AlfalfaGEDB | Msa0044210

M. sativa cultivar zhongmu-4 / Msa0044210

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044210	KEH44329.1	96.875	64	2	0	1	64	1	64	1.06e-31	126

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044210	Msa0050430	0.804308	2.299466e-49	-8.615850e-47
Msa0044210	Msa0078660	0.805816	1.111759e-49	-8.615850e-47
Msa0044210	Msa0105420	0.802291	6.014217e-49	-8.615850e-47
Msa0044210	Msa0126380	0.801198	1.008314e-48	-8.615850e-47
Msa0044210	Msa0183590	0.932362	9.545934e-95	-8.615850e-47
Msa0044210	Msa0183600	0.881293	2.706437e-70	-8.615850e-47
Msa0044210	Msa0188630	0.812564	3.979664e-51	-8.615850e-47
Msa0044210	Msa0192060	0.829597	4.708595e-55	-8.615850e-47
Msa0044210	Msa0230770	0.808247	3.401867e-50	-8.615850e-47
Msa0044210	Msa0239510	0.806308	8.759803e-50	-8.615850e-47
Msa0044210	Msa0270270	0.812483	4.145564e-51	-8.615850e-47
Msa0044210	Msa0335040	0.802280	6.046383e-49	-8.615850e-47
Msa0044210	Msa0344830	0.811233	7.755720e-51	-8.615850e-47
Msa0044210	Msa0347360	0.803624	3.190093e-49	-8.615850e-47
Msa0044210	Msa0369570	0.805770	1.136926e-49	-8.615850e-47
Msa0044210	Msa0376590	0.808244	3.405916e-50	-8.615850e-47
Msa0044210	Msa0377530	0.812160	4.875639e-51	-8.615850e-47
Msa0044210	Msa0380040	0.804026	2.632235e-49	-8.615850e-47
Msa0044210	Msa0392070	0.803567	3.278178e-49	-8.615850e-47
Msa0044210	Msa0393680	0.807745	4.349731e-50	-8.615850e-47
Msa0044210	Msa0426330	0.812075	5.086855e-51	-8.615850e-47
Msa0044210	Msa0473240	0.812249	4.661617e-51	-8.615850e-47
Msa0044210	Msa0480320	0.804894	1.734941e-49	-8.615850e-47
Msa0044210	Msa0506890	0.813368	2.651565e-51	-8.615850e-47
Msa0044210	Msa0516370	0.816304	5.926075e-52	-8.615850e-47
Msa0044210	Msa0517490	0.825102	5.630236e-54	-8.615850e-47
Msa0044210	Msa0526890	0.801221	9.972334e-49	-8.615850e-47
Msa0044210	Msa0535030	0.810274	1.250706e-50	-8.615850e-47
Msa0044210	Msa0535060	0.813169	2.932838e-51	-8.615850e-47
Msa0044210	Msa0591770	0.805671	1.192728e-49	-8.615850e-47
Msa0044210	Msa0620810	0.800218	1.598068e-48	-8.615850e-47
Msa0044210	Msa0638280	0.828447	8.946258e-55	-8.615850e-47
Msa0044210	Msa0638320	0.827256	1.729948e-54	-8.615850e-47
Msa0044210	Msa0669850	0.802866	4.577674e-49	-8.615850e-47
Msa0044210	Msa0677270	0.818946	1.503224e-52	-8.615850e-47
Msa0044210	Msa0689010	0.805172	1.517790e-49	-8.615850e-47
Msa0044210	Msa0693380	0.810867	9.312334e-51	-8.615850e-47
Msa0044210	Msa0715110	0.826188	3.110857e-54	-8.615850e-47
Msa0044210	Msa0754720	-0.814133	1.799592e-51	-8.615850e-47
Msa0044210	Msa0881020	0.803290	3.740299e-49	-8.615850e-47
Msa0044210	Msa0893810	0.830808	2.384438e-55	-8.615850e-47
Msa0044210	Msa0908050	0.816309	5.911342e-52	-8.615850e-47
Msa0044210	Msa0937670	0.806514	7.927130e-50	-8.615850e-47
Msa0044210	Msa0959010	0.805511	1.288698e-49	-8.615850e-47
Msa0044210	Msa0969570	0.821781	3.363568e-53	-8.615850e-47
Msa0044210	Msa0990960	0.800228	1.590648e-48	-8.615850e-47
Msa0044210	Msa0993530	0.840219	9.917516e-58	-8.615850e-47
Msa0044210	Msa1026760	0.810947	8.945158e-51	-8.615850e-47
Msa0044210	Msa1026790	0.807191	5.701109e-50	-8.615850e-47
Msa0044210	Msa1046300	0.803504	3.377481e-49	-8.615850e-47
Msa0044210	Msa1084260	0.819501	1.123494e-52	-8.615850e-47
Msa0044210	Msa1130210	-0.808885	2.485525e-50	-8.615850e-47
Msa0044210	Msa1185540	0.829447	5.121912e-55	-8.615850e-47
Msa0044210	Msa1206020	0.802078	6.653406e-49	-8.615850e-47
Msa0044210	Msa1219430	0.801334	9.458685e-49	-8.615850e-47
Msa0044210	Msa1265070	0.811033	8.571392e-51	-8.615850e-47
Msa0044210	Msa1310210	0.809683	1.676048e-50	-8.615850e-47
Msa0044210	Msa1315870	0.800398	1.468837e-48	-8.615850e-47
Msa0044210	Msa1362510	0.834669	2.621859e-56	-8.615850e-47
Msa0044210	Msa1369530	0.806672	7.341391e-50	-8.615850e-47
Msa0044210	Msa1425250	0.815127	1.084112e-51	-8.615850e-47
Msa0044210	Msa1441190	0.807556	4.771724e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044210	MtrunA17_Chr1g0210821	94.444	54	3	0	1	54	1	54	2.31e-15	68.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 12 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAACTTGCTTGGTGTTCC+AGG	0.299965	1_1:+75703922	None:intergenic
TTCTGAGCTGGTGCAGCAGC+TGG	0.324083	1_1:+75703961	None:intergenic
TGTTGTTGATTCATCGGATT+CGG	0.387615	1_1:+75704018	None:intergenic
GAATGCTGTTGTTGATTCAT+CGG	0.467905	1_1:+75704012	None:intergenic
TGTGATTCTGTCAATCCCGC+TGG	0.500685	1_1:+75703847	None:intergenic
TGCATGATTGTGTTCCCAGC+GGG	0.524781	1_1:-75703862	Msa0044210:CDS
ACTTGCTTGGTGTTCCAGGT+TGG	0.540376	1_1:+75703926	None:intergenic
AAATAGTTGAGAAACTTGCT+TGG	0.585892	1_1:+75703913	None:intergenic
GTGATTCTGTCAATCCCGCT+GGG	0.586420	1_1:+75703848	None:intergenic
GGAGTTGCAGTTGATGAAGA+TGG	0.614276	1_1:+75703982	None:intergenic
GTGCATGATTGTGTTCCCAG+CGG	0.727375	1_1:-75703863	Msa0044210:CDS
GTTGCAGTTGATGAAGATGG+TGG	0.743712	1_1:+75703985	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATAGTTGAGAAACTTGCT+TGG	+	chr1_1:75704002-75704021	None:intergenic	30.0%
!	ACTTTTTGGATTCAGAGAAG+AGG	-	chr1_1:75703869-75703888	Msa0044210:CDS	35.0%
!!	TGTTGTTGATTCATCGGATT+CGG	+	chr1_1:75703897-75703916	None:intergenic	35.0%
!!	GAATGCTGTTGTTGATTCAT+CGG	+	chr1_1:75703903-75703922	None:intergenic	35.0%
!	TTTCTCTTTTTCTTCTGAGC+TGG	+	chr1_1:75703966-75703985	None:intergenic	35.0%
	AAGAAAAAGAGAAACCAACC+TGG	-	chr1_1:75703972-75703991	Msa0044210:CDS	35.0%
!!	TCTTCCTCAGCATCACTTTT+TGG	-	chr1_1:75703855-75703874	Msa0044210:CDS	40.0%
	GAATCCAAAAAGTGATGCTG+AGG	+	chr1_1:75703862-75703881	None:intergenic	40.0%
!!	GTTGCAGTTGATGAAGATGG+TGG	+	chr1_1:75703930-75703949	None:intergenic	45.0%
!!	GGAGTTGCAGTTGATGAAGA+TGG	+	chr1_1:75703933-75703952	None:intergenic	45.0%
!!	AGAAACTTGCTTGGTGTTCC+AGG	+	chr1_1:75703993-75704012	None:intergenic	45.0%
!!	ACTTGCTTGGTGTTCCAGGT+TGG	+	chr1_1:75703989-75704008	None:intergenic	50.0%
	GTGCATGATTGTGTTCCCAG+CGG	-	chr1_1:75704049-75704068	Msa0044210:CDS	50.0%
	TGCATGATTGTGTTCCCAGC+GGG	-	chr1_1:75704050-75704069	Msa0044210:CDS	50.0%
	GTGATTCTGTCAATCCCGCT+GGG	+	chr1_1:75704067-75704086	None:intergenic	50.0%
	TGTGATTCTGTCAATCCCGC+TGG	+	chr1_1:75704068-75704087	None:intergenic	50.0%
	TTCTGAGCTGGTGCAGCAGC+TGG	+	chr1_1:75703954-75703973	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	75703843	75704091	75703843	ID=Msa0044210;Name=Msa0044210
chr1_1	mRNA	75703843	75704091	75703843	ID=Msa0044210-mRNA-1;Parent=Msa0044210;Name=Msa0044210-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|82
chr1_1	exon	75703843	75704091	75703843	ID=Msa0044210-mRNA-1:exon:25653;Parent=Msa0044210-mRNA-1
chr1_1	CDS	75703843	75704091	75703843	ID=Msa0044210-mRNA-1:cds;Parent=Msa0044210-mRNA-1

Gene Sequence	>Msa0044210 ATGGCTGCATCATCTTCCTCAGCATCACTTTTTGGATTCAGAGAAGAGGATCCGAATCCGATGAATCAACAACAGCATTCTTTGCCACCATCTTCATCAACTGCAACTCCAGCTGCTGCACCAGCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAGCAAGTTTCTCAACTATTTTATTGCAAATTTATGTTTAATCACTAAGTGCATGATTGTGTTCCCAGCGGGATTGACAGAATCACAGTGA
Protein sequence	>Msa0044210 MAASSSSASLFGFREEDPNPMNQQQHSLPPSSSTATPAAAPAQKKKRNQPGTPSKFLNYFIANLCLITKCMIVFPAGLTESQ*