AlfalfaGEDB | Msa1344310

M. sativa cultivar zhongmu-4 / Msa1344310

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098791
PFAM: PF02225.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344310	XP_003592523.2	97.816	641	5	1	1	641	1	632	0.0	1293

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344310	sp\|P93484\|VSR1_PEA	83.994	631	84	4	11	641	10	623	0.0	1113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344310	G7IEX3	97.816	641	5	1	1	641	1	632	0.0	1293

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa1344310	0.818022	2.434222e-52	-8.615850e-47
Msa0000910	Msa1344310	0.846866	1.658896e-59	-8.615850e-47
Msa0002560	Msa1344310	0.857858	1.225820e-62	-8.615850e-47
Msa0002680	Msa1344310	0.852266	5.168392e-61	-8.615850e-47
Msa0002710	Msa1344310	0.812024	5.221092e-51	-8.615850e-47
Msa0003220	Msa1344310	0.875421	3.123321e-68	-8.615850e-47
Msa0003270	Msa1344310	0.843923	1.039319e-58	-8.615850e-47
Msa0003630	Msa1344310	0.825227	5.258919e-54	-8.615850e-47
Msa0004540	Msa1344310	0.826973	2.022100e-54	-8.615850e-47
Msa0005270	Msa1344310	0.800710	1.268673e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344310	MtrunA17_Chr1g0207291	97.816	641	5	1	1	641	1	632	0.0	1293
Msa1344310	MtrunA17_Chr5g0393731	84.399	641	85	4	1	641	1	626	0.0	1131
Msa1344310	MtrunA17_Chr8g0334591	64.274	627	210	3	12	636	7	621	0.0	871
Msa1344310	MtrunA17_Chr7g0244951	64.984	614	199	3	25	637	21	619	0.0	869
Msa1344310	MtrunA17_Chr2g0296671	61.600	625	222	5	11	634	6	613	0.0	796
Msa1344310	MtrunA17_Chr3g0133721	88.060	67	8	0	1	67	1	67	1.03e-25	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1344310	AT2G14740.2	82.792	616	95	2	26	641	24	628	1083
Msa1344310	AT2G14740.1	82.792	616	95	2	26	641	24	628	1083
Msa1344310	AT2G14720.1	82.143	616	99	2	26	641	24	628	1075
Msa1344310	AT2G14720.2	82.143	616	99	2	26	641	24	628	1075
Msa1344310	AT3G52850.1	69.614	622	176	4	9	629	3	612	920
Msa1344310	AT2G30290.2	67.492	606	185	2	23	628	20	613	902
Msa1344310	AT2G30290.1	67.492	606	185	2	23	628	20	613	900
Msa1344310	AT4G20110.1	60.806	620	222	6	13	629	10	611	810
Msa1344310	AT4G20110.2	60.645	620	226	7	13	629	10	614	805
Msa1344310	AT1G30900.1	59.236	628	236	6	3	630	4	611	800

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Find 196 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCCAGTCGGGAAGG+AGG	0.630243	tig0006806:-34957	Msa1344310:CDS
AAATTAAAGAAAGCCATAAG+TGG	0.610630	tig0006806:-39092	Msa1344310:CDS
AACAAAACAAAAGGAAATTA+TGG	0.310587	tig0006806:+40532	None:intergenic
AACATAGTCCCACCACACCC+AGG	0.607740	tig0006806:+38683	None:intergenic
AACCATATCTCCACCACTTA+TGG	0.277116	tig0006806:+39079	None:intergenic
AACCATGGACACACCTGAGG+AGG	0.596696	tig0006806:-39186	Msa1344310:CDS
AACTGCACACCATCTACCAA+GGG	0.610753	tig0006806:+37773	None:intergenic
AACTTCTGATTGGCTGTCCA+AGG	0.478629	tig0006806:+34511	None:intergenic
AACTTTGGGATACCTCAATA+CGG	0.590006	tig0006806:-40193	Msa1344310:CDS
AAGTCTCAGTGCATTAACCA+TGG	0.700775	tig0006806:-38825	Msa1344310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCTTTACCAACAAACAA+AGG	-	tig0006806:34252-34271	Msa1344310:three_prime_UTR	30.0%
TGAGAAAGGAACAAAACAAA+AGG	+	tig0006806:34307-34326	None:intergenic	30.0%
AATTCGAAGTTCTTCTTCTA+TGG	-	tig0006806:34483-34502	Msa1344310:CDS	30.0%
ATTCGAAGTTCTTCTTCTAT+GGG	-	tig0006806:34484-34503	Msa1344310:CDS	30.0%
TATGTTCCTTTGATACTATC+CGG	+	tig0006806:34598-34617	None:intergenic	30.0%
GTATCCAAAGGATAATCAAA+AGG	-	tig0006806:34681-34700	Msa1344310:intron	30.0%
ATTTCCTTTAAATCTAAGCC+TGG	-	tig0006806:34730-34749	Msa1344310:intron	30.0%
AGAGAACATAACAATACCAT+CGG	-	tig0006806:35686-35705	Msa1344310:intron	30.0%
TGGTTAACGTAAATCTTGAT+TGG	-	tig0006806:35766-35785	Msa1344310:intron	30.0%
AGTTAAATGCGATATGTTGA+TGG	-	tig0006806:35860-35879	Msa1344310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006806	gene	34143	40706	34143	ID=Msa1344310;Name=Msa1344310
tig0006806	mRNA	34143	40706	34143	ID=Msa1344310-mRNA-1;Parent=Msa1344310;Name=Msa1344310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=335\|0.90\|0.83\|1\|0.90\|0.83\|12\|338\|641
tig0006806	exon	34143	34579	34143	ID=Msa1344310-mRNA-1:exon:4496;Parent=Msa1344310-mRNA-1
tig0006806	exon	34866	34981	34866	ID=Msa1344310-mRNA-1:exon:4495;Parent=Msa1344310-mRNA-1
tig0006806	exon	35067	35195	35067	ID=Msa1344310-mRNA-1:exon:4494;Parent=Msa1344310-mRNA-1
tig0006806	exon	36553	36619	36553	ID=Msa1344310-mRNA-1:exon:4493;Parent=Msa1344310-mRNA-1
tig0006806	exon	36740	36822	36740	ID=Msa1344310-mRNA-1:exon:4492;Parent=Msa1344310-mRNA-1
tig0006806	exon	37744	37825	37744	ID=Msa1344310-mRNA-1:exon:4491;Parent=Msa1344310-mRNA-1
tig0006806	exon	37920	37996	37920	ID=Msa1344310-mRNA-1:exon:4490;Parent=Msa1344310-mRNA-1
tig0006806	exon	38097	38180	38097	ID=Msa1344310-mRNA-1:exon:4489;Parent=Msa1344310-mRNA-1
tig0006806	exon	38263	38332	38263	ID=Msa1344310-mRNA-1:exon:4488;Parent=Msa1344310-mRNA-1
tig0006806	exon	38433	38544	38433	ID=Msa1344310-mRNA-1:exon:4487;Parent=Msa1344310-mRNA-1
tig0006806	exon	38600	39296	38600	ID=Msa1344310-mRNA-1:exon:4486;Parent=Msa1344310-mRNA-1
tig0006806	exon	40062	40706	40062	ID=Msa1344310-mRNA-1:exon:4485;Parent=Msa1344310-mRNA-1
tig0006806	five_prime_UTR	40372	40706	40372	ID=Msa1344310-mRNA-1:five_prime_utr;Parent=Msa1344310-mRNA-1
tig0006806	CDS	40062	40371	40062	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	38600	39296	38600	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	38433	38544	38433	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	38263	38332	38263	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	38097	38180	38097	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	37920	37996	37920	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	37744	37825	37744	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	36740	36822	36740	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	36553	36619	36553	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	35067	35195	35067	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	34866	34981	34866	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	CDS	34481	34579	34481	ID=Msa1344310-mRNA-1:cds;Parent=Msa1344310-mRNA-1
tig0006806	three_prime_UTR	34143	34480	34143	ID=Msa1344310-mRNA-1:three_prime_utr;Parent=Msa1344310-mRNA-1

Gene Sequence

>Msa1344310

ATGAAAATTCGAAGTTCTTCTTCTATGGGTTTATTTTTAGGGTTTCTGTTACTATCGTTGACGCCTTCATCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGAGGGTCACTTCACCGGATAGTATCAAAGGAACATACGATAGTGCGATTGGTAACTTTGGGATACCTCAATACGGTGGTAGCATGGCTGGGAACGTTGTGTATCCAAAGGATAATCAAAAGGGTTGTAAAGAGTTTGATGAGTCTGGGATTTCCTTTAAATCTAAGCCTGGTGCTCTTCCCACTATTGTTTTGCTCGATCGTGGAAGTTGCTTTTTTGCTTTGAAGGTGTGGAATGCCCAGAAGGCTGGAGCTTCTTCTGTTCTTGTTGCGGATGATATTGAAGAAAAATTAATAACCATGGACACACCTGAGGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCATCGGCTCTCATCGAAAAGAATTTTGGTGAAAAATTAAAGAAAGCCATAAGTGGTGGAGATATGGTTAACGTAAATCTTGATTGGAGAGAGGCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGCGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTAGAGAAAGGTGGTTATGCCCAGTTTACACCCCACTATATTACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATACTGTGCCCCAGATCCCGAGCAAGATTTCAGCACCGGTTATGACGGGAAAGATGTGGTTATTGAAAATTTGAGGCAGTTATGTGTTTTCAAGGTTGCAAATGAAACCAAAAAGCCCTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAATAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGCAATTATGATTATTCAATATCTGCAGGTCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAGATGCCGATTCTGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGGAAGGGATCACGAGGTGACGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAATGAATGCTTGGAGAACAACGGTGGTTGTTGGAAGGATAAAGCAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGGCGAGTATGTGAATGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGTGAAGCTAGTGGACCTGGAAGGTGTAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGGAATGGACATGCATTTTCTGCTTGTTCGGATAATGGAGGGGTTAGATGCGAGTGTCCTGCAGGGTTTAAAGGTGACGGTGTTAAAAATTGTGCAGACATTGATGAATGCAAGGAGAAGAAAGCTTGTCACTGCCCTGAATGTAGCTGCAAGAATACCTGGGGAAGCTATAACTGCAGTTGCAGTGGGGATCTTCTGTATATCAGGGACCATGATGCATGCATAAGTAAAACTGCCAGTCGGGAAGGAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAGTCGGCTTAGTTCTGGCCGCTTCAGGGGCATACCTTGTCTACAAATACAGAATTAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCCTTGGACAGCCAATCAGAAGTTGTAAATCATGTCAACGATGAAAGAGCATGA

Protein sequence

>Msa1344310

MKIRSSSSMGLFLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVYPKDNQKGCKEFDESGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASSVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKNFGEKLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYAQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGNYDYSISAGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSEVETNECLENNGGCWKDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGGVRCECPAGFKGDGVKNCADIDECKEKKACHCPECSCKNTWGSYNCSCSGDLLYIRDHDACISKTASREGGKSAWAAFWVIVVGLVLAASGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHVNDERA*