AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1135890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135890 MtrunA17_Chr7g0217171 100.000 120 0 0 1 120 1 120 3.72e-83 238
Msa1135890 MtrunA17_Chr8g0361721 99.160 119 1 0 1 119 1 119 2.16e-81 234
Msa1135890 MtrunA17_Chr5g0417101 96.667 120 4 0 1 120 1 120 2.26e-80 231
Msa1135890 MtrunA17_Chr7g0217651 75.510 49 12 0 1 49 1 49 2.07e-21 80.5
Msa1135890 MtrunA17_Chr8g0343321 74.545 55 13 1 66 119 66 120 9.06e-20 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1135890 AT1G26880.1 90.833 120 11 0 1 120 1 120 2.67e-75 219
Msa1135890 AT1G69620.1 91.597 119 10 0 1 119 1 119 1.03e-74 217
Msa1135890 AT3G28900.1 88.333 120 14 0 1 120 1 120 5.19e-73 213
Msa1135890 AT1G26880.2 91.304 92 8 0 1 92 1 92 7.25e-58 174

Find 44 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACCGCCGCACTGTTAAC+AGG 0.305052 7_4:+3671395 Msa1135890:CDS
TGGATCCTCTTTCCAGTAAC+AGG 0.314412 7_4:-3669990 None:intergenic
GGACCTAAGTGTCCTGTTAC+TGG 0.331250 7_4:+3669978 Msa1135890:CDS
CGCACTGTTAACAGGGCTTA+TGG 0.356563 7_4:+3671403 Msa1135890:CDS
ATGGAAATCCTCTACTGAAA+TGG 0.387347 7_4:+3671841 Msa1135890:three_prime_UTR
AACACGATGCTGGTTGGATT+TGG 0.389836 7_4:-3669756 None:intergenic
CGCCCCTCTTCCATTTCTCT+AGG 0.400610 7_4:+3669664 Msa1135890:five_prime_UTR
CCATTCAAAGTCAAAACTCT+TGG 0.414686 7_4:-3671697 None:intergenic
CCTTTCCCTAACTGCTCCTC+CGG 0.445304 7_4:-3671437 None:intergenic
TTTCCATTTAAAATGTGCAT+TGG 0.456343 7_4:-3671825 None:intergenic
TTAACAGTGCGGCGGTTCCT+AGG 0.468395 7_4:-3671391 None:intergenic
GTGATGAAACCCTAGAGAAA+TGG 0.496115 7_4:-3669674 None:intergenic
TGGGCACAAATCTAAACAAA+AGG 0.498206 7_4:-3671677 None:intergenic
GCCCCTCTTCCATTTCTCTA+GGG 0.501087 7_4:+3669665 Msa1135890:five_prime_UTR
AATGGTGTTAATTATGAATG+TGG 0.505002 7_4:+3671715 Msa1135890:three_prime_UTR
TTTCCAGTAACAGGACACTT+AGG 0.509665 7_4:-3669981 None:intergenic
TTTATCCGGAGGAGCAGTTA+GGG 0.512833 7_4:+3671432 Msa1135890:CDS
CATTCAAAGTCAAAACTCTT+GGG 0.524584 7_4:-3671696 None:intergenic
ACGATGCTGGTTGGATTTGG+TGG 0.532546 7_4:-3669753 None:intergenic
CATCGTGTTGTTAAGACACC+TGG 0.536949 7_4:+3669770 Msa1135890:CDS
AATAGAAACCATTTCAGTAG+AGG 0.537441 7_4:-3671849 None:intergenic
AGTGTCCTGTTACTGGAAAG+AGG 0.543803 7_4:+3669985 Msa1135890:CDS
CTTAACAACACGATGCTGGT+TGG 0.545517 7_4:-3669762 None:intergenic
GTTACTGGAAAGAGGATCCA+AGG 0.571456 7_4:+3669993 Msa1135890:CDS
ACAACTAAGAAGAGAGCTAG+TGG 0.577057 7_4:+3669957 Msa1135890:CDS
GTGTCTTAACAACACGATGC+TGG 0.578379 7_4:-3669766 None:intergenic
TGGCATAGCTGTGTCTCCTA+CGG 0.580308 7_4:-3669733 None:intergenic
GCTCTTCAACAAGGAAAGCA+CGG 0.587996 7_4:-3671553 None:intergenic
CCGGAGGAGCAGTTAGGGAA+AGG 0.595594 7_4:+3671437 Msa1135890:CDS
AAACCCTAGAGAAATGGAAG+AGG 0.602093 7_4:-3669668 None:intergenic
CTAGACCTCTTGTATTCAGT+AGG 0.617053 7_4:-3671364 None:intergenic
AACCCTAGAGAAATGGAAGA+GGG 0.617923 7_4:-3669667 None:intergenic
TTACTGGAAAGAGGATCCAA+GGG 0.629653 7_4:+3669994 Msa1135890:CDS
TGAGACCTACTGAATACAAG+AGG 0.631121 7_4:+3671359 Msa1135890:CDS
ACAAGAGGTCTAGATTGCCT+AGG 0.636078 7_4:+3671374 Msa1135890:CDS
TATTCAGTAGGTCTCAAGTG+TGG 0.667813 7_4:-3671352 None:intergenic
AAGCCCTGTTAACAGTGCGG+CGG 0.691394 7_4:-3671399 None:intergenic
ACTGTTAACAGGGCTTATGG+AGG 0.693206 7_4:+3671406 Msa1135890:CDS
CACAACAACAACAATCACCA+TGG 0.694645 7_4:+3669694 Msa1135890:exon
ACCCTAGAGAAATGGAAGAG+GGG 0.696091 7_4:-3669666 None:intergenic
TTCAGAGACTCACATACCGT+AGG 0.721913 7_4:+3669717 Msa1135890:CDS
CATAAGCCCTGTTAACAGTG+CGG 0.730145 7_4:-3671402 None:intergenic
TACTGGAAAGAGGATCCAAG+GGG 0.738216 7_4:+3669995 Msa1135890:CDS
GTATGTGAGTCTCTGAACCA+TGG 0.739024 7_4:-3669711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAAATTGAAAATATT+AGG + chr7_4:3670224-3670243 Msa1135890:intron 10.0%
!! ATTATAAAATCAATTATTTG+TGG + chr7_4:3670294-3670313 Msa1135890:intron 10.0%
!! ACATTAAACAAAAAAATTTA+GGG - chr7_4:3670486-3670505 None:intergenic 10.0%
!! AACATTAAACAAAAAAATTT+AGG - chr7_4:3670487-3670506 None:intergenic 10.0%
!!! TAAATTTTTTTGTTTAATGT+TGG + chr7_4:3670486-3670505 Msa1135890:intron 10.0%
!!! AAATTTTTTTGTTTAATGTT+GGG + chr7_4:3670487-3670506 Msa1135890:intron 10.0%
!!! TTAATTTCAAATTGATTTTA+TGG + chr7_4:3671741-3671760 Msa1135890:three_prime_UTR 10.0%
!! AATTGAAAATTGAAAATATT+AGG + chr7_4:3670224-3670243 Msa1135890:intron 10.0%
!! ATTATAAAATCAATTATTTG+TGG + chr7_4:3670294-3670313 Msa1135890:intron 10.0%
!! ACATTAAACAAAAAAATTTA+GGG - chr7_4:3670486-3670505 None:intergenic 10.0%
!! AACATTAAACAAAAAAATTT+AGG - chr7_4:3670487-3670506 None:intergenic 10.0%
!!! TAAATTTTTTTGTTTAATGT+TGG + chr7_4:3670486-3670505 Msa1135890:intron 10.0%
!!! AAATTTTTTTGTTTAATGTT+GGG + chr7_4:3670487-3670506 Msa1135890:intron 10.0%
!!! TTAATTTCAAATTGATTTTA+TGG + chr7_4:3671741-3671760 Msa1135890:three_prime_UTR 10.0%
!! ATTAATAATCTGTTATACAT+AGG + chr7_4:3670049-3670068 Msa1135890:intron 15.0%
!! TTTGCAATTATTAATGTTAA+TGG + chr7_4:3670259-3670278 Msa1135890:intron 15.0%
!! ACTTGAAAATTGAAAATATT+AGG - chr7_4:3670402-3670421 None:intergenic 15.0%
!! TTACAAATCTTCAATAAAAA+TGG - chr7_4:3670814-3670833 None:intergenic 15.0%
!! TAACAAATCTTCAATAAAAA+TGG - chr7_4:3670839-3670858 None:intergenic 15.0%
!! ATTAATAATCTGTTATACAT+AGG + chr7_4:3670049-3670068 Msa1135890:intron 15.0%
!! TTTGCAATTATTAATGTTAA+TGG + chr7_4:3670259-3670278 Msa1135890:intron 15.0%
!! ACTTGAAAATTGAAAATATT+AGG - chr7_4:3670402-3670421 None:intergenic 15.0%
!! TTACAAATCTTCAATAAAAA+TGG - chr7_4:3670814-3670833 None:intergenic 15.0%
!! TAACAAATCTTCAATAAAAA+TGG - chr7_4:3670839-3670858 None:intergenic 15.0%
!!! TTTTGATTGATTTGTGAAAA+TGG + chr7_4:3669898-3669917 Msa1135890:intron 20.0%
!!! TTTGATTGATTTGTGAAAAT+GGG + chr7_4:3669899-3669918 Msa1135890:intron 20.0%
!!! AAATCAATTACTGTGTTTTT+TGG + chr7_4:3670565-3670584 Msa1135890:intron 20.0%
!!! TTAATACTACAATTTTGTGA+GGG - chr7_4:3670999-3671018 None:intergenic 20.0%
!!! TTTAATACTACAATTTTGTG+AGG - chr7_4:3671000-3671019 None:intergenic 20.0%
!! GAATGAAAATTAAAAGTAGT+AGG - chr7_4:3671211-3671230 None:intergenic 20.0%
!!! TTTTGATTGATTTGTGAAAA+TGG + chr7_4:3669898-3669917 Msa1135890:intron 20.0%
!!! TTTGATTGATTTGTGAAAAT+GGG + chr7_4:3669899-3669918 Msa1135890:intron 20.0%
!!! AAATCAATTACTGTGTTTTT+TGG + chr7_4:3670565-3670584 Msa1135890:intron 20.0%
!!! TTAATACTACAATTTTGTGA+GGG - chr7_4:3670999-3671018 None:intergenic 20.0%
!!! TTTAATACTACAATTTTGTG+AGG - chr7_4:3671000-3671019 None:intergenic 20.0%
!! GAATGAAAATTAAAAGTAGT+AGG - chr7_4:3671211-3671230 None:intergenic 20.0%
!!! TTAGCTTTAACTTCAATGTT+GGG + chr7_4:3670352-3670371 Msa1135890:intron 25.0%
! TTTAATGTTGGGTTTATTGT+AGG + chr7_4:3670498-3670517 Msa1135890:intron 25.0%
! GACTTAACTAAAAAAACAGA+CGG - chr7_4:3670792-3670811 None:intergenic 25.0%
! ATCTATCATGTTTCAAACAT+AGG - chr7_4:3670863-3670882 None:intergenic 25.0%
! AGATACCCTTTCTAAATTAT+TGG + chr7_4:3671019-3671038 Msa1135890:intron 25.0%
! AGTCACCAATAATTTAGAAA+GGG - chr7_4:3671027-3671046 None:intergenic 25.0%
! GCATCATTGAAATTATACAA+TGG - chr7_4:3671112-3671131 None:intergenic 25.0%
! GAAAATTAAAAGTAGTAGGT+AGG - chr7_4:3671207-3671226 None:intergenic 25.0%
!!! AGTTAAGCTGATTTTATCAA+TGG + chr7_4:3671635-3671654 Msa1135890:exon 25.0%
!! AATGGTGTTAATTATGAATG+TGG + chr7_4:3671715-3671734 Msa1135890:three_prime_UTR 25.0%
!! TTTCCATTTAAAATGTGCAT+TGG - chr7_4:3671828-3671847 None:intergenic 25.0%
!!! TTAGCTTTAACTTCAATGTT+GGG + chr7_4:3670352-3670371 Msa1135890:intron 25.0%
! TTTAATGTTGGGTTTATTGT+AGG + chr7_4:3670498-3670517 Msa1135890:intron 25.0%
! GACTTAACTAAAAAAACAGA+CGG - chr7_4:3670792-3670811 None:intergenic 25.0%
! ATCTATCATGTTTCAAACAT+AGG - chr7_4:3670863-3670882 None:intergenic 25.0%
! AGATACCCTTTCTAAATTAT+TGG + chr7_4:3671019-3671038 Msa1135890:intron 25.0%
! AGTCACCAATAATTTAGAAA+GGG - chr7_4:3671027-3671046 None:intergenic 25.0%
! GCATCATTGAAATTATACAA+TGG - chr7_4:3671112-3671131 None:intergenic 25.0%
! GAAAATTAAAAGTAGTAGGT+AGG - chr7_4:3671207-3671226 None:intergenic 25.0%
!!! AGTTAAGCTGATTTTATCAA+TGG + chr7_4:3671635-3671654 Msa1135890:exon 25.0%
!! AATGGTGTTAATTATGAATG+TGG + chr7_4:3671715-3671734 Msa1135890:three_prime_UTR 25.0%
!! TTTCCATTTAAAATGTGCAT+TGG - chr7_4:3671828-3671847 None:intergenic 25.0%
!!! AAATGGGTTTGTGTTGTTTT+AGG + chr7_4:3669915-3669934 Msa1135890:intron 30.0%
TGTTGTGAAGAAATGTAGAT+TGG + chr7_4:3670115-3670134 Msa1135890:intron 30.0%
GAAGAAATGTAGATTGGTAT+AGG + chr7_4:3670121-3670140 Msa1135890:intron 30.0%
!! GGTATAGGAGTATTTATGAT+AGG + chr7_4:3670136-3670155 Msa1135890:intron 30.0%
TTGTCTGTGTCATGTAAAAT+AGG + chr7_4:3670191-3670210 Msa1135890:intron 30.0%
!! CTTAGCTTTAACTTCAATGT+TGG + chr7_4:3670351-3670370 Msa1135890:intron 30.0%
TTGAATTCGTCTATGTTAGT+TGG - chr7_4:3670432-3670451 None:intergenic 30.0%
!!! TGTGTTTTTTGGATTTACTG+TGG + chr7_4:3670576-3670595 Msa1135890:intron 30.0%
!!! GTGTTTTTTGGATTTACTGT+GGG + chr7_4:3670577-3670596 Msa1135890:intron 30.0%
!!! TGTTTTTTGGATTTACTGTG+GGG + chr7_4:3670578-3670597 Msa1135890:intron 30.0%
ACAAACTCTCTTCTGTAATA+GGG - chr7_4:3670674-3670693 None:intergenic 30.0%
AACAAACTCTCTTCTGTAAT+AGG - chr7_4:3670675-3670694 None:intergenic 30.0%
! AAAATTGATGATAGCGTCAA+AGG - chr7_4:3670909-3670928 None:intergenic 30.0%
CAGTCACCAATAATTTAGAA+AGG - chr7_4:3671028-3671047 None:intergenic 30.0%
TTATCATGTTTGTTCTGTTC+TGG + chr7_4:3671313-3671332 Msa1135890:intron 30.0%
!!! CTATTTTTTGCTCTTCAACA+AGG - chr7_4:3671565-3671584 None:intergenic 30.0%
!!! CTTGCTTTTCTTTTGTTTTC+TGG - chr7_4:3671607-3671626 None:intergenic 30.0%
CATTCAAAGTCAAAACTCTT+GGG - chr7_4:3671699-3671718 None:intergenic 30.0%
! GTTCCAATGCACATTTTAAA+TGG + chr7_4:3671822-3671841 Msa1135890:three_prime_UTR 30.0%
AATAGAAACCATTTCAGTAG+AGG - chr7_4:3671852-3671871 None:intergenic 30.0%
!!! AAATGGGTTTGTGTTGTTTT+AGG + chr7_4:3669915-3669934 Msa1135890:intron 30.0%
TGTTGTGAAGAAATGTAGAT+TGG + chr7_4:3670115-3670134 Msa1135890:intron 30.0%
GAAGAAATGTAGATTGGTAT+AGG + chr7_4:3670121-3670140 Msa1135890:intron 30.0%
!! GGTATAGGAGTATTTATGAT+AGG + chr7_4:3670136-3670155 Msa1135890:intron 30.0%
TTGTCTGTGTCATGTAAAAT+AGG + chr7_4:3670191-3670210 Msa1135890:intron 30.0%
!! CTTAGCTTTAACTTCAATGT+TGG + chr7_4:3670351-3670370 Msa1135890:intron 30.0%
TTGAATTCGTCTATGTTAGT+TGG - chr7_4:3670432-3670451 None:intergenic 30.0%
!!! TGTGTTTTTTGGATTTACTG+TGG + chr7_4:3670576-3670595 Msa1135890:intron 30.0%
!!! GTGTTTTTTGGATTTACTGT+GGG + chr7_4:3670577-3670596 Msa1135890:intron 30.0%
!!! TGTTTTTTGGATTTACTGTG+GGG + chr7_4:3670578-3670597 Msa1135890:intron 30.0%
ACAAACTCTCTTCTGTAATA+GGG - chr7_4:3670674-3670693 None:intergenic 30.0%
AACAAACTCTCTTCTGTAAT+AGG - chr7_4:3670675-3670694 None:intergenic 30.0%
! AAAATTGATGATAGCGTCAA+AGG - chr7_4:3670909-3670928 None:intergenic 30.0%
CAGTCACCAATAATTTAGAA+AGG - chr7_4:3671028-3671047 None:intergenic 30.0%
TTATCATGTTTGTTCTGTTC+TGG + chr7_4:3671313-3671332 Msa1135890:intron 30.0%
!!! CTATTTTTTGCTCTTCAACA+AGG - chr7_4:3671565-3671584 None:intergenic 30.0%
!!! CTTGCTTTTCTTTTGTTTTC+TGG - chr7_4:3671607-3671626 None:intergenic 30.0%
CATTCAAAGTCAAAACTCTT+GGG - chr7_4:3671699-3671718 None:intergenic 30.0%
! GTTCCAATGCACATTTTAAA+TGG + chr7_4:3671822-3671841 Msa1135890:three_prime_UTR 30.0%
AATAGAAACCATTTCAGTAG+AGG - chr7_4:3671852-3671871 None:intergenic 30.0%
TGACAAAGAAGAACATTACC+AGG - chr7_4:3669791-3669810 None:intergenic 35.0%
!!! TGTTGTTTTAGGTGGAAAGT+TGG + chr7_4:3669926-3669945 Msa1135890:intron 35.0%
TCATATAGATACATACCCCT+TGG - chr7_4:3670013-3670032 None:intergenic 35.0%
! GGACTTGTGTTATTCACTAA+TGG + chr7_4:3670157-3670176 Msa1135890:intron 35.0%
GTTTATTGAGCGAATGTTCT+TGG + chr7_4:3670316-3670335 Msa1135890:intron 35.0%
!! GTTCGCTTTTACTGTCTTTT+AGG + chr7_4:3670612-3670631 Msa1135890:intron 35.0%
CAACACAATCTTCAATCAGA+TGG - chr7_4:3670644-3670663 None:intergenic 35.0%
! CAATTTTGTGAGGGACAATA+AGG - chr7_4:3670990-3671009 None:intergenic 35.0%
AAAGTTAGATGCTGTGTGAT+AGG - chr7_4:3671086-3671105 None:intergenic 35.0%
GATGCAATTCTACAACATTG+TGG + chr7_4:3671127-3671146 Msa1135890:intron 35.0%
CAATTCTACAACATTGTGGA+AGG + chr7_4:3671131-3671150 Msa1135890:intron 35.0%
!! GAAAGTGTCAAGATTATGCA+GGG - chr7_4:3671185-3671204 None:intergenic 35.0%
TGGGCACAAATCTAAACAAA+AGG - chr7_4:3671680-3671699 None:intergenic 35.0%
CCATTCAAAGTCAAAACTCT+TGG - chr7_4:3671700-3671719 None:intergenic 35.0%
!!! CCAAGAGTTTTGACTTTGAA+TGG + chr7_4:3671697-3671716 Msa1135890:three_prime_UTR 35.0%
ATGGAAATCCTCTACTGAAA+TGG + chr7_4:3671841-3671860 Msa1135890:three_prime_UTR 35.0%
TGACAAAGAAGAACATTACC+AGG - chr7_4:3669791-3669810 None:intergenic 35.0%
!!! TGTTGTTTTAGGTGGAAAGT+TGG + chr7_4:3669926-3669945 Msa1135890:intron 35.0%
TCATATAGATACATACCCCT+TGG - chr7_4:3670013-3670032 None:intergenic 35.0%
! GGACTTGTGTTATTCACTAA+TGG + chr7_4:3670157-3670176 Msa1135890:intron 35.0%
GTTTATTGAGCGAATGTTCT+TGG + chr7_4:3670316-3670335 Msa1135890:intron 35.0%
!! GTTCGCTTTTACTGTCTTTT+AGG + chr7_4:3670612-3670631 Msa1135890:intron 35.0%
CAACACAATCTTCAATCAGA+TGG - chr7_4:3670644-3670663 None:intergenic 35.0%
! CAATTTTGTGAGGGACAATA+AGG - chr7_4:3670990-3671009 None:intergenic 35.0%
AAAGTTAGATGCTGTGTGAT+AGG - chr7_4:3671086-3671105 None:intergenic 35.0%
GATGCAATTCTACAACATTG+TGG + chr7_4:3671127-3671146 Msa1135890:intron 35.0%
CAATTCTACAACATTGTGGA+AGG + chr7_4:3671131-3671150 Msa1135890:intron 35.0%
!! GAAAGTGTCAAGATTATGCA+GGG - chr7_4:3671185-3671204 None:intergenic 35.0%
TGGGCACAAATCTAAACAAA+AGG - chr7_4:3671680-3671699 None:intergenic 35.0%
CCATTCAAAGTCAAAACTCT+TGG - chr7_4:3671700-3671719 None:intergenic 35.0%
!!! CCAAGAGTTTTGACTTTGAA+TGG + chr7_4:3671697-3671716 Msa1135890:three_prime_UTR 35.0%
ATGGAAATCCTCTACTGAAA+TGG + chr7_4:3671841-3671860 Msa1135890:three_prime_UTR 35.0%
AACCCTAGAGAAATGGAAGA+GGG - chr7_4:3669670-3669689 None:intergenic 40.0%
AAACCCTAGAGAAATGGAAG+AGG - chr7_4:3669671-3669690 None:intergenic 40.0%
GTGATGAAACCCTAGAGAAA+TGG - chr7_4:3669677-3669696 None:intergenic 40.0%
CACAACAACAACAATCACCA+TGG + chr7_4:3669694-3669713 Msa1135890:exon 40.0%
!!! TGGGTTTGTGTTGTTTTAGG+TGG + chr7_4:3669918-3669937 Msa1135890:intron 40.0%
ACAACTAAGAAGAGAGCTAG+TGG + chr7_4:3669957-3669976 Msa1135890:CDS 40.0%
TTTCCAGTAACAGGACACTT+AGG - chr7_4:3669984-3670003 None:intergenic 40.0%
TTACTGGAAAGAGGATCCAA+GGG + chr7_4:3669994-3670013 Msa1135890:CDS 40.0%
ATAGCGTCAAAGGTCATAGT+TGG - chr7_4:3670899-3670918 None:intergenic 40.0%
TTTGTGAGGGACAATAAGGA+CGG - chr7_4:3670986-3671005 None:intergenic 40.0%
!! GGAAAGTGTCAAGATTATGC+AGG - chr7_4:3671186-3671205 None:intergenic 40.0%
!!! TCATTGCTTTTTCTCCCTGA+TGG + chr7_4:3671238-3671257 Msa1135890:intron 40.0%
TATTCAGTAGGTCTCAAGTG+TGG - chr7_4:3671355-3671374 None:intergenic 40.0%
TGAGACCTACTGAATACAAG+AGG + chr7_4:3671359-3671378 Msa1135890:CDS 40.0%
CTAGACCTCTTGTATTCAGT+AGG - chr7_4:3671367-3671386 None:intergenic 40.0%
!!! GCTTATGGAGGTGTTTTATC+CGG + chr7_4:3671418-3671437 Msa1135890:CDS 40.0%
ACGCTATTCAATCTTTGTGC+AGG + chr7_4:3671525-3671544 Msa1135890:intron 40.0%
AACCCTAGAGAAATGGAAGA+GGG - chr7_4:3669670-3669689 None:intergenic 40.0%
AAACCCTAGAGAAATGGAAG+AGG - chr7_4:3669671-3669690 None:intergenic 40.0%
GTGATGAAACCCTAGAGAAA+TGG - chr7_4:3669677-3669696 None:intergenic 40.0%
CACAACAACAACAATCACCA+TGG + chr7_4:3669694-3669713 Msa1135890:exon 40.0%
!!! TGGGTTTGTGTTGTTTTAGG+TGG + chr7_4:3669918-3669937 Msa1135890:intron 40.0%
ACAACTAAGAAGAGAGCTAG+TGG + chr7_4:3669957-3669976 Msa1135890:CDS 40.0%
TTTCCAGTAACAGGACACTT+AGG - chr7_4:3669984-3670003 None:intergenic 40.0%
TTACTGGAAAGAGGATCCAA+GGG + chr7_4:3669994-3670013 Msa1135890:CDS 40.0%
ATAGCGTCAAAGGTCATAGT+TGG - chr7_4:3670899-3670918 None:intergenic 40.0%
TTTGTGAGGGACAATAAGGA+CGG - chr7_4:3670986-3671005 None:intergenic 40.0%
!! GGAAAGTGTCAAGATTATGC+AGG - chr7_4:3671186-3671205 None:intergenic 40.0%
!!! TCATTGCTTTTTCTCCCTGA+TGG + chr7_4:3671238-3671257 Msa1135890:intron 40.0%
TATTCAGTAGGTCTCAAGTG+TGG - chr7_4:3671355-3671374 None:intergenic 40.0%
TGAGACCTACTGAATACAAG+AGG + chr7_4:3671359-3671378 Msa1135890:CDS 40.0%
CTAGACCTCTTGTATTCAGT+AGG - chr7_4:3671367-3671386 None:intergenic 40.0%
!!! GCTTATGGAGGTGTTTTATC+CGG + chr7_4:3671418-3671437 Msa1135890:CDS 40.0%
ACGCTATTCAATCTTTGTGC+AGG + chr7_4:3671525-3671544 Msa1135890:intron 40.0%
ACCCTAGAGAAATGGAAGAG+GGG - chr7_4:3669669-3669688 None:intergenic 45.0%
GTATGTGAGTCTCTGAACCA+TGG - chr7_4:3669714-3669733 None:intergenic 45.0%
TTCAGAGACTCACATACCGT+AGG + chr7_4:3669717-3669736 Msa1135890:CDS 45.0%
! AACACGATGCTGGTTGGATT+TGG - chr7_4:3669759-3669778 None:intergenic 45.0%
CTTAACAACACGATGCTGGT+TGG - chr7_4:3669765-3669784 None:intergenic 45.0%
GTGTCTTAACAACACGATGC+TGG - chr7_4:3669769-3669788 None:intergenic 45.0%
! CATCGTGTTGTTAAGACACC+TGG + chr7_4:3669770-3669789 Msa1135890:CDS 45.0%
AGTGTCCTGTTACTGGAAAG+AGG + chr7_4:3669985-3670004 Msa1135890:CDS 45.0%
TGGATCCTCTTTCCAGTAAC+AGG - chr7_4:3669993-3670012 None:intergenic 45.0%
GTTACTGGAAAGAGGATCCA+AGG + chr7_4:3669993-3670012 Msa1135890:CDS 45.0%
TACTGGAAAGAGGATCCAAG+GGG + chr7_4:3669995-3670014 Msa1135890:CDS 45.0%
TTGAGCGAATGTTCTTGGAG+TGG + chr7_4:3670321-3670340 Msa1135890:intron 45.0%
TGAGCGAATGTTCTTGGAGT+GGG + chr7_4:3670322-3670341 Msa1135890:intron 45.0%
AGTGCATGTCATGACCATCA+GGG - chr7_4:3671255-3671274 None:intergenic 45.0%
ACAAGAGGTCTAGATTGCCT+AGG + chr7_4:3671374-3671393 Msa1135890:CDS 45.0%
CATAAGCCCTGTTAACAGTG+CGG - chr7_4:3671405-3671424 None:intergenic 45.0%
ACTGTTAACAGGGCTTATGG+AGG + chr7_4:3671406-3671425 Msa1135890:CDS 45.0%
!!! TATGGAGGTGTTTTATCCGG+AGG + chr7_4:3671421-3671440 Msa1135890:CDS 45.0%
! TTTTATCCGGAGGAGCAGTT+AGG + chr7_4:3671431-3671450 Msa1135890:CDS 45.0%
TTTATCCGGAGGAGCAGTTA+GGG + chr7_4:3671432-3671451 Msa1135890:CDS 45.0%
GCTCTTCAACAAGGAAAGCA+CGG - chr7_4:3671556-3671575 None:intergenic 45.0%
ACCCTAGAGAAATGGAAGAG+GGG - chr7_4:3669669-3669688 None:intergenic 45.0%
GTATGTGAGTCTCTGAACCA+TGG - chr7_4:3669714-3669733 None:intergenic 45.0%
TTCAGAGACTCACATACCGT+AGG + chr7_4:3669717-3669736 Msa1135890:CDS 45.0%
! AACACGATGCTGGTTGGATT+TGG - chr7_4:3669759-3669778 None:intergenic 45.0%
CTTAACAACACGATGCTGGT+TGG - chr7_4:3669765-3669784 None:intergenic 45.0%
GTGTCTTAACAACACGATGC+TGG - chr7_4:3669769-3669788 None:intergenic 45.0%
! CATCGTGTTGTTAAGACACC+TGG + chr7_4:3669770-3669789 Msa1135890:CDS 45.0%
AGTGTCCTGTTACTGGAAAG+AGG + chr7_4:3669985-3670004 Msa1135890:CDS 45.0%
TGGATCCTCTTTCCAGTAAC+AGG - chr7_4:3669993-3670012 None:intergenic 45.0%
GTTACTGGAAAGAGGATCCA+AGG + chr7_4:3669993-3670012 Msa1135890:CDS 45.0%
TACTGGAAAGAGGATCCAAG+GGG + chr7_4:3669995-3670014 Msa1135890:CDS 45.0%
TTGAGCGAATGTTCTTGGAG+TGG + chr7_4:3670321-3670340 Msa1135890:intron 45.0%
TGAGCGAATGTTCTTGGAGT+GGG + chr7_4:3670322-3670341 Msa1135890:intron 45.0%
AGTGCATGTCATGACCATCA+GGG - chr7_4:3671255-3671274 None:intergenic 45.0%
ACAAGAGGTCTAGATTGCCT+AGG + chr7_4:3671374-3671393 Msa1135890:CDS 45.0%
CATAAGCCCTGTTAACAGTG+CGG - chr7_4:3671405-3671424 None:intergenic 45.0%
ACTGTTAACAGGGCTTATGG+AGG + chr7_4:3671406-3671425 Msa1135890:CDS 45.0%
!!! TATGGAGGTGTTTTATCCGG+AGG + chr7_4:3671421-3671440 Msa1135890:CDS 45.0%
! TTTTATCCGGAGGAGCAGTT+AGG + chr7_4:3671431-3671450 Msa1135890:CDS 45.0%
TTTATCCGGAGGAGCAGTTA+GGG + chr7_4:3671432-3671451 Msa1135890:CDS 45.0%
GCTCTTCAACAAGGAAAGCA+CGG - chr7_4:3671556-3671575 None:intergenic 45.0%
GCCCCTCTTCCATTTCTCTA+GGG + chr7_4:3669665-3669684 Msa1135890:five_prime_UTR 50.0%
TGGCATAGCTGTGTCTCCTA+CGG - chr7_4:3669736-3669755 None:intergenic 50.0%
! ACGATGCTGGTTGGATTTGG+TGG - chr7_4:3669756-3669775 None:intergenic 50.0%
GGACCTAAGTGTCCTGTTAC+TGG + chr7_4:3669978-3669997 Msa1135890:CDS 50.0%
GAGTGCATGTCATGACCATC+AGG - chr7_4:3671256-3671275 None:intergenic 50.0%
GTCTCAAGTGTGGAATCTGC+AGG - chr7_4:3671345-3671364 None:intergenic 50.0%
CGCACTGTTAACAGGGCTTA+TGG + chr7_4:3671403-3671422 Msa1135890:CDS 50.0%
GCCCCTCTTCCATTTCTCTA+GGG + chr7_4:3669665-3669684 Msa1135890:five_prime_UTR 50.0%
TGGCATAGCTGTGTCTCCTA+CGG - chr7_4:3669736-3669755 None:intergenic 50.0%
! ACGATGCTGGTTGGATTTGG+TGG - chr7_4:3669756-3669775 None:intergenic 50.0%
GGACCTAAGTGTCCTGTTAC+TGG + chr7_4:3669978-3669997 Msa1135890:CDS 50.0%
GAGTGCATGTCATGACCATC+AGG - chr7_4:3671256-3671275 None:intergenic 50.0%
GTCTCAAGTGTGGAATCTGC+AGG - chr7_4:3671345-3671364 None:intergenic 50.0%
CGCACTGTTAACAGGGCTTA+TGG + chr7_4:3671403-3671422 Msa1135890:CDS 50.0%
CGCCCCTCTTCCATTTCTCT+AGG + chr7_4:3669664-3669683 Msa1135890:five_prime_UTR 55.0%
TTAACAGTGCGGCGGTTCCT+AGG - chr7_4:3671394-3671413 None:intergenic 55.0%
GAACCGCCGCACTGTTAACA+GGG + chr7_4:3671396-3671415 Msa1135890:CDS 55.0%
AAGCCCTGTTAACAGTGCGG+CGG - chr7_4:3671402-3671421 None:intergenic 55.0%
CCTTTCCCTAACTGCTCCTC+CGG - chr7_4:3671440-3671459 None:intergenic 55.0%
CGCCCCTCTTCCATTTCTCT+AGG + chr7_4:3669664-3669683 Msa1135890:five_prime_UTR 55.0%
TTAACAGTGCGGCGGTTCCT+AGG - chr7_4:3671394-3671413 None:intergenic 55.0%
GAACCGCCGCACTGTTAACA+GGG + chr7_4:3671396-3671415 Msa1135890:CDS 55.0%
AAGCCCTGTTAACAGTGCGG+CGG - chr7_4:3671402-3671421 None:intergenic 55.0%
CCTTTCCCTAACTGCTCCTC+CGG - chr7_4:3671440-3671459 None:intergenic 55.0%
GGAACCGCCGCACTGTTAAC+AGG + chr7_4:3671395-3671414 Msa1135890:CDS 60.0%
CCGGAGGAGCAGTTAGGGAA+AGG + chr7_4:3671437-3671456 Msa1135890:CDS 60.0%
GGAACCGCCGCACTGTTAAC+AGG + chr7_4:3671395-3671414 Msa1135890:CDS 60.0%
CCGGAGGAGCAGTTAGGGAA+AGG + chr7_4:3671437-3671456 Msa1135890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 3669656 3671954 3669656 ID=Msa1135890;Name=Msa1135890
chr7_4 mRNA 3669656 3671954 3669656 ID=Msa1135890-mRNA-1;Parent=Msa1135890;Name=Msa1135890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=57|1|1|1|1|1|4|314|120
chr7_4 exon 3669656 3669791 3669656 ID=Msa1135890-mRNA-1:exon:1038;Parent=Msa1135890-mRNA-1
chr7_4 exon 3669937 3670016 3669937 ID=Msa1135890-mRNA-1:exon:1039;Parent=Msa1135890-mRNA-1
chr7_4 exon 3671349 3671458 3671349 ID=Msa1135890-mRNA-1:exon:1040;Parent=Msa1135890-mRNA-1
chr7_4 exon 3671547 3671954 3671547 ID=Msa1135890-mRNA-1:exon:1041;Parent=Msa1135890-mRNA-1
chr7_4 five_prime_UTR 3669656 3669712 3669656 ID=Msa1135890-mRNA-1:five_prime_utr;Parent=Msa1135890-mRNA-1
chr7_4 CDS 3669713 3669791 3669713 ID=Msa1135890-mRNA-1:cds;Parent=Msa1135890-mRNA-1
chr7_4 CDS 3669937 3670016 3669937 ID=Msa1135890-mRNA-1:cds;Parent=Msa1135890-mRNA-1
chr7_4 CDS 3671349 3671458 3671349 ID=Msa1135890-mRNA-1:cds;Parent=Msa1135890-mRNA-1
chr7_4 CDS 3671547 3671640 3671547 ID=Msa1135890-mRNA-1:cds;Parent=Msa1135890-mRNA-1
chr7_4 three_prime_UTR 3671641 3671954 3671641 ID=Msa1135890-mRNA-1:three_prime_utr;Parent=Msa1135890-mRNA-1
Gene Sequence

>Msa1135890

ATGGTTCAGAGACTCACATACCGTAGGAGACACAGCTATGCCACCAAATCCAACCAGCATCGTGTTGTTAAGACACCTGGTGGAAAGTTGGTTTATCAGACAACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCCGCACTGTTAACAGGGCTTATGGAGGTGTTTTATCCGGAGGAGCAGTTAGGGAAAGGATTATCCGTGCTTTCCTTGTTGAAGAGCAAAAAATAGTCAAGAAAGTTTTGAAGATCCAGAAAACAAAAGAAAAGCAAGCAGCTAAGAGTTAA

Protein sequence

>Msa1135890

MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS*