Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092940 | XP_003603176.1 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 9.03e-100 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092940 | sp|Q8VZH2|APM1_ARATH | 71.154 | 156 | 45 | 0 | 1 | 156 | 1 | 156 | 2.76e-76 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092940 | G7J8C0 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 4.31e-100 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0092940 | 0.801573 | 8.446518e-49 | -8.615850e-47 |
| Msa0041690 | Msa0092940 | 0.811754 | 5.977225e-51 | -8.615850e-47 |
| Msa0047640 | Msa0092940 | 0.805840 | 1.098931e-49 | -8.615850e-47 |
| Msa0054530 | Msa0092940 | 0.808802 | 2.589257e-50 | -8.615850e-47 |
| Msa0092940 | Msa0137540 | 0.804954 | 1.685941e-49 | -8.615850e-47 |
| Msa0092940 | Msa0307860 | 0.803950 | 2.729720e-49 | -8.615850e-47 |
| Msa0092940 | Msa0363810 | 0.811615 | 6.408769e-51 | -8.615850e-47 |
| Msa0092940 | Msa0395980 | 0.801195 | 1.009727e-48 | -8.615850e-47 |
| Msa0092940 | Msa0423840 | 0.809148 | 2.183876e-50 | -8.615850e-47 |
| Msa0092940 | Msa0431410 | 0.851913 | 6.511166e-61 | -8.615850e-47 |
| Msa0092940 | Msa0511150 | 0.825824 | 3.797026e-54 | -8.615850e-47 |
| Msa0092940 | Msa0597770 | 0.823917 | 1.070012e-53 | -8.615850e-47 |
| Msa0092940 | Msa0626270 | 0.834039 | 3.773028e-56 | -8.615850e-47 |
| Msa0092940 | Msa0664540 | 0.807969 | 3.899104e-50 | -8.615850e-47 |
| Msa0092940 | Msa0689760 | 0.810891 | 9.199678e-51 | -8.615850e-47 |
| Msa0092940 | Msa0698100 | 0.819489 | 1.130562e-52 | -8.615850e-47 |
| Msa0092940 | Msa0716860 | 0.807291 | 5.430902e-50 | -8.615850e-47 |
| Msa0092940 | Msa0760770 | 0.800973 | 1.120844e-48 | -8.615850e-47 |
| Msa0092940 | Msa0789560 | 0.802450 | 5.576997e-49 | -8.615850e-47 |
| Msa0092940 | Msa0790410 | 0.808224 | 3.440730e-50 | -8.615850e-47 |
| Msa0092940 | Msa0865620 | 0.805136 | 1.543964e-49 | -8.615850e-47 |
| Msa0092940 | Msa0969330 | 0.815275 | 1.004857e-51 | -8.615850e-47 |
| Msa0092940 | Msa1031390 | 0.808858 | 2.519119e-50 | -8.615850e-47 |
| Msa0092940 | Msa1095790 | 0.866442 | 2.843715e-65 | -8.615850e-47 |
| Msa0092940 | Msa1127540 | 0.840508 | 8.333879e-58 | -8.615850e-47 |
| Msa0092940 | Msa1211340 | 0.811419 | 7.066419e-51 | -8.615850e-47 |
| Msa0092940 | Msa1254620 | 0.830051 | 3.650095e-55 | -8.615850e-47 |
| Msa0092940 | Msa1259640 | 0.805374 | 1.376925e-49 | -8.615850e-47 |
| Msa0092940 | Msa1329790 | 0.804423 | 2.176060e-49 | -8.615850e-47 |
| Msa0092940 | Msa1344310 | 0.801626 | 8.238132e-49 | -8.615850e-47 |
| Msa0092940 | Msa1366550 | 0.804337 | 2.267352e-49 | -8.615850e-47 |
| Msa0092940 | Msa1393820 | 0.807608 | 4.650898e-50 | -8.615850e-47 |
| Msa0092940 | Msa1411000 | 0.807964 | 3.908741e-50 | -8.615850e-47 |
| Msa0092940 | Msa1411500 | 0.801105 | 1.053478e-48 | -8.615850e-47 |
| Msa0092940 | Msa1420250 | 0.809166 | 2.164285e-50 | -8.615850e-47 |
| Msa0092940 | Msa1426910 | 0.817085 | 3.958773e-52 | -8.615850e-47 |
| Msa0092940 | Msa1435260 | 0.803081 | 4.132411e-49 | -8.615850e-47 |
| Msa0092940 | Msa1443310 | 0.825345 | 4.930397e-54 | -8.615850e-47 |
| Msa0092940 | Msa1459910 | 0.811424 | 7.050858e-51 | -8.615850e-47 |
| Msa0092940 | Msa1460880 | 0.813643 | 2.307590e-51 | -8.615850e-47 |
| Msa0092940 | Msa1464370 | 0.817723 | 2.843811e-52 | -8.615850e-47 |
| Msa0092940 | Msa1467000 | 0.802905 | 4.493003e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092940 | MtrunA17_Chr3g0135971 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 8.30e-104 | 318 |
| Msa0092940 | MtrunA17_Chr8g0343081 | 54.487 | 156 | 67 | 2 | 1 | 156 | 7 | 158 | 2.24e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092940 | AT4G33090.1 | 71.154 | 156 | 45 | 0 | 1 | 156 | 1 | 156 | 2.81e-77 | 248 |
Find 56 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTTGGAACAGCGAATT+TGG | 0.186692 | 1_2:-75704226 | None:intergenic |
| ATTTGAAGATGATGAGATTT+TGG | 0.287630 | 1_2:+75704525 | Msa0092940:CDS |
| CACTAATCATGATTCCTCTA+AGG | 0.309827 | 1_2:+75704389 | Msa0092940:CDS |
| CCAGGCGATGCTTTCCTTGT+TGG | 0.313536 | 1_2:+75705432 | Msa0092940:CDS |
| AAAACTGTGAAGACGAAGTT+TGG | 0.321780 | 1_2:+75706102 | Msa0092940:CDS |
| GAATCTGTCGCATAAGAAAA+TGG | 0.360619 | 1_2:+75704176 | Msa0092940:exon |
| CAGGCGATGCTTTCCTTGTT+GGG | 0.367914 | 1_2:+75705433 | Msa0092940:CDS |
| AGCATTGAGAACGATGAAAT+TGG | 0.382062 | 1_2:-75704331 | None:intergenic |
| AAACGACATTCGACGAGGTC+TGG | 0.393141 | 1_2:-75704267 | None:intergenic |
| TGGGTTTCGGCCTTTGTTGT+TGG | 0.393160 | 1_2:-75706023 | None:intergenic |
| ATTGAAAGTAAGTACCTTAG+AGG | 0.402691 | 1_2:-75704403 | None:intergenic |
| CTCGTCGAATGTCGTTTCTC+TGG | 0.408745 | 1_2:+75704273 | Msa0092940:CDS |
| ACAATATCCAAAGTGGGTTT+CGG | 0.410063 | 1_2:-75706036 | None:intergenic |
| ATCTATTTAAAGAGCAGCTT+CGG | 0.413207 | 1_2:+75704111 | Msa0092940:five_prime_UTR |
| TAATGGTGAGAAGAAGAATA+TGG | 0.414984 | 1_2:+75705382 | Msa0092940:CDS |
| TGGTAGTGGTGACGATGTTA+AGG | 0.419984 | 1_2:-75704311 | None:intergenic |
| GAGAAAATACCTACCGGATT+GGG | 0.421411 | 1_2:+75704562 | Msa0092940:CDS |
| AGTCGAATGTCGTAACGGTT+TGG | 0.424820 | 1_2:-75704240 | None:intergenic |
| ACCTACCGGATTGGGTGTAT+TGG | 0.433112 | 1_2:+75704570 | Msa0092940:CDS |
| GGTGGCCGTGGGTTGGTCTT+CGG | 0.438616 | 1_2:+75706059 | Msa0092940:CDS |
| CGGTTTGGAACAGCGAATTT+GGG | 0.440056 | 1_2:-75704225 | None:intergenic |
| GGTGACGATGTTAAGGTTAA+CGG | 0.443284 | 1_2:-75704304 | None:intergenic |
| AGTAGAGTCGAAGTGTGAAT+TGG | 0.446548 | 1_2:+75705968 | Msa0092940:intron |
| TTTGGATATTGTGGTGGCCG+TGG | 0.453130 | 1_2:+75706047 | Msa0092940:CDS |
| TTGGGATGAGCCTGCTTGCA+AGG | 0.460422 | 1_2:+75705451 | Msa0092940:CDS |
| TGAGAAAATACCTACCGGAT+TGG | 0.472935 | 1_2:+75704561 | Msa0092940:CDS |
| AGAGTCGAAGTGTGAATTGG+TGG | 0.473445 | 1_2:+75705971 | Msa0092940:intron |
| TGCAGCAAATATGAGCATAA+TGG | 0.477955 | 1_2:+75705365 | Msa0092940:intron |
| GTATTGGCTATTCAGTTTGA+AGG | 0.495191 | 1_2:+75704586 | Msa0092940:CDS |
| ACAAAGGCCGAAACCCACTT+TGG | 0.509682 | 1_2:+75706029 | Msa0092940:CDS |
| GTCGAAGTGTGAATTGGTGG+AGG | 0.522452 | 1_2:+75705974 | Msa0092940:CDS |
| AAGCATCGCCTGGCATCAGC+TGG | 0.527673 | 1_2:-75705422 | None:intergenic |
| ATATTGTGGTGGCCGTGGGT+TGG | 0.531856 | 1_2:+75706052 | Msa0092940:CDS |
| AAGAAAATGGATCAATTCAA+AGG | 0.534213 | 1_2:+75704189 | Msa0092940:exon |
| AGTTTGAACCAGCTGATGCC+AGG | 0.540630 | 1_2:+75705414 | Msa0092940:CDS |
| ATACTGAATGATAGAATGAA+AGG | 0.546181 | 1_2:+75704610 | Msa0092940:CDS |
| TTGGATATTGTGGTGGCCGT+GGG | 0.547071 | 1_2:+75706048 | Msa0092940:CDS |
| AATAGCCAATACACCCAATC+CGG | 0.551293 | 1_2:-75704575 | None:intergenic |
| AAGAGCAGAGCCAACAACAA+AGG | 0.564673 | 1_2:+75706013 | Msa0092940:CDS |
| GAAACCCACTTTGGATATTG+TGG | 0.577455 | 1_2:+75706038 | Msa0092940:CDS |
| CCAACAAGGAAAGCATCGCC+TGG | 0.578563 | 1_2:-75705432 | None:intergenic |
| TTGGTCTTCGGTAACGATGG+TGG | 0.580054 | 1_2:+75706071 | Msa0092940:CDS |
| GGGTTGGTCTTCGGTAACGA+TGG | 0.609961 | 1_2:+75706068 | Msa0092940:CDS |
| ACCCACTTTGGATATTGTGG+TGG | 0.610609 | 1_2:+75706041 | Msa0092940:CDS |
| ATCATGATTAGTGAAAGAAA+CGG | 0.621284 | 1_2:-75704379 | None:intergenic |
| CAAGCAGGCTCATCCCAACA+AGG | 0.621315 | 1_2:-75705446 | None:intergenic |
| CTTCGGTAACGATGGTGGAG+AGG | 0.621702 | 1_2:+75706076 | Msa0092940:CDS |
| GTTTGAGTCGAATGTCGTAA+CGG | 0.623074 | 1_2:-75704245 | None:intergenic |
| GAGAACGATGAAATTGGTAG+TGG | 0.630665 | 1_2:-75704325 | None:intergenic |
| GGCCACCACAATATCCAAAG+TGG | 0.631742 | 1_2:-75706043 | None:intergenic |
| AGAAACGGCGTCGTTAGCGA+CGG | 0.649627 | 1_2:-75704364 | None:intergenic |
| GCCACCACAATATCCAAAGT+GGG | 0.652709 | 1_2:-75706042 | None:intergenic |
| GCCAATACACCCAATCCGGT+AGG | 0.683021 | 1_2:-75704571 | None:intergenic |
| ACAGCGAATTTGGGAAGACG+AGG | 0.687895 | 1_2:-75704216 | None:intergenic |
| CAGAGAAACGACATTCGACG+AGG | 0.707634 | 1_2:-75704272 | None:intergenic |
| CGTTACCGAAGACCAACCCA+CGG | 0.714094 | 1_2:-75706064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAACATATTTTATTTAAC+CGG | + | chr1_2:75705283-75705302 | Msa0092940:intron | 10.0% |
| !!! | TAAAACATATTTTATTTAAC+CGG | + | chr1_2:75705283-75705302 | Msa0092940:intron | 10.0% |
| !! | TTACATAAGCTATTTATATT+GGG | + | chr1_2:75704838-75704857 | Msa0092940:intron | 15.0% |
| !!! | ATTATTTATTAGTCTCTAAA+GGG | + | chr1_2:75705177-75705196 | Msa0092940:intron | 15.0% |
| !!! | ACTTAAAAGTTTTCAAATTA+GGG | + | chr1_2:75705209-75705228 | Msa0092940:intron | 15.0% |
| !! | AAATTGAAAAGAATTTATGT+AGG | + | chr1_2:75705236-75705255 | Msa0092940:intron | 15.0% |
| !! | GTAACAAAAAATTGATTATT+TGG | + | chr1_2:75705794-75705813 | Msa0092940:intron | 15.0% |
| !!! | TAACATAATTTTAGCATTAT+TGG | - | chr1_2:75705863-75705882 | None:intergenic | 15.0% |
| !! | TTACATAAGCTATTTATATT+GGG | + | chr1_2:75704838-75704857 | Msa0092940:intron | 15.0% |
| !!! | ATTATTTATTAGTCTCTAAA+GGG | + | chr1_2:75705177-75705196 | Msa0092940:intron | 15.0% |
| !!! | ACTTAAAAGTTTTCAAATTA+GGG | + | chr1_2:75705209-75705228 | Msa0092940:intron | 15.0% |
| !! | AAATTGAAAAGAATTTATGT+AGG | + | chr1_2:75705236-75705255 | Msa0092940:intron | 15.0% |
| !! | GTAACAAAAAATTGATTATT+TGG | + | chr1_2:75705794-75705813 | Msa0092940:intron | 15.0% |
| !!! | TAACATAATTTTAGCATTAT+TGG | - | chr1_2:75705863-75705882 | None:intergenic | 15.0% |
| !!! | TTTGTGTTTTTTGTTTGTTT+CGG | + | chr1_2:75704449-75704468 | Msa0092940:intron | 20.0% |
| !!! | TCAAATAATTCAACTTTTGA+AGG | - | chr1_2:75704511-75704530 | None:intergenic | 20.0% |
| !!! | TTTTTACCATTGATTTTTAG+AGG | + | chr1_2:75704731-75704750 | Msa0092940:intron | 20.0% |
| !! | CTTACATAAGCTATTTATAT+TGG | + | chr1_2:75704837-75704856 | Msa0092940:intron | 20.0% |
| !!! | GATTATTTATTAGTCTCTAA+AGG | + | chr1_2:75705176-75705195 | Msa0092940:intron | 20.0% |
| !!! | CACTTAAAAGTTTTCAAATT+AGG | + | chr1_2:75705208-75705227 | Msa0092940:intron | 20.0% |
| !! | AATTCCTGTAAAATAAATTC+CGG | - | chr1_2:75705263-75705282 | None:intergenic | 20.0% |
| !!! | AATAATAACTTACTTTTTGG+AGG | - | chr1_2:75705903-75705922 | None:intergenic | 20.0% |
| !! | TCCAAAAAGTAAGTTATTAT+TGG | + | chr1_2:75705902-75705921 | Msa0092940:intron | 20.0% |
| !!! | TCCAATAATAACTTACTTTT+TGG | - | chr1_2:75705906-75705925 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTTGTTTGTTT+CGG | + | chr1_2:75704449-75704468 | Msa0092940:intron | 20.0% |
| !!! | TCAAATAATTCAACTTTTGA+AGG | - | chr1_2:75704511-75704530 | None:intergenic | 20.0% |
| !!! | TTTTTACCATTGATTTTTAG+AGG | + | chr1_2:75704731-75704750 | Msa0092940:intron | 20.0% |
| !! | CTTACATAAGCTATTTATAT+TGG | + | chr1_2:75704837-75704856 | Msa0092940:intron | 20.0% |
| !!! | GATTATTTATTAGTCTCTAA+AGG | + | chr1_2:75705176-75705195 | Msa0092940:intron | 20.0% |
| !!! | CACTTAAAAGTTTTCAAATT+AGG | + | chr1_2:75705208-75705227 | Msa0092940:intron | 20.0% |
| !! | AATTCCTGTAAAATAAATTC+CGG | - | chr1_2:75705263-75705282 | None:intergenic | 20.0% |
| !!! | AATAATAACTTACTTTTTGG+AGG | - | chr1_2:75705903-75705922 | None:intergenic | 20.0% |
| !! | TCCAAAAAGTAAGTTATTAT+TGG | + | chr1_2:75705902-75705921 | Msa0092940:intron | 20.0% |
| !!! | TCCAATAATAACTTACTTTT+TGG | - | chr1_2:75705906-75705925 | None:intergenic | 20.0% |
| !!! | CGATATCAATTTTAACAAAG+CGG | + | chr1_2:75704150-75704169 | Msa0092940:five_prime_UTR | 25.0% |
| ! | AAGAAAATGGATCAATTCAA+AGG | + | chr1_2:75704189-75704208 | Msa0092940:exon | 25.0% |
| ! | ATCATGATTAGTGAAAGAAA+CGG | - | chr1_2:75704382-75704401 | None:intergenic | 25.0% |
| !! | ATTTGAAGATGATGAGATTT+TGG | + | chr1_2:75704525-75704544 | Msa0092940:CDS | 25.0% |
| ! | ATACTGAATGATAGAATGAA+AGG | + | chr1_2:75704610-75704629 | Msa0092940:CDS | 25.0% |
| !! | TCCAAAGCTAAATAATTTTC+TGG | + | chr1_2:75704680-75704699 | Msa0092940:intron | 25.0% |
| !! | TCCAGAAAATTATTTAGCTT+TGG | - | chr1_2:75704684-75704703 | None:intergenic | 25.0% |
| !! | CTTAATCCTCTAAAAATCAA+TGG | - | chr1_2:75704740-75704759 | None:intergenic | 25.0% |
| !!! | CATTGATTTTTAGAGGATTA+AGG | + | chr1_2:75704738-75704757 | Msa0092940:intron | 25.0% |
| ! | ACTTAAAAGAAAATGAGAAG+GGG | - | chr1_2:75705082-75705101 | None:intergenic | 25.0% |
| ! | CACTTAAAAGAAAATGAGAA+GGG | - | chr1_2:75705083-75705102 | None:intergenic | 25.0% |
| ! | TCACTTAAAAGAAAATGAGA+AGG | - | chr1_2:75705084-75705103 | None:intergenic | 25.0% |
| !!! | ATTTCCTATTTTGCTTTTAC+AGG | + | chr1_2:75705153-75705172 | Msa0092940:intron | 25.0% |
| !!! | TTTCCTATTTTGCTTTTACA+GGG | + | chr1_2:75705154-75705173 | Msa0092940:intron | 25.0% |
| ! | CAAACAAACAATTTAGAAAC+CGG | - | chr1_2:75705305-75705324 | None:intergenic | 25.0% |
| ! | TATGATACATAGTAACCAAT+AGG | - | chr1_2:75705333-75705352 | None:intergenic | 25.0% |
| ! | ATTGGTTACTATGTATCATA+TGG | + | chr1_2:75705333-75705352 | Msa0092940:intron | 25.0% |
| ! | TTGGTTACTATGTATCATAT+GGG | + | chr1_2:75705334-75705353 | Msa0092940:intron | 25.0% |
| !! | TCAAATAATAAGCTTCCTTT+TGG | + | chr1_2:75705549-75705568 | Msa0092940:intron | 25.0% |
| ! | CATCATTAGTTAGAATGTTA+TGG | - | chr1_2:75705596-75705615 | None:intergenic | 25.0% |
| ! | NNNNNNNCACGGTGAATAAT+GGG | - | chr1_2:75705636-75705655 | None:intergenic | 25.0% |
| ! | NNNNNNNNCACGGTGAATAA+TGG | - | chr1_2:75705637-75705656 | None:intergenic | 25.0% |
| !!! | CGATATCAATTTTAACAAAG+CGG | + | chr1_2:75704150-75704169 | Msa0092940:five_prime_UTR | 25.0% |
| ! | AAGAAAATGGATCAATTCAA+AGG | + | chr1_2:75704189-75704208 | Msa0092940:exon | 25.0% |
| ! | ATCATGATTAGTGAAAGAAA+CGG | - | chr1_2:75704382-75704401 | None:intergenic | 25.0% |
| !! | ATTTGAAGATGATGAGATTT+TGG | + | chr1_2:75704525-75704544 | Msa0092940:CDS | 25.0% |
| ! | ATACTGAATGATAGAATGAA+AGG | + | chr1_2:75704610-75704629 | Msa0092940:CDS | 25.0% |
| !! | TCCAAAGCTAAATAATTTTC+TGG | + | chr1_2:75704680-75704699 | Msa0092940:intron | 25.0% |
| !! | TCCAGAAAATTATTTAGCTT+TGG | - | chr1_2:75704684-75704703 | None:intergenic | 25.0% |
| !! | CTTAATCCTCTAAAAATCAA+TGG | - | chr1_2:75704740-75704759 | None:intergenic | 25.0% |
| !!! | CATTGATTTTTAGAGGATTA+AGG | + | chr1_2:75704738-75704757 | Msa0092940:intron | 25.0% |
| ! | ACTTAAAAGAAAATGAGAAG+GGG | - | chr1_2:75705082-75705101 | None:intergenic | 25.0% |
| ! | CACTTAAAAGAAAATGAGAA+GGG | - | chr1_2:75705083-75705102 | None:intergenic | 25.0% |
| ! | TCACTTAAAAGAAAATGAGA+AGG | - | chr1_2:75705084-75705103 | None:intergenic | 25.0% |
| !!! | ATTTCCTATTTTGCTTTTAC+AGG | + | chr1_2:75705153-75705172 | Msa0092940:intron | 25.0% |
| !!! | TTTCCTATTTTGCTTTTACA+GGG | + | chr1_2:75705154-75705173 | Msa0092940:intron | 25.0% |
| ! | CAAACAAACAATTTAGAAAC+CGG | - | chr1_2:75705305-75705324 | None:intergenic | 25.0% |
| ! | TATGATACATAGTAACCAAT+AGG | - | chr1_2:75705333-75705352 | None:intergenic | 25.0% |
| ! | ATTGGTTACTATGTATCATA+TGG | + | chr1_2:75705333-75705352 | Msa0092940:intron | 25.0% |
| ! | TTGGTTACTATGTATCATAT+GGG | + | chr1_2:75705334-75705353 | Msa0092940:intron | 25.0% |
| !! | TCAAATAATAAGCTTCCTTT+TGG | + | chr1_2:75705549-75705568 | Msa0092940:intron | 25.0% |
| ! | CATCATTAGTTAGAATGTTA+TGG | - | chr1_2:75705596-75705615 | None:intergenic | 25.0% |
| ! | NNNNNNNCACGGTGAATAAT+GGG | - | chr1_2:75705636-75705655 | None:intergenic | 25.0% |
| ! | NNNNNNNNCACGGTGAATAA+TGG | - | chr1_2:75705637-75705656 | None:intergenic | 25.0% |
| ATCTATTTAAAGAGCAGCTT+CGG | + | chr1_2:75704111-75704130 | Msa0092940:five_prime_UTR | 30.0% | |
| ATTGAAAGTAAGTACCTTAG+AGG | - | chr1_2:75704406-75704425 | None:intergenic | 30.0% | |
| ! | TAATCGATGAATGTTTCTGT+AGG | + | chr1_2:75704477-75704496 | Msa0092940:intron | 30.0% |
| !! | TTTTCTGAGAAAATACCTAC+CGG | + | chr1_2:75704556-75704575 | Msa0092940:CDS | 30.0% |
| ! | GAATGAAAGGTTTTTACAGA+AGG | + | chr1_2:75704623-75704642 | Msa0092940:CDS | 30.0% |
| GTATATGCTATAAGCTATCT+TGG | + | chr1_2:75704910-75704929 | Msa0092940:intron | 30.0% | |
| !! | CATTTGTCATAAGCTTTTTC+AGG | - | chr1_2:75704953-75704972 | None:intergenic | 30.0% |
| CTTAAAAGAAAATGAGAAGG+GGG | - | chr1_2:75705081-75705100 | None:intergenic | 30.0% | |
| ! | AACTCTTCAAGTTTATTACG+TGG | + | chr1_2:75705111-75705130 | Msa0092940:intron | 30.0% |
| ! | ACTCTTCAAGTTTATTACGT+GGG | + | chr1_2:75705112-75705131 | Msa0092940:intron | 30.0% |
| AATCCCTGTAAAAGCAAAAT+AGG | - | chr1_2:75705160-75705179 | None:intergenic | 30.0% | |
| GAAAAGAATTTATGTAGGAC+CGG | + | chr1_2:75705241-75705260 | Msa0092940:intron | 30.0% | |
| TAATGGTGAGAAGAAGAATA+TGG | + | chr1_2:75705382-75705401 | Msa0092940:CDS | 30.0% | |
| AACAAAAGGTTCGTTGAAAA+GGG | - | chr1_2:75705497-75705516 | None:intergenic | 30.0% | |
| AAACAAAAGGTTCGTTGAAA+AGG | - | chr1_2:75705498-75705517 | None:intergenic | 30.0% | |
| AGAAAATCATCTCTTCTTGA+GGG | - | chr1_2:75705930-75705949 | None:intergenic | 30.0% | |
| TAGAAAATCATCTCTTCTTG+AGG | - | chr1_2:75705931-75705950 | None:intergenic | 30.0% | |
| ATCTATTTAAAGAGCAGCTT+CGG | + | chr1_2:75704111-75704130 | Msa0092940:five_prime_UTR | 30.0% | |
| ATTGAAAGTAAGTACCTTAG+AGG | - | chr1_2:75704406-75704425 | None:intergenic | 30.0% | |
| ! | TAATCGATGAATGTTTCTGT+AGG | + | chr1_2:75704477-75704496 | Msa0092940:intron | 30.0% |
| !! | TTTTCTGAGAAAATACCTAC+CGG | + | chr1_2:75704556-75704575 | Msa0092940:CDS | 30.0% |
| ! | GAATGAAAGGTTTTTACAGA+AGG | + | chr1_2:75704623-75704642 | Msa0092940:CDS | 30.0% |
| GTATATGCTATAAGCTATCT+TGG | + | chr1_2:75704910-75704929 | Msa0092940:intron | 30.0% | |
| !! | CATTTGTCATAAGCTTTTTC+AGG | - | chr1_2:75704953-75704972 | None:intergenic | 30.0% |
| CTTAAAAGAAAATGAGAAGG+GGG | - | chr1_2:75705081-75705100 | None:intergenic | 30.0% | |
| ! | AACTCTTCAAGTTTATTACG+TGG | + | chr1_2:75705111-75705130 | Msa0092940:intron | 30.0% |
| ! | ACTCTTCAAGTTTATTACGT+GGG | + | chr1_2:75705112-75705131 | Msa0092940:intron | 30.0% |
| AATCCCTGTAAAAGCAAAAT+AGG | - | chr1_2:75705160-75705179 | None:intergenic | 30.0% | |
| GAAAAGAATTTATGTAGGAC+CGG | + | chr1_2:75705241-75705260 | Msa0092940:intron | 30.0% | |
| TAATGGTGAGAAGAAGAATA+TGG | + | chr1_2:75705382-75705401 | Msa0092940:CDS | 30.0% | |
| AACAAAAGGTTCGTTGAAAA+GGG | - | chr1_2:75705497-75705516 | None:intergenic | 30.0% | |
| AAACAAAAGGTTCGTTGAAA+AGG | - | chr1_2:75705498-75705517 | None:intergenic | 30.0% | |
| AGAAAATCATCTCTTCTTGA+GGG | - | chr1_2:75705930-75705949 | None:intergenic | 30.0% | |
| TAGAAAATCATCTCTTCTTG+AGG | - | chr1_2:75705931-75705950 | None:intergenic | 30.0% | |
| GAATCTGTCGCATAAGAAAA+TGG | + | chr1_2:75704176-75704195 | Msa0092940:exon | 35.0% | |
| ! | AGCATTGAGAACGATGAAAT+TGG | - | chr1_2:75704334-75704353 | None:intergenic | 35.0% |
| CACTAATCATGATTCCTCTA+AGG | + | chr1_2:75704389-75704408 | Msa0092940:CDS | 35.0% | |
| !! | AGATGATGAGATTTTGGTGT+TGG | + | chr1_2:75704531-75704550 | Msa0092940:CDS | 35.0% |
| !! | GTATTGGCTATTCAGTTTGA+AGG | + | chr1_2:75704586-75704605 | Msa0092940:CDS | 35.0% |
| AGAGTTTGATGAGACTCTTT+GGG | - | chr1_2:75704987-75705006 | None:intergenic | 35.0% | |
| ! | TTCTTTTTACAAACGTCCCT+CGG | - | chr1_2:75705056-75705075 | None:intergenic | 35.0% |
| !!! | AGGACCGGAATTTATTTTAC+AGG | + | chr1_2:75705256-75705275 | Msa0092940:intron | 35.0% |
| TGTTTGTTTGAGAGTCCTAT+TGG | + | chr1_2:75705315-75705334 | Msa0092940:intron | 35.0% | |
| TGCAGCAAATATGAGCATAA+TGG | + | chr1_2:75705365-75705384 | Msa0092940:intron | 35.0% | |
| AATAGAAAAACCTTGCAAGC+AGG | - | chr1_2:75705464-75705483 | None:intergenic | 35.0% | |
| TTCGTTGAAAAGGGAAAAGA+GGG | - | chr1_2:75705488-75705507 | None:intergenic | 35.0% | |
| TCTTGTGTGTGCTAAACAAA+AGG | - | chr1_2:75705511-75705530 | None:intergenic | 35.0% | |
| !!! | ATAAGCTTCCTTTTGGTTCA+TGG | + | chr1_2:75705556-75705575 | Msa0092940:intron | 35.0% |
| GAAGAAAACCTTACTTCTGT+AGG | + | chr1_2:75705766-75705785 | Msa0092940:intron | 35.0% | |
| TACAGATTCCTACAGAAGTA+AGG | - | chr1_2:75705777-75705796 | None:intergenic | 35.0% | |
| ! | ACAATATCCAAAGTGGGTTT+CGG | - | chr1_2:75706039-75706058 | None:intergenic | 35.0% |
| AAAACTGTGAAGACGAAGTT+TGG | + | chr1_2:75706102-75706121 | Msa0092940:CDS | 35.0% | |
| GAATCTGTCGCATAAGAAAA+TGG | + | chr1_2:75704176-75704195 | Msa0092940:exon | 35.0% | |
| ! | AGCATTGAGAACGATGAAAT+TGG | - | chr1_2:75704334-75704353 | None:intergenic | 35.0% |
| CACTAATCATGATTCCTCTA+AGG | + | chr1_2:75704389-75704408 | Msa0092940:CDS | 35.0% | |
| !! | AGATGATGAGATTTTGGTGT+TGG | + | chr1_2:75704531-75704550 | Msa0092940:CDS | 35.0% |
| !! | GTATTGGCTATTCAGTTTGA+AGG | + | chr1_2:75704586-75704605 | Msa0092940:CDS | 35.0% |
| AGAGTTTGATGAGACTCTTT+GGG | - | chr1_2:75704987-75705006 | None:intergenic | 35.0% | |
| ! | TTCTTTTTACAAACGTCCCT+CGG | - | chr1_2:75705056-75705075 | None:intergenic | 35.0% |
| !!! | AGGACCGGAATTTATTTTAC+AGG | + | chr1_2:75705256-75705275 | Msa0092940:intron | 35.0% |
| TGTTTGTTTGAGAGTCCTAT+TGG | + | chr1_2:75705315-75705334 | Msa0092940:intron | 35.0% | |
| TGCAGCAAATATGAGCATAA+TGG | + | chr1_2:75705365-75705384 | Msa0092940:intron | 35.0% | |
| AATAGAAAAACCTTGCAAGC+AGG | - | chr1_2:75705464-75705483 | None:intergenic | 35.0% | |
| TTCGTTGAAAAGGGAAAAGA+GGG | - | chr1_2:75705488-75705507 | None:intergenic | 35.0% | |
| TCTTGTGTGTGCTAAACAAA+AGG | - | chr1_2:75705511-75705530 | None:intergenic | 35.0% | |
| !!! | ATAAGCTTCCTTTTGGTTCA+TGG | + | chr1_2:75705556-75705575 | Msa0092940:intron | 35.0% |
| GAAGAAAACCTTACTTCTGT+AGG | + | chr1_2:75705766-75705785 | Msa0092940:intron | 35.0% | |
| TACAGATTCCTACAGAAGTA+AGG | - | chr1_2:75705777-75705796 | None:intergenic | 35.0% | |
| ! | ACAATATCCAAAGTGGGTTT+CGG | - | chr1_2:75706039-75706058 | None:intergenic | 35.0% |
| AAAACTGTGAAGACGAAGTT+TGG | + | chr1_2:75706102-75706121 | Msa0092940:CDS | 35.0% | |
| ! | CAGCTTCGGTTTTCTTTGTT+TGG | + | chr1_2:75704125-75704144 | Msa0092940:five_prime_UTR | 40.0% |
| GTTTGAGTCGAATGTCGTAA+CGG | - | chr1_2:75704248-75704267 | None:intergenic | 40.0% | |
| GGTGACGATGTTAAGGTTAA+CGG | - | chr1_2:75704307-75704326 | None:intergenic | 40.0% | |
| GAGAACGATGAAATTGGTAG+TGG | - | chr1_2:75704328-75704347 | None:intergenic | 40.0% | |
| TGAGAAAATACCTACCGGAT+TGG | + | chr1_2:75704561-75704580 | Msa0092940:CDS | 40.0% | |
| GAGAAAATACCTACCGGATT+GGG | + | chr1_2:75704562-75704581 | Msa0092940:CDS | 40.0% | |
| AATAGCCAATACACCCAATC+CGG | - | chr1_2:75704578-75704597 | None:intergenic | 40.0% | |
| CAGAGTTTGATGAGACTCTT+TGG | - | chr1_2:75704988-75705007 | None:intergenic | 40.0% | |
| AAGAGTCTCATCAAACTCTG+TGG | + | chr1_2:75704988-75705007 | Msa0092940:intron | 40.0% | |
| AGACGAAGTTCAAATACCGA+GGG | + | chr1_2:75705037-75705056 | Msa0092940:intron | 40.0% | |
| TCGTTGAAAAGGGAAAAGAG+GGG | - | chr1_2:75705487-75705506 | None:intergenic | 40.0% | |
| GTTCGTTGAAAAGGGAAAAG+AGG | - | chr1_2:75705489-75705508 | None:intergenic | 40.0% | |
| !!! | TTCCTTTTGGTTCATGGCTT+TGG | + | chr1_2:75705562-75705581 | Msa0092940:intron | 40.0% |
| AACTAATGATGAATGCCTCG+AGG | + | chr1_2:75705605-75705624 | Msa0092940:intron | 40.0% | |
| AGTAGAGTCGAAGTGTGAAT+TGG | + | chr1_2:75705968-75705987 | Msa0092940:intron | 40.0% | |
| GAAACCCACTTTGGATATTG+TGG | + | chr1_2:75706038-75706057 | Msa0092940:CDS | 40.0% | |
| ! | CAGCTTCGGTTTTCTTTGTT+TGG | + | chr1_2:75704125-75704144 | Msa0092940:five_prime_UTR | 40.0% |
| GTTTGAGTCGAATGTCGTAA+CGG | - | chr1_2:75704248-75704267 | None:intergenic | 40.0% | |
| GGTGACGATGTTAAGGTTAA+CGG | - | chr1_2:75704307-75704326 | None:intergenic | 40.0% | |
| GAGAACGATGAAATTGGTAG+TGG | - | chr1_2:75704328-75704347 | None:intergenic | 40.0% | |
| TGAGAAAATACCTACCGGAT+TGG | + | chr1_2:75704561-75704580 | Msa0092940:CDS | 40.0% | |
| GAGAAAATACCTACCGGATT+GGG | + | chr1_2:75704562-75704581 | Msa0092940:CDS | 40.0% | |
| AATAGCCAATACACCCAATC+CGG | - | chr1_2:75704578-75704597 | None:intergenic | 40.0% | |
| CAGAGTTTGATGAGACTCTT+TGG | - | chr1_2:75704988-75705007 | None:intergenic | 40.0% | |
| AAGAGTCTCATCAAACTCTG+TGG | + | chr1_2:75704988-75705007 | Msa0092940:intron | 40.0% | |
| AGACGAAGTTCAAATACCGA+GGG | + | chr1_2:75705037-75705056 | Msa0092940:intron | 40.0% | |
| TCGTTGAAAAGGGAAAAGAG+GGG | - | chr1_2:75705487-75705506 | None:intergenic | 40.0% | |
| GTTCGTTGAAAAGGGAAAAG+AGG | - | chr1_2:75705489-75705508 | None:intergenic | 40.0% | |
| !!! | TTCCTTTTGGTTCATGGCTT+TGG | + | chr1_2:75705562-75705581 | Msa0092940:intron | 40.0% |
| AACTAATGATGAATGCCTCG+AGG | + | chr1_2:75705605-75705624 | Msa0092940:intron | 40.0% | |
| AGTAGAGTCGAAGTGTGAAT+TGG | + | chr1_2:75705968-75705987 | Msa0092940:intron | 40.0% | |
| GAAACCCACTTTGGATATTG+TGG | + | chr1_2:75706038-75706057 | Msa0092940:CDS | 40.0% | |
| ! | CGGTTTGGAACAGCGAATTT+GGG | - | chr1_2:75704228-75704247 | None:intergenic | 45.0% |
| ! | ACGGTTTGGAACAGCGAATT+TGG | - | chr1_2:75704229-75704248 | None:intergenic | 45.0% |
| AGTCGAATGTCGTAACGGTT+TGG | - | chr1_2:75704243-75704262 | None:intergenic | 45.0% | |
| !! | TGGTAGTGGTGACGATGTTA+AGG | - | chr1_2:75704314-75704333 | None:intergenic | 45.0% |
| TATTTGAACTTCGTCTCCGG+AGG | - | chr1_2:75705033-75705052 | None:intergenic | 45.0% | |
| CGGTATTTGAACTTCGTCTC+CGG | - | chr1_2:75705036-75705055 | None:intergenic | 45.0% | |
| GAGACGAAGTTCAAATACCG+AGG | + | chr1_2:75705036-75705055 | Msa0092940:intron | 45.0% | |
| CACCAAAGCCATGAACCAAA+AGG | - | chr1_2:75705567-75705586 | None:intergenic | 45.0% | |
| !!! | CTTTTGGTTCATGGCTTTGG+TGG | + | chr1_2:75705565-75705584 | Msa0092940:intron | 45.0% |
| AATGATGAATGCCTCGAGGT+TGG | + | chr1_2:75705609-75705628 | Msa0092940:intron | 45.0% | |
| ATGATGAATGCCTCGAGGTT+GGG | + | chr1_2:75705610-75705629 | Msa0092940:intron | 45.0% | |
| AGAGTCGAAGTGTGAATTGG+TGG | + | chr1_2:75705971-75705990 | Msa0092940:intron | 45.0% | |
| AAGAGCAGAGCCAACAACAA+AGG | + | chr1_2:75706013-75706032 | Msa0092940:CDS | 45.0% | |
| ACCCACTTTGGATATTGTGG+TGG | + | chr1_2:75706041-75706060 | Msa0092940:CDS | 45.0% | |
| GCCACCACAATATCCAAAGT+GGG | - | chr1_2:75706045-75706064 | None:intergenic | 45.0% | |
| ! | CGGTTTGGAACAGCGAATTT+GGG | - | chr1_2:75704228-75704247 | None:intergenic | 45.0% |
| ! | ACGGTTTGGAACAGCGAATT+TGG | - | chr1_2:75704229-75704248 | None:intergenic | 45.0% |
| AGTCGAATGTCGTAACGGTT+TGG | - | chr1_2:75704243-75704262 | None:intergenic | 45.0% | |
| !! | TGGTAGTGGTGACGATGTTA+AGG | - | chr1_2:75704314-75704333 | None:intergenic | 45.0% |
| TATTTGAACTTCGTCTCCGG+AGG | - | chr1_2:75705033-75705052 | None:intergenic | 45.0% | |
| CGGTATTTGAACTTCGTCTC+CGG | - | chr1_2:75705036-75705055 | None:intergenic | 45.0% | |
| GAGACGAAGTTCAAATACCG+AGG | + | chr1_2:75705036-75705055 | Msa0092940:intron | 45.0% | |
| CACCAAAGCCATGAACCAAA+AGG | - | chr1_2:75705567-75705586 | None:intergenic | 45.0% | |
| !!! | CTTTTGGTTCATGGCTTTGG+TGG | + | chr1_2:75705565-75705584 | Msa0092940:intron | 45.0% |
| AATGATGAATGCCTCGAGGT+TGG | + | chr1_2:75705609-75705628 | Msa0092940:intron | 45.0% | |
| ATGATGAATGCCTCGAGGTT+GGG | + | chr1_2:75705610-75705629 | Msa0092940:intron | 45.0% | |
| AGAGTCGAAGTGTGAATTGG+TGG | + | chr1_2:75705971-75705990 | Msa0092940:intron | 45.0% | |
| AAGAGCAGAGCCAACAACAA+AGG | + | chr1_2:75706013-75706032 | Msa0092940:CDS | 45.0% | |
| ACCCACTTTGGATATTGTGG+TGG | + | chr1_2:75706041-75706060 | Msa0092940:CDS | 45.0% | |
| GCCACCACAATATCCAAAGT+GGG | - | chr1_2:75706045-75706064 | None:intergenic | 45.0% | |
| ACAGCGAATTTGGGAAGACG+AGG | - | chr1_2:75704219-75704238 | None:intergenic | 50.0% | |
| AAACGACATTCGACGAGGTC+TGG | - | chr1_2:75704270-75704289 | None:intergenic | 50.0% | |
| CAGAGAAACGACATTCGACG+AGG | - | chr1_2:75704275-75704294 | None:intergenic | 50.0% | |
| ! | CTCGTCGAATGTCGTTTCTC+TGG | + | chr1_2:75704273-75704292 | Msa0092940:CDS | 50.0% |
| ! | ACCTACCGGATTGGGTGTAT+TGG | + | chr1_2:75704570-75704589 | Msa0092940:CDS | 50.0% |
| GAGCTTAGCATTGTCTCCTC+CGG | + | chr1_2:75705014-75705033 | Msa0092940:intron | 50.0% | |
| AGTTTGAACCAGCTGATGCC+AGG | + | chr1_2:75705414-75705433 | Msa0092940:CDS | 50.0% | |
| CAGGCGATGCTTTCCTTGTT+GGG | + | chr1_2:75705433-75705452 | Msa0092940:CDS | 50.0% | |
| !! | GGTTCATGGCTTTGGTGGTA+AGG | + | chr1_2:75705570-75705589 | Msa0092940:intron | 50.0% |
| GTCGAAGTGTGAATTGGTGG+AGG | + | chr1_2:75705974-75705993 | Msa0092940:CDS | 50.0% | |
| ! | TGGGTTTCGGCCTTTGTTGT+TGG | - | chr1_2:75706026-75706045 | None:intergenic | 50.0% |
| ACAAAGGCCGAAACCCACTT+TGG | + | chr1_2:75706029-75706048 | Msa0092940:CDS | 50.0% | |
| GGCCACCACAATATCCAAAG+TGG | - | chr1_2:75706046-75706065 | None:intergenic | 50.0% | |
| TTTGGATATTGTGGTGGCCG+TGG | + | chr1_2:75706047-75706066 | Msa0092940:CDS | 50.0% | |
| TTGGATATTGTGGTGGCCGT+GGG | + | chr1_2:75706048-75706067 | Msa0092940:CDS | 50.0% | |
| ! | TTGGTCTTCGGTAACGATGG+TGG | + | chr1_2:75706071-75706090 | Msa0092940:CDS | 50.0% |
| ACAGCGAATTTGGGAAGACG+AGG | - | chr1_2:75704219-75704238 | None:intergenic | 50.0% | |
| AAACGACATTCGACGAGGTC+TGG | - | chr1_2:75704270-75704289 | None:intergenic | 50.0% | |
| CAGAGAAACGACATTCGACG+AGG | - | chr1_2:75704275-75704294 | None:intergenic | 50.0% | |
| ! | CTCGTCGAATGTCGTTTCTC+TGG | + | chr1_2:75704273-75704292 | Msa0092940:CDS | 50.0% |
| ! | ACCTACCGGATTGGGTGTAT+TGG | + | chr1_2:75704570-75704589 | Msa0092940:CDS | 50.0% |
| GAGCTTAGCATTGTCTCCTC+CGG | + | chr1_2:75705014-75705033 | Msa0092940:intron | 50.0% | |
| AGTTTGAACCAGCTGATGCC+AGG | + | chr1_2:75705414-75705433 | Msa0092940:CDS | 50.0% | |
| CAGGCGATGCTTTCCTTGTT+GGG | + | chr1_2:75705433-75705452 | Msa0092940:CDS | 50.0% | |
| !! | GGTTCATGGCTTTGGTGGTA+AGG | + | chr1_2:75705570-75705589 | Msa0092940:intron | 50.0% |
| GTCGAAGTGTGAATTGGTGG+AGG | + | chr1_2:75705974-75705993 | Msa0092940:CDS | 50.0% | |
| ! | TGGGTTTCGGCCTTTGTTGT+TGG | - | chr1_2:75706026-75706045 | None:intergenic | 50.0% |
| ACAAAGGCCGAAACCCACTT+TGG | + | chr1_2:75706029-75706048 | Msa0092940:CDS | 50.0% | |
| GGCCACCACAATATCCAAAG+TGG | - | chr1_2:75706046-75706065 | None:intergenic | 50.0% | |
| TTTGGATATTGTGGTGGCCG+TGG | + | chr1_2:75706047-75706066 | Msa0092940:CDS | 50.0% | |
| TTGGATATTGTGGTGGCCGT+GGG | + | chr1_2:75706048-75706067 | Msa0092940:CDS | 50.0% | |
| ! | TTGGTCTTCGGTAACGATGG+TGG | + | chr1_2:75706071-75706090 | Msa0092940:CDS | 50.0% |
| AGAAACGGCGTCGTTAGCGA+CGG | - | chr1_2:75704367-75704386 | None:intergenic | 55.0% | |
| GCCAATACACCCAATCCGGT+AGG | - | chr1_2:75704574-75704593 | None:intergenic | 55.0% | |
| !! | CCAACAAGGAAAGCATCGCC+TGG | - | chr1_2:75705435-75705454 | None:intergenic | 55.0% |
| CCAGGCGATGCTTTCCTTGT+TGG | + | chr1_2:75705432-75705451 | Msa0092940:CDS | 55.0% | |
| CAAGCAGGCTCATCCCAACA+AGG | - | chr1_2:75705449-75705468 | None:intergenic | 55.0% | |
| TTGGGATGAGCCTGCTTGCA+AGG | + | chr1_2:75705451-75705470 | Msa0092940:CDS | 55.0% | |
| !! | GAATAATGGGCCCAACCTCG+AGG | - | chr1_2:75705623-75705642 | None:intergenic | 55.0% |
| ATATTGTGGTGGCCGTGGGT+TGG | + | chr1_2:75706052-75706071 | Msa0092940:CDS | 55.0% | |
| CGTTACCGAAGACCAACCCA+CGG | - | chr1_2:75706067-75706086 | None:intergenic | 55.0% | |
| !! | GGGTTGGTCTTCGGTAACGA+TGG | + | chr1_2:75706068-75706087 | Msa0092940:CDS | 55.0% |
| !! | CTTCGGTAACGATGGTGGAG+AGG | + | chr1_2:75706076-75706095 | Msa0092940:CDS | 55.0% |
| AGAAACGGCGTCGTTAGCGA+CGG | - | chr1_2:75704367-75704386 | None:intergenic | 55.0% | |
| GCCAATACACCCAATCCGGT+AGG | - | chr1_2:75704574-75704593 | None:intergenic | 55.0% | |
| !! | CCAACAAGGAAAGCATCGCC+TGG | - | chr1_2:75705435-75705454 | None:intergenic | 55.0% |
| CCAGGCGATGCTTTCCTTGT+TGG | + | chr1_2:75705432-75705451 | Msa0092940:CDS | 55.0% | |
| CAAGCAGGCTCATCCCAACA+AGG | - | chr1_2:75705449-75705468 | None:intergenic | 55.0% | |
| TTGGGATGAGCCTGCTTGCA+AGG | + | chr1_2:75705451-75705470 | Msa0092940:CDS | 55.0% | |
| !! | GAATAATGGGCCCAACCTCG+AGG | - | chr1_2:75705623-75705642 | None:intergenic | 55.0% |
| ATATTGTGGTGGCCGTGGGT+TGG | + | chr1_2:75706052-75706071 | Msa0092940:CDS | 55.0% | |
| CGTTACCGAAGACCAACCCA+CGG | - | chr1_2:75706067-75706086 | None:intergenic | 55.0% | |
| !! | GGGTTGGTCTTCGGTAACGA+TGG | + | chr1_2:75706068-75706087 | Msa0092940:CDS | 55.0% |
| !! | CTTCGGTAACGATGGTGGAG+AGG | + | chr1_2:75706076-75706095 | Msa0092940:CDS | 55.0% |
| ! | AAGCATCGCCTGGCATCAGC+TGG | - | chr1_2:75705425-75705444 | None:intergenic | 60.0% |
| ! | AAGCATCGCCTGGCATCAGC+TGG | - | chr1_2:75705425-75705444 | None:intergenic | 60.0% |
| !! | GGTGGCCGTGGGTTGGTCTT+CGG | + | chr1_2:75706059-75706078 | Msa0092940:CDS | 65.0% |
| !! | GGTGGCCGTGGGTTGGTCTT+CGG | + | chr1_2:75706059-75706078 | Msa0092940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75704098 | 75706137 | 75704098 | ID=Msa0092940;Name=Msa0092940 |
| chr1_2 | mRNA | 75704098 | 75706137 | 75704098 | ID=Msa0092940-mRNA-1;Parent=Msa0092940;Name=Msa0092940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=97|0.66|0.75|0.75|1|1|4|0|209 |
| chr1_2 | exon | 75704098 | 75704410 | 75704098 | ID=Msa0092940-mRNA-1:exon:26642;Parent=Msa0092940-mRNA-1 |
| chr1_2 | exon | 75704499 | 75704644 | 75704499 | ID=Msa0092940-mRNA-1:exon:26643;Parent=Msa0092940-mRNA-1 |
| chr1_2 | exon | 75705370 | 75705472 | 75705370 | ID=Msa0092940-mRNA-1:exon:26644;Parent=Msa0092940-mRNA-1 |
| chr1_2 | exon | 75705973 | 75706137 | 75705973 | ID=Msa0092940-mRNA-1:exon:26645;Parent=Msa0092940-mRNA-1 |
| chr1_2 | five_prime_UTR | 75704098 | 75704194 | 75704098 | ID=Msa0092940-mRNA-1:five_prime_utr;Parent=Msa0092940-mRNA-1 |
| chr1_2 | CDS | 75704195 | 75704410 | 75704195 | ID=Msa0092940-mRNA-1:cds;Parent=Msa0092940-mRNA-1 |
| chr1_2 | CDS | 75704499 | 75704644 | 75704499 | ID=Msa0092940-mRNA-1:cds;Parent=Msa0092940-mRNA-1 |
| chr1_2 | CDS | 75705370 | 75705472 | 75705370 | ID=Msa0092940-mRNA-1:cds;Parent=Msa0092940-mRNA-1 |
| chr1_2 | CDS | 75705973 | 75706137 | 75705973 | ID=Msa0092940-mRNA-1:cds;Parent=Msa0092940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
