+AGG | 0.379816 | 1_1:-40266362 | Msa0022010:CDS |
| CGGGCACTTTATGATGAAAC+TGG | 0.385964 | 1_1:-40264909 | Msa0022010:CDS |
| ATTGATGAGGCTATAGCTTC+TGG | 0.387082 | 1_1:-40263583 | Msa0022010:intron |
| ACTCTTTAAGGCTGAACATC+GGG | 0.387896 | 1_1:-40262871 | Msa0022010:three_prime_UTR |
| AATTCCTCTTCAGAGGGTTC+GGG | 0.389041 | 1_1:+40263028 | None:intergenic |
| CAAAATGTTATCTCCATTCT+CGG | 0.394188 | 1_1:-40264945 | Msa0022010:CDS |
| GTCACTTCACTATTGTTAGT+TGG | 0.400433 | 1_1:-40262902 | Msa0022010:three_prime_UTR |
| AATCTTCTACAGATCAAGTA+AGG | 0.435909 | 1_1:-40263161 | Msa0022010:intron |
| CTTCAGAGGGTTCGGGCACA+TGG | 0.444877 | 1_1:+40263035 | None:intergenic |
| GGTTCCTTGGAGGCTATAAA+TGG | 0.449963 | 1_1:+40262587 | None:intergenic |
| TGTTACTCTTTCTGCCATCA+TGG | 0.453646 | 1_1:-40262726 | Msa0022010:three_prime_UTR |
| AAAATGTTATCTCCATTCTC+GGG | 0.461779 | 1_1:-40264944 | Msa0022010:CDS |
| TAAAGGACTAGTTGGCGGCT+TGG | 0.473285 | 1_1:+40263268 | None:intergenic |
| TGAGTTGGAGCGCCCAATCC+TGG | 0.484676 | 1_1:-40266516 | Msa0022010:five_prime_UTR |
| GGAACCTTCGTTGTTGTTGT+TGG | 0.485181 | 1_1:+40266305 | None:intergenic |
| TGATTTAATTAGACTTTACA+AGG | 0.489056 | 1_1:-40263767 | Msa0022010:CDS |
| TGATGGCAGAAGCGAAAGGC+GGG | 0.489762 | 1_1:-40266546 | Msa0022010:five_prime_UTR |
| CTTCGTAAAGGACTAGTTGG+CGG | 0.491008 | 1_1:+40263263 | None:intergenic |
| TATATCTGCAGGAGAACTAA+AGG | 0.492660 | 1_1:-40263333 | Msa0022010:intron |
| AAAGAAAGCGTACAAGAAAT+GGG | 0.493039 | 1_1:-40263309 | Msa0022010:CDS |
| TTCCTTCGTAAAGGACTAGT+TGG | 0.496942 | 1_1:+40263260 | None:intergenic |
| AAAACAGAAGAAAAGAAAAT+GGG | 0.509143 | 1_1:-40266387 | Msa0022010:exon |
| AATTAATTTAATTAATAACC+AGG | 0.513421 | 1_1:+40266498 | None:intergenic |
| GCTTCGAATTCCTCTTCAGA+GGG | 0.517725 | 1_1:+40263022 | None:intergenic |
| CAAGTTGGTTACTTTCGCCT+AGG | 0.529009 | 1_1:+40262959 | None:intergenic |
| TTTCAGAACATTGTACAAGA+AGG | 0.533814 | 1_1:-40263942 | Msa0022010:intron |
| GAGTAAGAAGAAGAGAAGTA+GGG | 0.538087 | 1_1:-40266361 | Msa0022010:CDS |
| TAGACTTTACAAGGAATGCA+AGG | 0.538206 | 1_1:-40263758 | Msa0022010:CDS |
| AGATTTGATTTCTTCATCGT+CGG | 0.538325 | 1_1:+40266332 | None:intergenic |
| GACTATACAGAAAGGCAAGT+TGG | 0.539303 | 1_1:+40262944 | None:intergenic |
| AATGCAAGGGTAATATGAGC+AGG | 0.540983 | 1_1:-40263744 | Msa0022010:intron |
| ACGAGAACATAGAATCAAAC+CGG | 0.544920 | 1_1:+40263083 | None:intergenic |
| GAGAGGCTAACCTCATCACC+AGG | 0.545071 | 1_1:+40266076 | None:intergenic |
| AACTCTTTAAGGCTGAACAT+CGG | 0.554528 | 1_1:-40262872 | Msa0022010:three_prime_UTR |
| CATAAACTCACCAAGAACAT+TGG | 0.555776 | 1_1:+40262774 | None:intergenic |
| AAACCAAAACTCACTCTACC+AGG | 0.561284 | 1_1:-40266271 | Msa0022010:intron |
| AAATTAATGCACCTCCATGA+TGG | 0.562026 | 1_1:+40262712 | None:intergenic |
| AGCTTCGAATTCCTCTTCAG+AGG | 0.566300 | 1_1:+40263021 | None:intergenic |
| GGTCACTGAAGCTGATATTG+AGG | 0.567799 | 1_1:-40263830 | Msa0022010:CDS |
| ATTCAAGGATATTATTGATG+AGG | 0.571989 | 1_1:-40263596 | Msa0022010:CDS |
| AACTAAACAAGAAATAAAGA+AGG | 0.573873 | 1_1:-40266140 | Msa0022010:CDS |
| TCTCTAATCTCAAAATATGG+TGG | 0.580345 | 1_1:-40263061 | Msa0022010:CDS |
| TTTGATTTCTTCATCGTCGG+AGG | 0.586096 | 1_1:+40266335 | None:intergenic |
| GACGAGATGAGAGGAAAGAC+CGG | 0.588828 | 1_1:-40263102 | Msa0022010:CDS |
| TTATTATTAGGTTCTTGGTG+TGG | 0.593713 | 1_1:-40266173 | Msa0022010:intron |
| TGTGCCCGAACCCTCTGAAG+AGG | 0.595257 | 1_1:-40263032 | Msa0022010:CDS |
| AAGGCGGGAAGAAATTGAGT+TGG | 0.598732 | 1_1:-40266531 | Msa0022010:five_prime_UTR |
| AGACTTTACAAGGAATGCAA+GGG | 0.606865 | 1_1:-40263757 | Msa0022010:CDS |
| AAGAAACAGACTATACAGAA+AGG | 0.607792 | 1_1:+40262936 | None:intergenic |
| TATCAAAACGACGAGATGAG+AGG | 0.612573 | 1_1:-40263111 | Msa0022010:CDS |
| TGATAAGAACCCTGGTGATG+AGG | 0.614956 | 1_1:-40266086 | Msa0022010:intron |
| GAGTTTGAAGCAAATTATAG+GGG | 0.620493 | 1_1:-40263808 | Msa0022010:CDS |
| TGACGGCGGGAAAAGAGTGA+TGG | 0.628248 | 1_1:-40266563 | None:intergenic |
| TACTCTTTCTGCCATCATGG+AGG | 0.630086 | 1_1:-40262723 | Msa0022010:three_prime_UTR |
| AAATGTTATCTCCATTCTCG+GGG | 0.645657 | 1_1:-40264943 | Msa0022010:CDS |
| CTTCATCCTGATAAGAACCC+TGG | 0.652291 | 1_1:-40266094 | Msa0022010:CDS |
| GTGATGGCAGAAGCGAAAGG+CGG | 0.654334 | 1_1:-40266547 | Msa0022010:five_prime_UTR |
| CTCTTTAAGGCTGAACATCG+GGG | 0.662929 | 1_1:-40262870 | Msa0022010:three_prime_UTR |
| CGCCAACTAGTCCTTTACGA+AGG | 0.677178 | 1_1:-40263262 | Msa0022010:CDS |
| GATACCAACAACAACAACGA+AGG | 0.683092 | 1_1:-40266309 | Msa0022010:CDS |
| TCTGAACTACATCTCCTGCA+AGG | 0.685642 | 1_1:+40263978 | None:intergenic |
| AGAGTGATGGCAGAAGCGAA+AGG | 0.697275 | 1_1:-40266550 | Msa0022010:five_prime_UTR |
| AGAGGCTAACCTCATCACCA+GGG | 0.733377 | 1_1:+40266077 | None:intergenic |
| AAATTGGTAAAAGATAACAC+AGG | 0.769111 | 1_1:+40262803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTTAATTAATAACC+AGG | + | chr1_1:40262656-40262675 | None:intergenic | 10.0% |
| !! | TATGTGAATTATTTATTATT+AGG | - | chr1_1:40262966-40262985 | Msa0022010:exon | 10.0% |
| !!! | CTATTTTATCAAATTATTAT+TGG | - | chr1_1:40263237-40263256 | Msa0022010:intron | 10.0% |
| !!! | AATTTTTTTTTTTGAAAACT+CGG | - | chr1_1:40263379-40263398 | Msa0022010:intron | 10.0% |
| !! | ATTATTTATTATTAGGTTCT+TGG | - | chr1_1:40262973-40262992 | Msa0022010:CDS | 15.0% |
| !!! | TTTCGTTTATTTTTTGTTAA+GGG | - | chr1_1:40264026-40264045 | Msa0022010:intron | 15.0% |
| !!! | ATACAATATGCTTTTTTTTA+GGG | + | chr1_1:40264341-40264360 | None:intergenic | 15.0% |
| !!! | TATACAATATGCTTTTTTTT+AGG | + | chr1_1:40264342-40264361 | None:intergenic | 15.0% |
| !! | TTTAATTAATAACCAGGATT+GGG | + | chr1_1:40262650-40262669 | None:intergenic | 20.0% |
| !! | ATTTAATTAATAACCAGGAT+TGG | + | chr1_1:40262651-40262670 | None:intergenic | 20.0% |
| !! | AAAACAGAAGAAAAGAAAAT+GGG | - | chr1_1:40262764-40262783 | Msa0022010:three_prime_UTR | 20.0% |
| !! | AACTAAACAAGAAATAAAGA+AGG | - | chr1_1:40263011-40263030 | Msa0022010:CDS | 20.0% |
| !! | AATTACTATTGTTAGCAATT+GGG | + | chr1_1:40263148-40263167 | None:intergenic | 20.0% |
| !! | TAATTACTATTGTTAGCAAT+TGG | + | chr1_1:40263149-40263168 | None:intergenic | 20.0% |
| !! | AAACAAAAAATAACCCATTT+GGG | + | chr1_1:40263588-40263607 | None:intergenic | 20.0% |
| !! | AAAACAAAAAATAACCCATT+TGG | + | chr1_1:40263589-40263608 | None:intergenic | 20.0% |
| !!! | GTGTTTCATTTTAATATTGT+GGG | + | chr1_1:40263643-40263662 | None:intergenic | 20.0% |
| !!! | AGTGTTTCATTTTAATATTG+TGG | + | chr1_1:40263644-40263663 | None:intergenic | 20.0% |
| !! | CAATTAACATCAAAATACTA+CGG | + | chr1_1:40263885-40263904 | None:intergenic | 20.0% |
| !!! | GTTTCGTTTATTTTTTGTTA+AGG | - | chr1_1:40264025-40264044 | Msa0022010:intron | 20.0% |
| !!! | TTTTTTTTATATCAAAGGCA+AGG | - | chr1_1:40264752-40264771 | Msa0022010:intron | 20.0% |
| !! | ACATTTCAAATTAGAAAGTA+AGG | + | chr1_1:40264991-40265010 | None:intergenic | 20.0% |
| !! | TGATTTAATTAGACTTTACA+AGG | - | chr1_1:40265384-40265403 | Msa0022010:intron | 20.0% |
| !! | TATTCTGCATATTAATAGAT+AGG | - | chr1_1:40265749-40265768 | Msa0022010:intron | 20.0% |
| ! | CAAAACAGAAGAAAAGAAAA+TGG | - | chr1_1:40262763-40262782 | Msa0022010:three_prime_UTR | 25.0% |
| ! | AAAATGTCATATTCTTGTAC+TGG | + | chr1_1:40263354-40263373 | None:intergenic | 25.0% |
| ! | AACAAAAAATAACCCATTTG+GGG | + | chr1_1:40263587-40263606 | None:intergenic | 25.0% |
| ! | TATGAGTAAGTACACATTAT+GGG | - | chr1_1:40263687-40263706 | Msa0022010:intron | 25.0% |
| ! | ATGTTAATTGTAACACCTTA+TGG | - | chr1_1:40263895-40263914 | Msa0022010:intron | 25.0% |
| ! | TATCAGTGAAAATAACCATA+AGG | + | chr1_1:40263913-40263932 | None:intergenic | 25.0% |
| ! | ATGATCAAATATTGAAGCTT+GGG | - | chr1_1:40264471-40264490 | Msa0022010:intron | 25.0% |
| !! | TTTTTAACAGATCATGTATC+TGG | - | chr1_1:40264658-40264677 | Msa0022010:intron | 25.0% |
| ! | CTAAGAATAGAAGAAAATGT+TGG | - | chr1_1:40264897-40264916 | Msa0022010:CDS | 25.0% |
| !!! | ATTTTGTTCAATGCTTTGTT+CGG | - | chr1_1:40265510-40265529 | Msa0022010:intron | 25.0% |
| ! | ATTCAAGGATATTATTGATG+AGG | - | chr1_1:40265555-40265574 | Msa0022010:intron | 25.0% |
| !! | TCTTTTATATTAGTGATAGC+TGG | + | chr1_1:40265650-40265669 | None:intergenic | 25.0% |
| ! | AATATTTCACTTCTGTTTGA+TGG | - | chr1_1:40265774-40265793 | Msa0022010:intron | 25.0% |
| ! | AAATTGGTAAAAGATAACAC+AGG | + | chr1_1:40266351-40266370 | None:intergenic | 25.0% |
| !!! | ACTATGACTCTTTGTTTTAA+TGG | - | chr1_1:40266508-40266527 | Msa0022010:five_prime_UTR | 25.0% |
| !!! | CTATGACTCTTTGTTTTAAT+GGG | - | chr1_1:40266509-40266528 | Msa0022010:five_prime_UTR | 25.0% |
| ! | AGATTTGATTTCTTCATCGT+CGG | + | chr1_1:40262822-40262841 | None:intergenic | 30.0% |
| ! | GAAATGTTAAAGTACTTACC+TGG | + | chr1_1:40262901-40262920 | None:intergenic | 30.0% |
| TTATTATTAGGTTCTTGGTG+TGG | - | chr1_1:40262978-40262997 | Msa0022010:CDS | 30.0% | |
| !! | GTTACTGTAATTTTAGGTCT+CGG | - | chr1_1:40263112-40263131 | Msa0022010:CDS | 30.0% |
| !! | TTACTGTAATTTTAGGTCTC+GGG | - | chr1_1:40263113-40263132 | Msa0022010:CDS | 30.0% |
| AATGTAGCTACATAACAAGT+TGG | + | chr1_1:40263208-40263227 | None:intergenic | 30.0% | |
| ! | TTTAGTGTCTCTGTCAATTT+TGG | - | chr1_1:40263267-40263286 | Msa0022010:CDS | 30.0% |
| !! | AATTTTGGTACCTGTTTGTT+AGG | - | chr1_1:40263282-40263301 | Msa0022010:CDS | 30.0% |
| TAACTGTACCTATGTAACAT+AGG | + | chr1_1:40263308-40263327 | None:intergenic | 30.0% | |
| ATGTTACATAGGTACAGTTA+CGG | - | chr1_1:40263308-40263327 | Msa0022010:CDS | 30.0% | |
| AATATTGTGGGTGAAAATTG+TGG | + | chr1_1:40263631-40263650 | None:intergenic | 30.0% | |
| AATGTGTACTTACTCATACT+GGG | + | chr1_1:40263685-40263704 | None:intergenic | 30.0% | |
| TAATGTGTACTTACTCATAC+TGG | + | chr1_1:40263686-40263705 | None:intergenic | 30.0% | |
| GTATGAGTAAGTACACATTA+TGG | - | chr1_1:40263686-40263705 | Msa0022010:intron | 30.0% | |
| ! | ATTTTGCAATTGCTGAAACT+TGG | + | chr1_1:40264192-40264211 | None:intergenic | 30.0% |
| CAAAATGTTATCTCCATTCT+CGG | - | chr1_1:40264206-40264225 | Msa0022010:intron | 30.0% | |
| AAAATGTTATCTCCATTCTC+GGG | - | chr1_1:40264207-40264226 | Msa0022010:intron | 30.0% | |
| ! | TACAAGGGTTTGGTTATATT+TGG | + | chr1_1:40264308-40264327 | None:intergenic | 30.0% |
| AAAGTCATTATACAAGGGTT+TGG | + | chr1_1:40264318-40264337 | None:intergenic | 30.0% | |
| TAGGGAAAGTCATTATACAA+GGG | + | chr1_1:40264323-40264342 | None:intergenic | 30.0% | |
| TTAGGGAAAGTCATTATACA+AGG | + | chr1_1:40264324-40264343 | None:intergenic | 30.0% | |
| GATGATCAAATATTGAAGCT+TGG | - | chr1_1:40264470-40264489 | Msa0022010:intron | 30.0% | |
| GTGTTAACATATTAAGTTCC+TGG | + | chr1_1:40264617-40264636 | None:intergenic | 30.0% | |
| ! | TTTTATATCAAAGGCAAGGT+AGG | - | chr1_1:40264756-40264775 | Msa0022010:intron | 30.0% |
| TTTATATCAAAGGCAAGGTA+GGG | - | chr1_1:40264757-40264776 | Msa0022010:intron | 30.0% | |
| TAGACAGTAGTGTATGTTAT+TGG | - | chr1_1:40264796-40264815 | Msa0022010:intron | 30.0% | |
| GTTTATAGAAATACGAAGCA+AGG | + | chr1_1:40264969-40264988 | None:intergenic | 30.0% | |
| ! | ATGTTTAGATCTTTTTGCTC+TGG | - | chr1_1:40265007-40265026 | Msa0022010:intron | 30.0% |
| ! | GAACGAAATATTGTCATTTC+AGG | - | chr1_1:40265081-40265100 | Msa0022010:intron | 30.0% |
| !! | CGTATTTATTTCTGAAAACC+AGG | - | chr1_1:40265149-40265168 | Msa0022010:intron | 30.0% |
| TTTCAGAACATTGTACAAGA+AGG | - | chr1_1:40265209-40265228 | Msa0022010:intron | 30.0% | |
| ACTTTGCAATTTGTGCTAAT+AGG | - | chr1_1:40265300-40265319 | Msa0022010:intron | 30.0% | |
| ! | AGGAGTTTGAAGCAAATTAT+AGG | - | chr1_1:40265341-40265360 | Msa0022010:intron | 30.0% |
| ! | GGAGTTTGAAGCAAATTATA+GGG | - | chr1_1:40265342-40265361 | Msa0022010:intron | 30.0% |
| ! | GAGTTTGAAGCAAATTATAG+GGG | - | chr1_1:40265343-40265362 | Msa0022010:intron | 30.0% |
| !!! | TAAAACCCGGCTTTTTTTTA+GGG | - | chr1_1:40265450-40265469 | Msa0022010:intron | 30.0% |
| CGGAATATCAAATTCAAAAC+TGG | + | chr1_1:40265479-40265498 | None:intergenic | 30.0% | |
| !! | AGAATATTTCTAGCTTTCGT+TGG | - | chr1_1:40265593-40265612 | Msa0022010:intron | 30.0% |
| TCACCAAGTTCAAAAGAAAA+TGG | - | chr1_1:40265698-40265717 | Msa0022010:intron | 30.0% | |
| ! | CTTCCATTTTCTTTTGAACT+TGG | + | chr1_1:40265704-40265723 | None:intergenic | 30.0% |
| ! | AAAAGAAAGCGTACAAGAAA+TGG | - | chr1_1:40265841-40265860 | Msa0022010:intron | 30.0% |
| ! | AAAGAAAGCGTACAAGAAAT+GGG | - | chr1_1:40265842-40265861 | Msa0022010:intron | 30.0% |
| TAAGTTTATCAAGCAGAGTT+TGG | - | chr1_1:40265921-40265940 | Msa0022010:intron | 30.0% | |
| TGTTATTGGCACTTTAATGT+AGG | - | chr1_1:40265947-40265966 | Msa0022010:intron | 30.0% | |
| AATCTTCTACAGATCAAGTA+AGG | - | chr1_1:40265990-40266009 | Msa0022010:intron | 30.0% | |
| ! | ATAGCATACAGATCTGTTTT+TGG | + | chr1_1:40266018-40266037 | None:intergenic | 30.0% |
| TCGTCTCTAATCTCAAAATA+TGG | - | chr1_1:40266087-40266106 | Msa0022010:CDS | 30.0% | |
| TCTCTAATCTCAAAATATGG+TGG | - | chr1_1:40266090-40266109 | Msa0022010:CDS | 30.0% | |
| AAGAAACAGACTATACAGAA+AGG | + | chr1_1:40266218-40266237 | None:intergenic | 30.0% | |
| ! | TGTATAGTCTGTTTCTTTCA+TGG | - | chr1_1:40266221-40266240 | Msa0022010:intron | 30.0% |
| TTGGAATTCTCAACTCTTTA+AGG | - | chr1_1:40266268-40266287 | Msa0022010:intron | 30.0% | |
| ! | CTATTTTCGTTTACAAGATG+AGG | - | chr1_1:40266304-40266323 | Msa0022010:CDS | 30.0% |
| ! | AACACAGGCTTCAAATTTTT+AGG | + | chr1_1:40266336-40266355 | None:intergenic | 30.0% |
| AGAACATTGGCAACTTAAAT+TGG | + | chr1_1:40266367-40266386 | None:intergenic | 30.0% | |
| !! | ATTTAAGTTGCCAATGTTCT+TGG | - | chr1_1:40266367-40266386 | Msa0022010:CDS | 30.0% |
| AGAGTAAGAAGAAGAGAAGT+AGG | - | chr1_1:40262789-40262808 | Msa0022010:three_prime_UTR | 35.0% | |
| GAGTAAGAAGAAGAGAAGTA+GGG | - | chr1_1:40262790-40262809 | Msa0022010:three_prime_UTR | 35.0% | |
| !!! | GTTTTGGTTTTGATCGGAAA+TGG | + | chr1_1:40262870-40262889 | None:intergenic | 35.0% |
| !!! | GAGTGAGTTTTGGTTTTGAT+CGG | + | chr1_1:40262876-40262895 | None:intergenic | 35.0% |
| ! | AAAGAAGGCGTATCACAAAT+TGG | - | chr1_1:40263026-40263045 | Msa0022010:CDS | 35.0% |
| ! | TGCTGCGTTACTGTAATTTT+AGG | - | chr1_1:40263106-40263125 | Msa0022010:CDS | 35.0% |
| !! | CTACATAACAAGTTGGTCTA+GGG | + | chr1_1:40263201-40263220 | None:intergenic | 35.0% |
| TTGTTAGGCCTATGTTACAT+AGG | - | chr1_1:40263297-40263316 | Msa0022010:CDS | 35.0% | |
| ! | AGATTAGTCGATTCTTGGAT+CGG | + | chr1_1:40263408-40263427 | None:intergenic | 35.0% |
| ! | AAAAATAACCCATTTGGGGT+TGG | + | chr1_1:40263583-40263602 | None:intergenic | 35.0% |
| CATCAAAATACTACGGTTAC+AGG | + | chr1_1:40263878-40263897 | None:intergenic | 35.0% | |
| TCGCAAACAAAGAAACACTT+TGG | + | chr1_1:40263999-40264018 | None:intergenic | 35.0% | |
| ! | TTGTTCCTTGTTTCATTTGC+AGG | - | chr1_1:40264157-40264176 | Msa0022010:intron | 35.0% |
| AAATGTTATCTCCATTCTCG+GGG | - | chr1_1:40264208-40264227 | Msa0022010:intron | 35.0% | |
| ! | AAGGGTTTGGTTATATTTGG+AGG | + | chr1_1:40264305-40264324 | None:intergenic | 35.0% |
| !! | TGTGTCATAGTGTTGATACA+AGG | - | chr1_1:40264448-40264467 | Msa0022010:intron | 35.0% |
| !! | ACTAAGTTCTAAAGCTGTGT+TGG | - | chr1_1:40264531-40264550 | Msa0022010:intron | 35.0% |
| !! | CTAAAGCTGTGTTGGTATTT+TGG | - | chr1_1:40264539-40264558 | Msa0022010:intron | 35.0% |
| CTGGTCATGACAATTAAAAC+TGG | - | chr1_1:40264677-40264696 | Msa0022010:intron | 35.0% | |
| ! | GTGTATGTTATTGGTTGAGT+TGG | - | chr1_1:40264805-40264824 | Msa0022010:intron | 35.0% |
| !! | ATGTTATTGGTTGAGTTGGT+TGG | - | chr1_1:40264809-40264828 | Msa0022010:intron | 35.0% |
| !!! | GTCATCATTGTTGGTTTTTC+TGG | - | chr1_1:40264870-40264889 | Msa0022010:intron | 35.0% |
| TGCTCTGGTAACTTTAGTTA+AGG | - | chr1_1:40265022-40265041 | Msa0022010:intron | 35.0% | |
| !!! | AGGATATTTTAGCATTGTCC+TGG | - | chr1_1:40265101-40265120 | Msa0022010:intron | 35.0% |
| TAGACTTTACAAGGAATGCA+AGG | - | chr1_1:40265393-40265412 | Msa0022010:intron | 35.0% | |
| AGACTTTACAAGGAATGCAA+GGG | - | chr1_1:40265394-40265413 | Msa0022010:intron | 35.0% | |
| !! | GCATTTTGATGAGTAAAACC+CGG | - | chr1_1:40265437-40265456 | Msa0022010:intron | 35.0% |
| !!! | GTAAAACCCGGCTTTTTTTT+AGG | - | chr1_1:40265449-40265468 | Msa0022010:intron | 35.0% |
| TGGAATCCCTAAAAAAAAGC+CGG | + | chr1_1:40265459-40265478 | None:intergenic | 35.0% | |
| AATTTGATATTCCGCTTTGC+AGG | - | chr1_1:40265485-40265504 | Msa0022010:intron | 35.0% | |
| GAACAAAATAACCTGCAAAG+CGG | + | chr1_1:40265499-40265518 | None:intergenic | 35.0% | |
| !! | TTTAGTTCTCCTGCAGATAT+AGG | + | chr1_1:40265819-40265838 | None:intergenic | 35.0% |
| TATATCTGCAGGAGAACTAA+AGG | - | chr1_1:40265818-40265837 | Msa0022010:intron | 35.0% | |
| ! | TACTTTTGCTTCCTTCGTAA+AGG | + | chr1_1:40265903-40265922 | None:intergenic | 35.0% |
| ACGAGAACATAGAATCAAAC+CGG | + | chr1_1:40266071-40266090 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTTTGAGGATCTT+CGG | + | chr1_1:40266176-40266195 | None:intergenic | 35.0% |
| GTCACTTCACTATTGTTAGT+TGG | - | chr1_1:40266249-40266268 | Msa0022010:intron | 35.0% | |
| !! | AACTCTTTAAGGCTGAACAT+CGG | - | chr1_1:40266279-40266298 | Msa0022010:CDS | 35.0% |
| CATAAACTCACCAAGAACAT+TGG | + | chr1_1:40266380-40266399 | None:intergenic | 35.0% | |
| CAATGTTCTTGGTGAGTTTA+TGG | - | chr1_1:40266378-40266397 | Msa0022010:exon | 35.0% | |
| AAATTAATGCACCTCCATGA+TGG | + | chr1_1:40266442-40266461 | None:intergenic | 35.0% | |
| ! | ATGTTGTGCGTTTGAGTTTA+TGG | + | chr1_1:40266482-40266501 | None:intergenic | 35.0% |
| ! | TTTGATTTCTTCATCGTCGG+AGG | + | chr1_1:40262819-40262838 | None:intergenic | 40.0% |
| GATACCAACAACAACAACGA+AGG | - | chr1_1:40262842-40262861 | Msa0022010:three_prime_UTR | 40.0% | |
| AAACCAAAACTCACTCTACC+AGG | - | chr1_1:40262880-40262899 | Msa0022010:three_prime_UTR | 40.0% | |
| ! | TTACCTGGTAGAGTGAGTTT+TGG | + | chr1_1:40262886-40262905 | None:intergenic | 40.0% |
| !! | GCTACATAACAAGTTGGTCT+AGG | + | chr1_1:40263202-40263221 | None:intergenic | 40.0% |
| GTAACATAGGCCTAACAAAC+AGG | + | chr1_1:40263295-40263314 | None:intergenic | 40.0% | |
| TCCAAGAATCGACTAATCTG+AGG | - | chr1_1:40263409-40263428 | Msa0022010:intron | 40.0% | |
| CCAAGAATCGACTAATCTGA+GGG | - | chr1_1:40263410-40263429 | Msa0022010:intron | 40.0% | |
| CAAGAATCGACTAATCTGAG+GGG | - | chr1_1:40263411-40263430 | Msa0022010:intron | 40.0% | |
| !! | AAGCTTGCTCTGGCTTTAAA+CGG | + | chr1_1:40263466-40263485 | None:intergenic | 40.0% |
| ! | ATTCCCTCTGGTGTCAATTT+CGG | + | chr1_1:40263506-40263525 | None:intergenic | 40.0% |
| AAGCATGGGTACTTGTGAAA+AGG | + | chr1_1:40263720-40263739 | None:intergenic | 40.0% | |
| !! | TGTCAGAACCTTTGAAGCAT+GGG | + | chr1_1:40263734-40263753 | None:intergenic | 40.0% |
| !! | TTGTCAGAACCTTTGAAGCA+TGG | + | chr1_1:40263735-40263754 | None:intergenic | 40.0% |
| ! | CTTCAAAGGTTCTGACAAGT+GGG | - | chr1_1:40263737-40263756 | Msa0022010:intron | 40.0% |
| !! | TTGGCCCTGATGTTTGTTTT+TGG | - | chr1_1:40263789-40263808 | Msa0022010:CDS | 40.0% |
| !! | TGGCCCTGATGTTTGTTTTT+GGG | - | chr1_1:40263790-40263809 | Msa0022010:CDS | 40.0% |
| GCTCCCAAAAACAAACATCA+GGG | + | chr1_1:40263796-40263815 | None:intergenic | 40.0% | |
| TGCCTACATCTCTGAGTATA+GGG | + | chr1_1:40263956-40263975 | None:intergenic | 40.0% | |
| ATGCCTACATCTCTGAGTAT+AGG | + | chr1_1:40263957-40263976 | None:intergenic | 40.0% | |
| AGGCATACTTGTACGCAATT+CGG | - | chr1_1:40263971-40263990 | Msa0022010:CDS | 40.0% | |
| AGCTTCCTGCAAATGAAACA+AGG | + | chr1_1:40264165-40264184 | None:intergenic | 40.0% | |
| ! | TTTTTCTTCATCCCCGAGAA+TGG | + | chr1_1:40264222-40264241 | None:intergenic | 40.0% |
| TTCTCGGGGATGAAGAAAAA+CGG | - | chr1_1:40264222-40264241 | Msa0022010:intron | 40.0% | |
| TGAAAACAATGCAACAAGCC+AGG | - | chr1_1:40264596-40264615 | Msa0022010:intron | 40.0% | |
| !! | TTGAGTTGGTTGGTTGTGAA+AGG | - | chr1_1:40264819-40264838 | Msa0022010:intron | 40.0% |
| !! | TGAGTTGGTTGGTTGTGAAA+GGG | - | chr1_1:40264820-40264839 | Msa0022010:intron | 40.0% |
| AATGCAAGGGTAATATGAGC+AGG | - | chr1_1:40265407-40265426 | Msa0022010:intron | 40.0% | |
| GGAATCCCTAAAAAAAAGCC+GGG | + | chr1_1:40265458-40265477 | None:intergenic | 40.0% | |
| ATTGATGAGGCTATAGCTTC+TGG | - | chr1_1:40265568-40265587 | Msa0022010:intron | 40.0% | |
| !! | GCTTGTTTTCCTATATCTGC+AGG | - | chr1_1:40265807-40265826 | Msa0022010:intron | 40.0% |
| ! | TTCCTTCGTAAAGGACTAGT+TGG | + | chr1_1:40265894-40265913 | None:intergenic | 40.0% |
| !! | GCAGAGTTTGGCTTTGTTAT+TGG | - | chr1_1:40265933-40265952 | Msa0022010:intron | 40.0% |
| TATCAAAACGACGAGATGAG+AGG | - | chr1_1:40266040-40266059 | Msa0022010:intron | 40.0% | |
| CGAAGCTACACAGAAAAAGA+TGG | - | chr1_1:40266146-40266165 | Msa0022010:CDS | 40.0% | |
| GAAGATCCTCAAAAAAGCCT+AGG | - | chr1_1:40266175-40266194 | Msa0022010:intron | 40.0% | |
| GACTATACAGAAAGGCAAGT+TGG | + | chr1_1:40266210-40266229 | None:intergenic | 40.0% | |
| !! | ACTCTTTAAGGCTGAACATC+GGG | - | chr1_1:40266280-40266299 | Msa0022010:CDS | 40.0% |
| TGTTACTCTTTCTGCCATCA+TGG | - | chr1_1:40266425-40266444 | Msa0022010:five_prime_UTR | 40.0% | |
| AAGGCGGGAAGAAATTGAGT+TGG | - | chr1_1:40262620-40262639 | Msa0022010:three_prime_UTR | 45.0% | |
| ! | GGAACCTTCGTTGTTGTTGT+TGG | + | chr1_1:40262849-40262868 | None:intergenic | 45.0% |
| CTTCATCCTGATAAGAACCC+TGG | - | chr1_1:40263057-40263076 | Msa0022010:CDS | 45.0% | |
| TCATCACCAGGGTTCTTATC+AGG | + | chr1_1:40263066-40263085 | None:intergenic | 45.0% | |
| ! | TGATAAGAACCCTGGTGATG+AGG | - | chr1_1:40263065-40263084 | Msa0022010:CDS | 45.0% |
| AACGCAGCACAAAGAAAGAG+AGG | + | chr1_1:40263095-40263114 | None:intergenic | 45.0% | |
| ! | CCCTCAGATTAGTCGATTCT+TGG | + | chr1_1:40263413-40263432 | None:intergenic | 45.0% |
| !! | AGCTTGCTCTGGCTTTAAAC+GGG | + | chr1_1:40263465-40263484 | None:intergenic | 45.0% |
| ! | AAGCCAGAGCAAGCTTTGTA+TGG | - | chr1_1:40263470-40263489 | Msa0022010:intron | 45.0% |
| ! | AGTCCATACAAAGCTTGCTC+TGG | + | chr1_1:40263476-40263495 | None:intergenic | 45.0% |
| !! | TAATGGTTGGCTTGGGATCT+TGG | + | chr1_1:40263558-40263577 | None:intergenic | 45.0% |
| AAGATCCCAAGCCAACCATT+AGG | - | chr1_1:40263557-40263576 | Msa0022010:intron | 45.0% | |
| ACTCATACTGGGTACGAGTA+CGG | + | chr1_1:40263674-40263693 | None:intergenic | 45.0% | |
| CACAAGTACCCATGCTTCAA+AGG | - | chr1_1:40263723-40263742 | Msa0022010:intron | 45.0% | |
| ! | GCTTCAAAGGTTCTGACAAG+TGG | - | chr1_1:40263736-40263755 | Msa0022010:intron | 45.0% |
| CGCTCCCAAAAACAAACATC+AGG | + | chr1_1:40263797-40263816 | None:intergenic | 45.0% | |
| !!! | TGTTTGTTTTTGGGAGCGAG+TGG | - | chr1_1:40263799-40263818 | Msa0022010:CDS | 45.0% |
| !!! | GTTTGTTTTTGGGAGCGAGT+GGG | - | chr1_1:40263800-40263819 | Msa0022010:CDS | 45.0% |
| !!! | TTTGTTTTTGGGAGCGAGTG+GGG | - | chr1_1:40263801-40263820 | Msa0022010:CDS | 45.0% |
| AAACCCTTGAACCGTACCAT+GGG | + | chr1_1:40263843-40263862 | None:intergenic | 45.0% | |
| AAAACCCTTGAACCGTACCA+TGG | + | chr1_1:40263844-40263863 | None:intergenic | 45.0% | |
| GTCCCTATACTCAGAGATGT+AGG | - | chr1_1:40263951-40263970 | Msa0022010:CDS | 45.0% | |
| AGTTTGACAAGGGGGCTATA+AGG | + | chr1_1:40264069-40264088 | None:intergenic | 45.0% | |
| ACCTGACAGAGTTTGACAAG+GGG | + | chr1_1:40264078-40264097 | None:intergenic | 45.0% | |
| CACCTGACAGAGTTTGACAA+GGG | + | chr1_1:40264079-40264098 | None:intergenic | 45.0% | |
| ACACCTGACAGAGTTTGACA+AGG | + | chr1_1:40264080-40264099 | None:intergenic | 45.0% | |
| AAAATGCAGCTCAAGTGGTG+TGG | + | chr1_1:40264113-40264132 | None:intergenic | 45.0% | |
| ! | ACCACTTGAGCTGCATTTTG+TGG | - | chr1_1:40264114-40264133 | Msa0022010:intron | 45.0% |
| ACCACAAAATGCAGCTCAAG+TGG | + | chr1_1:40264118-40264137 | None:intergenic | 45.0% | |
| TCTCGGGGATGAAGAAAAAC+GGG | - | chr1_1:40264223-40264242 | Msa0022010:intron | 45.0% | |
| CGGGCACTTTATGATGAAAC+TGG | - | chr1_1:40264242-40264261 | Msa0022010:intron | 45.0% | |
| TCAAAGGCAAGGTAGGGAAA+AGG | - | chr1_1:40264763-40264782 | Msa0022010:intron | 45.0% | |
| CAACAATGATGACCCTCCAT+AGG | + | chr1_1:40264863-40264882 | None:intergenic | 45.0% | |
| CTATGGAGGGTCATCATTGT+TGG | - | chr1_1:40264861-40264880 | Msa0022010:intron | 45.0% | |
| TCTGAACTACATCTCCTGCA+AGG | + | chr1_1:40265176-40265195 | None:intergenic | 45.0% | |
| ! | ACAAGCGTATACAAGGCACT+AGG | + | chr1_1:40265266-40265285 | None:intergenic | 45.0% |
| GCCTTGTATACGCTTGTTCT+CGG | - | chr1_1:40265269-40265288 | Msa0022010:intron | 45.0% | |
| ACCGAGAACAAGCGTATACA+AGG | + | chr1_1:40265273-40265292 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr1_1:40265321-40265340 | Msa0022010:intron | 45.0% | |
| AATCGATGCGAGTCGAGTTT+AGG | + | chr1_1:40265538-40265557 | None:intergenic | 45.0% | |
| !! | CTTCGTAAAGGACTAGTTGG+CGG | + | chr1_1:40265891-40265910 | None:intergenic | 45.0% |
| AATTCCTCTTCAGAGGGTTC+GGG | + | chr1_1:40266126-40266145 | None:intergenic | 45.0% | |
| GAATTCCTCTTCAGAGGGTT+CGG | + | chr1_1:40266127-40266146 | None:intergenic | 45.0% | |
| GCTTCGAATTCCTCTTCAGA+GGG | + | chr1_1:40266132-40266151 | None:intergenic | 45.0% | |
| AGCTTCGAATTCCTCTTCAG+AGG | + | chr1_1:40266133-40266152 | None:intergenic | 45.0% | |
| !!! | CTTTCGCCTAGGCTTTTTTG+AGG | + | chr1_1:40266184-40266203 | None:intergenic | 45.0% |
| !! | CAAGTTGGTTACTTTCGCCT+AGG | + | chr1_1:40266195-40266214 | None:intergenic | 45.0% |
| !! | CTCTTTAAGGCTGAACATCG+GGG | - | chr1_1:40266281-40266300 | Msa0022010:CDS | 45.0% |
| TACTCTTTCTGCCATCATGG+AGG | - | chr1_1:40266428-40266447 | Msa0022010:five_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTTATATCAA+AGG | - | chr1_1:40264747-40264766 | Msa0022010:intron | 5.0% |
| AGAGTGATGGCAGAAGCGAA+AGG | - | chr1_1:40262601-40262620 | Msa0022010:three_prime_UTR | 50.0% | |
| AGAGGCTAACCTCATCACCA+GGG | + | chr1_1:40263077-40263096 | None:intergenic | 50.0% | |
| !! | GCTTGCTCTGGCTTTAAACG+GGG | + | chr1_1:40263464-40263483 | None:intergenic | 50.0% |
| ! | CCTCTGGTGTCAATTTCGGT+GGG | + | chr1_1:40263502-40263521 | None:intergenic | 50.0% |
| CCACCGAAATTGACACCAGA+GGG | - | chr1_1:40263500-40263519 | Msa0022010:intron | 50.0% | |
| GGAATCGAACCTGAGACCTT+TGG | - | chr1_1:40263521-40263540 | Msa0022010:intron | 50.0% | |
| ATCGAACCTGAGACCTTTGG+AGG | - | chr1_1:40263524-40263543 | Msa0022010:intron | 50.0% | |
| TTTGCTCCTCCAAAGGTCTC+AGG | + | chr1_1:40263533-40263552 | None:intergenic | 50.0% | |
| ! | CTTGGAGTTTGCTCCTCCAA+AGG | + | chr1_1:40263540-40263559 | None:intergenic | 50.0% |
| !! | GTTGGCCTAATGGTTGGCTT+GGG | + | chr1_1:40263565-40263584 | None:intergenic | 50.0% |
| !! | TTTGGGGTTGGCCTAATGGT+TGG | + | chr1_1:40263571-40263590 | None:intergenic | 50.0% |
| ACCATTAGGCCAACCCCAAA+TGG | - | chr1_1:40263571-40263590 | Msa0022010:intron | 50.0% | |
| CCATTAGGCCAACCCCAAAT+GGG | - | chr1_1:40263572-40263591 | Msa0022010:intron | 50.0% | |
| ! | AAAGGTTCTGACAAGTGGGC+AGG | - | chr1_1:40263741-40263760 | Msa0022010:intron | 50.0% |
| ! | AAGGTTCTGACAAGTGGGCA+GGG | - | chr1_1:40263742-40263761 | Msa0022010:intron | 50.0% |
| AACCCTTGAACCGTACCATG+GGG | + | chr1_1:40263842-40263861 | None:intergenic | 50.0% | |
| CCTGACAGAGTTTGACAAGG+GGG | + | chr1_1:40264077-40264096 | None:intergenic | 50.0% | |
| CATAGGATCAGCACCTACCA+AGG | + | chr1_1:40264846-40264865 | None:intergenic | 50.0% | |
| !! | CTTGGTAGGTGCTGATCCTA+TGG | - | chr1_1:40264844-40264863 | Msa0022010:intron | 50.0% |
| !! | GTAGGTGCTGATCCTATGGA+GGG | - | chr1_1:40264848-40264867 | Msa0022010:intron | 50.0% |
| CTGAGCTGTCAACAATGTCC+AGG | + | chr1_1:40265122-40265141 | None:intergenic | 50.0% | |
| TCTGAAAACCAGGACCTTGC+AGG | - | chr1_1:40265159-40265178 | Msa0022010:intron | 50.0% | |
| !! | ACTCGACTCGCATCGATTCA+AGG | - | chr1_1:40265540-40265559 | Msa0022010:intron | 50.0% |
| !! | TAAAGGACTAGTTGGCGGCT+TGG | + | chr1_1:40265886-40265905 | None:intergenic | 50.0% |
| CGCCAACTAGTCCTTTACGA+AGG | - | chr1_1:40265889-40265908 | Msa0022010:intron | 50.0% | |
| GACGAGATGAGAGGAAAGAC+CGG | - | chr1_1:40266049-40266068 | Msa0022010:intron | 50.0% | |
| GTGATGGCAGAAGCGAAAGG+CGG | - | chr1_1:40262604-40262623 | Msa0022010:three_prime_UTR | 55.0% | |
| TGATGGCAGAAGCGAAAGGC+GGG | - | chr1_1:40262605-40262624 | Msa0022010:three_prime_UTR | 55.0% | |
| GAGAGGCTAACCTCATCACC+AGG | + | chr1_1:40263078-40263097 | None:intergenic | 55.0% | |
| CCCACCGAAATTGACACCAG+AGG | - | chr1_1:40263499-40263518 | Msa0022010:intron | 55.0% | |
| ! | CCCTCTGGTGTCAATTTCGG+TGG | + | chr1_1:40263503-40263522 | None:intergenic | 55.0% |
| GTCTCAGGTTCGATTCCCTC+TGG | + | chr1_1:40263518-40263537 | None:intergenic | 55.0% | |
| !! | GGTTGGCCTAATGGTTGGCT+TGG | + | chr1_1:40263566-40263585 | None:intergenic | 55.0% |
| !! | CCCATTTGGGGTTGGCCTAA+TGG | + | chr1_1:40263575-40263594 | None:intergenic | 55.0% |
| TGAGCAGAGTGAGTTGCGCT+TGG | - | chr1_1:40263770-40263789 | Msa0022010:CDS | 55.0% | |
| ACCCTTGAACCGTACCATGG+GGG | + | chr1_1:40263841-40263860 | None:intergenic | 55.0% | |
| CCCCCTTGTCAAACTCTGTC+AGG | - | chr1_1:40264074-40264093 | Msa0022010:intron | 55.0% | |
| ! | GGTTGGTTGTGAAAGGGCCT+TGG | - | chr1_1:40264826-40264845 | Msa0022010:intron | 55.0% |
| GGTTGTGAAAGGGCCTTGGT+AGG | - | chr1_1:40264830-40264849 | Msa0022010:intron | 55.0% | |
| !! | GGTAGGTGCTGATCCTATGG+AGG | - | chr1_1:40264847-40264866 | Msa0022010:intron | 55.0% |
| CTACATCTCCTGCAAGGTCC+TGG | + | chr1_1:40265170-40265189 | None:intergenic | 55.0% | |
| ! | TGAGTTGGAGCGCCCAATCC+TGG | - | chr1_1:40262635-40262654 | Msa0022010:three_prime_UTR | 60.0% |
| CCAATTCCACCGCCCACTTG+CGG | - | chr1_1:40263435-40263454 | Msa0022010:intron | 60.0% | |
| CAATTCCACCGCCCACTTGC+GGG | - | chr1_1:40263436-40263455 | Msa0022010:intron | 60.0% | |
| AATTCCACCGCCCACTTGCG+GGG | - | chr1_1:40263437-40263456 | Msa0022010:intron | 60.0% | |
| !! | TTTTGGGAGCGAGTGGGGTG+TGG | - | chr1_1:40263806-40263825 | Msa0022010:CDS | 60.0% |
| TTTGGGAGCGAGTGGGGTGT+GGG | - | chr1_1:40263807-40263826 | Msa0022010:CDS | 60.0% | |
| GGGACAAAGCCCCCATGGTA+CGG | - | chr1_1:40263829-40263848 | Msa0022010:CDS | 60.0% | |
| AGCCCCCATGGTACGGTTCA+AGG | - | chr1_1:40263836-40263855 | Msa0022010:intron | 60.0% | |
| GCCCCCATGGTACGGTTCAA+GGG | - | chr1_1:40263837-40263856 | Msa0022010:intron | 60.0% | |
| CTTCAGAGGGTTCGGGCACA+TGG | + | chr1_1:40266119-40266138 | None:intergenic | 60.0% | |
| ! | TGTGCCCGAACCCTCTGAAG+AGG | - | chr1_1:40266119-40266138 | Msa0022010:CDS | 60.0% |
| CCGCAAGTGGGCGGTGGAAT+TGG | + | chr1_1:40263438-40263457 | None:intergenic | 65.0% | |
| ATTCCACCGCCCACTTGCGG+GGG | - | chr1_1:40263438-40263457 | Msa0022010:intron | 65.0% | |
| TAAACGGGGCCCCCGCAAGT+GGG | + | chr1_1:40263450-40263469 | None:intergenic | 65.0% | |
| TTAAACGGGGCCCCCGCAAG+TGG | + | chr1_1:40263451-40263470 | None:intergenic | 65.0% | |
| TTGGGAGCGAGTGGGGTGTG+GGG | - | chr1_1:40263808-40263827 | Msa0022010:CDS | 65.0% | |
| TGTGGGGGACAAAGCCCCCA+TGG | - | chr1_1:40263824-40263843 | Msa0022010:CDS | 65.0% | |
| TGGGAGCGAGTGGGGTGTGG+GGG | - | chr1_1:40263809-40263828 | Msa0022010:CDS | 70.0% | |
| ! | ACGGGGCCCCCGCAAGTGGG+CGG | + | chr1_1:40263447-40263466 | None:intergenic | 80.0% |
| ! | GGGCCCCCGCAAGTGGGCGG+TGG | + | chr1_1:40263444-40263463 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 40262595 | 40266578 | 40262595 | ID=Msa0022010;Name=Msa0022010 |
| chr1_1 | mRNA | 40262595 | 40266578 | 40262595 | ID=Msa0022010-mRNA-1;Parent=Msa0022010;Name=Msa0022010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=187|1|1|1|1|1|8|372|288 |
| chr1_1 | exon | 40262595 | 40263171 | 40262595 | ID=Msa0022010-mRNA-1:exon:12165;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40263254 | 40263344 | 40263254 | ID=Msa0022010-mRNA-1:exon:12164;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40263584 | 40263666 | 40263584 | ID=Msa0022010-mRNA-1:exon:12163;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40263745 | 40263851 | 40263745 | ID=Msa0022010-mRNA-1:exon:12162;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40263943 | 40264002 | 40263943 | ID=Msa0022010-mRNA-1:exon:12161;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40264893 | 40264994 | 40264893 | ID=Msa0022010-mRNA-1:exon:12160;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40266087 | 40266185 | 40266087 | ID=Msa0022010-mRNA-1:exon:12159;Parent=Msa0022010-mRNA-1 |
| chr1_1 | exon | 40266272 | 40266578 | 40266272 | ID=Msa0022010-mRNA-1:exon:12158;Parent=Msa0022010-mRNA-1 |
| chr1_1 | five_prime_UTR | 40266392 | 40266578 | 40266392 | ID=Msa0022010-mRNA-1:five_prime_utr;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40266272 | 40266391 | 40266272 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40266087 | 40266185 | 40266087 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40264893 | 40264994 | 40264893 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40263943 | 40264002 | 40263943 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40263745 | 40263851 | 40263745 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40263584 | 40263666 | 40263584 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40263254 | 40263344 | 40263254 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | CDS | 40262967 | 40263171 | 40262967 | ID=Msa0022010-mRNA-1:cds;Parent=Msa0022010-mRNA-1 |
| chr1_1 | three_prime_UTR | 40262595 | 40262966 | 40262595 | ID=Msa0022010-mRNA-1:three_prime_utr;Parent=Msa0022010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
