AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426170 MtrunA17_Chr3g0128061 93.252 326 11 1 1 315 1 326 0.0 623
Msa0426170 MtrunA17_Chr1g0194151 52.812 320 137 4 10 315 14 333 4.79e-109 320
Msa0426170 MtrunA17_Chr1g0194271 51.376 327 138 5 10 315 14 340 8.22e-105 310
Msa0426170 MtrunA17_Chr1g0164891 53.465 303 127 4 27 315 90 392 2.53e-103 308
Msa0426170 MtrunA17_Chr4g0024121 44.795 317 161 3 12 315 11 326 4.34e-84 256
Msa0426170 MtrunA17_Chr2g0322861 46.562 320 149 7 12 315 73 386 8.25e-84 258
Msa0426170 MtrunA17_Chr7g0268501 44.136 324 163 6 5 315 2 320 2.88e-81 249
Msa0426170 MtrunA17_Chr7g0268521 44.136 324 163 6 5 315 2 320 2.88e-81 249
Msa0426170 MtrunA17_Chr1g0204011 44.136 324 164 6 3 315 5 322 8.48e-81 248
Msa0426170 MtrunA17_Chr8g0371381 45.277 307 148 6 21 315 21 319 3.71e-79 243
Msa0426170 MtrunA17_Chr5g0405991 44.127 315 156 6 13 315 10 316 1.34e-78 242
Msa0426170 MtrunA17_Chr7g0254201 44.262 305 151 5 22 315 16 312 3.92e-78 241
Msa0426170 MtrunA17_Chr2g0320061 41.590 327 167 5 1 315 4 318 4.84e-78 241
Msa0426170 MtrunA17_Chr8g0372601 44.551 312 160 3 16 315 20 330 4.96e-78 241
Msa0426170 MtrunA17_Chr5g0401431 42.320 319 168 6 11 314 11 328 5.08e-77 238
Msa0426170 MtrunA17_Chr7g0258811 41.411 326 170 5 8 316 51 372 1.17e-76 239
Msa0426170 MtrunA17_Chr2g0320051 40.979 327 169 5 1 315 4 318 2.72e-76 236
Msa0426170 MtrunA17_Chr1g0188431 41.379 319 164 6 8 315 21 327 2.56e-75 234
Msa0426170 MtrunA17_Chr2g0320071 40.881 318 165 4 9 315 12 317 4.71e-75 233
Msa0426170 MtrunA17_Chr5g0404721 44.966 298 151 3 30 315 34 330 1.59e-74 232
Msa0426170 MtrunA17_Chr2g0320031 40.062 322 170 5 6 315 9 319 1.75e-74 231
Msa0426170 MtrunA17_Chr2g0320091 39.623 318 170 3 9 315 12 318 6.30e-74 230
Msa0426170 MtrunA17_Chr6g0477071 40.256 313 164 6 14 315 42 342 7.49e-74 231
Msa0426170 MtrunA17_Chr4g0013201 41.447 304 159 3 23 315 43 338 2.46e-73 229
Msa0426170 MtrunA17_Chr1g0157051 40.190 316 172 5 10 314 8 317 2.77e-73 228
Msa0426170 MtrunA17_Chr7g0254231 43.522 301 148 5 26 315 22 311 2.81e-73 228
Msa0426170 MtrunA17_Chr5g0402581 41.486 323 173 5 7 315 6 326 4.77e-73 228
Msa0426170 MtrunA17_Chr2g0320101 40.252 318 167 4 9 315 12 317 2.22e-72 226
Msa0426170 MtrunA17_Chr1g0175561 40.000 320 177 4 11 316 9 327 3.01e-72 226
Msa0426170 MtrunA17_Chr2g0279041 42.683 328 160 9 8 315 6 325 3.81e-72 226
Msa0426170 MtrunA17_Chr7g0244461 40.063 317 170 4 10 315 5 312 4.89e-72 225
Msa0426170 MtrunA17_Chr5g0402571 40.557 323 176 5 7 315 6 326 1.22e-71 224
Msa0426170 MtrunA17_Chr3g0129051 40.317 315 166 5 11 312 14 319 1.52e-71 224
Msa0426170 MtrunA17_Chr4g0053871 40.881 318 168 7 11 314 12 323 1.94e-71 224
Msa0426170 MtrunA17_Chr4g0063671 40.979 327 167 7 5 315 4 320 2.37e-70 221
Msa0426170 MtrunA17_Chr2g0292271 38.855 332 186 5 1 316 1 331 3.84e-70 221
Msa0426170 MtrunA17_Chr2g0291751 40.717 307 168 3 22 315 25 330 7.28e-70 221
Msa0426170 MtrunA17_Chr1g0213061 39.752 322 171 6 8 315 9 321 1.02e-69 219
Msa0426170 MtrunA17_Chr2g0292211 39.812 319 178 3 10 315 24 341 1.04e-69 221
Msa0426170 MtrunA17_Chr2g0292261 38.855 332 186 4 1 316 1 331 1.74e-69 220
Msa0426170 MtrunA17_Chr5g0438021 40.506 316 167 4 13 315 18 325 2.00e-69 219
Msa0426170 MtrunA17_Chr2g0292241 39.623 318 178 3 11 315 14 330 3.70e-69 219
Msa0426170 MtrunA17_Chr4g0072091 42.053 302 155 7 25 311 23 319 3.81e-69 218
Msa0426170 MtrunA17_Chr5g0432441 40.432 324 172 4 6 315 10 326 9.05e-69 217
Msa0426170 MtrunA17_Chr2g0292111 39.441 322 179 4 9 315 10 330 9.26e-69 218
Msa0426170 MtrunA17_Chr3g0129061 40.000 325 173 5 1 312 4 319 9.68e-69 217
Msa0426170 MtrunA17_Chr7g0244451 39.557 316 171 4 11 315 10 316 1.41e-68 216
Msa0426170 MtrunA17_Chr4g0043391 39.077 325 177 5 5 315 7 324 1.53e-68 216
Msa0426170 MtrunA17_Chr4g0038151 37.963 324 182 3 5 315 4 321 2.77e-68 216
Msa0426170 MtrunA17_Chr4g0038171 39.385 325 176 5 5 315 4 321 4.31e-68 215
Msa0426170 MtrunA17_Chr1g0148021 38.580 324 183 6 6 315 7 328 7.22e-68 215
Msa0426170 MtrunA17_Chr2g0292181 38.365 318 182 3 11 315 23 339 1.93e-67 215
Msa0426170 MtrunA17_Chr7g0225221 38.110 328 178 8 4 315 2 320 3.54e-67 213
Msa0426170 MtrunA17_Chr4g0013191 40.196 306 161 5 24 315 43 340 8.03e-67 213
Msa0426170 MtrunA17_Chr2g0292151 39.441 322 179 5 9 315 10 330 1.13e-66 213
Msa0426170 MtrunA17_Chr2g0292091 37.231 325 190 3 5 316 3 326 1.88e-66 212
Msa0426170 MtrunA17_Chr5g0432351 38.532 327 176 7 5 315 4 321 3.03e-66 211
Msa0426170 MtrunA17_Chr3g0107881 38.580 324 175 6 8 315 9 324 3.15e-66 211
Msa0426170 MtrunA17_Chr4g0068621 40.984 305 163 5 24 315 36 336 4.49e-66 210
Msa0426170 MtrunA17_Chr4g0013721 39.869 306 169 4 21 315 95 396 5.10e-66 213
Msa0426170 MtrunA17_Chr4g0038161 38.050 318 178 3 11 315 9 320 5.98e-66 209
Msa0426170 MtrunA17_Chr1g0155611 40.803 299 163 3 30 315 50 347 2.85e-65 209
Msa0426170 MtrunA17_Chr5g0432341 37.920 327 178 7 5 315 4 321 3.14e-65 208
Msa0426170 MtrunA17_Chr2g0292101 38.558 319 182 3 11 316 10 327 3.85e-65 208
Msa0426170 MtrunA17_Chr7g0224371 39.262 298 161 3 30 316 35 323 4.44e-65 207
Msa0426170 MtrunA17_Chr4g0070951 39.198 324 177 5 8 315 10 329 4.71e-65 207
Msa0426170 MtrunA17_Chr4g0013171 38.608 316 173 5 13 315 14 321 7.75e-65 207
Msa0426170 MtrunA17_Chr2g0299691 40.062 322 170 5 14 315 40 358 8.35e-65 208
Msa0426170 MtrunA17_Chr3g0106921 38.390 323 177 5 7 315 6 320 1.78e-64 206
Msa0426170 MtrunA17_Chr2g0292251 38.961 308 174 3 21 315 23 329 2.12e-64 207
Msa0426170 MtrunA17_Chr3g0129041 38.532 327 181 4 1 315 4 322 3.38e-64 205
Msa0426170 MtrunA17_Chr6g0460711 37.539 317 180 5 10 315 5 314 4.82e-64 205
Msa0426170 MtrunA17_Chr3g0114451 39.344 305 166 3 22 315 22 318 6.13e-64 204
Msa0426170 MtrunA17_Chr4g0046131 39.404 302 168 4 25 311 41 342 2.98e-63 203
Msa0426170 MtrunA17_Chr5g0432331 38.961 308 163 7 24 315 54 352 5.41e-63 203
Msa0426170 MtrunA17_Chr4g0076211 39.000 300 162 6 28 315 43 333 2.53e-62 201
Msa0426170 MtrunA17_Chr4g0013181 38.796 299 162 5 30 315 63 353 3.03e-62 201
Msa0426170 MtrunA17_Chr5g0400331 40.264 303 163 5 30 315 30 331 8.18e-62 199
Msa0426170 MtrunA17_Chr1g0197411 37.963 324 187 4 6 315 7 330 1.96e-61 198
Msa0426170 MtrunA17_Chr2g0279061 44.828 261 130 6 61 315 14 266 2.57e-61 196
Msa0426170 MtrunA17_Chr3g0106901 40.125 319 169 4 8 315 16 323 2.78e-61 197
Msa0426170 MtrunA17_Chr2g0292291 37.013 308 181 2 21 315 25 332 3.73e-61 198
Msa0426170 MtrunA17_Chr3g0136751 36.890 328 188 6 1 315 1 322 6.04e-60 194
Msa0426170 MtrunA17_Chr4g0013821 36.184 304 179 4 24 316 26 325 8.93e-60 194
Msa0426170 MtrunA17_Chr8g0364291 38.679 318 183 2 10 315 7 324 1.12e-59 194
Msa0426170 MtrunA17_Chr5g0413051 39.088 307 170 6 25 315 72 377 1.52e-59 195
Msa0426170 MtrunA17_Chr6g0467121 39.604 303 159 6 26 316 74 364 1.61e-59 195
Msa0426170 MtrunA17_Chr6g0467161 37.821 312 164 7 22 315 37 336 1.00e-58 191
Msa0426170 MtrunA17_Chr2g0296621 38.158 304 164 8 26 316 50 342 1.16e-58 191
Msa0426170 MtrunA17_Chr2g0329641 37.908 306 170 5 25 315 35 335 1.31e-58 191
Msa0426170 MtrunA17_Chr6g0467251 36.455 299 167 6 26 311 36 324 4.87e-54 180
Msa0426170 MtrunA17_Chr5g0421411 39.163 263 148 5 61 315 27 285 5.36e-54 178
Msa0426170 MtrunA17_Chr1g0181511 34.967 306 180 4 24 316 25 324 8.59e-54 178
Msa0426170 MtrunA17_Chr6g0451571 36.364 308 179 4 22 315 30 334 1.15e-53 178
Msa0426170 MtrunA17_Chr1g0181431 34.641 306 181 4 24 316 25 324 2.85e-53 177
Msa0426170 MtrunA17_Chr2g0278671 38.141 312 167 8 22 315 20 323 2.94e-53 177
Msa0426170 MtrunA17_Chr1g0181481 34.314 306 182 4 24 316 25 324 5.04e-52 174
Msa0426170 MtrunA17_Chr2g0311251 33.133 332 181 6 24 314 9 340 7.97e-49 166
Msa0426170 MtrunA17_Chr2g0316791 32.827 329 180 5 24 311 74 402 2.90e-48 166
Msa0426170 MtrunA17_Chr4g0075241 33.113 302 189 3 25 315 28 327 1.03e-47 162
Msa0426170 MtrunA17_Chr2g0316481 33.030 330 178 6 24 311 74 402 1.20e-47 164
Msa0426170 MtrunA17_Chr2g0316831 32.727 330 179 6 24 311 110 438 6.69e-47 164
Msa0426170 MtrunA17_Chr2g0316191 32.326 331 180 6 24 311 74 403 3.34e-46 161
Msa0426170 MtrunA17_Chr4g0004591 34.416 308 154 5 26 314 77 355 1.05e-43 153
Msa0426170 MtrunA17_Chr4g0074851 31.353 303 189 4 26 315 32 328 2.47e-43 151
Msa0426170 MtrunA17_Chr2g0292281 40.566 212 111 4 107 315 17 216 5.16e-43 148
Msa0426170 MtrunA17_Chr2g0311241 30.319 376 176 8 24 315 58 431 2.24e-42 151
Msa0426170 MtrunA17_Chr5g0432401 32.615 325 153 9 6 314 11 285 5.07e-42 147
Msa0426170 MtrunA17_Chr2g0316141 31.834 289 145 8 60 315 10 279 5.54e-36 130
Msa0426170 MtrunA17_Chr2g0316181 31.834 289 145 8 60 315 10 279 5.54e-36 130
Msa0426170 MtrunA17_Chr3g0114461 37.173 191 111 3 126 315 10 192 1.76e-34 124
Msa0426170 MtrunA17_Chr2g0316811 32.759 232 127 5 24 227 48 278 1.65e-29 115
Msa0426170 MtrunA17_Chr1g0181501 33.511 188 117 3 131 316 9 190 6.14e-27 104
Msa0426170 MtrunA17_Chr7g0254181 50.000 108 50 2 74 181 19 122 1.01e-26 103
Msa0426170 MtrunA17_Chr5g0432321 40.000 125 66 3 136 260 17 132 1.82e-22 90.9
Msa0426170 MtrunA17_Chr3g0114491 45.045 111 50 1 23 122 15 125 3.74e-19 82.4
Msa0426170 MtrunA17_Chr3g0104101 34.483 145 83 5 179 315 9 149 1.34e-16 75.5
Msa0426170 MtrunA17_Chr1g0196191 55.882 68 29 1 56 123 26 92 6.92e-16 73.9
Msa0426170 MtrunA17_Chr7g0254171 34.559 136 84 3 61 194 4 136 5.16e-15 70.9
Msa0426170 MtrunA17_Chr6g0468731 60.938 64 21 2 61 124 29 88 1.06e-14 68.6
Msa0426170 MtrunA17_Chr1g0181491 34.821 112 62 2 24 125 10 120 3.91e-14 68.9
Msa0426170 MtrunA17_Chr7g0268491 45.977 87 38 2 233 315 16 97 6.51e-14 66.6
Msa0426170 MtrunA17_Chr3g0137751 26.882 279 131 11 36 294 85 310 4.77e-13 68.6
Msa0426170 MtrunA17_Chr5g0423911 48.485 66 34 0 246 311 2 67 4.38e-12 62.0
Msa0426170 MtrunA17_Chr5g0432361 36.709 79 48 1 238 314 30 108 9.66e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426170 AT1G05260.1 46.732 306 147 6 23 315 23 325 2.86e-83 254
Msa0426170 AT5G42180.1 42.769 325 166 6 1 314 1 316 6.94e-81 248
Msa0426170 AT3G21770.1 45.130 308 151 7 20 313 23 326 1.04e-80 248
Msa0426170 AT4G11290.1 43.750 320 164 6 10 315 9 326 1.37e-78 243
Msa0426170 AT2G18980.1 41.176 323 171 6 7 315 6 323 2.10e-78 242
Msa0426170 AT5G51890.1 44.136 324 163 7 4 315 5 322 2.58e-78 242
Msa0426170 AT5G06730.1 40.439 319 176 3 11 316 18 335 3.42e-76 238
Msa0426170 AT3G03670.1 42.138 318 167 4 11 315 8 321 3.46e-76 236
Msa0426170 AT4G33420.1 43.260 319 157 7 9 315 19 325 1.82e-75 234
Msa0426170 AT3G01190.1 43.385 325 163 8 4 315 5 321 6.16e-75 233
Msa0426170 AT4G33420.2 43.260 319 157 7 9 315 66 372 6.27e-75 234
Msa0426170 AT4G30170.1 41.503 306 160 6 24 315 25 325 2.33e-74 232
Msa0426170 AT2G38390.1 41.433 321 173 4 9 315 14 333 2.80e-74 232
Msa0426170 AT1G14540.1 39.938 323 168 6 8 315 4 315 1.63e-72 227
Msa0426170 AT4G08770.1 42.628 312 157 6 22 315 20 327 1.69e-72 228
Msa0426170 AT4G36430.1 39.308 318 180 3 10 315 14 330 4.79e-72 226
Msa0426170 AT2G18140.1 41.946 298 160 3 30 315 39 335 5.19e-72 226
Msa0426170 AT5G17820.1 42.222 315 160 5 12 315 10 313 2.08e-71 224
Msa0426170 AT2G38380.1 41.250 320 171 5 12 315 15 333 4.27e-71 224
Msa0426170 AT5G64120.1 41.033 329 163 8 11 315 7 328 6.97e-71 223
Msa0426170 AT2G18150.1 40.184 326 176 4 8 315 12 336 9.34e-71 223
Msa0426170 AT1G05240.1 41.776 304 159 5 26 315 26 325 1.26e-70 222
Msa0426170 AT1G05250.1 41.776 304 159 5 26 315 26 325 1.26e-70 222
Msa0426170 AT5G17820.2 41.905 315 161 5 12 315 63 366 2.50e-70 223
Msa0426170 AT4G26010.1 41.956 317 158 6 11 315 7 309 4.41e-70 220
Msa0426170 AT5G06720.1 38.245 319 183 3 11 316 17 334 4.56e-70 221
Msa0426170 AT5G66390.1 41.275 298 162 3 30 315 37 333 6.08e-70 221
Msa0426170 AT4G08780.1 41.667 312 160 6 22 315 20 327 7.61e-70 221
Msa0426170 AT4G26010.2 41.956 317 158 6 11 315 35 337 8.17e-70 221
Msa0426170 AT5G14130.1 39.198 324 182 4 4 315 10 330 8.39e-70 220
Msa0426170 AT4G37530.1 41.234 308 166 5 22 315 23 329 1.58e-69 219
Msa0426170 AT5G14130.2 39.198 324 182 4 4 315 51 371 2.67e-69 220
Msa0426170 AT5G15180.1 39.938 323 175 6 8 315 11 329 3.43e-69 219
Msa0426170 AT5G19880.1 39.130 322 179 5 10 315 9 329 6.62e-69 218
Msa0426170 AT1G44970.1 41.883 308 165 4 21 315 40 346 9.18e-69 218
Msa0426170 AT3G32980.1 40.308 325 176 5 8 315 11 334 1.15e-68 218
Msa0426170 AT1G71695.1 42.295 305 152 7 26 315 44 339 9.25e-68 216
Msa0426170 AT4G37520.1 40.850 306 166 5 24 315 25 329 1.08e-67 215
Msa0426170 AT2G41480.1 40.244 328 173 7 5 315 7 328 2.63e-67 214
Msa0426170 AT3G49110.1 39.385 325 179 5 8 315 13 336 4.07e-67 214
Msa0426170 AT4G31760.1 38.344 326 181 6 5 315 6 326 4.54e-67 213
Msa0426170 AT3G50990.1 39.130 322 180 4 9 315 21 341 5.21e-67 213
Msa0426170 AT3G49960.1 37.931 319 183 5 11 315 12 329 6.55e-67 213
Msa0426170 AT5G58390.1 40.312 320 171 4 9 315 4 316 1.02e-66 212
Msa0426170 AT5G58400.1 40.694 317 166 6 10 312 14 322 1.19e-66 212
Msa0426170 AT5G05340.1 38.235 306 168 4 19 311 23 320 1.72e-66 211
Msa0426170 AT2G39040.1 42.581 310 155 8 25 315 45 350 2.42e-66 212
Msa0426170 AT2G22420.1 40.741 297 161 4 30 315 27 319 5.66e-66 210
Msa0426170 AT1G49570.1 40.864 301 165 2 24 311 46 346 9.39e-66 210
Msa0426170 AT1G14550.1 37.805 328 184 5 1 315 1 321 1.85e-65 209
Msa0426170 AT5G67400.1 38.170 317 181 5 13 315 14 329 6.12e-65 207
Msa0426170 AT4G37520.2 40.196 306 165 6 24 315 25 326 8.19e-65 207
Msa0426170 AT3G49120.1 39.077 325 180 5 8 315 12 335 9.67e-65 208
Msa0426170 AT5G19890.1 38.318 321 176 6 10 315 14 327 7.56e-63 202
Msa0426170 AT5G39580.1 40.439 319 168 10 10 315 10 319 1.48e-62 201
Msa0426170 AT5G22410.1 38.080 323 176 9 6 312 8 322 1.88e-62 201
Msa0426170 AT2G34060.1 39.414 307 169 5 23 313 39 344 2.59e-62 201
Msa0426170 AT4G33870.1 35.736 333 168 5 24 311 66 397 4.35e-62 202
Msa0426170 AT2G35380.1 39.803 304 165 5 29 315 33 335 1.96e-61 199
Msa0426170 AT2G24800.1 37.705 305 173 4 24 315 29 329 1.77e-60 196
Msa0426170 AT4G37530.2 43.411 258 131 5 24 267 25 281 5.30e-60 193
Msa0426170 AT1G34510.1 39.498 319 167 6 9 315 5 309 1.41e-59 193
Msa0426170 AT5G64110.1 39.144 327 173 8 8 315 11 330 1.67e-59 194
Msa0426170 AT5G64100.1 40.594 303 157 7 27 315 38 331 4.17e-59 192
Msa0426170 AT4G25980.1 37.338 308 172 7 24 315 24 326 1.07e-56 186
Msa0426170 AT4G16270.1 38.079 302 172 4 26 315 50 348 3.08e-56 186
Msa0426170 AT1G77100.1 36.637 333 173 10 6 315 2 319 3.18e-56 185
Msa0426170 AT5G24070.1 37.333 300 167 6 32 316 43 336 5.56e-55 182
Msa0426170 AT2G43480.1 37.584 298 163 6 34 315 45 335 1.01e-54 181
Msa0426170 AT5G40150.1 37.621 311 175 4 18 315 24 328 2.32e-54 180
Msa0426170 AT1G68850.1 35.806 310 175 7 26 315 30 335 9.47e-54 179
Msa0426170 AT3G28200.1 37.338 308 173 4 21 315 16 316 4.75e-53 177
Msa0426170 AT1G30870.1 37.667 300 164 7 26 311 51 341 1.64e-52 176
Msa0426170 AT4G17690.1 36.120 299 172 4 30 315 30 322 8.29e-52 174
Msa0426170 AT5G47000.1 36.304 303 175 4 26 315 33 330 7.72e-50 169
Msa0426170 AT2G35380.2 39.431 246 142 4 76 315 3 247 1.04e-48 163
Msa0426170 AT2G37130.1 33.443 305 183 5 25 315 29 327 1.33e-47 163
Msa0426170 AT2G37130.2 33.113 302 182 5 28 315 1 296 3.76e-46 158
Msa0426170 AT1G24110.1 35.798 257 161 3 61 315 68 322 1.75e-45 157
Msa0426170 AT4G21960.1 31.402 328 198 5 9 315 6 327 2.49e-45 157
Msa0426170 AT3G17070.1 33.981 309 178 6 26 315 38 339 1.92e-44 155
Msa0426170 AT3G17070.2 35.985 264 154 5 60 315 20 276 2.66e-42 147
Msa0426170 AT5G39580.2 42.708 192 91 7 10 189 10 194 4.19e-36 130
Msa0426170 AT2G24800.2 39.881 168 86 3 24 180 29 192 3.51e-31 117
Msa0426170 AT4G25980.2 39.412 170 88 4 24 182 69 234 5.86e-30 115
Msa0426170 AT3G42570.1 35.772 123 68 4 67 182 31 149 1.99e-12 64.3
Msa0426170 AT4G32320.1 34.839 155 84 6 41 185 100 247 9.55e-12 65.5
Msa0426170 AT4G35970.2 34.459 148 81 5 77 222 62 195 7.47e-11 61.6

Find 78 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTGAGACTTGGTTTAT+TGG 0.121750 3_2:+76548734 None:intergenic
CTCATTCTCAGCTGGAGGTT+GGG 0.311339 3_2:-76549145 Msa0426170:CDS
AATTTGTTTGACCATAGATA+TGG 0.313045 3_2:+76547963 None:intergenic
TTCATGCAGGCTGGAGGGCT+TGG 0.319166 3_2:-76548526 Msa0426170:intron
CCATTGGAACCACCAAGTTT+TGG 0.325196 3_2:+76548120 None:intergenic
GTCTTTCTCTGCAGTGTTTG+AGG 0.345242 3_2:+76548764 None:intergenic
TATCCTACATCTGCAGTTCC+AGG 0.345777 3_2:+76548086 None:intergenic
TCTGCAGTTCCAGGGCTAGA+AGG 0.363484 3_2:+76548095 None:intergenic
CTGAGACTTGGTTTATTGGC+TGG 0.366197 3_2:+76548738 None:intergenic
CTTCAATAGTGCAGCATATG+AGG 0.366457 3_2:+76548169 None:intergenic
TTCCCATCTCTTCTTCCTGC+AGG 0.381304 3_2:+76548493 None:intergenic
TCTTTCTCTGCAGTGTTTGA+GGG 0.401235 3_2:+76548765 None:intergenic
GATGAAATGGTCACTCTCTC+TGG 0.402413 3_2:-76548373 Msa0426170:intron
GCTCATTCTCAGCTGGAGGT+TGG 0.417129 3_2:-76549146 Msa0426170:CDS
ACAAGGCCAGCAGCAATTCC+AGG 0.419294 3_2:+76549050 None:intergenic
ATGCTAGGAATCCATATCTA+TGG 0.420617 3_2:-76547974 Msa0426170:CDS
CTCAGCCATGCCACATGAAT+AGG 0.436631 3_2:+76549115 None:intergenic
GAGAGATTAGGACAAATTGC+AGG 0.439194 3_2:-76547887 Msa0426170:CDS
CAGGTAATGCTGGAGAGATT+AGG 0.441022 3_2:-76547899 Msa0426170:CDS
AGGATACTATAATGATATCT+TGG 0.455594 3_2:-76548069 Msa0426170:CDS
AAAAGTTTCAATAAGAATCC+TGG 0.459318 3_2:-76549068 Msa0426170:CDS
AATGATATCTTGGCAAATAG+AGG 0.465257 3_2:-76548059 Msa0426170:CDS
GGGGTTAACACAAGATGAAA+TGG 0.467055 3_2:-76548386 Msa0426170:CDS
CCAAAACTTGGTGGTTCCAA+TGG 0.483014 3_2:-76548120 Msa0426170:CDS
TGCAGATGCAATGGTGAAGA+TGG 0.483491 3_2:-76547940 Msa0426170:CDS
CTGCAGTTCCAGGGCTAGAA+GGG 0.488749 3_2:+76548096 None:intergenic
CCTTATTTCATGCAGGCTGG+AGG 0.492008 3_2:-76548532 Msa0426170:intron
TATGCAGGCGCGCACACCAT+TGG 0.492747 3_2:-76548269 Msa0426170:intron
CAGAAGTGCTCATTCTCAGC+TGG 0.493768 3_2:-76549153 Msa0426170:CDS
AGGGATCTAAACTTGGATCC+TGG 0.499621 3_2:+76548189 None:intergenic
CACTCAACTCTTTGCAAGGA+AGG 0.501674 3_2:-76548407 Msa0426170:CDS
TTATACCTATTCATGTGGCA+TGG 0.502277 3_2:-76549120 Msa0426170:CDS
CTTCAGCAGCACTTCAATCC+AGG 0.504752 3_2:-76548207 Msa0426170:CDS
CTTATTTCATGCAGGCTGGA+GGG 0.511740 3_2:-76548531 Msa0426170:intron
ACTCAACTCTTTGCAAGGAA+GGG 0.511829 3_2:-76548406 Msa0426170:CDS
CATAGTTGCATTTGCAGCAA+GGG 0.512485 3_2:-76548643 Msa0426170:CDS
ACAAATTGCAGGGTGGTCAA+TGG 0.512864 3_2:-76547876 Msa0426170:CDS
GCCAATAAACCAAGTCTCAG+AGG 0.515910 3_2:-76548735 Msa0426170:CDS
GTTCCTGCAGGAAGAAGAGA+TGG 0.516777 3_2:-76548496 Msa0426170:CDS
ACTTCAAACCCTCTGAGACT+TGG 0.516939 3_2:+76548726 None:intergenic
AAGAATCCTGGAATTGCTGC+TGG 0.519387 3_2:-76549056 Msa0426170:CDS
CTCAACTCTTTGCAAGGAAG+GGG 0.520802 3_2:-76548405 Msa0426170:CDS
CCAATGGACCCTTCTAGCCC+TGG 0.523200 3_2:-76548104 Msa0426170:CDS
GAAAAGTTCATCAAAATGCT+AGG 0.531508 3_2:-76547989 Msa0426170:CDS
CCAGGGCTAGAAGGGTCCAT+TGG 0.535741 3_2:+76548104 None:intergenic
GGACAGATCAGTGTCTTGAC+AGG 0.536846 3_2:-76547918 Msa0426170:CDS
TTGCAAAGAGTTGAGTGAGT+TGG 0.537720 3_2:+76548413 None:intergenic
AGCAAGGGATAGTGTGGAGT+TGG 0.539211 3_2:-76548628 Msa0426170:intron
GCATATGAGGGATCTAAACT+TGG 0.540192 3_2:+76548182 None:intergenic
AGTTGGTTAACATCGAAAGT+TGG 0.541904 3_2:+76548430 None:intergenic
AGTGTCTTGACAGGTAATGC+TGG 0.543673 3_2:-76547909 Msa0426170:CDS
CAGACTCTCTTAACTAACAC+TGG 0.545200 3_2:-76548020 Msa0426170:CDS
AGGAAACACAAACCAAAACT+TGG 0.546354 3_2:-76548132 Msa0426170:CDS
CTTGGCTATGATGTTCCTGC+AGG 0.548718 3_2:-76548508 Msa0426170:CDS
TGAAGTTATTGATAATGCAA+AGG 0.550563 3_2:-76548709 Msa0426170:CDS
AAACAAATTTGCAGATGCAA+TGG 0.561559 3_2:-76547949 Msa0426170:CDS
AACTCACTCAACTCTTTGCA+AGG 0.568692 3_2:-76548411 Msa0426170:CDS
ATTGTAGGGGTGTGACGCAT+CGG 0.571016 3_2:-76548805 Msa0426170:intron
ATCCTACATCTGCAGTTCCA+GGG 0.571284 3_2:+76548087 None:intergenic
TTCAATAGTGCAGCATATGA+GGG 0.574062 3_2:+76548170 None:intergenic
ACATAGTTGCATTTGCAGCA+AGG 0.583439 3_2:-76548644 Msa0426170:CDS
TGGTTAACATCGAAAGTTGG+AGG 0.590208 3_2:+76548433 None:intergenic
CATATGCTGCACTATTGAAG+AGG 0.596880 3_2:-76548166 Msa0426170:CDS
AAACACAAACCAAAACTTGG+TGG 0.603250 3_2:-76548129 Msa0426170:CDS
GTATAATCTCTTGCTGAAAG+CGG 0.607977 3_2:+76548232 None:intergenic
AGCCCTGGAACTGCAGATGT+AGG 0.621715 3_2:-76548089 Msa0426170:CDS
TGAGTTCATTGTAAAAGATG+AGG 0.626057 3_2:-76549096 Msa0426170:CDS
AAGTGCTCATTCTCAGCTGG+AGG 0.626276 3_2:-76549150 Msa0426170:CDS
TTAACATCGAAAGTTGGAGG+AGG 0.628644 3_2:+76548436 None:intergenic
GCAGATGCAATGGTGAAGAT+GGG 0.629250 3_2:-76547939 Msa0426170:CDS
CCAATAAACCAAGTCTCAGA+GGG 0.630840 3_2:-76548734 Msa0426170:CDS
TTGAAGAGGCAATGTCCACA+AGG 0.631527 3_2:-76548152 Msa0426170:CDS
ATTTGCAGCAAGGGATAGTG+TGG 0.650496 3_2:-76548634 Msa0426170:CDS
AAACTCGAAGAAGAATGCAA+AGG 0.664647 3_2:-76548684 Msa0426170:CDS
AGAGATTAGGACAAATTGCA+GGG 0.665767 3_2:-76547886 Msa0426170:CDS
GGAGCAATGAGAGCGACCAA+TGG 0.668056 3_2:+76548253 None:intergenic
TTCCTGCAGGAAGAAGAGAT+GGG 0.669526 3_2:-76548495 Msa0426170:CDS
GATTAGGACAAATTGCAGGG+TGG 0.768369 3_2:-76547883 Msa0426170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCATAATTAAGTTTTTT+CGG + chr3_2:76547881-76547900 None:intergenic 15.0%
!! TTTAGTAATTTCCAAAATAA+CGG + chr3_2:76548202-76548221 None:intergenic 15.0%
!!! ATTGCATAATTAAGTTTTTT+CGG + chr3_2:76547881-76547900 None:intergenic 15.0%
!! TTTAGTAATTTCCAAAATAA+CGG + chr3_2:76548202-76548221 None:intergenic 15.0%
!!! ATCATATAATTCCGTTATTT+TGG - chr3_2:76548188-76548207 Msa0426170:CDS 20.0%
!! ATGAAATAAGGAATGATTTA+GGG + chr3_2:76548540-76548559 None:intergenic 20.0%
!! TTATAGCTTAAATTTGAATG+AGG - chr3_2:76548775-76548794 Msa0426170:CDS 20.0%
!!! ATCATATAATTCCGTTATTT+TGG - chr3_2:76548188-76548207 Msa0426170:CDS 20.0%
!! ATGAAATAAGGAATGATTTA+GGG + chr3_2:76548540-76548559 None:intergenic 20.0%
!! TTATAGCTTAAATTTGAATG+AGG - chr3_2:76548775-76548794 Msa0426170:CDS 20.0%
! AAAAGTTTCAATAAGAATCC+TGG - chr3_2:76548013-76548032 Msa0426170:CDS 25.0%
!!! TGAAGTTATTGATAATGCAA+AGG - chr3_2:76548372-76548391 Msa0426170:intron 25.0%
! CATGAAATAAGGAATGATTT+AGG + chr3_2:76548541-76548560 None:intergenic 25.0%
! AGGATACTATAATGATATCT+TGG - chr3_2:76549012-76549031 Msa0426170:intron 25.0%
!! AATTTGTTTGACCATAGATA+TGG + chr3_2:76549121-76549140 None:intergenic 25.0%
! AAAAGTTTCAATAAGAATCC+TGG - chr3_2:76548013-76548032 Msa0426170:CDS 25.0%
!!! TGAAGTTATTGATAATGCAA+AGG - chr3_2:76548372-76548391 Msa0426170:intron 25.0%
! CATGAAATAAGGAATGATTT+AGG + chr3_2:76548541-76548560 None:intergenic 25.0%
! AGGATACTATAATGATATCT+TGG - chr3_2:76549012-76549031 Msa0426170:intron 25.0%
!! AATTTGTTTGACCATAGATA+TGG + chr3_2:76549121-76549140 None:intergenic 25.0%
TGAGTTCATTGTAAAAGATG+AGG - chr3_2:76547985-76548004 Msa0426170:CDS 30.0%
CATGAAAATGCATTCTTACA+AGG + chr3_2:76548051-76548070 None:intergenic 30.0%
TAACAACGCAGTTAAGTTAA+TGG + chr3_2:76548256-76548275 None:intergenic 30.0%
TTAACTGCGTTGTTAATTGT+AGG - chr3_2:76548261-76548280 Msa0426170:CDS 30.0%
TAACTGCGTTGTTAATTGTA+GGG - chr3_2:76548262-76548281 Msa0426170:CDS 30.0%
TTTGTGCTAGAAACATTTGA+AGG - chr3_2:76548493-76548512 Msa0426170:CDS 30.0%
! AATCATTCCTTATTTCATGC+AGG - chr3_2:76548542-76548561 Msa0426170:intron 30.0%
AATGATATCTTGGCAAATAG+AGG - chr3_2:76549022-76549041 Msa0426170:intron 30.0%
!! AGCATTTTGATGAACTTTTC+TGG + chr3_2:76549092-76549111 None:intergenic 30.0%
GAAAAGTTCATCAAAATGCT+AGG - chr3_2:76549092-76549111 Msa0426170:CDS 30.0%
AAACAAATTTGCAGATGCAA+TGG - chr3_2:76549132-76549151 Msa0426170:CDS 30.0%
TGAGTTCATTGTAAAAGATG+AGG - chr3_2:76547985-76548004 Msa0426170:CDS 30.0%
CATGAAAATGCATTCTTACA+AGG + chr3_2:76548051-76548070 None:intergenic 30.0%
TAACAACGCAGTTAAGTTAA+TGG + chr3_2:76548256-76548275 None:intergenic 30.0%
TTAACTGCGTTGTTAATTGT+AGG - chr3_2:76548261-76548280 Msa0426170:CDS 30.0%
TAACTGCGTTGTTAATTGTA+GGG - chr3_2:76548262-76548281 Msa0426170:CDS 30.0%
TTTGTGCTAGAAACATTTGA+AGG - chr3_2:76548493-76548512 Msa0426170:CDS 30.0%
! AATCATTCCTTATTTCATGC+AGG - chr3_2:76548542-76548561 Msa0426170:intron 30.0%
AATGATATCTTGGCAAATAG+AGG - chr3_2:76549022-76549041 Msa0426170:intron 30.0%
!! AGCATTTTGATGAACTTTTC+TGG + chr3_2:76549092-76549111 None:intergenic 30.0%
GAAAAGTTCATCAAAATGCT+AGG - chr3_2:76549092-76549111 Msa0426170:CDS 30.0%
AAACAAATTTGCAGATGCAA+TGG - chr3_2:76549132-76549151 Msa0426170:CDS 30.0%
!! GGGTTTTATACCTATTCATG+TGG - chr3_2:76547956-76547975 Msa0426170:CDS 35.0%
TTATACCTATTCATGTGGCA+TGG - chr3_2:76547961-76547980 Msa0426170:CDS 35.0%
GTGCAACATTTCGTTACAAA+TGG + chr3_2:76548106-76548125 None:intergenic 35.0%
AACTGCGTTGTTAATTGTAG+GGG - chr3_2:76548263-76548282 Msa0426170:CDS 35.0%
AAACTCGAAGAAGAATGCAA+AGG - chr3_2:76548397-76548416 Msa0426170:CDS 35.0%
AGTTGGTTAACATCGAAAGT+TGG + chr3_2:76548654-76548673 None:intergenic 35.0%
!! GCATGTATTTTTGTGTATGC+AGG - chr3_2:76548797-76548816 Msa0426170:CDS 35.0%
GTATAATCTCTTGCTGAAAG+CGG + chr3_2:76548852-76548871 None:intergenic 35.0%
TTCAATAGTGCAGCATATGA+GGG + chr3_2:76548914-76548933 None:intergenic 35.0%
!!! TTTTGGTTTGTGTTTCCTTG+TGG + chr3_2:76548947-76548966 None:intergenic 35.0%
AGGAAACACAAACCAAAACT+TGG - chr3_2:76548949-76548968 Msa0426170:intron 35.0%
AAACACAAACCAAAACTTGG+TGG - chr3_2:76548952-76548971 Msa0426170:intron 35.0%
ATGCTAGGAATCCATATCTA+TGG - chr3_2:76549107-76549126 Msa0426170:CDS 35.0%
AGAGATTAGGACAAATTGCA+GGG - chr3_2:76549195-76549214 Msa0426170:CDS 35.0%
!! GGGTTTTATACCTATTCATG+TGG - chr3_2:76547956-76547975 Msa0426170:CDS 35.0%
TTATACCTATTCATGTGGCA+TGG - chr3_2:76547961-76547980 Msa0426170:CDS 35.0%
GTGCAACATTTCGTTACAAA+TGG + chr3_2:76548106-76548125 None:intergenic 35.0%
AACTGCGTTGTTAATTGTAG+GGG - chr3_2:76548263-76548282 Msa0426170:CDS 35.0%
AAACTCGAAGAAGAATGCAA+AGG - chr3_2:76548397-76548416 Msa0426170:CDS 35.0%
AGTTGGTTAACATCGAAAGT+TGG + chr3_2:76548654-76548673 None:intergenic 35.0%
!! GCATGTATTTTTGTGTATGC+AGG - chr3_2:76548797-76548816 Msa0426170:CDS 35.0%
GTATAATCTCTTGCTGAAAG+CGG + chr3_2:76548852-76548871 None:intergenic 35.0%
TTCAATAGTGCAGCATATGA+GGG + chr3_2:76548914-76548933 None:intergenic 35.0%
!!! TTTTGGTTTGTGTTTCCTTG+TGG + chr3_2:76548947-76548966 None:intergenic 35.0%
AGGAAACACAAACCAAAACT+TGG - chr3_2:76548949-76548968 Msa0426170:intron 35.0%
AAACACAAACCAAAACTTGG+TGG - chr3_2:76548952-76548971 Msa0426170:intron 35.0%
ATGCTAGGAATCCATATCTA+TGG - chr3_2:76549107-76549126 Msa0426170:CDS 35.0%
AGAGATTAGGACAAATTGCA+GGG - chr3_2:76549195-76549214 Msa0426170:CDS 35.0%
! ACTACTAAGCATTGTGTGCA+AGG + chr3_2:76548128-76548147 None:intergenic 40.0%
TCTTTCTCTGCAGTGTTTGA+GGG + chr3_2:76548319-76548338 None:intergenic 40.0%
CCAATAAACCAAGTCTCAGA+GGG - chr3_2:76548347-76548366 Msa0426170:intron 40.0%
ACATAGTTGCATTTGCAGCA+AGG - chr3_2:76548437-76548456 Msa0426170:CDS 40.0%
CATAGTTGCATTTGCAGCAA+GGG - chr3_2:76548438-76548457 Msa0426170:CDS 40.0%
! ATTCCTTATTTCATGCAGGC+TGG - chr3_2:76548546-76548565 Msa0426170:intron 40.0%
TTAACATCGAAAGTTGGAGG+AGG + chr3_2:76548648-76548667 None:intergenic 40.0%
TGGTTAACATCGAAAGTTGG+AGG + chr3_2:76548651-76548670 None:intergenic 40.0%
TTGCAAAGAGTTGAGTGAGT+TGG + chr3_2:76548671-76548690 None:intergenic 40.0%
AACTCACTCAACTCTTTGCA+AGG - chr3_2:76548670-76548689 Msa0426170:CDS 40.0%
ACTCAACTCTTTGCAAGGAA+GGG - chr3_2:76548675-76548694 Msa0426170:CDS 40.0%
GGGGTTAACACAAGATGAAA+TGG - chr3_2:76548695-76548714 Msa0426170:CDS 40.0%
GCATATGAGGGATCTAAACT+TGG + chr3_2:76548902-76548921 None:intergenic 40.0%
CTTCAATAGTGCAGCATATG+AGG + chr3_2:76548915-76548934 None:intergenic 40.0%
CATATGCTGCACTATTGAAG+AGG - chr3_2:76548915-76548934 Msa0426170:intron 40.0%
CAGACTCTCTTAACTAACAC+TGG - chr3_2:76549061-76549080 Msa0426170:CDS 40.0%
GAGAGATTAGGACAAATTGC+AGG - chr3_2:76549194-76549213 Msa0426170:CDS 40.0%
! ACTACTAAGCATTGTGTGCA+AGG + chr3_2:76548128-76548147 None:intergenic 40.0%
TCTTTCTCTGCAGTGTTTGA+GGG + chr3_2:76548319-76548338 None:intergenic 40.0%
CCAATAAACCAAGTCTCAGA+GGG - chr3_2:76548347-76548366 Msa0426170:intron 40.0%
ACATAGTTGCATTTGCAGCA+AGG - chr3_2:76548437-76548456 Msa0426170:CDS 40.0%
CATAGTTGCATTTGCAGCAA+GGG - chr3_2:76548438-76548457 Msa0426170:CDS 40.0%
! ATTCCTTATTTCATGCAGGC+TGG - chr3_2:76548546-76548565 Msa0426170:intron 40.0%
TTAACATCGAAAGTTGGAGG+AGG + chr3_2:76548648-76548667 None:intergenic 40.0%
TGGTTAACATCGAAAGTTGG+AGG + chr3_2:76548651-76548670 None:intergenic 40.0%
TTGCAAAGAGTTGAGTGAGT+TGG + chr3_2:76548671-76548690 None:intergenic 40.0%
AACTCACTCAACTCTTTGCA+AGG - chr3_2:76548670-76548689 Msa0426170:CDS 40.0%
ACTCAACTCTTTGCAAGGAA+GGG - chr3_2:76548675-76548694 Msa0426170:CDS 40.0%
GGGGTTAACACAAGATGAAA+TGG - chr3_2:76548695-76548714 Msa0426170:CDS 40.0%
GCATATGAGGGATCTAAACT+TGG + chr3_2:76548902-76548921 None:intergenic 40.0%
CTTCAATAGTGCAGCATATG+AGG + chr3_2:76548915-76548934 None:intergenic 40.0%
CATATGCTGCACTATTGAAG+AGG - chr3_2:76548915-76548934 Msa0426170:intron 40.0%
CAGACTCTCTTAACTAACAC+TGG - chr3_2:76549061-76549080 Msa0426170:CDS 40.0%
GAGAGATTAGGACAAATTGC+AGG - chr3_2:76549194-76549213 Msa0426170:CDS 40.0%
AAGAATCCTGGAATTGCTGC+TGG - chr3_2:76548025-76548044 Msa0426170:CDS 45.0%
GTCTTTCTCTGCAGTGTTTG+AGG + chr3_2:76548320-76548339 None:intergenic 45.0%
! CTGAGACTTGGTTTATTGGC+TGG + chr3_2:76548346-76548365 None:intergenic 45.0%
GCCAATAAACCAAGTCTCAG+AGG - chr3_2:76548346-76548365 Msa0426170:intron 45.0%
!! CCCTCTGAGACTTGGTTTAT+TGG + chr3_2:76548350-76548369 None:intergenic 45.0%
!! ACTTCAAACCCTCTGAGACT+TGG + chr3_2:76548358-76548377 None:intergenic 45.0%
ATTTGCAGCAAGGGATAGTG+TGG - chr3_2:76548447-76548466 Msa0426170:CDS 45.0%
CTTATTTCATGCAGGCTGGA+GGG - chr3_2:76548550-76548569 Msa0426170:intron 45.0%
TTCCTGCAGGAAGAAGAGAT+GGG - chr3_2:76548586-76548605 Msa0426170:intron 45.0%
CACTCAACTCTTTGCAAGGA+AGG - chr3_2:76548674-76548693 Msa0426170:CDS 45.0%
CTCAACTCTTTGCAAGGAAG+GGG - chr3_2:76548676-76548695 Msa0426170:CDS 45.0%
GATGAAATGGTCACTCTCTC+TGG - chr3_2:76548708-76548727 Msa0426170:CDS 45.0%
AAATGGTCACTCTCTCTGGT+AGG - chr3_2:76548712-76548731 Msa0426170:CDS 45.0%
AGGGATCTAAACTTGGATCC+TGG + chr3_2:76548895-76548914 None:intergenic 45.0%
TTGAAGAGGCAATGTCCACA+AGG - chr3_2:76548929-76548948 Msa0426170:intron 45.0%
! CCATTGGAACCACCAAGTTT+TGG + chr3_2:76548964-76548983 None:intergenic 45.0%
! CCAAAACTTGGTGGTTCCAA+TGG - chr3_2:76548961-76548980 Msa0426170:intron 45.0%
ATCCTACATCTGCAGTTCCA+GGG + chr3_2:76548997-76549016 None:intergenic 45.0%
TATCCTACATCTGCAGTTCC+AGG + chr3_2:76548998-76549017 None:intergenic 45.0%
TGCAGATGCAATGGTGAAGA+TGG - chr3_2:76549141-76549160 Msa0426170:CDS 45.0%
GCAGATGCAATGGTGAAGAT+GGG - chr3_2:76549142-76549161 Msa0426170:CDS 45.0%
AGTGTCTTGACAGGTAATGC+TGG - chr3_2:76549172-76549191 Msa0426170:CDS 45.0%
CAGGTAATGCTGGAGAGATT+AGG - chr3_2:76549182-76549201 Msa0426170:CDS 45.0%
GATTAGGACAAATTGCAGGG+TGG - chr3_2:76549198-76549217 Msa0426170:CDS 45.0%
ACAAATTGCAGGGTGGTCAA+TGG - chr3_2:76549205-76549224 Msa0426170:CDS 45.0%
AAGAATCCTGGAATTGCTGC+TGG - chr3_2:76548025-76548044 Msa0426170:CDS 45.0%
GTCTTTCTCTGCAGTGTTTG+AGG + chr3_2:76548320-76548339 None:intergenic 45.0%
! CTGAGACTTGGTTTATTGGC+TGG + chr3_2:76548346-76548365 None:intergenic 45.0%
GCCAATAAACCAAGTCTCAG+AGG - chr3_2:76548346-76548365 Msa0426170:intron 45.0%
!! CCCTCTGAGACTTGGTTTAT+TGG + chr3_2:76548350-76548369 None:intergenic 45.0%
!! ACTTCAAACCCTCTGAGACT+TGG + chr3_2:76548358-76548377 None:intergenic 45.0%
ATTTGCAGCAAGGGATAGTG+TGG - chr3_2:76548447-76548466 Msa0426170:CDS 45.0%
CTTATTTCATGCAGGCTGGA+GGG - chr3_2:76548550-76548569 Msa0426170:intron 45.0%
TTCCTGCAGGAAGAAGAGAT+GGG - chr3_2:76548586-76548605 Msa0426170:intron 45.0%
CACTCAACTCTTTGCAAGGA+AGG - chr3_2:76548674-76548693 Msa0426170:CDS 45.0%
CTCAACTCTTTGCAAGGAAG+GGG - chr3_2:76548676-76548695 Msa0426170:CDS 45.0%
GATGAAATGGTCACTCTCTC+TGG - chr3_2:76548708-76548727 Msa0426170:CDS 45.0%
AAATGGTCACTCTCTCTGGT+AGG - chr3_2:76548712-76548731 Msa0426170:CDS 45.0%
AGGGATCTAAACTTGGATCC+TGG + chr3_2:76548895-76548914 None:intergenic 45.0%
TTGAAGAGGCAATGTCCACA+AGG - chr3_2:76548929-76548948 Msa0426170:intron 45.0%
! CCATTGGAACCACCAAGTTT+TGG + chr3_2:76548964-76548983 None:intergenic 45.0%
! CCAAAACTTGGTGGTTCCAA+TGG - chr3_2:76548961-76548980 Msa0426170:intron 45.0%
ATCCTACATCTGCAGTTCCA+GGG + chr3_2:76548997-76549016 None:intergenic 45.0%
TATCCTACATCTGCAGTTCC+AGG + chr3_2:76548998-76549017 None:intergenic 45.0%
TGCAGATGCAATGGTGAAGA+TGG - chr3_2:76549141-76549160 Msa0426170:CDS 45.0%
GCAGATGCAATGGTGAAGAT+GGG - chr3_2:76549142-76549161 Msa0426170:CDS 45.0%
AGTGTCTTGACAGGTAATGC+TGG - chr3_2:76549172-76549191 Msa0426170:CDS 45.0%
CAGGTAATGCTGGAGAGATT+AGG - chr3_2:76549182-76549201 Msa0426170:CDS 45.0%
GATTAGGACAAATTGCAGGG+TGG - chr3_2:76549198-76549217 Msa0426170:CDS 45.0%
ACAAATTGCAGGGTGGTCAA+TGG - chr3_2:76549205-76549224 Msa0426170:CDS 45.0%
!! CAGAAGTGCTCATTCTCAGC+TGG - chr3_2:76547928-76547947 Msa0426170:CDS 50.0%
AAGTGCTCATTCTCAGCTGG+AGG - chr3_2:76547931-76547950 Msa0426170:CDS 50.0%
CTCATTCTCAGCTGGAGGTT+GGG - chr3_2:76547936-76547955 Msa0426170:CDS 50.0%
CTCAGCCATGCCACATGAAT+AGG + chr3_2:76547969-76547988 None:intergenic 50.0%
! ATTGTAGGGGTGTGACGCAT+CGG - chr3_2:76548276-76548295 Msa0426170:intron 50.0%
AGCAAGGGATAGTGTGGAGT+TGG - chr3_2:76548453-76548472 Msa0426170:CDS 50.0%
CCTCCAGCCTGCATGAAATA+AGG + chr3_2:76548552-76548571 None:intergenic 50.0%
! CCTTATTTCATGCAGGCTGG+AGG - chr3_2:76548549-76548568 Msa0426170:intron 50.0%
CTTGGCTATGATGTTCCTGC+AGG - chr3_2:76548573-76548592 Msa0426170:intron 50.0%
GTTCCTGCAGGAAGAAGAGA+TGG - chr3_2:76548585-76548604 Msa0426170:intron 50.0%
TTCCCATCTCTTCTTCCTGC+AGG + chr3_2:76548591-76548610 None:intergenic 50.0%
CTTCAGCAGCACTTCAATCC+AGG - chr3_2:76548874-76548893 Msa0426170:intron 50.0%
GGACAGATCAGTGTCTTGAC+AGG - chr3_2:76549163-76549182 Msa0426170:CDS 50.0%
!! CAGAAGTGCTCATTCTCAGC+TGG - chr3_2:76547928-76547947 Msa0426170:CDS 50.0%
AAGTGCTCATTCTCAGCTGG+AGG - chr3_2:76547931-76547950 Msa0426170:CDS 50.0%
CTCATTCTCAGCTGGAGGTT+GGG - chr3_2:76547936-76547955 Msa0426170:CDS 50.0%
CTCAGCCATGCCACATGAAT+AGG + chr3_2:76547969-76547988 None:intergenic 50.0%
! ATTGTAGGGGTGTGACGCAT+CGG - chr3_2:76548276-76548295 Msa0426170:intron 50.0%
AGCAAGGGATAGTGTGGAGT+TGG - chr3_2:76548453-76548472 Msa0426170:CDS 50.0%
CCTCCAGCCTGCATGAAATA+AGG + chr3_2:76548552-76548571 None:intergenic 50.0%
! CCTTATTTCATGCAGGCTGG+AGG - chr3_2:76548549-76548568 Msa0426170:intron 50.0%
CTTGGCTATGATGTTCCTGC+AGG - chr3_2:76548573-76548592 Msa0426170:intron 50.0%
GTTCCTGCAGGAAGAAGAGA+TGG - chr3_2:76548585-76548604 Msa0426170:intron 50.0%
TTCCCATCTCTTCTTCCTGC+AGG + chr3_2:76548591-76548610 None:intergenic 50.0%
CTTCAGCAGCACTTCAATCC+AGG - chr3_2:76548874-76548893 Msa0426170:intron 50.0%
GGACAGATCAGTGTCTTGAC+AGG - chr3_2:76549163-76549182 Msa0426170:CDS 50.0%
GCTCATTCTCAGCTGGAGGT+TGG - chr3_2:76547935-76547954 Msa0426170:CDS 55.0%
ACAAGGCCAGCAGCAATTCC+AGG + chr3_2:76548034-76548053 None:intergenic 55.0%
GGAGCAATGAGAGCGACCAA+TGG + chr3_2:76548831-76548850 None:intergenic 55.0%
CTGCAGTTCCAGGGCTAGAA+GGG + chr3_2:76548988-76549007 None:intergenic 55.0%
TCTGCAGTTCCAGGGCTAGA+AGG + chr3_2:76548989-76549008 None:intergenic 55.0%
AGCCCTGGAACTGCAGATGT+AGG - chr3_2:76548992-76549011 Msa0426170:intron 55.0%
GCTCATTCTCAGCTGGAGGT+TGG - chr3_2:76547935-76547954 Msa0426170:CDS 55.0%
ACAAGGCCAGCAGCAATTCC+AGG + chr3_2:76548034-76548053 None:intergenic 55.0%
GGAGCAATGAGAGCGACCAA+TGG + chr3_2:76548831-76548850 None:intergenic 55.0%
CTGCAGTTCCAGGGCTAGAA+GGG + chr3_2:76548988-76549007 None:intergenic 55.0%
TCTGCAGTTCCAGGGCTAGA+AGG + chr3_2:76548989-76549008 None:intergenic 55.0%
AGCCCTGGAACTGCAGATGT+AGG - chr3_2:76548992-76549011 Msa0426170:intron 55.0%
TTCATGCAGGCTGGAGGGCT+TGG - chr3_2:76548555-76548574 Msa0426170:intron 60.0%
TATGCAGGCGCGCACACCAT+TGG - chr3_2:76548812-76548831 Msa0426170:intron 60.0%
CCAGGGCTAGAAGGGTCCAT+TGG + chr3_2:76548980-76548999 None:intergenic 60.0%
CCAATGGACCCTTCTAGCCC+TGG - chr3_2:76548977-76548996 Msa0426170:intron 60.0%
TTCATGCAGGCTGGAGGGCT+TGG - chr3_2:76548555-76548574 Msa0426170:intron 60.0%
TATGCAGGCGCGCACACCAT+TGG - chr3_2:76548812-76548831 Msa0426170:intron 60.0%
CCAGGGCTAGAAGGGTCCAT+TGG + chr3_2:76548980-76548999 None:intergenic 60.0%
CCAATGGACCCTTCTAGCCC+TGG - chr3_2:76548977-76548996 Msa0426170:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76547872 76549231 76547872 ID=Msa0426170;Name=Msa0426170
chr3_2 mRNA 76547872 76549231 76547872 ID=Msa0426170-mRNA-1;Parent=Msa0426170;Name=Msa0426170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.5|1|1|1|4|0|316
chr3_2 exon 76549052 76549231 76549052 ID=Msa0426170-mRNA-1:exon:19796;Parent=Msa0426170-mRNA-1
chr3_2 exon 76548629 76548820 76548629 ID=Msa0426170-mRNA-1:exon:19795;Parent=Msa0426170-mRNA-1
chr3_2 exon 76548374 76548539 76548374 ID=Msa0426170-mRNA-1:exon:19794;Parent=Msa0426170-mRNA-1
chr3_2 exon 76547872 76548284 76547872 ID=Msa0426170-mRNA-1:exon:19793;Parent=Msa0426170-mRNA-1
chr3_2 CDS 76549052 76549231 76549052 ID=Msa0426170-mRNA-1:cds;Parent=Msa0426170-mRNA-1
chr3_2 CDS 76548629 76548820 76548629 ID=Msa0426170-mRNA-1:cds;Parent=Msa0426170-mRNA-1
chr3_2 CDS 76548374 76548539 76548374 ID=Msa0426170-mRNA-1:cds;Parent=Msa0426170-mRNA-1
chr3_2 CDS 76547872 76548284 76547872 ID=Msa0426170-mRNA-1:cds;Parent=Msa0426170-mRNA-1
Gene Sequence

>Msa0426170

ATGAATCCGAAAAAACTTAATTATGCAATTATAGTTTTGCTCGTATGTTTTTTGAACAGAAGTGCTCATTCTCAGCTGGAGGTTGGGTTTTATACCTATTCATGTGGCATGGCTGAGTTCATTGTAAAAGATGAGGTCAGAAAAAGTTTCAATAAGAATCCTGGAATTGCTGCTGGCCTTGGGTGTGACGCATCGGTACTTCTCGATTCTACTCCCTCAAACACTGCAGAGAAAGACTCTCCAGCCAATAAACCAAGTCTCAGAGGGTTTGAAGTTATTGATAATGCAAAGGCTAAACTCGAAGAAGAATGCAAAGGAATTGTTTCATGTGCTGACATAGTTGCATTTGCAGCAAGGGATAGTGTGGAGTTGGCTGGAGGGCTTGGCTATGATGTTCCTGCAGGAAGAAGAGATGGGAAAATATCACTAGCTTCAGATACAAGAACAGAATTACCTCCTCCAACTTTCGATGTTAACCAACTCACTCAACTCTTTGCAAGGAAGGGGTTAACACAAGATGAAATGGTCACTCTCTCTGGCGCGCACACCATTGGTCGCTCTCATTGCTCCGCTTTCAGCAAGAGATTATACAACTTCAGCAGCACTTCAATCCAGGATCCAAGTTTAGATCCCTCATATGCTGCACTATTGAAGAGGCAATGTCCACAAGGAAACACAAACCAAAACTTGGTGGTTCCAATGGACCCTTCTAGCCCTGGAACTGCAGATGTAGGATACTATAATGATATCTTGGCAAATAGAGGCTTGTTCACTTCTGATCAGACTCTCTTAACTAACACTGGAACAGCCAGAAAAGTTCATCAAAATGCTAGGAATCCATATCTATGGTCAAACAAATTTGCAGATGCAATGGTGAAGATGGGACAGATCAGTGTCTTGACAGGTAATGCTGGAGAGATTAGGACAAATTGCAGGGTGGTCAATGGCTAG
Protein sequence

>Msa0426170

MNPKKLNYAIIVLLVCFLNRSAHSQLEVGFYTYSCGMAEFIVKDEVRKSFNKNPGIAAGLGCDASVLLDSTPSNTAEKDSPANKPSLRGFEVIDNAKAKLEEECKGIVSCADIVAFAARDSVELAGGLGYDVPAGRRDGKISLASDTRTELPPPTFDVNQLTQLFARKGLTQDEMVTLSGAHTIGRSHCSAFSKRLYNFSSTSIQDPSLDPSYAALLKRQCPQGNTNQNLVVPMDPSSPGTADVGYYNDILANRGLFTSDQTLLTNTGTARKVHQNARNPYLWSNKFADAMVKMGQISVLTGNAGEIRTNCRVVNG*