Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113560 | G7I517 | 90.244 | 41 | 4 | 0 | 42 | 82 | 129 | 169 | 1.77e-15 | 80.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0113560 | 0.809048 | 2.294031e-50 | -8.615850e-47 |
| Msa0075880 | Msa0113560 | 0.805786 | 1.128195e-49 | -8.615850e-47 |
| Msa0084380 | Msa0113560 | 0.814904 | 1.214837e-51 | -8.615850e-47 |
| Msa0113560 | Msa0114060 | 0.803123 | 4.050434e-49 | -8.615850e-47 |
| Msa0113560 | Msa0131770 | 0.800712 | 1.267176e-48 | -8.615850e-47 |
| Msa0113560 | Msa0213520 | 0.800621 | 1.322774e-48 | -8.615850e-47 |
| Msa0113560 | Msa0222890 | 0.811467 | 6.901034e-51 | -8.615850e-47 |
| Msa0113560 | Msa0288100 | 0.803339 | 3.655046e-49 | -8.615850e-47 |
| Msa0113560 | Msa0292930 | 0.811439 | 6.997966e-51 | -8.615850e-47 |
| Msa0113560 | Msa0319170 | 0.802343 | 5.869739e-49 | -8.615850e-47 |
| Msa0113560 | Msa0331000 | 0.817342 | 3.465805e-52 | -8.615850e-47 |
| Msa0113560 | Msa0355220 | 0.819782 | 9.692815e-53 | -8.615850e-47 |
| Msa0113560 | Msa0371730 | 0.814320 | 1.636030e-51 | -8.615850e-47 |
| Msa0113560 | Msa0402290 | 0.819627 | 1.051763e-52 | -8.615850e-47 |
| Msa0113560 | Msa0426900 | 0.802456 | 5.561091e-49 | -8.615850e-47 |
| Msa0113560 | Msa0443260 | 0.804318 | 2.288720e-49 | -8.615850e-47 |
| Msa0113560 | Msa0466120 | 0.809652 | 1.702212e-50 | -8.615850e-47 |
| Msa0113560 | Msa0512900 | 0.808694 | 2.731036e-50 | -8.615850e-47 |
| Msa0113560 | Msa0529890 | 0.802702 | 4.949780e-49 | -8.615850e-47 |
| Msa0113560 | Msa0585230 | 0.810175 | 1.313824e-50 | -8.615850e-47 |
| Msa0113560 | Msa0598780 | 0.815812 | 7.632704e-52 | -8.615850e-47 |
| Msa0113560 | Msa0613440 | 0.813600 | 2.357838e-51 | -8.615850e-47 |
| Msa0113560 | Msa0617640 | 0.801616 | 8.278708e-49 | -8.615850e-47 |
| Msa0113560 | Msa0625720 | 0.801314 | 9.546875e-49 | -8.615850e-47 |
| Msa0113560 | Msa0632740 | 0.803991 | 2.676758e-49 | -8.615850e-47 |
| Msa0113560 | Msa0672690 | 0.800819 | 1.205282e-48 | -8.615850e-47 |
| Msa0113560 | Msa0694370 | 0.802832 | 4.653527e-49 | -8.615850e-47 |
| Msa0113560 | Msa0731940 | 0.809390 | 1.937878e-50 | -8.615850e-47 |
| Msa0113560 | Msa0766630 | 0.807660 | 4.534609e-50 | -8.615850e-47 |
| Msa0113560 | Msa0768310 | 0.800895 | 1.162911e-48 | -8.615850e-47 |
| Msa0113560 | Msa0810220 | 0.817342 | 3.466037e-52 | -8.615850e-47 |
| Msa0113560 | Msa0820850 | 0.807648 | 4.560804e-50 | -8.615850e-47 |
| Msa0113560 | Msa0832340 | 0.810351 | 1.203718e-50 | -8.615850e-47 |
| Msa0113560 | Msa0844490 | 0.830247 | 3.270342e-55 | -8.615850e-47 |
| Msa0113560 | Msa0861130 | 0.808573 | 2.898679e-50 | -8.615850e-47 |
| Msa0113560 | Msa0933100 | 0.806708 | 7.214765e-50 | -8.615850e-47 |
| Msa0113560 | Msa0936300 | 0.800837 | 1.195031e-48 | -8.615850e-47 |
| Msa0113560 | Msa0969520 | 0.830584 | 2.704161e-55 | -8.615850e-47 |
| Msa0113560 | Msa0973100 | 0.802142 | 6.454514e-49 | -8.615850e-47 |
| Msa0113560 | Msa0974070 | 0.806915 | 6.524189e-50 | -8.615850e-47 |
| Msa0113560 | Msa0997370 | 0.804438 | 2.159878e-49 | -8.615850e-47 |
| Msa0113560 | Msa1000900 | 0.803108 | 4.079275e-49 | -8.615850e-47 |
| Msa0113560 | Msa1014540 | 0.844308 | 8.192731e-59 | -8.615850e-47 |
| Msa0113560 | Msa1023950 | 0.805295 | 1.430250e-49 | -8.615850e-47 |
| Msa0113560 | Msa1075540 | 0.817399 | 3.365408e-52 | -8.615850e-47 |
| Msa0113560 | Msa1075650 | 0.808061 | 3.726528e-50 | -8.615850e-47 |
| Msa0113560 | Msa1121490 | 0.809073 | 2.266261e-50 | -8.615850e-47 |
| Msa0113560 | Msa1137570 | 0.804073 | 2.572743e-49 | -8.615850e-47 |
| Msa0113560 | Msa1167340 | 0.811416 | 7.076698e-51 | -8.615850e-47 |
| Msa0113560 | Msa1193290 | 0.800277 | 1.553881e-48 | -8.615850e-47 |
| Msa0113560 | Msa1277660 | 0.802218 | 6.227156e-49 | -8.615850e-47 |
| Msa0113560 | Msa1284680 | 0.818964 | 1.489052e-52 | -8.615850e-47 |
| Msa0113560 | Msa1353470 | 0.803748 | 3.005985e-49 | -8.615850e-47 |
| Msa0113560 | Msa1373030 | 0.800655 | 1.301615e-48 | -8.615850e-47 |
| Msa0113560 | Msa1397860 | 0.821582 | 3.739693e-53 | -8.615850e-47 |
| Msa0113560 | Msa1427230 | 0.803036 | 4.222425e-49 | -8.615850e-47 |
| Msa0113560 | Msa1451570 | 0.812019 | 5.231754e-51 | -8.615850e-47 |
| Msa0113560 | Msa1466540 | 0.845592 | 3.689865e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113560 | MtrunA17_Chr1g0199571 | 90.244 | 41 | 4 | 0 | 42 | 82 | 129 | 169 | 3.50e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113560 | AT5G04220.3 | 63.415 | 41 | 15 | 0 | 42 | 82 | 67 | 107 | 8.85e-12 | 59.3 |
| Msa0113560 | AT5G04220.2 | 63.415 | 41 | 15 | 0 | 42 | 82 | 129 | 169 | 1.04e-11 | 59.3 |
Find 24 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCAGGTATGAAAGTTT+TGG | 0.273201 | 1_3:-29495285 | Msa0113560:CDS |
| TGCAAGGTCAATACTATGTT+TGG | 0.291324 | 1_3:+29495209 | None:intergenic |
| GGAAACAAATGAAAAGGAAT+TGG | 0.343840 | 1_3:-29495264 | Msa0113560:CDS |
| TATTGCATTCCTTGCAATGA+TGG | 0.437005 | 1_3:+29496003 | None:intergenic |
| GCAATAAGACATTGGGATGA+TGG | 0.439230 | 1_3:-29495986 | Msa0113560:CDS |
| GCAAGGTCAATACTATGTTT+GGG | 0.443699 | 1_3:+29495210 | None:intergenic |
| TCATGAAACAAGTCATCAAA+TGG | 0.463122 | 1_3:-29495241 | Msa0113560:CDS |
| ATTGTTTGTAGCAATTCTGC+AGG | 0.482743 | 1_3:-29495299 | Msa0113560:intron |
| CAAGGAATGCAATAAGACAT+TGG | 0.491395 | 1_3:-29495994 | Msa0113560:CDS |
| AAGGAATGCAATAAGACATT+GGG | 0.493762 | 1_3:-29495993 | Msa0113560:CDS |
| TATGAGATTGAATTTATGTC+TGG | 0.494249 | 1_3:-29496091 | None:intergenic |
| CAATAAGACATTGGGATGAT+GGG | 0.504343 | 1_3:-29495985 | Msa0113560:intron |
| GTGTAGCGGAGGTAGGGAGG+TGG | 0.510408 | 1_3:-29496069 | Msa0113560:CDS |
| ATGTCTGGTGTAGCGGAGGT+AGG | 0.526263 | 1_3:-29496076 | Msa0113560:CDS |
| GTCTATGAAGATCAAAGTGC+AGG | 0.534460 | 1_3:-29495180 | Msa0113560:CDS |
| TGTAGCGGAGGTAGGGAGGT+GGG | 0.547681 | 1_3:-29496068 | Msa0113560:CDS |
| TGTCTGGTGTAGCGGAGGTA+GGG | 0.549091 | 1_3:-29496075 | Msa0113560:CDS |
| TGAATTTATGTCTGGTGTAG+CGG | 0.559041 | 1_3:-29496083 | None:intergenic |
| AAACAAGTCATCAAATGGAC+TGG | 0.565498 | 1_3:-29495236 | Msa0113560:CDS |
| CTGGTGTAGCGGAGGTAGGG+AGG | 0.573553 | 1_3:-29496072 | Msa0113560:CDS |
| ATTTATGTCTGGTGTAGCGG+AGG | 0.638357 | 1_3:-29496080 | None:intergenic |
| CTTCATAGACAACACATGCA+AGG | 0.656238 | 1_3:+29495193 | None:intergenic |
| TCTACTGCACCATCATTGCA+AGG | 0.665556 | 1_3:-29496012 | Msa0113560:CDS |
| ACACGCCGAAGAAAACTGTG+AGG | 0.784742 | 1_3:+29496035 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTATGTTTTGTTTTT+AGG | - | chr1_3:29495537-29495556 | Msa0113560:intron | 10.0% |
| !!! | ATTATTATGTTTTGTTTTTA+GGG | - | chr1_3:29495538-29495557 | Msa0113560:intron | 10.0% |
| !!! | TATTATTATGTTTTGTTTTT+AGG | - | chr1_3:29495537-29495556 | Msa0113560:intron | 10.0% |
| !!! | ATTATTATGTTTTGTTTTTA+GGG | - | chr1_3:29495538-29495557 | Msa0113560:intron | 10.0% |
| !!! | TATTATTATGTTTTGTTTTT+AGG | - | chr1_3:29495537-29495556 | Msa0113560:intron | 10.0% |
| !!! | ATTATTATGTTTTGTTTTTA+GGG | - | chr1_3:29495538-29495557 | Msa0113560:intron | 10.0% |
| !!! | TATTATTATGTTTTGTTTTT+AGG | - | chr1_3:29495537-29495556 | Msa0113560:intron | 10.0% |
| !!! | ATTATTATGTTTTGTTTTTA+GGG | - | chr1_3:29495538-29495557 | Msa0113560:intron | 10.0% |
| !! | AACATAATAATAAGAATGAT+TGG | + | chr1_3:29495612-29495631 | None:intergenic | 15.0% |
| !! | AACATAATAATAAGAATGAT+TGG | + | chr1_3:29495612-29495631 | None:intergenic | 15.0% |
| !!! | ACAAAATGATTTTGTGATAA+TGG | - | chr1_3:29495429-29495448 | Msa0113560:intron | 20.0% |
| !!! | ACAAAATGATTTTGTGATAA+TGG | - | chr1_3:29495429-29495448 | Msa0113560:intron | 20.0% |
| ! | TCAATTAATTCAAAGTTGAG+AGG | + | chr1_3:29495297-29495316 | None:intergenic | 25.0% |
| ! | TTGCTAACTATAGAAAGAAA+TGG | - | chr1_3:29495379-29495398 | Msa0113560:intron | 25.0% |
| !!! | TAAGTGTCATTTAGTGATAT+TGG | - | chr1_3:29495465-29495484 | Msa0113560:intron | 25.0% |
| !!! | AAGTGTCATTTAGTGATATT+GGG | - | chr1_3:29495466-29495485 | Msa0113560:intron | 25.0% |
| ! | TGTAAAGCTTTCAAAATACA+AGG | - | chr1_3:29495793-29495812 | Msa0113560:intron | 25.0% |
| ! | TAATCCTCTCTTTCATTTAT+AGG | - | chr1_3:29495896-29495915 | Msa0113560:intron | 25.0% |
| ! | AATCCTCTCTTTCATTTATA+GGG | - | chr1_3:29495897-29495916 | Msa0113560:intron | 25.0% |
| !!! | AGTTTTGGAAACAAATGAAA+AGG | - | chr1_3:29495972-29495991 | Msa0113560:intron | 25.0% |
| ! | TCAATTAATTCAAAGTTGAG+AGG | + | chr1_3:29495297-29495316 | None:intergenic | 25.0% |
| ! | TTGCTAACTATAGAAAGAAA+TGG | - | chr1_3:29495379-29495398 | Msa0113560:intron | 25.0% |
| !!! | TAAGTGTCATTTAGTGATAT+TGG | - | chr1_3:29495465-29495484 | Msa0113560:intron | 25.0% |
| !!! | AAGTGTCATTTAGTGATATT+GGG | - | chr1_3:29495466-29495485 | Msa0113560:intron | 25.0% |
| ! | TGTAAAGCTTTCAAAATACA+AGG | - | chr1_3:29495793-29495812 | Msa0113560:intron | 25.0% |
| ! | TAATCCTCTCTTTCATTTAT+AGG | - | chr1_3:29495896-29495915 | Msa0113560:intron | 25.0% |
| ! | AATCCTCTCTTTCATTTATA+GGG | - | chr1_3:29495897-29495916 | Msa0113560:intron | 25.0% |
| !!! | AGTTTTGGAAACAAATGAAA+AGG | - | chr1_3:29495972-29495991 | Msa0113560:intron | 25.0% |
| AAGGAATGCAATAAGACATT+GGG | - | chr1_3:29495249-29495268 | Msa0113560:CDS | 30.0% | |
| TCTAACTTTCATCACATTCA+TGG | + | chr1_3:29495340-29495359 | None:intergenic | 30.0% | |
| TCTTTCTATAGTTAGCAAAG+TGG | + | chr1_3:29495377-29495396 | None:intergenic | 30.0% | |
| AATGGTACGATAGATAAGTA+AGG | - | chr1_3:29495397-29495416 | Msa0113560:intron | 30.0% | |
| ATGGTACGATAGATAAGTAA+GGG | - | chr1_3:29495398-29495417 | Msa0113560:intron | 30.0% | |
| !! | AGTGTCATTTAGTGATATTG+GGG | - | chr1_3:29495467-29495486 | Msa0113560:intron | 30.0% |
| AAGAATGAAAGTGATGATCA+TGG | + | chr1_3:29495518-29495537 | None:intergenic | 30.0% | |
| TAGTGTTGTGATTCCTATTA+AGG | - | chr1_3:29495578-29495597 | Msa0113560:intron | 30.0% | |
| AGTGTTGTGATTCCTATTAA+GGG | - | chr1_3:29495579-29495598 | Msa0113560:intron | 30.0% | |
| ! | TAGTGTTGAGATTCCTATTA+AGG | - | chr1_3:29495661-29495680 | Msa0113560:intron | 30.0% |
| ! | AGTGTTGAGATTCCTATTAA+GGG | - | chr1_3:29495662-29495681 | Msa0113560:intron | 30.0% |
| !! | CCACTTTAACTTTTGGATTT+TGG | + | chr1_3:29495695-29495714 | None:intergenic | 30.0% |
| CCAAAATCCAAAAGTTAAAG+TGG | - | chr1_3:29495692-29495711 | Msa0113560:intron | 30.0% | |
| !!! | AACAATGCCACTTTAACTTT+TGG | + | chr1_3:29495702-29495721 | None:intergenic | 30.0% |
| AAAAGTTAAAGTGGCATTGT+TGG | - | chr1_3:29495701-29495720 | Msa0113560:intron | 30.0% | |
| ! | CTTTGTTTCTTTGATGTGTT+TGG | - | chr1_3:29495833-29495852 | Msa0113560:intron | 30.0% |
| ATCCTCTCTTTCATTTATAG+GGG | - | chr1_3:29495898-29495917 | Msa0113560:intron | 30.0% | |
| GGAAACAAATGAAAAGGAAT+TGG | - | chr1_3:29495978-29495997 | Msa0113560:intron | 30.0% | |
| TCATGAAACAAGTCATCAAA+TGG | - | chr1_3:29496001-29496020 | Msa0113560:CDS | 30.0% | |
| AAGGAATGCAATAAGACATT+GGG | - | chr1_3:29495249-29495268 | Msa0113560:CDS | 30.0% | |
| TCTAACTTTCATCACATTCA+TGG | + | chr1_3:29495340-29495359 | None:intergenic | 30.0% | |
| TCTTTCTATAGTTAGCAAAG+TGG | + | chr1_3:29495377-29495396 | None:intergenic | 30.0% | |
| AATGGTACGATAGATAAGTA+AGG | - | chr1_3:29495397-29495416 | Msa0113560:intron | 30.0% | |
| ATGGTACGATAGATAAGTAA+GGG | - | chr1_3:29495398-29495417 | Msa0113560:intron | 30.0% | |
| !! | AGTGTCATTTAGTGATATTG+GGG | - | chr1_3:29495467-29495486 | Msa0113560:intron | 30.0% |
| AAGAATGAAAGTGATGATCA+TGG | + | chr1_3:29495518-29495537 | None:intergenic | 30.0% | |
| TAGTGTTGTGATTCCTATTA+AGG | - | chr1_3:29495578-29495597 | Msa0113560:intron | 30.0% | |
| AGTGTTGTGATTCCTATTAA+GGG | - | chr1_3:29495579-29495598 | Msa0113560:intron | 30.0% | |
| ! | TAGTGTTGAGATTCCTATTA+AGG | - | chr1_3:29495661-29495680 | Msa0113560:intron | 30.0% |
| ! | AGTGTTGAGATTCCTATTAA+GGG | - | chr1_3:29495662-29495681 | Msa0113560:intron | 30.0% |
| !! | CCACTTTAACTTTTGGATTT+TGG | + | chr1_3:29495695-29495714 | None:intergenic | 30.0% |
| CCAAAATCCAAAAGTTAAAG+TGG | - | chr1_3:29495692-29495711 | Msa0113560:intron | 30.0% | |
| !!! | AACAATGCCACTTTAACTTT+TGG | + | chr1_3:29495702-29495721 | None:intergenic | 30.0% |
| AAAAGTTAAAGTGGCATTGT+TGG | - | chr1_3:29495701-29495720 | Msa0113560:intron | 30.0% | |
| ! | CTTTGTTTCTTTGATGTGTT+TGG | - | chr1_3:29495833-29495852 | Msa0113560:intron | 30.0% |
| ATCCTCTCTTTCATTTATAG+GGG | - | chr1_3:29495898-29495917 | Msa0113560:intron | 30.0% | |
| GGAAACAAATGAAAAGGAAT+TGG | - | chr1_3:29495978-29495997 | Msa0113560:intron | 30.0% | |
| TCATGAAACAAGTCATCAAA+TGG | - | chr1_3:29496001-29496020 | Msa0113560:CDS | 30.0% | |
| TATTGCATTCCTTGCAATGA+TGG | + | chr1_3:29495242-29495261 | None:intergenic | 35.0% | |
| CAAGGAATGCAATAAGACAT+TGG | - | chr1_3:29495248-29495267 | Msa0113560:CDS | 35.0% | |
| CAATAAGACATTGGGATGAT+GGG | - | chr1_3:29495257-29495276 | Msa0113560:CDS | 35.0% | |
| TCAAAGTTGAGAGGCTAAAT+TGG | + | chr1_3:29495288-29495307 | None:intergenic | 35.0% | |
| GCTAAGATCAGCAAAATTTC+AGG | - | chr1_3:29495752-29495771 | Msa0113560:intron | 35.0% | |
| ACAAAGCAACAAAATCACAG+AGG | + | chr1_3:29495819-29495838 | None:intergenic | 35.0% | |
| TACCCCTATAAATGAAAGAG+AGG | + | chr1_3:29495903-29495922 | None:intergenic | 35.0% | |
| ATTGTTTGTAGCAATTCTGC+AGG | - | chr1_3:29495943-29495962 | Msa0113560:intron | 35.0% | |
| ! | TTCTGCAGGTATGAAAGTTT+TGG | - | chr1_3:29495957-29495976 | Msa0113560:intron | 35.0% |
| AAACAAGTCATCAAATGGAC+TGG | - | chr1_3:29496006-29496025 | Msa0113560:CDS | 35.0% | |
| GCAAGGTCAATACTATGTTT+GGG | + | chr1_3:29496035-29496054 | None:intergenic | 35.0% | |
| TGCAAGGTCAATACTATGTT+TGG | + | chr1_3:29496036-29496055 | None:intergenic | 35.0% | |
| TATTGCATTCCTTGCAATGA+TGG | + | chr1_3:29495242-29495261 | None:intergenic | 35.0% | |
| CAAGGAATGCAATAAGACAT+TGG | - | chr1_3:29495248-29495267 | Msa0113560:CDS | 35.0% | |
| CAATAAGACATTGGGATGAT+GGG | - | chr1_3:29495257-29495276 | Msa0113560:CDS | 35.0% | |
| TCAAAGTTGAGAGGCTAAAT+TGG | + | chr1_3:29495288-29495307 | None:intergenic | 35.0% | |
| GCTAAGATCAGCAAAATTTC+AGG | - | chr1_3:29495752-29495771 | Msa0113560:intron | 35.0% | |
| ACAAAGCAACAAAATCACAG+AGG | + | chr1_3:29495819-29495838 | None:intergenic | 35.0% | |
| TACCCCTATAAATGAAAGAG+AGG | + | chr1_3:29495903-29495922 | None:intergenic | 35.0% | |
| ATTGTTTGTAGCAATTCTGC+AGG | - | chr1_3:29495943-29495962 | Msa0113560:intron | 35.0% | |
| ! | TTCTGCAGGTATGAAAGTTT+TGG | - | chr1_3:29495957-29495976 | Msa0113560:intron | 35.0% |
| AAACAAGTCATCAAATGGAC+TGG | - | chr1_3:29496006-29496025 | Msa0113560:CDS | 35.0% | |
| GCAAGGTCAATACTATGTTT+GGG | + | chr1_3:29496035-29496054 | None:intergenic | 35.0% | |
| TGCAAGGTCAATACTATGTT+TGG | + | chr1_3:29496036-29496055 | None:intergenic | 35.0% | |
| ! | GCAATCCTCACAGTTTTCTT+CGG | - | chr1_3:29495202-29495221 | Msa0113560:CDS | 40.0% |
| GCAATAAGACATTGGGATGA+TGG | - | chr1_3:29495256-29495275 | Msa0113560:CDS | 40.0% | |
| GTCATTTAGTGATATTGGGG+TGG | - | chr1_3:29495470-29495489 | Msa0113560:intron | 40.0% | |
| ATTGGAGCAACACCCTTAAT+AGG | + | chr1_3:29495594-29495613 | None:intergenic | 40.0% | |
| ! | TTTGGAGCAACACCCTTAAT+AGG | + | chr1_3:29495677-29495696 | None:intergenic | 40.0% |
| GTGAACATAAGCGAAATGCA+AGG | - | chr1_3:29495728-29495747 | Msa0113560:intron | 40.0% | |
| CTTCATAGACAACACATGCA+AGG | + | chr1_3:29496052-29496071 | None:intergenic | 40.0% | |
| GTCTATGAAGATCAAAGTGC+AGG | - | chr1_3:29496062-29496081 | Msa0113560:CDS | 40.0% | |
| ! | GCAATCCTCACAGTTTTCTT+CGG | - | chr1_3:29495202-29495221 | Msa0113560:CDS | 40.0% |
| GCAATAAGACATTGGGATGA+TGG | - | chr1_3:29495256-29495275 | Msa0113560:CDS | 40.0% | |
| GTCATTTAGTGATATTGGGG+TGG | - | chr1_3:29495470-29495489 | Msa0113560:intron | 40.0% | |
| ATTGGAGCAACACCCTTAAT+AGG | + | chr1_3:29495594-29495613 | None:intergenic | 40.0% | |
| ! | TTTGGAGCAACACCCTTAAT+AGG | + | chr1_3:29495677-29495696 | None:intergenic | 40.0% |
| GTGAACATAAGCGAAATGCA+AGG | - | chr1_3:29495728-29495747 | Msa0113560:intron | 40.0% | |
| CTTCATAGACAACACATGCA+AGG | + | chr1_3:29496052-29496071 | None:intergenic | 40.0% | |
| GTCTATGAAGATCAAAGTGC+AGG | - | chr1_3:29496062-29496081 | Msa0113560:CDS | 40.0% | |
| TCTACTGCACCATCATTGCA+AGG | - | chr1_3:29495230-29495249 | Msa0113560:CDS | 45.0% | |
| !! | AGACATTGGGATGATGGGTT+TGG | - | chr1_3:29495262-29495281 | Msa0113560:CDS | 45.0% |
| TCTACTGCACCATCATTGCA+AGG | - | chr1_3:29495230-29495249 | Msa0113560:CDS | 45.0% | |
| !! | AGACATTGGGATGATGGGTT+TGG | - | chr1_3:29495262-29495281 | Msa0113560:CDS | 45.0% |
| ACACGCCGAAGAAAACTGTG+AGG | + | chr1_3:29495210-29495229 | None:intergenic | 50.0% | |
| ACACGCCGAAGAAAACTGTG+AGG | + | chr1_3:29495210-29495229 | None:intergenic | 50.0% | |
| ! | ATGTCTGGTGTAGCGGAGGT+AGG | - | chr1_3:29495166-29495185 | Msa0113560:exon | 55.0% |
| ! | TGTCTGGTGTAGCGGAGGTA+GGG | - | chr1_3:29495167-29495186 | Msa0113560:exon | 55.0% |
| ! | ATGTCTGGTGTAGCGGAGGT+AGG | - | chr1_3:29495166-29495185 | Msa0113560:exon | 55.0% |
| ! | TGTCTGGTGTAGCGGAGGTA+GGG | - | chr1_3:29495167-29495186 | Msa0113560:exon | 55.0% |
| ! | TGTAGCGGAGGTAGGGAGGT+GGG | - | chr1_3:29495174-29495193 | Msa0113560:CDS | 60.0% |
| ! | TGTAGCGGAGGTAGGGAGGT+GGG | - | chr1_3:29495174-29495193 | Msa0113560:CDS | 60.0% |
| ! | CTGGTGTAGCGGAGGTAGGG+AGG | - | chr1_3:29495170-29495189 | Msa0113560:exon | 65.0% |
| ! | GTGTAGCGGAGGTAGGGAGG+TGG | - | chr1_3:29495173-29495192 | Msa0113560:CDS | 65.0% |
| ! | CTGGTGTAGCGGAGGTAGGG+AGG | - | chr1_3:29495170-29495189 | Msa0113560:exon | 65.0% |
| ! | GTGTAGCGGAGGTAGGGAGG+TGG | - | chr1_3:29495173-29495192 | Msa0113560:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 29495166 | 29496098 | 29495166 | ID=Msa0113560;Name=Msa0113560 |
| chr1_3 | mRNA | 29495166 | 29496098 | 29495166 | ID=Msa0113560-mRNA-1;Parent=Msa0113560;Name=Msa0113560-mRNA-1;_AED=0.36;_eAED=0.63;_QI=0|0|0.5|1|1|1|2|6|83 |
| chr1_3 | exon | 29495166 | 29495310 | 29495166 | ID=Msa0113560-mRNA-1:exon:9805;Parent=Msa0113560-mRNA-1 |
| chr1_3 | exon | 29495986 | 29496098 | 29495986 | ID=Msa0113560-mRNA-1:exon:9804;Parent=Msa0113560-mRNA-1 |
| chr1_3 | CDS | 29495986 | 29496098 | 29495986 | ID=Msa0113560-mRNA-1:cds;Parent=Msa0113560-mRNA-1 |
| chr1_3 | CDS | 29495172 | 29495310 | 29495172 | ID=Msa0113560-mRNA-1:cds;Parent=Msa0113560-mRNA-1 |
| chr1_3 | three_prime_UTR | 29495166 | 29495171 | 29495166 | ID=Msa0113560-mRNA-1:three_prime_utr;Parent=Msa0113560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
