Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172510 | XP_013468967.1 | 95.699 | 186 | 5 | 2 | 1 | 185 | 1 | 184 | 6.34e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172510 | sp|P26569|H12_ARATH | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 5.94e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172510 | A0A072VLX5 | 95.699 | 186 | 5 | 2 | 1 | 185 | 1 | 184 | 3.03e-102 | 301 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0172510 | 0.810392 | 1.179574e-50 | -8.615850e-47 |
| Msa0019930 | Msa0172510 | 0.812869 | 3.412322e-51 | -8.615850e-47 |
| Msa0030070 | Msa0172510 | 0.828037 | 1.123029e-54 | -8.615850e-47 |
| Msa0032230 | Msa0172510 | 0.889606 | 2.083805e-73 | -8.615850e-47 |
| Msa0034830 | Msa0172510 | 0.818553 | 1.846094e-52 | -8.615850e-47 |
| Msa0068150 | Msa0172510 | 0.809313 | 2.012220e-50 | -8.615850e-47 |
| Msa0093210 | Msa0172510 | 0.810784 | 9.705434e-51 | -8.615850e-47 |
| Msa0125590 | Msa0172510 | 0.827647 | 1.393737e-54 | -8.615850e-47 |
| Msa0127270 | Msa0172510 | 0.830293 | 3.186037e-55 | -8.615850e-47 |
| Msa0127680 | Msa0172510 | 0.805848 | 1.094760e-49 | -8.615850e-47 |
| Msa0143670 | Msa0172510 | 0.802626 | 5.131478e-49 | -8.615850e-47 |
| Msa0170070 | Msa0172510 | 0.804548 | 2.049366e-49 | -8.615850e-47 |
| Msa0172480 | Msa0172510 | 0.942066 | 1.385246e-101 | -8.615850e-47 |
| Msa0172510 | Msa0190730 | 0.807213 | 5.641227e-50 | -8.615850e-47 |
| Msa0172510 | Msa0194630 | 0.828048 | 1.116594e-54 | -8.615850e-47 |
| Msa0172510 | Msa0236820 | 0.810836 | 9.454321e-51 | -8.615850e-47 |
| Msa0172510 | Msa0314870 | 0.805092 | 1.576982e-49 | -8.615850e-47 |
| Msa0172510 | Msa0367150 | 0.812183 | 4.819537e-51 | -8.615850e-47 |
| Msa0172510 | Msa0373500 | 0.806629 | 7.497505e-50 | -8.615850e-47 |
| Msa0172510 | Msa0380490 | 0.843267 | 1.556801e-58 | -8.615850e-47 |
| Msa0172510 | Msa0382230 | 0.821184 | 4.621603e-53 | -8.615850e-47 |
| Msa0172510 | Msa0383000 | 0.800678 | 1.287383e-48 | -8.615850e-47 |
| Msa0172510 | Msa0409830 | 0.810495 | 1.120612e-50 | -8.615850e-47 |
| Msa0172510 | Msa0412130 | 0.822905 | 1.844003e-53 | -8.615850e-47 |
| Msa0172510 | Msa0430000 | 0.822423 | 2.387675e-53 | -8.615850e-47 |
| Msa0172510 | Msa0432010 | 0.802909 | 4.484688e-49 | -8.615850e-47 |
| Msa0172510 | Msa0456670 | 0.810847 | 9.403761e-51 | -8.615850e-47 |
| Msa0172510 | Msa0468620 | 0.827160 | 1.823969e-54 | -8.615850e-47 |
| Msa0172510 | Msa0500570 | 0.824888 | 6.322851e-54 | -8.615850e-47 |
| Msa0172510 | Msa0506540 | 0.818503 | 1.894748e-52 | -8.615850e-47 |
| Msa0172510 | Msa0514500 | 0.825090 | 5.664888e-54 | -8.615850e-47 |
| Msa0172510 | Msa0520680 | 0.819265 | 1.271753e-52 | -8.615850e-47 |
| Msa0172510 | Msa0520870 | 0.801081 | 1.065275e-48 | -8.615850e-47 |
| Msa0172510 | Msa0521680 | 0.810416 | 1.165473e-50 | -8.615850e-47 |
| Msa0172510 | Msa0531960 | 0.817280 | 3.579898e-52 | -8.615850e-47 |
| Msa0172510 | Msa0586200 | 0.802824 | 4.670955e-49 | -8.615850e-47 |
| Msa0172510 | Msa0603410 | 0.812104 | 5.014056e-51 | -8.615850e-47 |
| Msa0172510 | Msa0625620 | 0.827948 | 1.179921e-54 | -8.615850e-47 |
| Msa0172510 | Msa0648760 | 0.804935 | 1.700873e-49 | -8.615850e-47 |
| Msa0172510 | Msa0659150 | 0.835539 | 1.582571e-56 | -8.615850e-47 |
| Msa0172510 | Msa0737020 | 0.822456 | 2.346261e-53 | -8.615850e-47 |
| Msa0172510 | Msa0740710 | 0.820153 | 7.972140e-53 | -8.615850e-47 |
| Msa0172510 | Msa0758590 | 0.810929 | 9.028214e-51 | -8.615850e-47 |
| Msa0172510 | Msa0778600 | 0.831815 | 1.348031e-55 | -8.615850e-47 |
| Msa0172510 | Msa0780910 | 0.805868 | 1.084510e-49 | -8.615850e-47 |
| Msa0172510 | Msa0821160 | 0.804381 | 2.219948e-49 | -8.615850e-47 |
| Msa0172510 | Msa0866530 | 0.827652 | 1.390026e-54 | -8.615850e-47 |
| Msa0172510 | Msa0880280 | 0.819710 | 1.006856e-52 | -8.615850e-47 |
| Msa0172510 | Msa0909760 | 0.801698 | 7.965401e-49 | -8.615850e-47 |
| Msa0172510 | Msa1000780 | 0.801896 | 7.253640e-49 | -8.615850e-47 |
| Msa0172510 | Msa1008680 | 0.803274 | 3.768981e-49 | -8.615850e-47 |
| Msa0172510 | Msa1074150 | 0.803351 | 3.633636e-49 | -8.615850e-47 |
| Msa0172510 | Msa1162880 | 0.801799 | 7.592532e-49 | -8.615850e-47 |
| Msa0172510 | Msa1188790 | 0.830920 | 2.237459e-55 | -8.615850e-47 |
| Msa0172510 | Msa1211640 | 0.805979 | 1.027473e-49 | -8.615850e-47 |
| Msa0172510 | Msa1219640 | 0.824833 | 6.515210e-54 | -8.615850e-47 |
| Msa0172510 | Msa1242960 | 0.817456 | 3.267233e-52 | -8.615850e-47 |
| Msa0172510 | Msa1254540 | 0.807350 | 5.277690e-50 | -8.615850e-47 |
| Msa0172510 | Msa1266620 | 0.830652 | 2.602398e-55 | -8.615850e-47 |
| Msa0172510 | Msa1267150 | 0.815107 | 1.095379e-51 | -8.615850e-47 |
| Msa0172510 | Msa1293570 | 0.803391 | 3.564778e-49 | -8.615850e-47 |
| Msa0172510 | Msa1293610 | 0.816367 | 5.736745e-52 | -8.615850e-47 |
| Msa0172510 | Msa1305780 | 0.805670 | 1.193463e-49 | -8.615850e-47 |
| Msa0172510 | Msa1333650 | 0.828319 | 9.602415e-55 | -8.615850e-47 |
| Msa0172510 | Msa1339230 | 0.810956 | 8.905361e-51 | -8.615850e-47 |
| Msa0172510 | Msa1368750 | 0.800190 | 1.618793e-48 | -8.615850e-47 |
| Msa0172510 | Msa1381470 | 0.816823 | 4.533064e-52 | -8.615850e-47 |
| Msa0172510 | Msa1387500 | 0.808994 | 2.355791e-50 | -8.615850e-47 |
| Msa0172510 | Msa1399190 | 0.806340 | 8.628097e-50 | -8.615850e-47 |
| Msa0172510 | Msa1428690 | 0.802870 | 4.568497e-49 | -8.615850e-47 |
| Msa0172510 | Msa1435100 | 0.823157 | 1.611492e-53 | -8.615850e-47 |
| Msa0172510 | Msa1439730 | 0.829736 | 4.356151e-55 | -8.615850e-47 |
| Msa0172510 | Msa1441960 | 0.804743 | 1.865479e-49 | -8.615850e-47 |
| Msa0172510 | Msa1444930 | 0.807100 | 5.959515e-50 | -8.615850e-47 |
| Msa0172510 | Msa1454010 | 0.812447 | 4.221310e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172510 | MtrunA17_Chr1g0190561 | 95.699 | 186 | 5 | 2 | 1 | 185 | 1 | 184 | 5.83e-106 | 301 |
| Msa0172510 | MtrunA17_Chr1g0184561 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 6.29e-27 | 102 |
| Msa0172510 | MtrunA17_Chr1g0184661 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 1.59e-26 | 101 |
| Msa0172510 | MtrunA17_Chr1g0184671 | 63.964 | 111 | 38 | 2 | 24 | 132 | 9 | 119 | 6.14e-26 | 99.4 |
| Msa0172510 | MtrunA17_Chr7g0260771 | 61.644 | 73 | 28 | 0 | 19 | 91 | 56 | 128 | 1.08e-25 | 100 |
| Msa0172510 | MtrunA17_Chr5g0405221 | 46.316 | 95 | 39 | 3 | 1 | 94 | 22 | 105 | 7.29e-18 | 76.6 |
| Msa0172510 | MtrunA17_Chr8g0372961 | 69.048 | 42 | 13 | 0 | 12 | 53 | 49 | 90 | 1.89e-13 | 63.2 |
| Msa0172510 | MtrunA17_Chr3g0110481 | 42.857 | 70 | 40 | 0 | 20 | 89 | 8 | 77 | 6.72e-13 | 63.9 |
| Msa0172510 | MtrunA17_Chr6g0482691 | 44.444 | 72 | 37 | 1 | 23 | 91 | 40 | 111 | 1.38e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172510 | AT2G30620.2 | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 2.38e-32 | 115 |
| Msa0172510 | AT2G30620.1 | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 6.04e-32 | 116 |
| Msa0172510 | AT1G06760.1 | 77.941 | 68 | 15 | 0 | 24 | 91 | 61 | 128 | 1.33e-23 | 94.7 |
| Msa0172510 | AT2G18050.1 | 44.094 | 127 | 62 | 3 | 14 | 131 | 8 | 134 | 4.23e-21 | 85.5 |
| Msa0172510 | AT2G18050.2 | 39.024 | 123 | 70 | 3 | 31 | 148 | 1 | 123 | 1.07e-16 | 73.2 |
Find 55 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGCTTCGCCGCTGCTTT+TGG | 0.203938 | 1_4:-57574620 | None:intergenic |
| ATTATAATTATAATATTATT+AGG | 0.230112 | 1_4:+57574846 | Msa0172510:three_prime_UTR |
| TTTGGCTTTGCGGCAGCTTT+CGG | 0.250457 | 1_4:-57574602 | None:intergenic |
| CGGCTTAGTTGCAGCCTTAC+CGG | 0.282708 | 1_4:-57574558 | None:intergenic |
| TTTGCTGTAAATTCTTTGAT+AGG | 0.309454 | 1_4:+57574877 | Msa0172510:three_prime_UTR |
| CCCTTAACACTCTTCGCTTT+CGG | 0.311339 | 1_4:-57574656 | None:intergenic |
| CTGAAGAAATCTGTGGCTTC+TGG | 0.328322 | 1_4:+57574422 | Msa0172510:CDS |
| AAACAGAAAACTAATTCATT+AGG | 0.336989 | 1_4:-57574935 | None:intergenic |
| CTTGGTCTGAGCAGCGGCGG+TGG | 0.350352 | 1_4:-57574111 | None:intergenic |
| TTCACAGCAGCTTTCGCCTT+CGG | 0.369735 | 1_4:-57574578 | None:intergenic |
| TTCGGCTTCACAACAGCTTT+AGG | 0.372527 | 1_4:-57574638 | None:intergenic |
| ACCGGAGTCTTAACACTCTT+CGG | 0.394389 | 1_4:-57574722 | None:intergenic |
| TTCTTCGCCGCTTTCTTCAC+AGG | 0.416978 | 1_4:-57574683 | None:intergenic |
| AGAATGAGTTTGCGGAATGT+TGG | 0.442341 | 1_4:-57574392 | None:intergenic |
| TTAGTTGCAGCCTTACCGGC+TGG | 0.443488 | 1_4:-57574554 | None:intergenic |
| GGAGCAGTAGCGGCCTTCAC+CGG | 0.448419 | 1_4:-57574503 | None:intergenic |
| GATGAAGAAGAATGAGTTTG+CGG | 0.452593 | 1_4:-57574400 | None:intergenic |
| GTGAGTTTGAAAGAAAGAAC+TGG | 0.455638 | 1_4:+57574314 | Msa0172510:CDS |
| CACTTCTTAGCTTTCTTCAC+CGG | 0.455761 | 1_4:-57574740 | None:intergenic |
| CCGAAAGCGAAGAGTGTTAA+GGG | 0.457605 | 1_4:+57574656 | Msa0172510:CDS |
| GCCGAAAGCGAAGAGTGTTA+AGG | 0.460757 | 1_4:+57574655 | Msa0172510:CDS |
| CGCTACTGCTCCTGCTAAGA+AGG | 0.467466 | 1_4:+57574514 | Msa0172510:CDS |
| TAGTGATGTGTGAAATTTGA+GGG | 0.475301 | 1_4:+57574791 | Msa0172510:three_prime_UTR |
| ACAGCCTTAGCCTTCTTAGC+AGG | 0.476334 | 1_4:-57574524 | None:intergenic |
| AACTCTTTCTCTCTCTAAAA+CGG | 0.479913 | 1_4:+57574041 | Msa0172510:five_prime_UTR |
| TTGGTCTGAGCAGCGGCGGT+GGG | 0.488362 | 1_4:-57574110 | None:intergenic |
| GGCGAAAACTGCTCCGGTGA+AGG | 0.508511 | 1_4:+57574490 | Msa0172510:CDS |
| TGTGAAGAAAGCGGCGAAGA+AGG | 0.511913 | 1_4:+57574685 | Msa0172510:CDS |
| TGTTACGAAGCCAGCCGGTA+AGG | 0.517257 | 1_4:+57574544 | Msa0172510:CDS |
| AGCAGCGGCGGTGGGAGACA+TGG | 0.520541 | 1_4:-57574102 | None:intergenic |
| TGAATTTCGTTATCGCGTGT+TGG | 0.523300 | 1_4:-57574343 | None:intergenic |
| CTTCAAAATCGCTCCGGCAG+CGG | 0.533005 | 1_4:+57574469 | Msa0172510:CDS |
| CATGGTTGAGACTTGAGAAT+CGG | 0.536882 | 1_4:-57574084 | None:intergenic |
| ATTCATCGAAGAGAAGCATA+AGG | 0.536890 | 1_4:+57574361 | Msa0172510:CDS |
| TGCCGCAAAGCCAAAAGCAG+CGG | 0.551299 | 1_4:+57574610 | Msa0172510:CDS |
| TGCTCCTGCTAAGAAGGCTA+AGG | 0.552889 | 1_4:+57574520 | Msa0172510:CDS |
| AAACTCCTTCAAAATCGCTC+CGG | 0.553204 | 1_4:+57574463 | Msa0172510:CDS |
| GAGAGGCTTCTTTGCTGCAG+CGG | 0.555043 | 1_4:-57574150 | None:intergenic |
| GGGCTTGGTCTGAGCAGCGG+CGG | 0.555862 | 1_4:-57574114 | None:intergenic |
| GGCAGCGGCGAAAACTGCTC+CGG | 0.555880 | 1_4:+57574484 | Msa0172510:CDS |
| ATAATTATAATATTATTAGG+AGG | 0.563101 | 1_4:+57574849 | Msa0172510:three_prime_UTR |
| GTTATTACCTCAGCGTAGGT+AGG | 0.578831 | 1_4:-57574179 | None:intergenic |
| TCTTCATCTGAAGAAATCTG+TGG | 0.580993 | 1_4:+57574415 | Msa0172510:CDS |
| CTTGGGCTTGGTCTGAGCAG+CGG | 0.582303 | 1_4:-57574117 | None:intergenic |
| GGCTTCTGGCAAGCTCGTGA+AGG | 0.588674 | 1_4:+57574436 | Msa0172510:CDS |
| GCCGAAGAGTGTTAAGACTC+CGG | 0.591306 | 1_4:+57574721 | Msa0172510:CDS |
| ATTTGTTATTACCTCAGCGT+AGG | 0.593667 | 1_4:-57574183 | None:intergenic |
| TTAGTGATGTGTGAAATTTG+AGG | 0.614228 | 1_4:+57574790 | Msa0172510:three_prime_UTR |
| AAGGCTGTTACGAAGCCAGC+CGG | 0.614320 | 1_4:+57574539 | Msa0172510:CDS |
| TAAGGCTGCAACTAAGCCGA+AGG | 0.619656 | 1_4:+57574562 | Msa0172510:CDS |
| CTTCTTAGCAGGAGCAGTAG+CGG | 0.626747 | 1_4:-57574513 | None:intergenic |
| GAAGAAAGCGGCGAAGAAGG+TGG | 0.636706 | 1_4:+57574688 | Msa0172510:CDS |
| GCGTAGGTAGGATGAGAGAG+AGG | 0.655352 | 1_4:-57574167 | None:intergenic |
| CTCTCATCCTACCTACGCTG+AGG | 0.671811 | 1_4:+57574172 | Msa0172510:CDS |
| GGGTACGCCTGTGAAGAAAG+CGG | 0.711847 | 1_4:+57574676 | Msa0172510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATAATATTATT+AGG | + | chr1_4:57574846-57574865 | Msa0172510:three_prime_UTR | 0.0% |
| !! | ATTATAATTATAATATTATT+AGG | + | chr1_4:57574846-57574865 | Msa0172510:three_prime_UTR | 0.0% |
| !! | ATAATTATAATATTATTAGG+AGG | + | chr1_4:57574849-57574868 | Msa0172510:three_prime_UTR | 10.0% |
| !! | ATAATTATAATATTATTAGG+AGG | + | chr1_4:57574849-57574868 | Msa0172510:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTGTAGATGATAA+CGG | + | chr1_4:57574283-57574302 | Msa0172510:intron | 15.0% |
| !!! | TTTTTTTTTGTAGATGATAA+CGG | + | chr1_4:57574283-57574302 | Msa0172510:intron | 15.0% |
| !! | TGAAAAAATTAGGGTTTAAT+TGG | + | chr1_4:57574761-57574780 | Msa0172510:exon | 20.0% |
| !! | GAAAAAATTAGGGTTTAATT+GGG | + | chr1_4:57574762-57574781 | Msa0172510:exon | 20.0% |
| !! | AAAAAATTAGGGTTTAATTG+GGG | + | chr1_4:57574763-57574782 | Msa0172510:exon | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | - | chr1_4:57574938-57574957 | None:intergenic | 20.0% |
| !! | TGAAAAAATTAGGGTTTAAT+TGG | + | chr1_4:57574761-57574780 | Msa0172510:exon | 20.0% |
| !! | GAAAAAATTAGGGTTTAATT+GGG | + | chr1_4:57574762-57574781 | Msa0172510:exon | 20.0% |
| !! | AAAAAATTAGGGTTTAATTG+GGG | + | chr1_4:57574763-57574782 | Msa0172510:exon | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | - | chr1_4:57574938-57574957 | None:intergenic | 20.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | + | chr1_4:57574751-57574770 | Msa0172510:exon | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | + | chr1_4:57574752-57574771 | Msa0172510:exon | 25.0% |
| ! | AAAAATTAGGGTTTAATTGG+GGG | + | chr1_4:57574764-57574783 | Msa0172510:three_prime_UTR | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | + | chr1_4:57574877-57574896 | Msa0172510:three_prime_UTR | 25.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | + | chr1_4:57574751-57574770 | Msa0172510:exon | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | + | chr1_4:57574752-57574771 | Msa0172510:exon | 25.0% |
| ! | AAAAATTAGGGTTTAATTGG+GGG | + | chr1_4:57574764-57574783 | Msa0172510:three_prime_UTR | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | + | chr1_4:57574877-57574896 | Msa0172510:three_prime_UTR | 25.0% |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | + | chr1_4:57574041-57574060 | Msa0172510:five_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | + | chr1_4:57574790-57574809 | Msa0172510:three_prime_UTR | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | + | chr1_4:57574791-57574810 | Msa0172510:three_prime_UTR | 30.0% | |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | + | chr1_4:57574041-57574060 | Msa0172510:five_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | + | chr1_4:57574790-57574809 | Msa0172510:three_prime_UTR | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | + | chr1_4:57574791-57574810 | Msa0172510:three_prime_UTR | 30.0% | |
| !! | ATTTGTTATTACCTCAGCGT+AGG | - | chr1_4:57574186-57574205 | None:intergenic | 35.0% |
| GTGAGTTTGAAAGAAAGAAC+TGG | + | chr1_4:57574314-57574333 | Msa0172510:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | + | chr1_4:57574361-57574380 | Msa0172510:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | - | chr1_4:57574403-57574422 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | + | chr1_4:57574415-57574434 | Msa0172510:CDS | 35.0% | |
| !! | ATTTGTTATTACCTCAGCGT+AGG | - | chr1_4:57574186-57574205 | None:intergenic | 35.0% |
| GTGAGTTTGAAAGAAAGAAC+TGG | + | chr1_4:57574314-57574333 | Msa0172510:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | + | chr1_4:57574361-57574380 | Msa0172510:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | - | chr1_4:57574403-57574422 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | + | chr1_4:57574415-57574434 | Msa0172510:CDS | 35.0% | |
| CATGGTTGAGACTTGAGAAT+CGG | - | chr1_4:57574087-57574106 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | - | chr1_4:57574346-57574365 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | - | chr1_4:57574395-57574414 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | + | chr1_4:57574463-57574482 | Msa0172510:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | - | chr1_4:57574743-57574762 | None:intergenic | 40.0% |
| CATGGTTGAGACTTGAGAAT+CGG | - | chr1_4:57574087-57574106 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | - | chr1_4:57574346-57574365 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | - | chr1_4:57574395-57574414 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | + | chr1_4:57574463-57574482 | Msa0172510:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | - | chr1_4:57574743-57574762 | None:intergenic | 40.0% |
| ! | TTTGCTGCAGCGGTTTTCTT+GGG | - | chr1_4:57574143-57574162 | None:intergenic | 45.0% |
| GTTATTACCTCAGCGTAGGT+AGG | - | chr1_4:57574182-57574201 | None:intergenic | 45.0% | |
| CTGAAGAAATCTGTGGCTTC+TGG | + | chr1_4:57574422-57574441 | Msa0172510:CDS | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | - | chr1_4:57574641-57574660 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | - | chr1_4:57574659-57574678 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | + | chr1_4:57574656-57574675 | Msa0172510:CDS | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | - | chr1_4:57574725-57574744 | None:intergenic | 45.0% | |
| ! | TTTGCTGCAGCGGTTTTCTT+GGG | - | chr1_4:57574143-57574162 | None:intergenic | 45.0% |
| GTTATTACCTCAGCGTAGGT+AGG | - | chr1_4:57574182-57574201 | None:intergenic | 45.0% | |
| CTGAAGAAATCTGTGGCTTC+TGG | + | chr1_4:57574422-57574441 | Msa0172510:CDS | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | - | chr1_4:57574641-57574660 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | - | chr1_4:57574659-57574678 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | + | chr1_4:57574656-57574675 | Msa0172510:CDS | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | - | chr1_4:57574725-57574744 | None:intergenic | 45.0% | |
| ! | CTTTGCTGCAGCGGTTTTCT+TGG | - | chr1_4:57574144-57574163 | None:intergenic | 50.0% |
| CTTCTTAGCAGGAGCAGTAG+CGG | - | chr1_4:57574516-57574535 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | + | chr1_4:57574520-57574539 | Msa0172510:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | - | chr1_4:57574527-57574546 | None:intergenic | 50.0% |
| TAAGGCTGCAACTAAGCCGA+AGG | + | chr1_4:57574562-57574581 | Msa0172510:CDS | 50.0% | |
| TTCACAGCAGCTTTCGCCTT+CGG | - | chr1_4:57574581-57574600 | None:intergenic | 50.0% | |
| !! | TTTGGCTTTGCGGCAGCTTT+CGG | - | chr1_4:57574605-57574624 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | + | chr1_4:57574655-57574674 | Msa0172510:CDS | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | - | chr1_4:57574686-57574705 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | + | chr1_4:57574685-57574704 | Msa0172510:CDS | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | + | chr1_4:57574721-57574740 | Msa0172510:CDS | 50.0% |
| ! | CTTTGCTGCAGCGGTTTTCT+TGG | - | chr1_4:57574144-57574163 | None:intergenic | 50.0% |
| CTTCTTAGCAGGAGCAGTAG+CGG | - | chr1_4:57574516-57574535 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | + | chr1_4:57574520-57574539 | Msa0172510:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | - | chr1_4:57574527-57574546 | None:intergenic | 50.0% |
| TAAGGCTGCAACTAAGCCGA+AGG | + | chr1_4:57574562-57574581 | Msa0172510:CDS | 50.0% | |
| TTCACAGCAGCTTTCGCCTT+CGG | - | chr1_4:57574581-57574600 | None:intergenic | 50.0% | |
| !! | TTTGGCTTTGCGGCAGCTTT+CGG | - | chr1_4:57574605-57574624 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | + | chr1_4:57574655-57574674 | Msa0172510:CDS | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | - | chr1_4:57574686-57574705 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | + | chr1_4:57574685-57574704 | Msa0172510:CDS | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | + | chr1_4:57574721-57574740 | Msa0172510:CDS | 50.0% |
| ! | GGTTTTCTTGGGCTTGGGCT+TGG | - | chr1_4:57574132-57574151 | None:intergenic | 55.0% |
| ! | GCAGCGGTTTTCTTGGGCTT+GGG | - | chr1_4:57574137-57574156 | None:intergenic | 55.0% |
| ! | TGCAGCGGTTTTCTTGGGCT+TGG | - | chr1_4:57574138-57574157 | None:intergenic | 55.0% |
| GAGAGGCTTCTTTGCTGCAG+CGG | - | chr1_4:57574153-57574172 | None:intergenic | 55.0% | |
| GCGTAGGTAGGATGAGAGAG+AGG | - | chr1_4:57574170-57574189 | None:intergenic | 55.0% | |
| CTCTCATCCTACCTACGCTG+AGG | + | chr1_4:57574172-57574191 | Msa0172510:CDS | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | + | chr1_4:57574469-57574488 | Msa0172510:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | + | chr1_4:57574514-57574533 | Msa0172510:CDS | 55.0% | |
| AAGGCTGTTACGAAGCCAGC+CGG | + | chr1_4:57574539-57574558 | Msa0172510:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGGTA+AGG | + | chr1_4:57574544-57574563 | Msa0172510:CDS | 55.0% | |
| TTAGTTGCAGCCTTACCGGC+TGG | - | chr1_4:57574557-57574576 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAC+CGG | - | chr1_4:57574561-57574580 | None:intergenic | 55.0% | |
| TGCCGCAAAGCCAAAAGCAG+CGG | + | chr1_4:57574610-57574629 | Msa0172510:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | - | chr1_4:57574623-57574642 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | + | chr1_4:57574676-57574695 | Msa0172510:CDS | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | + | chr1_4:57574688-57574707 | Msa0172510:CDS | 55.0% | |
| ! | GGTTTTCTTGGGCTTGGGCT+TGG | - | chr1_4:57574132-57574151 | None:intergenic | 55.0% |
| ! | GCAGCGGTTTTCTTGGGCTT+GGG | - | chr1_4:57574137-57574156 | None:intergenic | 55.0% |
| ! | TGCAGCGGTTTTCTTGGGCT+TGG | - | chr1_4:57574138-57574157 | None:intergenic | 55.0% |
| GAGAGGCTTCTTTGCTGCAG+CGG | - | chr1_4:57574153-57574172 | None:intergenic | 55.0% | |
| GCGTAGGTAGGATGAGAGAG+AGG | - | chr1_4:57574170-57574189 | None:intergenic | 55.0% | |
| CTCTCATCCTACCTACGCTG+AGG | + | chr1_4:57574172-57574191 | Msa0172510:CDS | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | + | chr1_4:57574469-57574488 | Msa0172510:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | + | chr1_4:57574514-57574533 | Msa0172510:CDS | 55.0% | |
| AAGGCTGTTACGAAGCCAGC+CGG | + | chr1_4:57574539-57574558 | Msa0172510:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGGTA+AGG | + | chr1_4:57574544-57574563 | Msa0172510:CDS | 55.0% | |
| TTAGTTGCAGCCTTACCGGC+TGG | - | chr1_4:57574557-57574576 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAC+CGG | - | chr1_4:57574561-57574580 | None:intergenic | 55.0% | |
| TGCCGCAAAGCCAAAAGCAG+CGG | + | chr1_4:57574610-57574629 | Msa0172510:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | - | chr1_4:57574623-57574642 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | + | chr1_4:57574676-57574695 | Msa0172510:CDS | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | + | chr1_4:57574688-57574707 | Msa0172510:CDS | 55.0% | |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | - | chr1_4:57574120-57574139 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | + | chr1_4:57574436-57574455 | Msa0172510:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | - | chr1_4:57574471-57574490 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | + | chr1_4:57574490-57574509 | Msa0172510:CDS | 60.0% | |
| !!! | CGCCGCTGCTTTTGGCTTTG+CGG | - | chr1_4:57574615-57574634 | None:intergenic | 60.0% |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | - | chr1_4:57574120-57574139 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | + | chr1_4:57574436-57574455 | Msa0172510:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | - | chr1_4:57574471-57574490 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | + | chr1_4:57574490-57574509 | Msa0172510:CDS | 60.0% | |
| !!! | CGCCGCTGCTTTTGGCTTTG+CGG | - | chr1_4:57574615-57574634 | None:intergenic | 60.0% |
| TTGGTCTGAGCAGCGGCGGT+GGG | - | chr1_4:57574113-57574132 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | - | chr1_4:57574485-57574504 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | + | chr1_4:57574484-57574503 | Msa0172510:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | - | chr1_4:57574506-57574525 | None:intergenic | 65.0% | |
| TTGGTCTGAGCAGCGGCGGT+GGG | - | chr1_4:57574113-57574132 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | - | chr1_4:57574485-57574504 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | + | chr1_4:57574484-57574503 | Msa0172510:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | - | chr1_4:57574506-57574525 | None:intergenic | 65.0% | |
| AGCAGCGGCGGTGGGAGACA+TGG | - | chr1_4:57574105-57574124 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | - | chr1_4:57574114-57574133 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | - | chr1_4:57574117-57574136 | None:intergenic | 70.0% |
| AGCAGCGGCGGTGGGAGACA+TGG | - | chr1_4:57574105-57574124 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | - | chr1_4:57574114-57574133 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | - | chr1_4:57574117-57574136 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57573999 | 57574964 | 57573999 | ID=Msa0172510;Name=Msa0172510 |
| chr1_4 | mRNA | 57573999 | 57574964 | 57573999 | ID=Msa0172510-mRNA-1;Parent=Msa0172510;Name=Msa0172510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=105|1|1|1|1|1|2|201|185 |
| chr1_4 | exon | 57573999 | 57574193 | 57573999 | ID=Msa0172510-mRNA-1:exon:17601;Parent=Msa0172510-mRNA-1 |
| chr1_4 | exon | 57574296 | 57574964 | 57574296 | ID=Msa0172510-mRNA-1:exon:17602;Parent=Msa0172510-mRNA-1 |
| chr1_4 | five_prime_UTR | 57573999 | 57574103 | 57573999 | ID=Msa0172510-mRNA-1:five_prime_utr;Parent=Msa0172510-mRNA-1 |
| chr1_4 | CDS | 57574104 | 57574193 | 57574104 | ID=Msa0172510-mRNA-1:cds;Parent=Msa0172510-mRNA-1 |
| chr1_4 | CDS | 57574296 | 57574763 | 57574296 | ID=Msa0172510-mRNA-1:cds;Parent=Msa0172510-mRNA-1 |
| chr1_4 | three_prime_UTR | 57574764 | 57574964 | 57574764 | ID=Msa0172510-mRNA-1:three_prime_utr;Parent=Msa0172510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
