AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093860 MtrunA17_Chr2g0334041 85.450 378 20 7 7 368 3 361 0.0 619
Msa0093860 MtrunA17_Chr1g0155301 27.820 266 129 12 154 366 166 421 1.42e-13 71.6
Msa0093860 MtrunA17_Chr2g0286441 40.000 100 48 4 274 366 298 392 1.10e-12 68.6
Msa0093860 MtrunA17_Chr1g0196071 50.000 62 24 1 312 366 340 401 1.87e-12 68.2
Msa0093860 MtrunA17_Chr2g0278511 40.909 110 44 5 272 366 323 426 3.47e-12 67.4
Msa0093860 MtrunA17_Chr5g0404321 38.947 95 44 3 281 366 326 415 6.51e-12 66.6
Msa0093860 MtrunA17_Chr8g0373001 36.697 109 54 4 267 366 309 411 1.53e-11 65.5
Msa0093860 MtrunA17_Chr1g0201891 36.207 116 47 4 272 366 321 430 1.84e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093860 AT1G16070.1 56.881 327 126 6 54 368 74 397 7.64e-128 373
Msa0093860 AT1G16070.2 54.839 279 111 6 54 320 74 349 4.83e-98 296
Msa0093860 AT1G16070.3 54.091 220 86 6 54 261 74 290 8.47e-73 228
Msa0093860 AT2G18280.2 25.948 343 177 13 91 366 60 392 5.85e-16 79.0
Msa0093860 AT2G18280.1 25.948 343 177 13 91 366 60 392 5.85e-16 79.0
Msa0093860 AT1G47270.3 26.953 256 136 10 154 366 140 387 2.04e-12 68.2
Msa0093860 AT1G47270.1 26.953 256 136 10 154 366 165 412 2.21e-12 68.2
Msa0093860 AT2G47900.3 53.226 62 22 2 312 366 345 406 2.53e-12 68.2
Msa0093860 AT1G47270.2 26.953 256 136 10 154 366 164 411 2.64e-12 68.2
Msa0093860 AT2G47900.2 53.226 62 22 2 312 366 344 405 2.69e-12 68.2
Msa0093860 AT2G47900.1 53.226 62 22 2 312 366 344 405 2.69e-12 68.2
Msa0093860 AT1G25280.3 31.884 138 69 3 249 366 134 266 3.61e-12 66.6
Msa0093860 AT1G25280.2 31.884 138 69 3 249 366 134 266 3.61e-12 66.6
Msa0093860 AT1G25280.1 31.884 138 69 3 249 366 312 444 1.11e-11 66.2
Msa0093860 AT3G06380.2 45.902 61 27 1 312 366 227 287 6.63e-11 63.2

Find 133 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGCAAAATGAAGATTT+TGG 0.149303 1_2:+76911948 Msa0093860:three_prime_UTR
TAAATTCCGAGACTTCTTTC+TGG 0.196069 1_2:-76911885 None:intergenic
TTTCAAACTCTTTGAAGATT+TGG 0.208848 1_2:+76910369 Msa0093860:CDS
GTTGAAAATGAGTTGGATTT+TGG 0.248838 1_2:-76910263 None:intergenic
GTTTACTACTGCGGGGCTTA+TGG 0.274791 1_2:-76910858 None:intergenic
GGTTCAGGTACAACACATTA+AGG 0.279223 1_2:+76911181 Msa0093860:intron
TTCAAACTCTTTGAAGATTT+GGG 0.291430 1_2:+76910370 Msa0093860:CDS
AAACTTTCAGCTCACGTTAG+AGG 0.301321 1_2:+76911449 Msa0093860:CDS
CCTGTACATGTTGCTATTGT+AGG 0.305231 1_2:-76910987 None:intergenic
GGTATAAAGAGAGAAGAAAT+TGG 0.306355 1_2:-76910540 None:intergenic
GACTTCTTTCTGGATGGGGC+TGG 0.309885 1_2:-76911875 None:intergenic
CCGGTTCAAAATACCACATT+TGG 0.317816 1_2:+76910818 Msa0093860:CDS
TACGACCAAGGGTTTGGTTT+TGG 0.321955 1_2:-76910139 None:intergenic
GAGCTTGACTATAGAGATAA+AGG 0.329596 1_2:+76911393 Msa0093860:CDS
ATTATTATTGTAGGAAGGTC+AGG 0.351343 1_2:+76910654 Msa0093860:intron
AAAAGTATCATCATCAGAAT+TGG 0.355965 1_2:-76910770 None:intergenic
AGACCATTGCCTATAGATAT+TGG 0.366407 1_2:+76910464 Msa0093860:CDS
AGACAAAAGCTTCACTAACT+TGG 0.373859 1_2:-76911913 None:intergenic
TTAAGGGACTGCCAATGAAT+TGG 0.380340 1_2:+76911198 Msa0093860:CDS
TGGTAGGGAGTTACAGATAC+AGG 0.380944 1_2:-76912256 None:intergenic
GCAACAAAGCTTTGCATCAA+TGG 0.384089 1_2:-76911775 None:intergenic
AAAATACCACATTTGGGATC+AGG 0.391655 1_2:+76910825 Msa0093860:CDS
TCCCACTCCGGCGCTTGTGG+TGG 0.398163 1_2:-76910705 None:intergenic
GTGTACTTGTGTTATTGTTA+AGG 0.401096 1_2:+76910490 Msa0093860:CDS
TGATGAAATTACGTCTTTCA+TGG 0.403271 1_2:+76912210 Msa0093860:three_prime_UTR
ACCTCCCACTCCGGCGCTTG+TGG 0.404570 1_2:-76910708 None:intergenic
AAAGACATAGATTGATGATT+GGG 0.409134 1_2:-76911038 None:intergenic
AAAACATACGACCAAGGGTT+TGG 0.409386 1_2:-76910145 None:intergenic
ACTTCTTTCTGGATGGGGCT+GGG 0.409519 1_2:-76911874 None:intergenic
ATATCCTTTGACTGGTTACC+AGG 0.411071 1_2:+76911731 Msa0093860:CDS
TTCCTACCCTCCCTAGCTGC+AGG 0.422680 1_2:-76911589 None:intergenic
CTGCTGCTCCTGCTTCCTCC+TGG 0.428096 1_2:+76910411 Msa0093860:CDS
TAGTCTTGACATGTTACAAC+TGG 0.433529 1_2:-76912289 None:intergenic
TGTTAAGGAACCAACTCCTC+AGG 0.436248 1_2:+76910505 Msa0093860:CDS
CCGAGACTTCTTTCTGGATG+GGG 0.437564 1_2:-76911879 None:intergenic
GAAAGACATAGATTGATGAT+TGG 0.438091 1_2:-76911039 None:intergenic
TCTACATATCAAAGACTTGT+TGG 0.438291 1_2:-76910444 None:intergenic
GTACACCTTCCAATATCTAT+AGG 0.439094 1_2:-76910473 None:intergenic
TAAGGGACTGCCAATGAATT+GGG 0.444518 1_2:+76911199 Msa0093860:CDS
GTTACAGATACAGGGTAGTT+AGG 0.445615 1_2:-76912247 None:intergenic
ATTTACTTTCTTTGATTCAA+AGG 0.452541 1_2:-76912121 None:intergenic
GTTTGCTATGATTAGGAGAA+TGG 0.459646 1_2:+76911554 Msa0093860:intron
GAGTTCAGAGGTTGAATCAA+TGG 0.461195 1_2:-76911833 None:intergenic
TCCGAGACTTCTTTCTGGAT+GGG 0.463268 1_2:-76911880 None:intergenic
CGGTTCAAAATACCACATTT+GGG 0.463937 1_2:+76910819 Msa0093860:CDS
GATAAAGGAAGGCCAGGACT+TGG 0.466820 1_2:+76911408 Msa0093860:CDS
AAGAGGTGGTTTACTACTGC+GGG 0.474800 1_2:-76910866 None:intergenic
GGGACGGCAGAATAGGAAAC+TGG 0.475585 1_2:+76910675 Msa0093860:CDS
AAGGTCAGGGACGGCAGAAT+AGG 0.479149 1_2:+76910668 Msa0093860:CDS
CCCACTCCGGCGCTTGTGGT+GGG 0.479209 1_2:-76910704 None:intergenic
TTCCGAGACTTCTTTCTGGA+TGG 0.480390 1_2:-76911881 None:intergenic
GAAGAATCAGAAGAAGGAAT+AGG 0.486222 1_2:-76910341 None:intergenic
CTTCAAAGAGTTTGAAAAGT+GGG 0.488487 1_2:-76910363 None:intergenic
CTACATATCAAAGACTTGTT+GGG 0.489447 1_2:-76910443 None:intergenic
GTATAAAGAGAGAAGAAATT+GGG 0.490055 1_2:-76910539 None:intergenic
CGTGTTTGTTGAAAATGAGT+TGG 0.490098 1_2:-76910270 None:intergenic
TCATCATACATCTAAACTAC+TGG 0.491400 1_2:-76912193 None:intergenic
ATCTGCAGATATCCTTTGAC+TGG 0.494012 1_2:+76911723 Msa0093860:intron
CCAACTCCTCAGGGTCTCTC+CGG 0.498571 1_2:+76910515 Msa0093860:CDS
AAATACCACATTTGGGATCA+GGG 0.506568 1_2:+76910826 Msa0093860:CDS
GGTTGAATCAATGGTGGGAT+GGG 0.511915 1_2:-76911824 None:intergenic
CCGGAGAGACCCTGAGGAGT+TGG 0.514963 1_2:-76910515 None:intergenic
AAAGTAGACCAGGAGGAAGC+AGG 0.520011 1_2:-76910419 None:intergenic
AAGTGGGAAGAATCAGAAGA+AGG 0.520266 1_2:-76910347 None:intergenic
AGCAGACAATCCTGCAGCTA+GGG 0.521878 1_2:+76911579 Msa0093860:CDS
GGAAGCCAAACATATGCAAA+AGG 0.524760 1_2:-76911754 None:intergenic
CCTCCTACCTTGTTATAGAG+TGG 0.527819 1_2:-76911263 None:intergenic
TATAGAGATAAAGGAAGGCC+AGG 0.527875 1_2:+76911402 Msa0093860:CDS
GACAAAAGCTTCACTAACTT+GGG 0.533081 1_2:-76911912 None:intergenic
AAGCAGACAATCCTGCAGCT+AGG 0.533935 1_2:+76911578 Msa0093860:CDS
CTTGTTGGGTAAAGTAGACC+AGG 0.539180 1_2:-76910429 None:intergenic
TTTGCTATGATTAGGAGAAT+GGG 0.539684 1_2:+76911555 Msa0093860:intron
ACCAAGTTGAACAAGAAGAA+AGG 0.541808 1_2:+76910088 None:intergenic
CAAAACCAAAACCAAACCCT+TGG 0.542341 1_2:+76910134 Msa0093860:CDS
ATCAAAGAAAGTAAATGAGC+TGG 0.545678 1_2:+76912128 Msa0093860:three_prime_UTR
CTGTGGCCCACCACAAGCGC+CGG 0.547264 1_2:+76910698 Msa0093860:CDS
AATAGTGAATCTTACAAAGT+CGG 0.547516 1_2:-76912079 None:intergenic
AAGTGCATCAACTATTCTCA+AGG 0.551216 1_2:+76911237 Msa0093860:CDS
GTTCAGGTACAACACATTAA+GGG 0.551230 1_2:+76911182 Msa0093860:intron
CCCCATCCAGAAAGAAGTCT+CGG 0.552075 1_2:+76911879 Msa0093860:three_prime_UTR
GATCTCTGGATTCCAAGTCC+TGG 0.553307 1_2:-76911420 None:intergenic
AGGTTGAATCAATGGTGGGA+TGG 0.555878 1_2:-76911825 None:intergenic
AAGAGAGAAGAAATTGGGAC+CGG 0.559507 1_2:-76910534 None:intergenic
AGACAATCCTGCAGCTAGGG+AGG 0.560928 1_2:+76911582 Msa0093860:CDS
GTCTTTCAAGAACACCAACC+AGG 0.561985 1_2:+76911055 Msa0093860:CDS
CCTACAATAGCAACATGTAC+AGG 0.562677 1_2:+76910987 Msa0093860:CDS
TTATTATTGTAGGAAGGTCA+GGG 0.564327 1_2:+76910655 Msa0093860:intron
ACCACAAGCGCCGGAGTGGG+AGG 0.564951 1_2:+76910707 Msa0093860:CDS
CCCACCACAAGCGCCGGAGT+GGG 0.568859 1_2:+76910704 Msa0093860:CDS
AGAAGAGATCTTGAGTTCAG+AGG 0.571984 1_2:-76911845 None:intergenic
TCTTCAAAGAGTTTGAAAAG+TGG 0.573900 1_2:-76910364 None:intergenic
TTGCATGCAGAACTGTAATG+AGG 0.573968 1_2:-76910309 None:intergenic
GACAATCCTGCAGCTAGGGA+GGG 0.574505 1_2:+76911583 Msa0093860:CDS
CCAAACATATGCAAAAGGCC+TGG 0.577415 1_2:-76911749 None:intergenic
AGCTTTGTTGCATAGTGTAG+TGG 0.581324 1_2:+76911787 Msa0093860:CDS
GCCCACCACAAGCGCCGGAG+TGG 0.582189 1_2:+76910703 Msa0093860:CDS
ACAGTTACCGCTAACCTCAC+CGG 0.586784 1_2:+76910799 Msa0093860:CDS
AGGAGCAGCAGCTTCAGAGT+CGG 0.586966 1_2:-76910399 None:intergenic
ATTTGAAAACATACGACCAA+GGG 0.596408 1_2:-76910150 None:intergenic
TTCAGAGGTTGAATCAATGG+TGG 0.596537 1_2:-76911830 None:intergenic
GTTAAGGAACCAACTCCTCA+GGG 0.602181 1_2:+76910506 Msa0093860:CDS
GGTGTGTCTAATCTTCAGCT+AGG 0.605551 1_2:+76911981 Msa0093860:three_prime_UTR
CATTGCCTATAGATATTGGA+AGG 0.608050 1_2:+76910468 Msa0093860:CDS
TGAAGTGAGACCTCCCACTC+CGG 0.610091 1_2:-76910717 None:intergenic
ACAGTAGCTCAGAATCTCAA+AGG 0.612108 1_2:+76910739 Msa0093860:CDS
AAGGCCTGGTAACCAGTCAA+AGG 0.614442 1_2:-76911735 None:intergenic
TACTCAACAACAGCAAGAGG+TGG 0.614584 1_2:-76910880 None:intergenic
GTTGGCATCAATCTCGCTGA+GGG 0.614601 1_2:-76910174 None:intergenic
CTTCCAATATCTATAGGCAA+TGG 0.616470 1_2:-76910467 None:intergenic
ATGAATCTAACTAACCTGGT+TGG 0.618468 1_2:-76911069 None:intergenic
GCAGAATAGGAAACTGGCTG+TGG 0.618843 1_2:+76910681 Msa0093860:CDS
ATCCTGCAGCTAGGGAGGGT+AGG 0.625245 1_2:+76911587 Msa0093860:CDS
TCAGAGGTTGAATCAATGGT+GGG 0.626797 1_2:-76911829 None:intergenic
ATGCAGAACTGTAATGAGGA+AGG 0.628521 1_2:-76910305 None:intergenic
TTGACTATAGAGATAAAGGA+AGG 0.630332 1_2:+76911397 Msa0093860:CDS
GGTAGGGAGTTACAGATACA+GGG 0.632480 1_2:-76912255 None:intergenic
GCTTACTCAACAACAGCAAG+AGG 0.633778 1_2:-76910883 None:intergenic
GGACTGCCAATGAATTGGGA+AGG 0.634626 1_2:+76911203 Msa0093860:CDS
CAAGAGGTGGTTTACTACTG+CGG 0.635758 1_2:-76910867 None:intergenic
AGTGCATCAACTATTCTCAA+GGG 0.640841 1_2:+76911238 Msa0093860:CDS
GATATCCCTGATCCCAAATG+TGG 0.643558 1_2:-76910831 None:intergenic
CAGCAGCTTCAGAGTCGGAG+TGG 0.644616 1_2:-76910394 None:intergenic
TTGATGCCAACGTTCAGCTG+AGG 0.653807 1_2:+76910186 Msa0093860:CDS
TATTGTAGGAAGGTCAGGGA+CGG 0.654971 1_2:+76910659 Msa0093860:intron
TAGCTACAACAACAAGAACA+AGG 0.657649 1_2:+76910217 Msa0093860:CDS
ACTATGCCTCAGCTGAACGT+TGG 0.657801 1_2:-76910192 None:intergenic
CGTTGGCATCAATCTCGCTG+AGG 0.662438 1_2:-76910175 None:intergenic
GATTTGAAAACATACGACCA+AGG 0.673412 1_2:-76910151 None:intergenic
AAGGGATCCACTCTATAACA+AGG 0.674607 1_2:+76911256 Msa0093860:CDS
AGAGGTGGTTTACTACTGCG+GGG 0.697959 1_2:-76910865 None:intergenic
TTGGGACCGGAGAGACCCTG+AGG 0.711109 1_2:-76910521 None:intergenic
TTGGCATCAATCTCGCTGAG+GGG 0.720118 1_2:-76910173 None:intergenic
GTTGGGTAAAGTAGACCAGG+AGG 0.744497 1_2:-76910426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATTATTATTATTATTGT+AGG + chr1_2:76910645-76910664 Msa0093860:intron 10.0%
!! TTATTACTAACAATAAAATT+TGG + chr1_2:76911158-76911177 Msa0093860:intron 10.0%
!! TATTACTAACAATAAAATTT+GGG + chr1_2:76911159-76911178 Msa0093860:intron 10.0%
!! CATATTATTATTATTATTGT+AGG + chr1_2:76910645-76910664 Msa0093860:intron 10.0%
!! TTATTACTAACAATAAAATT+TGG + chr1_2:76911158-76911177 Msa0093860:intron 10.0%
!! TATTACTAACAATAAAATTT+GGG + chr1_2:76911159-76911178 Msa0093860:intron 10.0%
!! ATATAATACATTACATACAT+AGG - chr1_2:76910564-76910583 None:intergenic 15.0%
!! TTATTATTATTATTGTAGGA+AGG + chr1_2:76910649-76910668 Msa0093860:intron 15.0%
!! ATTACTAACAATAAAATTTG+GGG + chr1_2:76911160-76911179 Msa0093860:intron 15.0%
!! TTAATGAAAATCAATATCAA+TGG - chr1_2:76911334-76911353 None:intergenic 15.0%
!! ATATAATACATTACATACAT+AGG - chr1_2:76910564-76910583 None:intergenic 15.0%
!! TTATTATTATTATTGTAGGA+AGG + chr1_2:76910649-76910668 Msa0093860:intron 15.0%
!! ATTACTAACAATAAAATTTG+GGG + chr1_2:76911160-76911179 Msa0093860:intron 15.0%
!! TTAATGAAAATCAATATCAA+TGG - chr1_2:76911334-76911353 None:intergenic 15.0%
!! ATACATAGAATAGAATAGAA+TGG - chr1_2:76910596-76910615 None:intergenic 20.0%
!!! GTTTTTATGTTATAACAACT+CGG + chr1_2:76911501-76911520 Msa0093860:intron 20.0%
!!! AGGAAAATCTAATTTTGTTA+TGG + chr1_2:76911607-76911626 Msa0093860:CDS 20.0%
!! ATTTACTTTCTTTGATTCAA+AGG - chr1_2:76912124-76912143 None:intergenic 20.0%
!! ATACATAGAATAGAATAGAA+TGG - chr1_2:76910596-76910615 None:intergenic 20.0%
!!! GTTTTTATGTTATAACAACT+CGG + chr1_2:76911501-76911520 Msa0093860:intron 20.0%
!!! AGGAAAATCTAATTTTGTTA+TGG + chr1_2:76911607-76911626 Msa0093860:CDS 20.0%
!! ATTTACTTTCTTTGATTCAA+AGG - chr1_2:76912124-76912143 None:intergenic 20.0%
!! TTTCAAACTCTTTGAAGATT+TGG + chr1_2:76910369-76910388 Msa0093860:CDS 25.0%
!! TTCAAACTCTTTGAAGATTT+GGG + chr1_2:76910370-76910389 Msa0093860:CDS 25.0%
! GTATAAAGAGAGAAGAAATT+GGG - chr1_2:76910542-76910561 None:intergenic 25.0%
!!! AAAAGTATCATCATCAGAAT+TGG - chr1_2:76910773-76910792 None:intergenic 25.0%
!! AAAGACATAGATTGATGATT+GGG - chr1_2:76911041-76911060 None:intergenic 25.0%
! TTATAACATAAAAACCCTTC+CGG - chr1_2:76911496-76911515 None:intergenic 25.0%
!! CAAAAGCAAAATGAAGATTT+TGG + chr1_2:76911948-76911967 Msa0093860:three_prime_UTR 25.0%
! AATAGTGAATCTTACAAAGT+CGG - chr1_2:76912082-76912101 None:intergenic 25.0%
!!! TTACAACTGGTTTACATTTT+TGG - chr1_2:76912279-76912298 None:intergenic 25.0%
!! TTTCAAACTCTTTGAAGATT+TGG + chr1_2:76910369-76910388 Msa0093860:CDS 25.0%
!! TTCAAACTCTTTGAAGATTT+GGG + chr1_2:76910370-76910389 Msa0093860:CDS 25.0%
! GTATAAAGAGAGAAGAAATT+GGG - chr1_2:76910542-76910561 None:intergenic 25.0%
!!! AAAAGTATCATCATCAGAAT+TGG - chr1_2:76910773-76910792 None:intergenic 25.0%
!! AAAGACATAGATTGATGATT+GGG - chr1_2:76911041-76911060 None:intergenic 25.0%
! TTATAACATAAAAACCCTTC+CGG - chr1_2:76911496-76911515 None:intergenic 25.0%
!! CAAAAGCAAAATGAAGATTT+TGG + chr1_2:76911948-76911967 Msa0093860:three_prime_UTR 25.0%
! AATAGTGAATCTTACAAAGT+CGG - chr1_2:76912082-76912101 None:intergenic 25.0%
!!! TTACAACTGGTTTACATTTT+TGG - chr1_2:76912279-76912298 None:intergenic 25.0%
!!! TTTGGTTTTGGTTTTGGTTT+TGG - chr1_2:76910124-76910143 None:intergenic 30.0%
ATTTGAAAACATACGACCAA+GGG - chr1_2:76910153-76910172 None:intergenic 30.0%
!! TTTTGGAAGAGAAACAACAT+TGG - chr1_2:76910249-76910268 None:intergenic 30.0%
!! GTTGAAAATGAGTTGGATTT+TGG - chr1_2:76910266-76910285 None:intergenic 30.0%
CTTCAAAGAGTTTGAAAAGT+GGG - chr1_2:76910366-76910385 None:intergenic 30.0%
TCTTCAAAGAGTTTGAAAAG+TGG - chr1_2:76910367-76910386 None:intergenic 30.0%
! CTACATATCAAAGACTTGTT+GGG - chr1_2:76910446-76910465 None:intergenic 30.0%
TCTACATATCAAAGACTTGT+TGG - chr1_2:76910447-76910466 None:intergenic 30.0%
! GTGTACTTGTGTTATTGTTA+AGG + chr1_2:76910490-76910509 Msa0093860:CDS 30.0%
GGTATAAAGAGAGAAGAAAT+TGG - chr1_2:76910543-76910562 None:intergenic 30.0%
ATTATTATTGTAGGAAGGTC+AGG + chr1_2:76910654-76910673 Msa0093860:intron 30.0%
TTATTATTGTAGGAAGGTCA+GGG + chr1_2:76910655-76910674 Msa0093860:intron 30.0%
!! TCTGATGATGATACTTTTCT+CGG + chr1_2:76910775-76910794 Msa0093860:CDS 30.0%
! TAACTAGTACATCATTTTGC+AGG + chr1_2:76910958-76910977 Msa0093860:intron 30.0%
! GAAAGACATAGATTGATGAT+TGG - chr1_2:76911042-76911061 None:intergenic 30.0%
GAAAATGAATCTAACTAACC+TGG - chr1_2:76911076-76911095 None:intergenic 30.0%
! AACAATAAAATTTGGGGTTC+AGG + chr1_2:76911166-76911185 Msa0093860:intron 30.0%
! ATTTTTCCTTCCCAATTCAT+TGG - chr1_2:76911212-76911231 None:intergenic 30.0%
AATGAATTGGGAAGGAAAAA+TGG + chr1_2:76911211-76911230 Msa0093860:CDS 30.0%
GAAAATCAATATCAATGGCT+TGG - chr1_2:76911329-76911348 None:intergenic 30.0%
TTGACTATAGAGATAAAGGA+AGG + chr1_2:76911397-76911416 Msa0093860:CDS 30.0%
TATAACATAAAAACCCTTCC+GGG - chr1_2:76911495-76911514 None:intergenic 30.0%
!! GATTTGTGTTTGCTATGATT+AGG + chr1_2:76911547-76911566 Msa0093860:intron 30.0%
! TTTGCTATGATTAGGAGAAT+GGG + chr1_2:76911555-76911574 Msa0093860:intron 30.0%
!! CTAATTTTGTTATGGACTAC+AGG + chr1_2:76911615-76911634 Msa0093860:CDS 30.0%
!!! GAAGATTTTGGAGTTGTATT+TGG + chr1_2:76911960-76911979 Msa0093860:three_prime_UTR 30.0%
!! ACATTCATTTTTGCGATAGT+TGG - chr1_2:76912022-76912041 None:intergenic 30.0%
ATCAAAGAAAGTAAATGAGC+TGG + chr1_2:76912128-76912147 Msa0093860:three_prime_UTR 30.0%
TCATCATACATCTAAACTAC+TGG - chr1_2:76912196-76912215 None:intergenic 30.0%
TGATGAAATTACGTCTTTCA+TGG + chr1_2:76912210-76912229 Msa0093860:three_prime_UTR 30.0%
!!! ACTGGTTTACATTTTTGGTA+GGG - chr1_2:76912274-76912293 None:intergenic 30.0%
!!! AACTGGTTTACATTTTTGGT+AGG - chr1_2:76912275-76912294 None:intergenic 30.0%
!!! TTTGGTTTTGGTTTTGGTTT+TGG - chr1_2:76910124-76910143 None:intergenic 30.0%
ATTTGAAAACATACGACCAA+GGG - chr1_2:76910153-76910172 None:intergenic 30.0%
!! TTTTGGAAGAGAAACAACAT+TGG - chr1_2:76910249-76910268 None:intergenic 30.0%
!! GTTGAAAATGAGTTGGATTT+TGG - chr1_2:76910266-76910285 None:intergenic 30.0%
CTTCAAAGAGTTTGAAAAGT+GGG - chr1_2:76910366-76910385 None:intergenic 30.0%
TCTTCAAAGAGTTTGAAAAG+TGG - chr1_2:76910367-76910386 None:intergenic 30.0%
! CTACATATCAAAGACTTGTT+GGG - chr1_2:76910446-76910465 None:intergenic 30.0%
TCTACATATCAAAGACTTGT+TGG - chr1_2:76910447-76910466 None:intergenic 30.0%
! GTGTACTTGTGTTATTGTTA+AGG + chr1_2:76910490-76910509 Msa0093860:CDS 30.0%
GGTATAAAGAGAGAAGAAAT+TGG - chr1_2:76910543-76910562 None:intergenic 30.0%
ATTATTATTGTAGGAAGGTC+AGG + chr1_2:76910654-76910673 Msa0093860:intron 30.0%
TTATTATTGTAGGAAGGTCA+GGG + chr1_2:76910655-76910674 Msa0093860:intron 30.0%
!! TCTGATGATGATACTTTTCT+CGG + chr1_2:76910775-76910794 Msa0093860:CDS 30.0%
! TAACTAGTACATCATTTTGC+AGG + chr1_2:76910958-76910977 Msa0093860:intron 30.0%
! GAAAGACATAGATTGATGAT+TGG - chr1_2:76911042-76911061 None:intergenic 30.0%
GAAAATGAATCTAACTAACC+TGG - chr1_2:76911076-76911095 None:intergenic 30.0%
! AACAATAAAATTTGGGGTTC+AGG + chr1_2:76911166-76911185 Msa0093860:intron 30.0%
! ATTTTTCCTTCCCAATTCAT+TGG - chr1_2:76911212-76911231 None:intergenic 30.0%
AATGAATTGGGAAGGAAAAA+TGG + chr1_2:76911211-76911230 Msa0093860:CDS 30.0%
GAAAATCAATATCAATGGCT+TGG - chr1_2:76911329-76911348 None:intergenic 30.0%
TTGACTATAGAGATAAAGGA+AGG + chr1_2:76911397-76911416 Msa0093860:CDS 30.0%
TATAACATAAAAACCCTTCC+GGG - chr1_2:76911495-76911514 None:intergenic 30.0%
!! GATTTGTGTTTGCTATGATT+AGG + chr1_2:76911547-76911566 Msa0093860:intron 30.0%
! TTTGCTATGATTAGGAGAAT+GGG + chr1_2:76911555-76911574 Msa0093860:intron 30.0%
!! CTAATTTTGTTATGGACTAC+AGG + chr1_2:76911615-76911634 Msa0093860:CDS 30.0%
!!! GAAGATTTTGGAGTTGTATT+TGG + chr1_2:76911960-76911979 Msa0093860:three_prime_UTR 30.0%
!! ACATTCATTTTTGCGATAGT+TGG - chr1_2:76912022-76912041 None:intergenic 30.0%
ATCAAAGAAAGTAAATGAGC+TGG + chr1_2:76912128-76912147 Msa0093860:three_prime_UTR 30.0%
TCATCATACATCTAAACTAC+TGG - chr1_2:76912196-76912215 None:intergenic 30.0%
TGATGAAATTACGTCTTTCA+TGG + chr1_2:76912210-76912229 Msa0093860:three_prime_UTR 30.0%
!!! ACTGGTTTACATTTTTGGTA+GGG - chr1_2:76912274-76912293 None:intergenic 30.0%
!!! AACTGGTTTACATTTTTGGT+AGG - chr1_2:76912275-76912294 None:intergenic 30.0%
GATTTGAAAACATACGACCA+AGG - chr1_2:76910154-76910173 None:intergenic 35.0%
TAGCTACAACAACAAGAACA+AGG + chr1_2:76910217-76910236 Msa0093860:CDS 35.0%
! CGTGTTTGTTGAAAATGAGT+TGG - chr1_2:76910273-76910292 None:intergenic 35.0%
! ACTCATTTTCAACAAACACG+AGG + chr1_2:76910273-76910292 Msa0093860:CDS 35.0%
GAAGAATCAGAAGAAGGAAT+AGG - chr1_2:76910344-76910363 None:intergenic 35.0%
AGACCATTGCCTATAGATAT+TGG + chr1_2:76910464-76910483 Msa0093860:CDS 35.0%
CTTCCAATATCTATAGGCAA+TGG - chr1_2:76910470-76910489 None:intergenic 35.0%
CATTGCCTATAGATATTGGA+AGG + chr1_2:76910468-76910487 Msa0093860:CDS 35.0%
GTACACCTTCCAATATCTAT+AGG - chr1_2:76910476-76910495 None:intergenic 35.0%
!! CCAAATGTGGTATTTTGAAC+CGG - chr1_2:76910821-76910840 None:intergenic 35.0%
CGGTTCAAAATACCACATTT+GGG + chr1_2:76910819-76910838 Msa0093860:CDS 35.0%
! AAAATACCACATTTGGGATC+AGG + chr1_2:76910825-76910844 Msa0093860:CDS 35.0%
! AAATACCACATTTGGGATCA+GGG + chr1_2:76910826-76910845 Msa0093860:CDS 35.0%
TTAGTTAGCAGAGAAGAATG+AGG - chr1_2:76910941-76910960 None:intergenic 35.0%
ATGAATCTAACTAACCTGGT+TGG - chr1_2:76911072-76911091 None:intergenic 35.0%
GTTCAGGTACAACACATTAA+GGG + chr1_2:76911182-76911201 Msa0093860:intron 35.0%
AAGTGCATCAACTATTCTCA+AGG + chr1_2:76911237-76911256 Msa0093860:CDS 35.0%
AGTGCATCAACTATTCTCAA+GGG + chr1_2:76911238-76911257 Msa0093860:CDS 35.0%
TTGCTTTGTACTCTTGATGA+AGG - chr1_2:76911370-76911389 None:intergenic 35.0%
GAGCTTGACTATAGAGATAA+AGG + chr1_2:76911393-76911412 Msa0093860:CDS 35.0%
!! GAAAGTTTTTAACGGATCTC+TGG - chr1_2:76911437-76911456 None:intergenic 35.0%
! CGTGAGCTGAAAGTTTTTAA+CGG - chr1_2:76911445-76911464 None:intergenic 35.0%
!! GTTTGCTATGATTAGGAGAA+TGG + chr1_2:76911554-76911573 Msa0093860:intron 35.0%
!!! GACCTTAATGTGTTTTGAAG+AGG + chr1_2:76911666-76911685 Msa0093860:intron 35.0%
!!! CTTAATGTGTTTTGAAGAGG+CGG + chr1_2:76911669-76911688 Msa0093860:intron 35.0%
!!! TTAATGTGTTTTGAAGAGGC+GGG + chr1_2:76911670-76911689 Msa0093860:intron 35.0%
TAAATTCCGAGACTTCTTTC+TGG - chr1_2:76911888-76911907 None:intergenic 35.0%
GACAAAAGCTTCACTAACTT+GGG - chr1_2:76911915-76911934 None:intergenic 35.0%
AGACAAAAGCTTCACTAACT+TGG - chr1_2:76911916-76911935 None:intergenic 35.0%
!! TCATTTTTGCGATAGTTGGA+TGG - chr1_2:76912018-76912037 None:intergenic 35.0%
GATTTGAAAACATACGACCA+AGG - chr1_2:76910154-76910173 None:intergenic 35.0%
TAGCTACAACAACAAGAACA+AGG + chr1_2:76910217-76910236 Msa0093860:CDS 35.0%
! CGTGTTTGTTGAAAATGAGT+TGG - chr1_2:76910273-76910292 None:intergenic 35.0%
! ACTCATTTTCAACAAACACG+AGG + chr1_2:76910273-76910292 Msa0093860:CDS 35.0%
GAAGAATCAGAAGAAGGAAT+AGG - chr1_2:76910344-76910363 None:intergenic 35.0%
AGACCATTGCCTATAGATAT+TGG + chr1_2:76910464-76910483 Msa0093860:CDS 35.0%
CTTCCAATATCTATAGGCAA+TGG - chr1_2:76910470-76910489 None:intergenic 35.0%
CATTGCCTATAGATATTGGA+AGG + chr1_2:76910468-76910487 Msa0093860:CDS 35.0%
GTACACCTTCCAATATCTAT+AGG - chr1_2:76910476-76910495 None:intergenic 35.0%
!! CCAAATGTGGTATTTTGAAC+CGG - chr1_2:76910821-76910840 None:intergenic 35.0%
CGGTTCAAAATACCACATTT+GGG + chr1_2:76910819-76910838 Msa0093860:CDS 35.0%
! AAAATACCACATTTGGGATC+AGG + chr1_2:76910825-76910844 Msa0093860:CDS 35.0%
! AAATACCACATTTGGGATCA+GGG + chr1_2:76910826-76910845 Msa0093860:CDS 35.0%
TTAGTTAGCAGAGAAGAATG+AGG - chr1_2:76910941-76910960 None:intergenic 35.0%
ATGAATCTAACTAACCTGGT+TGG - chr1_2:76911072-76911091 None:intergenic 35.0%
GTTCAGGTACAACACATTAA+GGG + chr1_2:76911182-76911201 Msa0093860:intron 35.0%
AAGTGCATCAACTATTCTCA+AGG + chr1_2:76911237-76911256 Msa0093860:CDS 35.0%
AGTGCATCAACTATTCTCAA+GGG + chr1_2:76911238-76911257 Msa0093860:CDS 35.0%
TTGCTTTGTACTCTTGATGA+AGG - chr1_2:76911370-76911389 None:intergenic 35.0%
GAGCTTGACTATAGAGATAA+AGG + chr1_2:76911393-76911412 Msa0093860:CDS 35.0%
!! GAAAGTTTTTAACGGATCTC+TGG - chr1_2:76911437-76911456 None:intergenic 35.0%
! CGTGAGCTGAAAGTTTTTAA+CGG - chr1_2:76911445-76911464 None:intergenic 35.0%
!! GTTTGCTATGATTAGGAGAA+TGG + chr1_2:76911554-76911573 Msa0093860:intron 35.0%
!!! GACCTTAATGTGTTTTGAAG+AGG + chr1_2:76911666-76911685 Msa0093860:intron 35.0%
!!! CTTAATGTGTTTTGAAGAGG+CGG + chr1_2:76911669-76911688 Msa0093860:intron 35.0%
!!! TTAATGTGTTTTGAAGAGGC+GGG + chr1_2:76911670-76911689 Msa0093860:intron 35.0%
TAAATTCCGAGACTTCTTTC+TGG - chr1_2:76911888-76911907 None:intergenic 35.0%
GACAAAAGCTTCACTAACTT+GGG - chr1_2:76911915-76911934 None:intergenic 35.0%
AGACAAAAGCTTCACTAACT+TGG - chr1_2:76911916-76911935 None:intergenic 35.0%
!! TCATTTTTGCGATAGTTGGA+TGG - chr1_2:76912018-76912037 None:intergenic 35.0%
!!! CAAGGGTTTGGTTTTGGTTT+TGG - chr1_2:76910136-76910155 None:intergenic 40.0%
CAAAACCAAAACCAAACCCT+TGG + chr1_2:76910134-76910153 Msa0093860:CDS 40.0%
AAAACATACGACCAAGGGTT+TGG - chr1_2:76910148-76910167 None:intergenic 40.0%
ATGCAGAACTGTAATGAGGA+AGG - chr1_2:76910308-76910327 None:intergenic 40.0%
TTGCATGCAGAACTGTAATG+AGG - chr1_2:76910312-76910331 None:intergenic 40.0%
AAGTGGGAAGAATCAGAAGA+AGG - chr1_2:76910350-76910369 None:intergenic 40.0%
AAGAGAGAAGAAATTGGGAC+CGG - chr1_2:76910537-76910556 None:intergenic 40.0%
ACAGTAGCTCAGAATCTCAA+AGG + chr1_2:76910739-76910758 Msa0093860:CDS 40.0%
CCGGTTCAAAATACCACATT+TGG + chr1_2:76910818-76910837 Msa0093860:CDS 40.0%
AGGTGGAGATTGAGAGATTT+AGG - chr1_2:76910908-76910927 None:intergenic 40.0%
TAAATCTCTCAATCTCCACC+TGG + chr1_2:76910907-76910926 Msa0093860:intron 40.0%
! CCTGTACATGTTGCTATTGT+AGG - chr1_2:76910990-76911009 None:intergenic 40.0%
CCTACAATAGCAACATGTAC+AGG + chr1_2:76910987-76911006 Msa0093860:CDS 40.0%
GGTTCAGGTACAACACATTA+AGG + chr1_2:76911181-76911200 Msa0093860:intron 40.0%
TTAAGGGACTGCCAATGAAT+TGG + chr1_2:76911198-76911217 Msa0093860:CDS 40.0%
TAAGGGACTGCCAATGAATT+GGG + chr1_2:76911199-76911218 Msa0093860:CDS 40.0%
AAGGGATCCACTCTATAACA+AGG + chr1_2:76911256-76911275 Msa0093860:CDS 40.0%
GATCCACTCTATAACAAGGT+AGG + chr1_2:76911260-76911279 Msa0093860:intron 40.0%
AAAGAAACTTCCCCTAAGTG+AGG - chr1_2:76911291-76911310 None:intergenic 40.0%
TATAGAGATAAAGGAAGGCC+AGG + chr1_2:76911402-76911421 Msa0093860:CDS 40.0%
AAACTTTCAGCTCACGTTAG+AGG + chr1_2:76911449-76911468 Msa0093860:CDS 40.0%
CGCCTCTTCAAAACACATTA+AGG - chr1_2:76911671-76911690 None:intergenic 40.0%
!!! TAATGTGTTTTGAAGAGGCG+GGG + chr1_2:76911671-76911690 Msa0093860:intron 40.0%
ATTGACAGAGGAAATGGTAC+TGG - chr1_2:76911705-76911724 None:intergenic 40.0%
ATCTGCAGATATCCTTTGAC+TGG + chr1_2:76911723-76911742 Msa0093860:intron 40.0%
! ATATCCTTTGACTGGTTACC+AGG + chr1_2:76911731-76911750 Msa0093860:CDS 40.0%
GGAAGCCAAACATATGCAAA+AGG - chr1_2:76911757-76911776 None:intergenic 40.0%
GCAACAAAGCTTTGCATCAA+TGG - chr1_2:76911778-76911797 None:intergenic 40.0%
!! AGCTTTGTTGCATAGTGTAG+TGG + chr1_2:76911787-76911806 Msa0093860:CDS 40.0%
TCAGAGGTTGAATCAATGGT+GGG - chr1_2:76911832-76911851 None:intergenic 40.0%
TTCAGAGGTTGAATCAATGG+TGG - chr1_2:76911833-76911852 None:intergenic 40.0%
GAGTTCAGAGGTTGAATCAA+TGG - chr1_2:76911836-76911855 None:intergenic 40.0%
AGAAGAGATCTTGAGTTCAG+AGG - chr1_2:76911848-76911867 None:intergenic 40.0%
GTTACAGATACAGGGTAGTT+AGG - chr1_2:76912250-76912269 None:intergenic 40.0%
!!! CAAGGGTTTGGTTTTGGTTT+TGG - chr1_2:76910136-76910155 None:intergenic 40.0%
CAAAACCAAAACCAAACCCT+TGG + chr1_2:76910134-76910153 Msa0093860:CDS 40.0%
AAAACATACGACCAAGGGTT+TGG - chr1_2:76910148-76910167 None:intergenic 40.0%
ATGCAGAACTGTAATGAGGA+AGG - chr1_2:76910308-76910327 None:intergenic 40.0%
TTGCATGCAGAACTGTAATG+AGG - chr1_2:76910312-76910331 None:intergenic 40.0%
AAGTGGGAAGAATCAGAAGA+AGG - chr1_2:76910350-76910369 None:intergenic 40.0%
AAGAGAGAAGAAATTGGGAC+CGG - chr1_2:76910537-76910556 None:intergenic 40.0%
ACAGTAGCTCAGAATCTCAA+AGG + chr1_2:76910739-76910758 Msa0093860:CDS 40.0%
CCGGTTCAAAATACCACATT+TGG + chr1_2:76910818-76910837 Msa0093860:CDS 40.0%
AGGTGGAGATTGAGAGATTT+AGG - chr1_2:76910908-76910927 None:intergenic 40.0%
TAAATCTCTCAATCTCCACC+TGG + chr1_2:76910907-76910926 Msa0093860:intron 40.0%
! CCTGTACATGTTGCTATTGT+AGG - chr1_2:76910990-76911009 None:intergenic 40.0%
CCTACAATAGCAACATGTAC+AGG + chr1_2:76910987-76911006 Msa0093860:CDS 40.0%
GGTTCAGGTACAACACATTA+AGG + chr1_2:76911181-76911200 Msa0093860:intron 40.0%
TTAAGGGACTGCCAATGAAT+TGG + chr1_2:76911198-76911217 Msa0093860:CDS 40.0%
TAAGGGACTGCCAATGAATT+GGG + chr1_2:76911199-76911218 Msa0093860:CDS 40.0%
AAGGGATCCACTCTATAACA+AGG + chr1_2:76911256-76911275 Msa0093860:CDS 40.0%
GATCCACTCTATAACAAGGT+AGG + chr1_2:76911260-76911279 Msa0093860:intron 40.0%
AAAGAAACTTCCCCTAAGTG+AGG - chr1_2:76911291-76911310 None:intergenic 40.0%
TATAGAGATAAAGGAAGGCC+AGG + chr1_2:76911402-76911421 Msa0093860:CDS 40.0%
AAACTTTCAGCTCACGTTAG+AGG + chr1_2:76911449-76911468 Msa0093860:CDS 40.0%
CGCCTCTTCAAAACACATTA+AGG - chr1_2:76911671-76911690 None:intergenic 40.0%
!!! TAATGTGTTTTGAAGAGGCG+GGG + chr1_2:76911671-76911690 Msa0093860:intron 40.0%
ATTGACAGAGGAAATGGTAC+TGG - chr1_2:76911705-76911724 None:intergenic 40.0%
ATCTGCAGATATCCTTTGAC+TGG + chr1_2:76911723-76911742 Msa0093860:intron 40.0%
! ATATCCTTTGACTGGTTACC+AGG + chr1_2:76911731-76911750 Msa0093860:CDS 40.0%
GGAAGCCAAACATATGCAAA+AGG - chr1_2:76911757-76911776 None:intergenic 40.0%
GCAACAAAGCTTTGCATCAA+TGG - chr1_2:76911778-76911797 None:intergenic 40.0%
!! AGCTTTGTTGCATAGTGTAG+TGG + chr1_2:76911787-76911806 Msa0093860:CDS 40.0%
TCAGAGGTTGAATCAATGGT+GGG - chr1_2:76911832-76911851 None:intergenic 40.0%
TTCAGAGGTTGAATCAATGG+TGG - chr1_2:76911833-76911852 None:intergenic 40.0%
GAGTTCAGAGGTTGAATCAA+TGG - chr1_2:76911836-76911855 None:intergenic 40.0%
AGAAGAGATCTTGAGTTCAG+AGG - chr1_2:76911848-76911867 None:intergenic 40.0%
GTTACAGATACAGGGTAGTT+AGG - chr1_2:76912250-76912269 None:intergenic 40.0%
!! TACGACCAAGGGTTTGGTTT+TGG - chr1_2:76910142-76910161 None:intergenic 45.0%
CTTGTTGGGTAAAGTAGACC+AGG - chr1_2:76910432-76910451 None:intergenic 45.0%
TGTTAAGGAACCAACTCCTC+AGG + chr1_2:76910505-76910524 Msa0093860:CDS 45.0%
GTTAAGGAACCAACTCCTCA+GGG + chr1_2:76910506-76910525 Msa0093860:CDS 45.0%
TATTGTAGGAAGGTCAGGGA+CGG + chr1_2:76910659-76910678 Msa0093860:intron 45.0%
! TTTTGAACCGGTGAGGTTAG+CGG - chr1_2:76910809-76910828 None:intergenic 45.0%
!! TGTGGTATTTTGAACCGGTG+AGG - chr1_2:76910816-76910835 None:intergenic 45.0%
GATATCCCTGATCCCAAATG+TGG - chr1_2:76910834-76910853 None:intergenic 45.0%
AAGAGGTGGTTTACTACTGC+GGG - chr1_2:76910869-76910888 None:intergenic 45.0%
CAAGAGGTGGTTTACTACTG+CGG - chr1_2:76910870-76910889 None:intergenic 45.0%
TACTCAACAACAGCAAGAGG+TGG - chr1_2:76910883-76910902 None:intergenic 45.0%
GCTTACTCAACAACAGCAAG+AGG - chr1_2:76910886-76910905 None:intergenic 45.0%
GTTAGCAGAGAAGAATGAGG+CGG - chr1_2:76910938-76910957 None:intergenic 45.0%
GTCTTTCAAGAACACCAACC+AGG + chr1_2:76911055-76911074 Msa0093860:CDS 45.0%
! CCTCCTACCTTGTTATAGAG+TGG - chr1_2:76911266-76911285 None:intergenic 45.0%
CCACTCTATAACAAGGTAGG+AGG + chr1_2:76911263-76911282 Msa0093860:intron 45.0%
AGAGGTAACATCATTGACGC+CGG + chr1_2:76911467-76911486 Msa0093860:intron 45.0%
ATAAAAACCCTTCCGGGTTC+CGG - chr1_2:76911489-76911508 None:intergenic 45.0%
CTGCAGATTGACAGAGGAAA+TGG - chr1_2:76911711-76911730 None:intergenic 45.0%
GGATATCTGCAGATTGACAG+AGG - chr1_2:76911717-76911736 None:intergenic 45.0%
CCAAACATATGCAAAAGGCC+TGG - chr1_2:76911752-76911771 None:intergenic 45.0%
! CCAGGCCTTTTGCATATGTT+TGG + chr1_2:76911749-76911768 Msa0093860:CDS 45.0%
! GGTTGAATCAATGGTGGGAT+GGG - chr1_2:76911827-76911846 None:intergenic 45.0%
! AGGTTGAATCAATGGTGGGA+TGG - chr1_2:76911828-76911847 None:intergenic 45.0%
TCCGAGACTTCTTTCTGGAT+GGG - chr1_2:76911883-76911902 None:intergenic 45.0%
TTCCGAGACTTCTTTCTGGA+TGG - chr1_2:76911884-76911903 None:intergenic 45.0%
GGTGTGTCTAATCTTCAGCT+AGG + chr1_2:76911981-76912000 Msa0093860:three_prime_UTR 45.0%
GGTAGGGAGTTACAGATACA+GGG - chr1_2:76912258-76912277 None:intergenic 45.0%
TGGTAGGGAGTTACAGATAC+AGG - chr1_2:76912259-76912278 None:intergenic 45.0%
!! TACGACCAAGGGTTTGGTTT+TGG - chr1_2:76910142-76910161 None:intergenic 45.0%
CTTGTTGGGTAAAGTAGACC+AGG - chr1_2:76910432-76910451 None:intergenic 45.0%
TGTTAAGGAACCAACTCCTC+AGG + chr1_2:76910505-76910524 Msa0093860:CDS 45.0%
GTTAAGGAACCAACTCCTCA+GGG + chr1_2:76910506-76910525 Msa0093860:CDS 45.0%
TATTGTAGGAAGGTCAGGGA+CGG + chr1_2:76910659-76910678 Msa0093860:intron 45.0%
! TTTTGAACCGGTGAGGTTAG+CGG - chr1_2:76910809-76910828 None:intergenic 45.0%
!! TGTGGTATTTTGAACCGGTG+AGG - chr1_2:76910816-76910835 None:intergenic 45.0%
GATATCCCTGATCCCAAATG+TGG - chr1_2:76910834-76910853 None:intergenic 45.0%
AAGAGGTGGTTTACTACTGC+GGG - chr1_2:76910869-76910888 None:intergenic 45.0%
CAAGAGGTGGTTTACTACTG+CGG - chr1_2:76910870-76910889 None:intergenic 45.0%
TACTCAACAACAGCAAGAGG+TGG - chr1_2:76910883-76910902 None:intergenic 45.0%
GCTTACTCAACAACAGCAAG+AGG - chr1_2:76910886-76910905 None:intergenic 45.0%
GTTAGCAGAGAAGAATGAGG+CGG - chr1_2:76910938-76910957 None:intergenic 45.0%
GTCTTTCAAGAACACCAACC+AGG + chr1_2:76911055-76911074 Msa0093860:CDS 45.0%
! CCTCCTACCTTGTTATAGAG+TGG - chr1_2:76911266-76911285 None:intergenic 45.0%
CCACTCTATAACAAGGTAGG+AGG + chr1_2:76911263-76911282 Msa0093860:intron 45.0%
AGAGGTAACATCATTGACGC+CGG + chr1_2:76911467-76911486 Msa0093860:intron 45.0%
ATAAAAACCCTTCCGGGTTC+CGG - chr1_2:76911489-76911508 None:intergenic 45.0%
CTGCAGATTGACAGAGGAAA+TGG - chr1_2:76911711-76911730 None:intergenic 45.0%
GGATATCTGCAGATTGACAG+AGG - chr1_2:76911717-76911736 None:intergenic 45.0%
CCAAACATATGCAAAAGGCC+TGG - chr1_2:76911752-76911771 None:intergenic 45.0%
! CCAGGCCTTTTGCATATGTT+TGG + chr1_2:76911749-76911768 Msa0093860:CDS 45.0%
! GGTTGAATCAATGGTGGGAT+GGG - chr1_2:76911827-76911846 None:intergenic 45.0%
! AGGTTGAATCAATGGTGGGA+TGG - chr1_2:76911828-76911847 None:intergenic 45.0%
TCCGAGACTTCTTTCTGGAT+GGG - chr1_2:76911883-76911902 None:intergenic 45.0%
TTCCGAGACTTCTTTCTGGA+TGG - chr1_2:76911884-76911903 None:intergenic 45.0%
GGTGTGTCTAATCTTCAGCT+AGG + chr1_2:76911981-76912000 Msa0093860:three_prime_UTR 45.0%
GGTAGGGAGTTACAGATACA+GGG - chr1_2:76912258-76912277 None:intergenic 45.0%
TGGTAGGGAGTTACAGATAC+AGG - chr1_2:76912259-76912278 None:intergenic 45.0%
TTGGCATCAATCTCGCTGAG+GGG - chr1_2:76910176-76910195 None:intergenic 50.0%
GTTGGCATCAATCTCGCTGA+GGG - chr1_2:76910177-76910196 None:intergenic 50.0%
TTGATGCCAACGTTCAGCTG+AGG + chr1_2:76910186-76910205 Msa0093860:CDS 50.0%
ACTATGCCTCAGCTGAACGT+TGG - chr1_2:76910195-76910214 None:intergenic 50.0%
AAAGTAGACCAGGAGGAAGC+AGG - chr1_2:76910422-76910441 None:intergenic 50.0%
GTTGGGTAAAGTAGACCAGG+AGG - chr1_2:76910429-76910448 None:intergenic 50.0%
GCAGAATAGGAAACTGGCTG+TGG + chr1_2:76910681-76910700 Msa0093860:CDS 50.0%
ACAGTTACCGCTAACCTCAC+CGG + chr1_2:76910799-76910818 Msa0093860:CDS 50.0%
GTTTACTACTGCGGGGCTTA+TGG - chr1_2:76910861-76910880 None:intergenic 50.0%
AGAGGTGGTTTACTACTGCG+GGG - chr1_2:76910868-76910887 None:intergenic 50.0%
GGACTGCCAATGAATTGGGA+AGG + chr1_2:76911203-76911222 Msa0093860:CDS 50.0%
GATAAAGGAAGGCCAGGACT+TGG + chr1_2:76911408-76911427 Msa0093860:CDS 50.0%
GATCTCTGGATTCCAAGTCC+TGG - chr1_2:76911423-76911442 None:intergenic 50.0%
AAGCAGACAATCCTGCAGCT+AGG + chr1_2:76911578-76911597 Msa0093860:CDS 50.0%
AGCAGACAATCCTGCAGCTA+GGG + chr1_2:76911579-76911598 Msa0093860:CDS 50.0%
AAGGCCTGGTAACCAGTCAA+AGG - chr1_2:76911738-76911757 None:intergenic 50.0%
ACTTCTTTCTGGATGGGGCT+GGG - chr1_2:76911877-76911896 None:intergenic 50.0%
CCGAGACTTCTTTCTGGATG+GGG - chr1_2:76911882-76911901 None:intergenic 50.0%
CCCCATCCAGAAAGAAGTCT+CGG + chr1_2:76911879-76911898 Msa0093860:three_prime_UTR 50.0%
TTGGCATCAATCTCGCTGAG+GGG - chr1_2:76910176-76910195 None:intergenic 50.0%
GTTGGCATCAATCTCGCTGA+GGG - chr1_2:76910177-76910196 None:intergenic 50.0%
TTGATGCCAACGTTCAGCTG+AGG + chr1_2:76910186-76910205 Msa0093860:CDS 50.0%
ACTATGCCTCAGCTGAACGT+TGG - chr1_2:76910195-76910214 None:intergenic 50.0%
AAAGTAGACCAGGAGGAAGC+AGG - chr1_2:76910422-76910441 None:intergenic 50.0%
GTTGGGTAAAGTAGACCAGG+AGG - chr1_2:76910429-76910448 None:intergenic 50.0%
GCAGAATAGGAAACTGGCTG+TGG + chr1_2:76910681-76910700 Msa0093860:CDS 50.0%
ACAGTTACCGCTAACCTCAC+CGG + chr1_2:76910799-76910818 Msa0093860:CDS 50.0%
GTTTACTACTGCGGGGCTTA+TGG - chr1_2:76910861-76910880 None:intergenic 50.0%
AGAGGTGGTTTACTACTGCG+GGG - chr1_2:76910868-76910887 None:intergenic 50.0%
GGACTGCCAATGAATTGGGA+AGG + chr1_2:76911203-76911222 Msa0093860:CDS 50.0%
GATAAAGGAAGGCCAGGACT+TGG + chr1_2:76911408-76911427 Msa0093860:CDS 50.0%
GATCTCTGGATTCCAAGTCC+TGG - chr1_2:76911423-76911442 None:intergenic 50.0%
AAGCAGACAATCCTGCAGCT+AGG + chr1_2:76911578-76911597 Msa0093860:CDS 50.0%
AGCAGACAATCCTGCAGCTA+GGG + chr1_2:76911579-76911598 Msa0093860:CDS 50.0%
AAGGCCTGGTAACCAGTCAA+AGG - chr1_2:76911738-76911757 None:intergenic 50.0%
ACTTCTTTCTGGATGGGGCT+GGG - chr1_2:76911877-76911896 None:intergenic 50.0%
CCGAGACTTCTTTCTGGATG+GGG - chr1_2:76911882-76911901 None:intergenic 50.0%
CCCCATCCAGAAAGAAGTCT+CGG + chr1_2:76911879-76911898 Msa0093860:three_prime_UTR 50.0%
CGTTGGCATCAATCTCGCTG+AGG - chr1_2:76910178-76910197 None:intergenic 55.0%
AGGAGCAGCAGCTTCAGAGT+CGG - chr1_2:76910402-76910421 None:intergenic 55.0%
AAGGTCAGGGACGGCAGAAT+AGG + chr1_2:76910668-76910687 Msa0093860:CDS 55.0%
GGGACGGCAGAATAGGAAAC+TGG + chr1_2:76910675-76910694 Msa0093860:CDS 55.0%
TGAAGTGAGACCTCCCACTC+CGG - chr1_2:76910720-76910739 None:intergenic 55.0%
AGGTAGGAGGAGCCTCACTT+AGG + chr1_2:76911276-76911295 Msa0093860:intron 55.0%
GGTAGGAGGAGCCTCACTTA+GGG + chr1_2:76911277-76911296 Msa0093860:intron 55.0%
GTAGGAGGAGCCTCACTTAG+GGG + chr1_2:76911278-76911297 Msa0093860:intron 55.0%
ACATCATTGACGCCGGAACC+CGG + chr1_2:76911474-76911493 Msa0093860:intron 55.0%
AGACAATCCTGCAGCTAGGG+AGG + chr1_2:76911582-76911601 Msa0093860:CDS 55.0%
GACAATCCTGCAGCTAGGGA+GGG + chr1_2:76911583-76911602 Msa0093860:CDS 55.0%
GACTTCTTTCTGGATGGGGC+TGG - chr1_2:76911878-76911897 None:intergenic 55.0%
CGTTGGCATCAATCTCGCTG+AGG - chr1_2:76910178-76910197 None:intergenic 55.0%
AGGAGCAGCAGCTTCAGAGT+CGG - chr1_2:76910402-76910421 None:intergenic 55.0%
AAGGTCAGGGACGGCAGAAT+AGG + chr1_2:76910668-76910687 Msa0093860:CDS 55.0%
GGGACGGCAGAATAGGAAAC+TGG + chr1_2:76910675-76910694 Msa0093860:CDS 55.0%
TGAAGTGAGACCTCCCACTC+CGG - chr1_2:76910720-76910739 None:intergenic 55.0%
AGGTAGGAGGAGCCTCACTT+AGG + chr1_2:76911276-76911295 Msa0093860:intron 55.0%
GGTAGGAGGAGCCTCACTTA+GGG + chr1_2:76911277-76911296 Msa0093860:intron 55.0%
GTAGGAGGAGCCTCACTTAG+GGG + chr1_2:76911278-76911297 Msa0093860:intron 55.0%
ACATCATTGACGCCGGAACC+CGG + chr1_2:76911474-76911493 Msa0093860:intron 55.0%
AGACAATCCTGCAGCTAGGG+AGG + chr1_2:76911582-76911601 Msa0093860:CDS 55.0%
GACAATCCTGCAGCTAGGGA+GGG + chr1_2:76911583-76911602 Msa0093860:CDS 55.0%
GACTTCTTTCTGGATGGGGC+TGG - chr1_2:76911878-76911897 None:intergenic 55.0%
CAGCAGCTTCAGAGTCGGAG+TGG - chr1_2:76910397-76910416 None:intergenic 60.0%
CCAACTCCTCAGGGTCTCTC+CGG + chr1_2:76910515-76910534 Msa0093860:CDS 60.0%
CTCTCAATCTCCACCTGGCC+TGG + chr1_2:76910912-76910931 Msa0093860:intron 60.0%
CAGAGAAGAATGAGGCGGCC+AGG - chr1_2:76910933-76910952 None:intergenic 60.0%
ATTGACGCCGGAACCCGGAA+GGG + chr1_2:76911479-76911498 Msa0093860:intron 60.0%
ATCCTGCAGCTAGGGAGGGT+AGG + chr1_2:76911587-76911606 Msa0093860:CDS 60.0%
TTCCTACCCTCCCTAGCTGC+AGG - chr1_2:76911592-76911611 None:intergenic 60.0%
CAGCAGCTTCAGAGTCGGAG+TGG - chr1_2:76910397-76910416 None:intergenic 60.0%
CCAACTCCTCAGGGTCTCTC+CGG + chr1_2:76910515-76910534 Msa0093860:CDS 60.0%
CTCTCAATCTCCACCTGGCC+TGG + chr1_2:76910912-76910931 Msa0093860:intron 60.0%
CAGAGAAGAATGAGGCGGCC+AGG - chr1_2:76910933-76910952 None:intergenic 60.0%
ATTGACGCCGGAACCCGGAA+GGG + chr1_2:76911479-76911498 Msa0093860:intron 60.0%
ATCCTGCAGCTAGGGAGGGT+AGG + chr1_2:76911587-76911606 Msa0093860:CDS 60.0%
TTCCTACCCTCCCTAGCTGC+AGG - chr1_2:76911592-76911611 None:intergenic 60.0%
CTGCTGCTCCTGCTTCCTCC+TGG + chr1_2:76910411-76910430 Msa0093860:CDS 65.0%
CCGGAGAGACCCTGAGGAGT+TGG - chr1_2:76910518-76910537 None:intergenic 65.0%
TTGGGACCGGAGAGACCCTG+AGG - chr1_2:76910524-76910543 None:intergenic 65.0%
AAGAATGAGGCGGCCAGGCC+AGG - chr1_2:76910928-76910947 None:intergenic 65.0%
CATTGACGCCGGAACCCGGA+AGG + chr1_2:76911478-76911497 Msa0093860:intron 65.0%
CTGCTGCTCCTGCTTCCTCC+TGG + chr1_2:76910411-76910430 Msa0093860:CDS 65.0%
CCGGAGAGACCCTGAGGAGT+TGG - chr1_2:76910518-76910537 None:intergenic 65.0%
TTGGGACCGGAGAGACCCTG+AGG - chr1_2:76910524-76910543 None:intergenic 65.0%
AAGAATGAGGCGGCCAGGCC+AGG - chr1_2:76910928-76910947 None:intergenic 65.0%
CATTGACGCCGGAACCCGGA+AGG + chr1_2:76911478-76911497 Msa0093860:intron 65.0%
CTGTGGCCCACCACAAGCGC+CGG + chr1_2:76910698-76910717 Msa0093860:CDS 70.0%
CCCACTCCGGCGCTTGTGGT+GGG - chr1_2:76910707-76910726 None:intergenic 70.0%
!! CCCACCACAAGCGCCGGAGT+GGG + chr1_2:76910704-76910723 Msa0093860:CDS 70.0%
TCCCACTCCGGCGCTTGTGG+TGG - chr1_2:76910708-76910727 None:intergenic 70.0%
!! ACCACAAGCGCCGGAGTGGG+AGG + chr1_2:76910707-76910726 Msa0093860:CDS 70.0%
ACCTCCCACTCCGGCGCTTG+TGG - chr1_2:76910711-76910730 None:intergenic 70.0%
AATGAGGCGGCCAGGCCAGG+TGG - chr1_2:76910925-76910944 None:intergenic 70.0%
CTGTGGCCCACCACAAGCGC+CGG + chr1_2:76910698-76910717 Msa0093860:CDS 70.0%
CCCACTCCGGCGCTTGTGGT+GGG - chr1_2:76910707-76910726 None:intergenic 70.0%
!! CCCACCACAAGCGCCGGAGT+GGG + chr1_2:76910704-76910723 Msa0093860:CDS 70.0%
TCCCACTCCGGCGCTTGTGG+TGG - chr1_2:76910708-76910727 None:intergenic 70.0%
!! ACCACAAGCGCCGGAGTGGG+AGG + chr1_2:76910707-76910726 Msa0093860:CDS 70.0%
ACCTCCCACTCCGGCGCTTG+TGG - chr1_2:76910711-76910730 None:intergenic 70.0%
AATGAGGCGGCCAGGCCAGG+TGG - chr1_2:76910925-76910944 None:intergenic 70.0%
!! GCCCACCACAAGCGCCGGAG+TGG + chr1_2:76910703-76910722 Msa0093860:CDS 75.0%
!! GCCCACCACAAGCGCCGGAG+TGG + chr1_2:76910703-76910722 Msa0093860:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76910100 76912299 76910100 ID=Msa0093860;Name=Msa0093860
chr1_2 mRNA 76910100 76912299 76910100 ID=Msa0093860-mRNA-1;Parent=Msa0093860;Name=Msa0093860-mRNA-1;_AED=0.11;_eAED=0.11;_QI=16|1|1|1|1|1|7|493|368
chr1_2 exon 76910100 76910565 76910100 ID=Msa0093860-mRNA-1:exon:27168;Parent=Msa0093860-mRNA-1
chr1_2 exon 76910667 76910899 76910667 ID=Msa0093860-mRNA-1:exon:27169;Parent=Msa0093860-mRNA-1
chr1_2 exon 76910980 76911076 76910980 ID=Msa0093860-mRNA-1:exon:27170;Parent=Msa0093860-mRNA-1
chr1_2 exon 76911188 76911277 76911188 ID=Msa0093860-mRNA-1:exon:27171;Parent=Msa0093860-mRNA-1
chr1_2 exon 76911378 76911470 76911378 ID=Msa0093860-mRNA-1:exon:27172;Parent=Msa0093860-mRNA-1
chr1_2 exon 76911569 76911636 76911569 ID=Msa0093860-mRNA-1:exon:27173;Parent=Msa0093860-mRNA-1
chr1_2 exon 76911731 76912299 76911731 ID=Msa0093860-mRNA-1:exon:27174;Parent=Msa0093860-mRNA-1
chr1_2 five_prime_UTR 76910100 76910115 76910100 ID=Msa0093860-mRNA-1:five_prime_utr;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76910116 76910565 76910116 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76910667 76910899 76910667 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76910980 76911076 76910980 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76911188 76911277 76911188 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76911378 76911470 76911378 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76911569 76911636 76911569 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 CDS 76911731 76911806 76911731 ID=Msa0093860-mRNA-1:cds;Parent=Msa0093860-mRNA-1
chr1_2 three_prime_UTR 76911807 76912299 76911807 ID=Msa0093860-mRNA-1:three_prime_utr;Parent=Msa0093860-mRNA-1
Gene Sequence

>Msa0093860

ATGAAGAAAAACCAAAACCAAAACCAAAACCAAACCCTTGGTCGTATGTTTTCAAATCCCCTCAGCGAGATTGATGCCAACGTTCAGCTGAGGCATAGTCGTAGCTACAACAACAAGAACAAGGAAAATGCCAATGTTGTTTCTCTTCCAAAATCCAACTCATTTTCAACAAACACGAGGATTCTTAAGCCTTCCTCATTACAGTTCTGCATGCAAATAAACGATCCTATTCCTTCTTCTGATTCTTCCCACTTTTCAAACTCTTTGAAGATTTGGGACCACTCCGACTCTGAAGCTGCTGCTCCTGCTTCCTCCTGGTCTACTTTACCCAACAAGTCTTTGATATGTAGACCATTGCCTATAGATATTGGAAGGTGTACTTGTGTTATTGTTAAGGAACCAACTCCTCAGGGTCTCTCCGGTCCCAATTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGCCGGAGTGGGAGGTCTCACTTCACAGTAGCTCAGAATCTCAAAGGACTACTCTCCAATTCTGATGATGATACTTTTCTCGGTACAGTTACCGCTAACCTCACCGGTTCAAAATACCACATTTGGGATCAGGGATATCATCGCCATAAGCCCCGCAGTAGTAAACCACCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAATCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAACACATTAAGGGACTGCCAATGAATTGGGAAGGAAAAATGGACAAAGTGCATCAACTATTCTCAAGGGATCCACTCTATAACAAGAGTACAAAGCAATTTGAGCTTGACTATAGAGATAAAGGAAGGCCAGGACTTGGAATCCAGAGATCCGTTAAAAACTTTCAGCTCACGTTAGAGGAGAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTAGGAAAATCTAATTTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCCTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG

Protein sequence

>Msa0093860

MKKNQNQNQNQTLGRMFSNPLSEIDANVQLRHSRSYNNKNKENANVVSLPKSNSFSTNTRILKPSSLQFCMQINDPIPSSDSSHFSNSLKIWDHSDSEAAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPTPQGLSGPNFFSLYTYEGQGRQNRKLAVAHHKRRSGRSHFTVAQNLKGLLSNSDDDTFLGTVTANLTGSKYHIWDQGYHRHKPRSSKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKMDKVHQLFSRDPLYNKSTKQFELDYRDKGRPGLGIQRSVKNFQLTLEENGKQTILQLGRVGKSNFVMDYRYPLTGYQAFCICLASIDAKLCCIV*