Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524800 | XP_003603428.2 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.37e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524800 | G7JB51 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.13e-104 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0524800 | 0.805524 | 1.280539e-49 | -8.615850e-47 |
| Msa0025580 | Msa0524800 | 0.830275 | 3.219315e-55 | -8.615850e-47 |
| Msa0029960 | Msa0524800 | 0.820265 | 7.515948e-53 | -8.615850e-47 |
| Msa0032980 | Msa0524800 | 0.801503 | 8.732704e-49 | -8.615850e-47 |
| Msa0033780 | Msa0524800 | 0.829807 | 4.186391e-55 | -8.615850e-47 |
| Msa0050660 | Msa0524800 | 0.804631 | 1.969030e-49 | -8.615850e-47 |
| Msa0050700 | Msa0524800 | 0.803403 | 3.544670e-49 | -8.615850e-47 |
| Msa0057540 | Msa0524800 | 0.817958 | 2.516453e-52 | -8.615850e-47 |
| Msa0067060 | Msa0524800 | 0.812926 | 3.315489e-51 | -8.615850e-47 |
| Msa0073120 | Msa0524800 | 0.805602 | 1.233481e-49 | -8.615850e-47 |
| Msa0091350 | Msa0524800 | 0.821752 | 3.417063e-53 | -8.615850e-47 |
| Msa0093860 | Msa0524800 | 0.830683 | 2.558397e-55 | -8.615850e-47 |
| Msa0098410 | Msa0524800 | 0.803731 | 3.030185e-49 | -8.615850e-47 |
| Msa0115550 | Msa0524800 | 0.806454 | 8.160984e-50 | -8.615850e-47 |
| Msa0121330 | Msa0524800 | 0.836794 | 7.594366e-57 | -8.615850e-47 |
| Msa0127340 | Msa0524800 | 0.819148 | 1.351994e-52 | -8.615850e-47 |
| Msa0128570 | Msa0524800 | 0.812484 | 4.142312e-51 | -8.615850e-47 |
| Msa0140130 | Msa0524800 | 0.802832 | 4.652371e-49 | -8.615850e-47 |
| Msa0140380 | Msa0524800 | 0.808655 | 2.784146e-50 | -8.615850e-47 |
| Msa0141640 | Msa0524800 | 0.827589 | 1.438925e-54 | -8.615850e-47 |
| Msa0146650 | Msa0524800 | 0.819376 | 1.200105e-52 | -8.615850e-47 |
| Msa0154620 | Msa0524800 | 0.800909 | 1.155112e-48 | -8.615850e-47 |
| Msa0156050 | Msa0524800 | 0.809062 | 2.278407e-50 | -8.615850e-47 |
| Msa0156090 | Msa0524800 | 0.802062 | 6.704118e-49 | -8.615850e-47 |
| Msa0165830 | Msa0524800 | 0.805930 | 1.052084e-49 | -8.615850e-47 |
| Msa0166170 | Msa0524800 | 0.847358 | 1.216114e-59 | -8.615850e-47 |
| Msa0218020 | Msa0524800 | 0.800108 | 1.682043e-48 | -8.615850e-47 |
| Msa0373170 | Msa0524800 | 0.813320 | 2.716677e-51 | -8.615850e-47 |
| Msa0380540 | Msa0524800 | 0.823669 | 1.223029e-53 | -8.615850e-47 |
| Msa0381730 | Msa0524800 | 0.841468 | 4.665535e-58 | -8.615850e-47 |
| Msa0382740 | Msa0524800 | 0.985736 | 1.669940e-164 | -8.615850e-47 |
| Msa0382770 | Msa0524800 | 0.969927 | 7.577446e-131 | -8.615850e-47 |
| Msa0415140 | Msa0524800 | 0.821520 | 3.865490e-53 | -8.615850e-47 |
| Msa0415450 | Msa0524800 | 0.810120 | 1.349765e-50 | -8.615850e-47 |
| Msa0419450 | Msa0524800 | 0.801809 | 7.555835e-49 | -8.615850e-47 |
| Msa0420670 | Msa0524800 | 0.832904 | 7.242974e-56 | -8.615850e-47 |
| Msa0421750 | Msa0524800 | 0.806136 | 9.522173e-50 | -8.615850e-47 |
| Msa0430080 | Msa0524800 | 0.844180 | 8.867341e-59 | -8.615850e-47 |
| Msa0430170 | Msa0524800 | 0.838918 | 2.160851e-57 | -8.615850e-47 |
| Msa0430480 | Msa0524800 | 0.808066 | 3.716458e-50 | -8.615850e-47 |
| Msa0431200 | Msa0524800 | 0.840143 | 1.038080e-57 | -8.615850e-47 |
| Msa0433760 | Msa0524800 | 0.801027 | 1.093002e-48 | -8.615850e-47 |
| Msa0443410 | Msa0524800 | 0.810849 | 9.394757e-51 | -8.615850e-47 |
| Msa0460070 | Msa0524800 | 0.812775 | 3.577053e-51 | -8.615850e-47 |
| Msa0466520 | Msa0524800 | 0.848754 | 5.010364e-60 | -8.615850e-47 |
| Msa0467690 | Msa0524800 | 0.816374 | 5.716540e-52 | -8.615850e-47 |
| Msa0476280 | Msa0524800 | 0.841544 | 4.454544e-58 | -8.615850e-47 |
| Msa0477630 | Msa0524800 | 0.802405 | 5.698686e-49 | -8.615850e-47 |
| Msa0482080 | Msa0524800 | 0.809502 | 1.833573e-50 | -8.615850e-47 |
| Msa0341680 | Msa0524800 | 0.827975 | 1.162548e-54 | -8.615850e-47 |
| Msa0500450 | Msa0524800 | 0.828700 | 7.768696e-55 | -8.615850e-47 |
| Msa0507920 | Msa0524800 | 0.805886 | 1.075184e-49 | -8.615850e-47 |
| Msa0512530 | Msa0524800 | 0.836258 | 1.039600e-56 | -8.615850e-47 |
| Msa0513080 | Msa0524800 | 0.827334 | 1.656898e-54 | -8.615850e-47 |
| Msa0513560 | Msa0524800 | 0.822433 | 2.374910e-53 | -8.615850e-47 |
| Msa0514020 | Msa0524800 | 0.804387 | 2.213556e-49 | -8.615850e-47 |
| Msa0520260 | Msa0524800 | 0.844923 | 5.596557e-59 | -8.615850e-47 |
| Msa0520870 | Msa0524800 | 0.813909 | 2.015749e-51 | -8.615850e-47 |
| Msa0521320 | Msa0524800 | 0.815543 | 8.761484e-52 | -8.615850e-47 |
| Msa0524320 | Msa0524800 | 0.808185 | 3.506372e-50 | -8.615850e-47 |
| Msa0524430 | Msa0524800 | 0.808383 | 3.182016e-50 | -8.615850e-47 |
| Msa0524800 | Msa0525000 | 0.986619 | 2.128278e-167 | -8.615850e-47 |
| Msa0524800 | Msa0534100 | 0.824766 | 6.755865e-54 | -8.615850e-47 |
| Msa0524800 | Msa0537990 | 0.820872 | 5.453289e-53 | -8.615850e-47 |
| Msa0524800 | Msa0554300 | 0.821238 | 4.489558e-53 | -8.615850e-47 |
| Msa0524800 | Msa0557850 | 0.808677 | 2.754216e-50 | -8.615850e-47 |
| Msa0524800 | Msa0561560 | 0.852358 | 4.864104e-61 | -8.615850e-47 |
| Msa0524800 | Msa0563740 | 0.824098 | 9.702971e-54 | -8.615850e-47 |
| Msa0524800 | Msa0563900 | 0.806018 | 1.008552e-49 | -8.615850e-47 |
| Msa0524800 | Msa0563940 | 0.817342 | 3.465249e-52 | -8.615850e-47 |
| Msa0524800 | Msa0564980 | 0.813781 | 2.151318e-51 | -8.615850e-47 |
| Msa0524800 | Msa0570010 | 0.813898 | 2.027167e-51 | -8.615850e-47 |
| Msa0524800 | Msa0577280 | 0.808839 | 2.543101e-50 | -8.615850e-47 |
| Msa0524800 | Msa0577330 | 0.811439 | 6.997159e-51 | -8.615850e-47 |
| Msa0524800 | Msa0585340 | 0.807048 | 6.114928e-50 | -8.615850e-47 |
| Msa0524800 | Msa0590200 | 0.812647 | 3.816867e-51 | -8.615850e-47 |
| Msa0524800 | Msa0606100 | 0.833764 | 4.422091e-56 | -8.615850e-47 |
| Msa0524800 | Msa0608350 | 0.816720 | 4.782223e-52 | -8.615850e-47 |
| Msa0524800 | Msa0612520 | 0.832421 | 9.542912e-56 | -8.615850e-47 |
| Msa0524800 | Msa0613630 | 0.802161 | 6.396424e-49 | -8.615850e-47 |
| Msa0524800 | Msa0615630 | 0.804896 | 1.732977e-49 | -8.615850e-47 |
| Msa0524800 | Msa0620500 | 0.826107 | 3.252521e-54 | -8.615850e-47 |
| Msa0524800 | Msa0622920 | 0.808000 | 3.840246e-50 | -8.615850e-47 |
| Msa0524800 | Msa0630660 | 0.811896 | 5.567352e-51 | -8.615850e-47 |
| Msa0524800 | Msa0645340 | 0.830735 | 2.483509e-55 | -8.615850e-47 |
| Msa0524800 | Msa0647050 | 0.836959 | 6.892813e-57 | -8.615850e-47 |
| Msa0524800 | Msa0647440 | 0.812361 | 4.406135e-51 | -8.615850e-47 |
| Msa0524800 | Msa0648760 | 0.823561 | 1.295976e-53 | -8.615850e-47 |
| Msa0524800 | Msa0653160 | 0.832785 | 7.751518e-56 | -8.615850e-47 |
| Msa0524800 | Msa0654740 | 0.830601 | 2.678560e-55 | -8.615850e-47 |
| Msa0524800 | Msa0668900 | 0.833377 | 5.523059e-56 | -8.615850e-47 |
| Msa0524800 | Msa0687090 | 0.841413 | 4.823550e-58 | -8.615850e-47 |
| Msa0524800 | Msa0688620 | 0.808079 | 3.693191e-50 | -8.615850e-47 |
| Msa0524800 | Msa0690320 | 0.816408 | 5.615250e-52 | -8.615850e-47 |
| Msa0524800 | Msa0691270 | 0.835192 | 1.935937e-56 | -8.615850e-47 |
| Msa0524800 | Msa0695560 | 0.811231 | 7.763552e-51 | -8.615850e-47 |
| Msa0524800 | Msa0698730 | 0.813623 | 2.330883e-51 | -8.615850e-47 |
| Msa0524800 | Msa0711010 | 0.839041 | 2.008999e-57 | -8.615850e-47 |
| Msa0524800 | Msa0713960 | 0.817292 | 3.556108e-52 | -8.615850e-47 |
| Msa0524800 | Msa0717900 | 0.803903 | 2.791070e-49 | -8.615850e-47 |
| Msa0524800 | Msa0718040 | 0.817751 | 2.803356e-52 | -8.615850e-47 |
| Msa0524800 | Msa0740710 | 0.800875 | 1.173618e-48 | -8.615850e-47 |
| Msa0524800 | Msa0747740 | 0.809485 | 1.849157e-50 | -8.615850e-47 |
| Msa0524800 | Msa0749190 | 0.810742 | 9.907930e-51 | -8.615850e-47 |
| Msa0524800 | Msa0750520 | 0.809830 | 1.558339e-50 | -8.615850e-47 |
| Msa0524800 | Msa0778550 | 0.806985 | 6.305172e-50 | -8.615850e-47 |
| Msa0524800 | Msa0816080 | 0.810088 | 1.371213e-50 | -8.615850e-47 |
| Msa0524800 | Msa0835350 | 0.834878 | 2.323607e-56 | -8.615850e-47 |
| Msa0524800 | Msa0901150 | 0.843995 | 9.940335e-59 | -8.615850e-47 |
| Msa0524800 | Msa0909760 | 0.838970 | 2.094902e-57 | -8.615850e-47 |
| Msa0524800 | Msa0926080 | 0.805186 | 1.507234e-49 | -8.615850e-47 |
| Msa0524800 | Msa0966710 | 0.844254 | 8.469203e-59 | -8.615850e-47 |
| Msa0524800 | Msa1000970 | 0.854308 | 1.342357e-61 | -8.615850e-47 |
| Msa0524800 | Msa1008670 | 0.812523 | 4.062106e-51 | -8.615850e-47 |
| Msa0524800 | Msa1033920 | 0.817873 | 2.630906e-52 | -8.615850e-47 |
| Msa0524800 | Msa1042160 | 0.802701 | 4.951922e-49 | -8.615850e-47 |
| Msa0524800 | Msa1060900 | 0.823171 | 1.598794e-53 | -8.615850e-47 |
| Msa0524800 | Msa1070210 | 0.800198 | 1.612896e-48 | -8.615850e-47 |
| Msa0524800 | Msa1071410 | 0.806228 | 9.110376e-50 | -8.615850e-47 |
| Msa0524800 | Msa1076020 | 0.817356 | 3.440270e-52 | -8.615850e-47 |
| Msa0524800 | Msa1076820 | 0.825143 | 5.503306e-54 | -8.615850e-47 |
| Msa0524800 | Msa1078880 | 0.836020 | 1.194763e-56 | -8.615850e-47 |
| Msa0524800 | Msa1078970 | 0.834793 | 2.440422e-56 | -8.615850e-47 |
| Msa0524800 | Msa1079640 | 0.823783 | 1.150378e-53 | -8.615850e-47 |
| Msa0524800 | Msa1082380 | 0.834645 | 2.658442e-56 | -8.615850e-47 |
| Msa0524800 | Msa1116190 | 0.808283 | 3.342023e-50 | -8.615850e-47 |
| Msa0524800 | Msa1116660 | 0.827472 | 1.535400e-54 | -8.615850e-47 |
| Msa0524800 | Msa1116740 | 0.824750 | 6.814627e-54 | -8.615850e-47 |
| Msa0524800 | Msa1124470 | 0.812014 | 5.246648e-51 | -8.615850e-47 |
| Msa0524800 | Msa1127280 | 0.822659 | 2.103973e-53 | -8.615850e-47 |
| Msa0524800 | Msa1149450 | 0.809325 | 2.000772e-50 | -8.615850e-47 |
| Msa0524800 | Msa1162880 | 0.841526 | 4.504787e-58 | -8.615850e-47 |
| Msa0524800 | Msa1163180 | 0.800803 | 1.214129e-48 | -8.615850e-47 |
| Msa0524800 | Msa1165480 | 0.825561 | 4.382439e-54 | -8.615850e-47 |
| Msa0524800 | Msa1167470 | 0.801699 | 7.959402e-49 | -8.615850e-47 |
| Msa0524800 | Msa1169190 | 0.833924 | 4.033045e-56 | -8.615850e-47 |
| Msa0524800 | Msa1209320 | 0.824708 | 6.972515e-54 | -8.615850e-47 |
| Msa0524800 | Msa1212700 | 0.838751 | 2.387515e-57 | -8.615850e-47 |
| Msa0524800 | Msa1212920 | 0.846627 | 1.928495e-59 | -8.615850e-47 |
| Msa0524800 | Msa1213830 | 0.813280 | 2.772266e-51 | -8.615850e-47 |
| Msa0524800 | Msa1214350 | 0.825205 | 5.322891e-54 | -8.615850e-47 |
| Msa0524800 | Msa1215980 | 0.827736 | 1.326902e-54 | -8.615850e-47 |
| Msa0524800 | Msa1228630 | 0.806436 | 8.234573e-50 | -8.615850e-47 |
| Msa0524800 | Msa1254540 | 0.821120 | 4.780394e-53 | -8.615850e-47 |
| Msa0524800 | Msa1262570 | 0.808718 | 2.698420e-50 | -8.615850e-47 |
| Msa0524800 | Msa1263740 | 0.811353 | 7.304924e-51 | -8.615850e-47 |
| Msa0524800 | Msa1263780 | 0.830096 | 3.559764e-55 | -8.615850e-47 |
| Msa0524800 | Msa1268630 | 0.808945 | 2.413595e-50 | -8.615850e-47 |
| Msa0524800 | Msa1294790 | 0.813061 | 3.096816e-51 | -8.615850e-47 |
| Msa0524800 | Msa1299980 | 0.848566 | 5.649968e-60 | -8.615850e-47 |
| Msa0524800 | Msa1300460 | 0.804464 | 2.133545e-49 | -8.615850e-47 |
| Msa0524800 | Msa1331650 | 0.837922 | 3.904794e-57 | -8.615850e-47 |
| Msa0524800 | Msa1339170 | 0.815808 | 7.646454e-52 | -8.615850e-47 |
| Msa0524800 | Msa1342810 | 0.845162 | 4.823398e-59 | -8.615850e-47 |
| Msa0524800 | Msa1359980 | 0.807431 | 5.071735e-50 | -8.615850e-47 |
| Msa0524800 | Msa1361930 | 0.826122 | 3.225067e-54 | -8.615850e-47 |
| Msa0524800 | Msa1364410 | 0.836455 | 9.264615e-57 | -8.615850e-47 |
| Msa0524800 | Msa1367840 | 0.810809 | 9.582342e-51 | -8.615850e-47 |
| Msa0524800 | Msa1377530 | 0.813278 | 2.775409e-51 | -8.615850e-47 |
| Msa0524800 | Msa1381800 | 0.804667 | 1.935426e-49 | -8.615850e-47 |
| Msa0524800 | Msa1383310 | 0.833158 | 6.262333e-56 | -8.615850e-47 |
| Msa0524800 | Msa1400010 | 0.827535 | 1.482685e-54 | -8.615850e-47 |
| Msa0524800 | Msa1406720 | 0.846293 | 2.379491e-59 | -8.615850e-47 |
| Msa0524800 | Msa1409410 | 0.808752 | 2.654558e-50 | -8.615850e-47 |
| Msa0524800 | Msa1434640 | 0.839831 | 1.252578e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524800 | MtrunA17_Chr3g0138031 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.18e-108 | 306 |
| Msa0524800 | MtrunA17_Chr4g0003701 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 1.64e-55 | 172 |
| Msa0524800 | MtrunA17_Chr4g0063351 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 3.60e-33 | 114 |
| Msa0524800 | MtrunA17_Chr2g0306881 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 6.33e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524800 | AT3G15680.2 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0524800 | AT3G15680.1 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0524800 | AT5G25490.2 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0524800 | AT5G25490.1 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0524800 | AT2G26695.1 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0524800 | AT2G26695.2 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0524800 | AT2G17975.1 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.69e-16 | 73.9 |
Find 86 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3_4:+78345121 | Msa0524800:CDS |
| AGGAGGGACTTGAATAATTT+TGG | 0.217231 | 3_4:+78344748 | None:intergenic |
| CTCTCTCAATTATCTCTTCT+TGG | 0.242787 | 3_4:-78346024 | None:intergenic |
| GAGAAGAGTAATTGAGATTA+AGG | 0.253953 | 3_4:-78344785 | None:intergenic |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3_4:+78345343 | Msa0524800:CDS |
| TTTACTTACCTCACTTAGTT+TGG | 0.293285 | 3_4:-78344884 | None:intergenic |
| CCAGCTAGCTAGGAATCTTT+AGG | 0.320270 | 3_4:+78346129 | Msa0524800:three_prime_UTR |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3_4:+78345097 | Msa0524800:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3_4:-78345818 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3_4:-78345758 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3_4:+78345145 | Msa0524800:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3_4:-78345292 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3_4:+78345394 | Msa0524800:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3_4:+78345386 | Msa0524800:CDS |
| TTATCGTGAACTTCTCAATC+TGG | 0.418523 | 3_4:+78345823 | Msa0524800:exon |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3_4:-78345178 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3_4:-78345199 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3_4:+78345200 | Msa0524800:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3_4:+78345017 | Msa0524800:exon |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3_4:-78345028 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3_4:-78345057 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3_4:-78345269 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3_4:+78345364 | Msa0524800:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3_4:-78345260 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3_4:+78345265 | Msa0524800:CDS |
| CCTAAAGATTCCTAGCTAGC+TGG | 0.477217 | 3_4:-78346129 | None:intergenic |
| TTTCTTGTATCCAGCTAGCT+AGG | 0.477621 | 3_4:+78346119 | Msa0524800:three_prime_UTR |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3_4:+78345276 | Msa0524800:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3_4:-78345400 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3_4:+78345401 | Msa0524800:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3_4:-78345149 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3_4:+78345747 | Msa0524800:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3_4:-78345790 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3_4:-78345060 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3_4:+78345139 | Msa0524800:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3_4:+78345010 | Msa0524800:exon |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3_4:-78345264 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3_4:-78345177 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3_4:-78345291 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3_4:+78345026 | Msa0524800:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3_4:+78345773 | Msa0524800:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3_4:-78345392 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3_4:+78345106 | Msa0524800:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3_4:-78345377 | None:intergenic |
| CTTACCTCACTTAGTTTGGA+AGG | 0.522107 | 3_4:-78344880 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3_4:-78345308 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3_4:-78345401 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3_4:-78345087 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3_4:+78345193 | Msa0524800:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3_4:+78345787 | Msa0524800:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3_4:+78345361 | Msa0524800:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3_4:+78345077 | Msa0524800:CDS |
| CTAGCTAGGAATCTTTAGGT+TGG | 0.539572 | 3_4:+78346133 | Msa0524800:three_prime_UTR |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3_4:+78345214 | Msa0524800:CDS |
| TGGCGCTGATTAGTGTATCT+CGG | 0.545741 | 3_4:+78346179 | Msa0524800:three_prime_UTR |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3_4:-78345184 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3_4:-78345777 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3_4:-78345389 | None:intergenic |
| CTTAGTTTGGAAGGTAGTGA+TGG | 0.553592 | 3_4:-78344871 | None:intergenic |
| AAGAGTAATTGAGATTAAGG+TGG | 0.559698 | 3_4:-78344782 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3_4:+78345413 | Msa0524800:CDS |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3_4:-78345352 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3_4:-78345194 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3_4:-78345131 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3_4:+78345774 | Msa0524800:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3_4:+78345382 | Msa0524800:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3_4:-78345413 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3_4:+78345076 | Msa0524800:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3_4:+78345078 | Msa0524800:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3_4:-78345323 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3_4:-78345314 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3_4:-78345191 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3_4:+78345103 | Msa0524800:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3_4:+78345766 | Msa0524800:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3_4:+78345223 | Msa0524800:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3_4:+78345337 | Msa0524800:CDS |
| CAAGAAGAGATAATTGAGAG+AGG | 0.626553 | 3_4:+78346025 | Msa0524800:three_prime_UTR |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3_4:-78345198 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3_4:-78345176 | None:intergenic |
| ACTACCTTCCAAACTAAGTG+AGG | 0.639319 | 3_4:+78344876 | Msa0524800:five_prime_UTR |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3_4:-78345211 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3_4:+78345100 | Msa0524800:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3_4:-78345207 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3_4:-78345334 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3_4:-78345290 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3_4:-78345399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | - | chr3_4:78345481-78345500 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | - | chr3_4:78345886-78345905 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | - | chr3_4:78345995-78346014 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | + | chr3_4:78345993-78346012 | Msa0524800:intron | 15.0% |
| !! | TATATTATAAGTTCCAAATT+AGG | - | chr3_4:78345481-78345500 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | - | chr3_4:78345886-78345905 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | - | chr3_4:78345995-78346014 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | + | chr3_4:78345993-78346012 | Msa0524800:intron | 15.0% |
| !! | GATACTTCTTATAAATATTG+TGG | + | chr3_4:78345548-78345567 | Msa0524800:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | - | chr3_4:78345579-78345598 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | + | chr3_4:78345577-78345596 | Msa0524800:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | - | chr3_4:78345677-78345696 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | - | chr3_4:78345909-78345928 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | - | chr3_4:78346062-78346081 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | + | chr3_4:78346061-78346080 | Msa0524800:three_prime_UTR | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | + | chr3_4:78346155-78346174 | Msa0524800:three_prime_UTR | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | + | chr3_4:78345548-78345567 | Msa0524800:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | - | chr3_4:78345579-78345598 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | + | chr3_4:78345577-78345596 | Msa0524800:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | - | chr3_4:78345677-78345696 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | - | chr3_4:78345909-78345928 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | - | chr3_4:78346062-78346081 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | + | chr3_4:78346061-78346080 | Msa0524800:three_prime_UTR | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | + | chr3_4:78346155-78346174 | Msa0524800:three_prime_UTR | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | + | chr3_4:78345552-78345571 | Msa0524800:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | - | chr3_4:78345678-78345697 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | + | chr3_4:78346159-78346178 | Msa0524800:three_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | - | chr3_4:78346228-78346247 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | - | chr3_4:78346229-78346248 | None:intergenic | 25.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | + | chr3_4:78345552-78345571 | Msa0524800:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | - | chr3_4:78345678-78345697 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | + | chr3_4:78346159-78346178 | Msa0524800:three_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | - | chr3_4:78346228-78346247 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | - | chr3_4:78346229-78346248 | None:intergenic | 25.0% |
| AAGAGTAATTGAGATTAAGG+TGG | - | chr3_4:78344785-78344804 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | - | chr3_4:78344788-78344807 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | - | chr3_4:78344887-78344906 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | - | chr3_4:78345063-78345082 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | - | chr3_4:78345294-78345313 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | - | chr3_4:78345522-78345541 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | - | chr3_4:78345821-78345840 | None:intergenic | 30.0% | |
| AAGAGTAATTGAGATTAAGG+TGG | - | chr3_4:78344785-78344804 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | - | chr3_4:78344788-78344807 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | - | chr3_4:78344887-78344906 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | - | chr3_4:78345063-78345082 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | - | chr3_4:78345294-78345313 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | - | chr3_4:78345522-78345541 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | - | chr3_4:78345821-78345840 | None:intergenic | 30.0% | |
| TATTGTACTGTTGGAAACTG+TGG | + | chr3_4:78345223-78345242 | Msa0524800:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | - | chr3_4:78345293-78345312 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | - | chr3_4:78345295-78345314 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | - | chr3_4:78345337-78345356 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | + | chr3_4:78345337-78345356 | Msa0524800:CDS | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | - | chr3_4:78345434-78345453 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | + | chr3_4:78345710-78345729 | Msa0524800:intron | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | - | chr3_4:78345715-78345734 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | + | chr3_4:78345715-78345734 | Msa0524800:intron | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | + | chr3_4:78345716-78345735 | Msa0524800:intron | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | + | chr3_4:78345823-78345842 | Msa0524800:exon | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | - | chr3_4:78346027-78346046 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | + | chr3_4:78346025-78346044 | Msa0524800:three_prime_UTR | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | + | chr3_4:78345223-78345242 | Msa0524800:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | - | chr3_4:78345293-78345312 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | - | chr3_4:78345295-78345314 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | - | chr3_4:78345337-78345356 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | + | chr3_4:78345337-78345356 | Msa0524800:CDS | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | - | chr3_4:78345434-78345453 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | + | chr3_4:78345710-78345729 | Msa0524800:intron | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | - | chr3_4:78345715-78345734 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | + | chr3_4:78345715-78345734 | Msa0524800:intron | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | + | chr3_4:78345716-78345735 | Msa0524800:intron | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | + | chr3_4:78345823-78345842 | Msa0524800:exon | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | - | chr3_4:78346027-78346046 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | + | chr3_4:78346025-78346044 | Msa0524800:three_prime_UTR | 35.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | - | chr3_4:78344874-78344893 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | + | chr3_4:78344876-78344895 | Msa0524800:five_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | - | chr3_4:78344883-78344902 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | - | chr3_4:78345060-78345079 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | + | chr3_4:78345100-78345119 | Msa0524800:CDS | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | - | chr3_4:78345134-78345153 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | + | chr3_4:78345343-78345362 | Msa0524800:CDS | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | - | chr3_4:78345467-78345486 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | + | chr3_4:78345465-78345484 | Msa0524800:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | - | chr3_4:78345702-78345721 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | + | chr3_4:78345747-78345766 | Msa0524800:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | - | chr3_4:78345761-78345780 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | + | chr3_4:78346119-78346138 | Msa0524800:three_prime_UTR | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | + | chr3_4:78346133-78346152 | Msa0524800:three_prime_UTR | 40.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | - | chr3_4:78344874-78344893 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | + | chr3_4:78344876-78344895 | Msa0524800:five_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | - | chr3_4:78344883-78344902 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | - | chr3_4:78345060-78345079 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | + | chr3_4:78345100-78345119 | Msa0524800:CDS | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | - | chr3_4:78345134-78345153 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | + | chr3_4:78345343-78345362 | Msa0524800:CDS | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | - | chr3_4:78345467-78345486 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | + | chr3_4:78345465-78345484 | Msa0524800:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | - | chr3_4:78345702-78345721 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | + | chr3_4:78345747-78345766 | Msa0524800:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | - | chr3_4:78345761-78345780 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | + | chr3_4:78346119-78346138 | Msa0524800:three_prime_UTR | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | + | chr3_4:78346133-78346152 | Msa0524800:three_prime_UTR | 40.0% | |
| AGAGAATCTTGCCAACGATG+TGG | + | chr3_4:78345076-78345095 | Msa0524800:CDS | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | + | chr3_4:78345077-78345096 | Msa0524800:CDS | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | + | chr3_4:78345078-78345097 | Msa0524800:CDS | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | + | chr3_4:78345097-78345116 | Msa0524800:CDS | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | + | chr3_4:78345103-78345122 | Msa0524800:CDS | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | + | chr3_4:78345136-78345155 | Msa0524800:CDS | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | - | chr3_4:78345210-78345229 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | - | chr3_4:78345214-78345233 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | + | chr3_4:78345214-78345233 | Msa0524800:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | - | chr3_4:78345326-78345345 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | + | chr3_4:78345346-78345365 | Msa0524800:CDS | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | + | chr3_4:78345766-78345785 | Msa0524800:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | - | chr3_4:78345793-78345812 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | - | chr3_4:78346014-78346033 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | - | chr3_4:78346132-78346151 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | + | chr3_4:78346129-78346148 | Msa0524800:three_prime_UTR | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | + | chr3_4:78346179-78346198 | Msa0524800:three_prime_UTR | 45.0% |
| AGAGAATCTTGCCAACGATG+TGG | + | chr3_4:78345076-78345095 | Msa0524800:CDS | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | + | chr3_4:78345077-78345096 | Msa0524800:CDS | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | + | chr3_4:78345078-78345097 | Msa0524800:CDS | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | + | chr3_4:78345097-78345116 | Msa0524800:CDS | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | + | chr3_4:78345103-78345122 | Msa0524800:CDS | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | + | chr3_4:78345136-78345155 | Msa0524800:CDS | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | - | chr3_4:78345210-78345229 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | - | chr3_4:78345214-78345233 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | + | chr3_4:78345214-78345233 | Msa0524800:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | - | chr3_4:78345326-78345345 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | + | chr3_4:78345346-78345365 | Msa0524800:CDS | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | + | chr3_4:78345766-78345785 | Msa0524800:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | - | chr3_4:78345793-78345812 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | - | chr3_4:78346014-78346033 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | - | chr3_4:78346132-78346151 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | + | chr3_4:78346129-78346148 | Msa0524800:three_prime_UTR | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | + | chr3_4:78346179-78346198 | Msa0524800:three_prime_UTR | 45.0% |
| AGCAGAAAGATGAGCAGACC+AGG | + | chr3_4:78345010-78345029 | Msa0524800:exon | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | + | chr3_4:78345017-78345036 | Msa0524800:exon | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | - | chr3_4:78345090-78345109 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | + | chr3_4:78345139-78345158 | Msa0524800:CDS | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | - | chr3_4:78345152-78345171 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | + | chr3_4:78345175-78345194 | Msa0524800:CDS | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | - | chr3_4:78345267-78345286 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | + | chr3_4:78345276-78345295 | Msa0524800:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | + | chr3_4:78345349-78345368 | Msa0524800:CDS | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | - | chr3_4:78345780-78345799 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | + | chr3_4:78345787-78345806 | Msa0524800:CDS | 50.0% | |
| AGCAGAAAGATGAGCAGACC+AGG | + | chr3_4:78345010-78345029 | Msa0524800:exon | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | + | chr3_4:78345017-78345036 | Msa0524800:exon | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | - | chr3_4:78345090-78345109 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | + | chr3_4:78345139-78345158 | Msa0524800:CDS | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | - | chr3_4:78345152-78345171 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | + | chr3_4:78345175-78345194 | Msa0524800:CDS | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | - | chr3_4:78345267-78345286 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | + | chr3_4:78345276-78345295 | Msa0524800:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | + | chr3_4:78345349-78345368 | Msa0524800:CDS | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | - | chr3_4:78345780-78345799 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | + | chr3_4:78345787-78345806 | Msa0524800:CDS | 50.0% | |
| GACCAGGAGATTGGAACTGC+AGG | + | chr3_4:78345026-78345045 | Msa0524800:CDS | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | - | chr3_4:78345031-78345050 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | + | chr3_4:78345106-78345125 | Msa0524800:CDS | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | + | chr3_4:78345145-78345164 | Msa0524800:CDS | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | - | chr3_4:78345179-78345198 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | - | chr3_4:78345180-78345199 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | - | chr3_4:78345201-78345220 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | + | chr3_4:78345265-78345284 | Msa0524800:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | - | chr3_4:78345272-78345291 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | - | chr3_4:78345311-78345330 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | - | chr3_4:78345317-78345336 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | - | chr3_4:78345355-78345374 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | - | chr3_4:78345416-78345435 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | + | chr3_4:78345774-78345793 | Msa0524800:CDS | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | + | chr3_4:78345026-78345045 | Msa0524800:CDS | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | - | chr3_4:78345031-78345050 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | + | chr3_4:78345106-78345125 | Msa0524800:CDS | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | + | chr3_4:78345145-78345164 | Msa0524800:CDS | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | - | chr3_4:78345179-78345198 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | - | chr3_4:78345180-78345199 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | - | chr3_4:78345201-78345220 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | + | chr3_4:78345265-78345284 | Msa0524800:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | - | chr3_4:78345272-78345291 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | - | chr3_4:78345311-78345330 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | - | chr3_4:78345317-78345336 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | - | chr3_4:78345355-78345374 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | - | chr3_4:78345416-78345435 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | + | chr3_4:78345774-78345793 | Msa0524800:CDS | 55.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | - | chr3_4:78345181-78345200 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | - | chr3_4:78345187-78345206 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | - | chr3_4:78345202-78345221 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | + | chr3_4:78345200-78345219 | Msa0524800:CDS | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | - | chr3_4:78345263-78345282 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | - | chr3_4:78345402-78345421 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | - | chr3_4:78345403-78345422 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | - | chr3_4:78345404-78345423 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | + | chr3_4:78345413-78345432 | Msa0524800:CDS | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | + | chr3_4:78345773-78345792 | Msa0524800:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | - | chr3_4:78345181-78345200 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | - | chr3_4:78345187-78345206 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | - | chr3_4:78345202-78345221 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | + | chr3_4:78345200-78345219 | Msa0524800:CDS | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | - | chr3_4:78345263-78345282 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | - | chr3_4:78345402-78345421 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | - | chr3_4:78345403-78345422 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | - | chr3_4:78345404-78345423 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | + | chr3_4:78345413-78345432 | Msa0524800:CDS | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | + | chr3_4:78345773-78345792 | Msa0524800:CDS | 60.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | + | chr3_4:78345124-78345143 | Msa0524800:CDS | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | - | chr3_4:78345197-78345216 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | + | chr3_4:78345358-78345377 | Msa0524800:CDS | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | + | chr3_4:78345394-78345413 | Msa0524800:CDS | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | + | chr3_4:78345401-78345420 | Msa0524800:CDS | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | + | chr3_4:78345124-78345143 | Msa0524800:CDS | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | - | chr3_4:78345197-78345216 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | + | chr3_4:78345358-78345377 | Msa0524800:CDS | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | + | chr3_4:78345394-78345413 | Msa0524800:CDS | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | + | chr3_4:78345401-78345420 | Msa0524800:CDS | 65.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | + | chr3_4:78345121-78345140 | Msa0524800:CDS | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | - | chr3_4:78345194-78345213 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | + | chr3_4:78345193-78345212 | Msa0524800:CDS | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | + | chr3_4:78345361-78345380 | Msa0524800:CDS | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | - | chr3_4:78345380-78345399 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | - | chr3_4:78345392-78345411 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | - | chr3_4:78345395-78345414 | None:intergenic | 70.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | + | chr3_4:78345121-78345140 | Msa0524800:CDS | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | - | chr3_4:78345194-78345213 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | + | chr3_4:78345193-78345212 | Msa0524800:CDS | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | + | chr3_4:78345361-78345380 | Msa0524800:CDS | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | - | chr3_4:78345380-78345399 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | - | chr3_4:78345392-78345411 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | - | chr3_4:78345395-78345414 | None:intergenic | 70.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | + | chr3_4:78345382-78345401 | Msa0524800:CDS | 75.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | + | chr3_4:78345382-78345401 | Msa0524800:CDS | 75.0% | |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | + | chr3_4:78345364-78345383 | Msa0524800:CDS | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | + | chr3_4:78345386-78345405 | Msa0524800:CDS | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | + | chr3_4:78345364-78345383 | Msa0524800:CDS | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | + | chr3_4:78345386-78345405 | Msa0524800:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78344762 | 78346284 | 78344762 | ID=Msa0524800;Name=Msa0524800 |
| chr3_4 | mRNA | 78344762 | 78346284 | 78344762 | ID=Msa0524800-mRNA-1;Parent=Msa0524800;Name=Msa0524800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=150|1|1|1|0.33|0.25|4|283|171 |
| chr3_4 | exon | 78344762 | 78344897 | 78344762 | ID=Msa0524800-mRNA-1:exon:23205;Parent=Msa0524800-mRNA-1 |
| chr3_4 | exon | 78345005 | 78345434 | 78345005 | ID=Msa0524800-mRNA-1:exon:23206;Parent=Msa0524800-mRNA-1 |
| chr3_4 | exon | 78345732 | 78345844 | 78345732 | ID=Msa0524800-mRNA-1:exon:23207;Parent=Msa0524800-mRNA-1 |
| chr3_4 | exon | 78346015 | 78346284 | 78346015 | ID=Msa0524800-mRNA-1:exon:23208;Parent=Msa0524800-mRNA-1 |
| chr3_4 | five_prime_UTR | 78344762 | 78344897 | 78344762 | ID=Msa0524800-mRNA-1:five_prime_utr;Parent=Msa0524800-mRNA-1 |
| chr3_4 | five_prime_UTR | 78345005 | 78345018 | 78345005 | ID=Msa0524800-mRNA-1:five_prime_utr;Parent=Msa0524800-mRNA-1 |
| chr3_4 | CDS | 78345019 | 78345434 | 78345019 | ID=Msa0524800-mRNA-1:cds;Parent=Msa0524800-mRNA-1 |
| chr3_4 | CDS | 78345732 | 78345831 | 78345732 | ID=Msa0524800-mRNA-1:cds;Parent=Msa0524800-mRNA-1 |
| chr3_4 | three_prime_UTR | 78345832 | 78345844 | 78345832 | ID=Msa0524800-mRNA-1:three_prime_utr;Parent=Msa0524800-mRNA-1 |
| chr3_4 | three_prime_UTR | 78346015 | 78346284 | 78346015 | ID=Msa0524800-mRNA-1:three_prime_utr;Parent=Msa0524800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
