Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500650 | XP_024633829.1 | 100.000 | 118 | 0 | 0 | 1 | 118 | 106 | 223 | 1.69e-83 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500650 | sp|Q1G3M3|Y3918_ARATH | 62.712 | 118 | 44 | 0 | 1 | 118 | 110 | 227 | 1.32e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500650 | A0A072V1N6 | 100.000 | 118 | 0 | 0 | 1 | 118 | 106 | 223 | 8.08e-84 | 253 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0500650 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0500650 | 0.829429 | 5.173510e-55 | -8.615850e-47 |
| Msa0025160 | Msa0500650 | 0.801497 | 8.758353e-49 | -8.615850e-47 |
| Msa0029380 | Msa0500650 | 0.822745 | 2.009674e-53 | -8.615850e-47 |
| Msa0038940 | Msa0500650 | 0.800582 | 1.347298e-48 | -8.615850e-47 |
| Msa0042640 | Msa0500650 | 0.801608 | 8.311273e-49 | -8.615850e-47 |
| Msa0048510 | Msa0500650 | 0.810163 | 1.321321e-50 | -8.615850e-47 |
| Msa0054690 | Msa0500650 | 0.809280 | 2.045552e-50 | -8.615850e-47 |
| Msa0065020 | Msa0500650 | 0.833812 | 4.301781e-56 | -8.615850e-47 |
| Msa0068150 | Msa0500650 | 0.800669 | 1.293120e-48 | -8.615850e-47 |
| Msa0077340 | Msa0500650 | 0.845726 | 3.393284e-59 | -8.615850e-47 |
| Msa0077560 | Msa0500650 | 0.883864 | 3.125580e-71 | -8.615850e-47 |
| Msa0081980 | Msa0500650 | 0.840328 | 9.291493e-58 | -8.615850e-47 |
| Msa0082020 | Msa0500650 | 0.841015 | 6.140184e-58 | -8.615850e-47 |
| Msa0094780 | Msa0500650 | 0.817722 | 2.845865e-52 | -8.615850e-47 |
| Msa0110200 | Msa0500650 | 0.808562 | 2.913580e-50 | -8.615850e-47 |
| Msa0122330 | Msa0500650 | 0.801633 | 8.211490e-49 | -8.615850e-47 |
| Msa0123070 | Msa0500650 | 0.835823 | 1.340774e-56 | -8.615850e-47 |
| Msa0124910 | Msa0500650 | 0.844176 | 8.888552e-59 | -8.615850e-47 |
| Msa0125360 | Msa0500650 | 0.831994 | 1.217640e-55 | -8.615850e-47 |
| Msa0128460 | Msa0500650 | 0.826392 | 2.782817e-54 | -8.615850e-47 |
| Msa0142430 | Msa0500650 | 0.827804 | 1.277965e-54 | -8.615850e-47 |
| Msa0169410 | Msa0500650 | 0.804697 | 1.907317e-49 | -8.615850e-47 |
| Msa0172480 | Msa0500650 | 0.811029 | 8.586098e-51 | -8.615850e-47 |
| Msa0174290 | Msa0500650 | 0.831305 | 1.799545e-55 | -8.615850e-47 |
| Msa0181650 | Msa0500650 | 0.811399 | 7.139780e-51 | -8.615850e-47 |
| Msa0183710 | Msa0500650 | 0.803101 | 4.093797e-49 | -8.615850e-47 |
| Msa0189900 | Msa0500650 | 0.801124 | 1.044006e-48 | -8.615850e-47 |
| Msa0190570 | Msa0500650 | 0.811530 | 6.686141e-51 | -8.615850e-47 |
| Msa0190730 | Msa0500650 | 0.840375 | 9.033982e-58 | -8.615850e-47 |
| Msa0194630 | Msa0500650 | 0.825540 | 4.433448e-54 | -8.615850e-47 |
| Msa0204950 | Msa0500650 | 0.825923 | 3.596667e-54 | -8.615850e-47 |
| Msa0213030 | Msa0500650 | 0.806210 | 9.186883e-50 | -8.615850e-47 |
| Msa0233020 | Msa0500650 | 0.804752 | 1.857979e-49 | -8.615850e-47 |
| Msa0236820 | Msa0500650 | 0.812252 | 4.655421e-51 | -8.615850e-47 |
| Msa0373500 | Msa0500650 | 0.831570 | 1.548850e-55 | -8.615850e-47 |
| Msa0377710 | Msa0500650 | 0.807432 | 5.068962e-50 | -8.615850e-47 |
| Msa0380490 | Msa0500650 | 0.864222 | 1.420362e-64 | -8.615850e-47 |
| Msa0409830 | Msa0500650 | 0.863560 | 2.280896e-64 | -8.615850e-47 |
| Msa0414880 | Msa0500650 | 0.805713 | 1.168753e-49 | -8.615850e-47 |
| Msa0422050 | Msa0500650 | 0.812928 | 3.312752e-51 | -8.615850e-47 |
| Msa0424160 | Msa0500650 | 0.809267 | 2.059349e-50 | -8.615850e-47 |
| Msa0430000 | Msa0500650 | 0.843865 | 1.076904e-58 | -8.615850e-47 |
| Msa0432010 | Msa0500650 | 0.843537 | 1.318655e-58 | -8.615850e-47 |
| Msa0436330 | Msa0500650 | 0.836413 | 9.498491e-57 | -8.615850e-47 |
| Msa0459740 | Msa0500650 | 0.816206 | 6.233113e-52 | -8.615850e-47 |
| Msa0466880 | Msa0500650 | 0.807719 | 4.404950e-50 | -8.615850e-47 |
| Msa0468620 | Msa0500650 | 0.815270 | 1.007512e-51 | -8.615850e-47 |
| Msa0468700 | Msa0500650 | 0.829570 | 4.781296e-55 | -8.615850e-47 |
| Msa0481890 | Msa0500650 | 0.860575 | 1.877466e-63 | -8.615850e-47 |
| Msa0241610 | Msa0500650 | 0.827126 | 1.857784e-54 | -8.615850e-47 |
| Msa0249850 | Msa0500650 | 0.807758 | 4.322213e-50 | -8.615850e-47 |
| Msa0269210 | Msa0500650 | 0.851662 | 7.668898e-61 | -8.615850e-47 |
| Msa0281470 | Msa0500650 | 0.848685 | 5.234881e-60 | -8.615850e-47 |
| Msa0298470 | Msa0500650 | 0.800663 | 1.296547e-48 | -8.615850e-47 |
| Msa0307270 | Msa0500650 | 0.847915 | 8.546965e-60 | -8.615850e-47 |
| Msa0320600 | Msa0500650 | 0.826240 | 3.023483e-54 | -8.615850e-47 |
| Msa0361910 | Msa0500650 | 0.857324 | 1.763650e-62 | -8.615850e-47 |
| Msa0500570 | Msa0500650 | 0.838793 | 2.328204e-57 | -8.615850e-47 |
| Msa0500650 | Msa0502510 | 0.808743 | 2.665890e-50 | -8.615850e-47 |
| Msa0500650 | Msa0514500 | 0.815943 | 7.134748e-52 | -8.615850e-47 |
| Msa0500650 | Msa0514580 | 0.831659 | 1.472563e-55 | -8.615850e-47 |
| Msa0500650 | Msa0519760 | 0.804766 | 1.845669e-49 | -8.615850e-47 |
| Msa0500650 | Msa0519840 | 0.800308 | 1.531677e-48 | -8.615850e-47 |
| Msa0500650 | Msa0520870 | 0.804899 | 1.730805e-49 | -8.615850e-47 |
| Msa0500650 | Msa0529030 | 0.831488 | 1.622320e-55 | -8.615850e-47 |
| Msa0500650 | Msa0531960 | 0.820587 | 6.338465e-53 | -8.615850e-47 |
| Msa0500650 | Msa0534720 | 0.804304 | 2.303502e-49 | -8.615850e-47 |
| Msa0500650 | Msa0567170 | 0.822903 | 1.846154e-53 | -8.615850e-47 |
| Msa0500650 | Msa0579160 | 0.808584 | 2.882308e-50 | -8.615850e-47 |
| Msa0500650 | Msa0579220 | 0.806298 | 8.804482e-50 | -8.615850e-47 |
| Msa0500650 | Msa0580370 | 0.837038 | 6.579780e-57 | -8.615850e-47 |
| Msa0500650 | Msa0580810 | 0.803196 | 3.912481e-49 | -8.615850e-47 |
| Msa0500650 | Msa0588920 | 0.804663 | 1.939175e-49 | -8.615850e-47 |
| Msa0500650 | Msa0607800 | 0.829304 | 5.548753e-55 | -8.615850e-47 |
| Msa0500650 | Msa0608700 | 0.803210 | 3.885498e-49 | -8.615850e-47 |
| Msa0500650 | Msa0621320 | 0.817807 | 2.723063e-52 | -8.615850e-47 |
| Msa0500650 | Msa0621710 | 0.824859 | 6.422627e-54 | -8.615850e-47 |
| Msa0500650 | Msa0624900 | 0.816940 | 4.266936e-52 | -8.615850e-47 |
| Msa0500650 | Msa0648040 | 0.815241 | 1.022558e-51 | -8.615850e-47 |
| Msa0500650 | Msa0652770 | 0.815286 | 9.992362e-52 | -8.615850e-47 |
| Msa0500650 | Msa0658640 | 0.830105 | 3.542549e-55 | -8.615850e-47 |
| Msa0500650 | Msa0666700 | 0.814886 | 1.225765e-51 | -8.615850e-47 |
| Msa0500650 | Msa0690740 | 0.809667 | 1.689305e-50 | -8.615850e-47 |
| Msa0500650 | Msa0693340 | -0.809121 | 2.212772e-50 | -8.615850e-47 |
| Msa0500650 | Msa0702810 | 0.820645 | 6.146537e-53 | -8.615850e-47 |
| Msa0500650 | Msa0703600 | 0.821827 | 3.282887e-53 | -8.615850e-47 |
| Msa0500650 | Msa0703950 | 0.822515 | 2.273204e-53 | -8.615850e-47 |
| Msa0500650 | Msa0709200 | 0.826544 | 2.559854e-54 | -8.615850e-47 |
| Msa0500650 | Msa0709440 | 0.861108 | 1.293606e-63 | -8.615850e-47 |
| Msa0500650 | Msa0716480 | 0.823575 | 1.286567e-53 | -8.615850e-47 |
| Msa0500650 | Msa0716890 | 0.801775 | 7.677962e-49 | -8.615850e-47 |
| Msa0500650 | Msa0730930 | 0.820387 | 7.047021e-53 | -8.615850e-47 |
| Msa0500650 | Msa0735780 | 0.836987 | 6.778994e-57 | -8.615850e-47 |
| Msa0500650 | Msa0740710 | 0.811759 | 5.962326e-51 | -8.615850e-47 |
| Msa0500650 | Msa0754430 | 0.809937 | 1.478271e-50 | -8.615850e-47 |
| Msa0500650 | Msa0754450 | 0.812749 | 3.625683e-51 | -8.615850e-47 |
| Msa0500650 | Msa0773630 | 0.803253 | 3.807695e-49 | -8.615850e-47 |
| Msa0500650 | Msa0777750 | 0.802064 | 6.696913e-49 | -8.615850e-47 |
| Msa0500650 | Msa0780910 | 0.846704 | 1.837737e-59 | -8.615850e-47 |
| Msa0500650 | Msa0795750 | 0.807545 | 4.797429e-50 | -8.615850e-47 |
| Msa0500650 | Msa0795870 | 0.834181 | 3.476685e-56 | -8.615850e-47 |
| Msa0500650 | Msa0815970 | 0.828377 | 9.302169e-55 | -8.615850e-47 |
| Msa0500650 | Msa0821160 | 0.835794 | 1.363894e-56 | -8.615850e-47 |
| Msa0500650 | Msa0824450 | 0.803926 | 2.760256e-49 | -8.615850e-47 |
| Msa0500650 | Msa0828970 | 0.821269 | 4.416765e-53 | -8.615850e-47 |
| Msa0500650 | Msa0833650 | 0.841145 | 5.674445e-58 | -8.615850e-47 |
| Msa0500650 | Msa0837460 | 0.821962 | 3.054614e-53 | -8.615850e-47 |
| Msa0500650 | Msa0850690 | 0.833479 | 5.209451e-56 | -8.615850e-47 |
| Msa0500650 | Msa0865420 | 0.808800 | 2.591511e-50 | -8.615850e-47 |
| Msa0500650 | Msa0878280 | 0.849589 | 2.934713e-60 | -8.615850e-47 |
| Msa0500650 | Msa0901120 | 0.805398 | 1.360867e-49 | -8.615850e-47 |
| Msa0500650 | Msa0944010 | 0.809317 | 2.008508e-50 | -8.615850e-47 |
| Msa0500650 | Msa0945190 | 0.811841 | 5.722124e-51 | -8.615850e-47 |
| Msa0500650 | Msa0980290 | 0.827850 | 1.245747e-54 | -8.615850e-47 |
| Msa0500650 | Msa1002350 | 0.810772 | 9.759703e-51 | -8.615850e-47 |
| Msa0500650 | Msa1002640 | 0.804270 | 2.341560e-49 | -8.615850e-47 |
| Msa0500650 | Msa1033920 | 0.800371 | 1.486951e-48 | -8.615850e-47 |
| Msa0500650 | Msa1034860 | 0.814272 | 1.676207e-51 | -8.615850e-47 |
| Msa0500650 | Msa1072940 | 0.848475 | 5.987591e-60 | -8.615850e-47 |
| Msa0500650 | Msa1074900 | 0.833851 | 4.206064e-56 | -8.615850e-47 |
| Msa0500650 | Msa1084530 | 0.858286 | 9.140769e-63 | -8.615850e-47 |
| Msa0500650 | Msa1125820 | 0.854179 | 1.462181e-61 | -8.615850e-47 |
| Msa0500650 | Msa1125990 | 0.858372 | 8.618312e-63 | -8.615850e-47 |
| Msa0500650 | Msa1132530 | 0.821875 | 3.198840e-53 | -8.615850e-47 |
| Msa0500650 | Msa1132840 | 0.835432 | 1.683699e-56 | -8.615850e-47 |
| Msa0500650 | Msa1160920 | 0.824796 | 6.645642e-54 | -8.615850e-47 |
| Msa0500650 | Msa1162230 | 0.830886 | 2.281115e-55 | -8.615850e-47 |
| Msa0500650 | Msa1171290 | 0.863818 | 1.897392e-64 | -8.615850e-47 |
| Msa0500650 | Msa1200890 | 0.809660 | 1.695145e-50 | -8.615850e-47 |
| Msa0500650 | Msa1218820 | 0.804224 | 2.393583e-49 | -8.615850e-47 |
| Msa0500650 | Msa1226520 | 0.823511 | 1.331563e-53 | -8.615850e-47 |
| Msa0500650 | Msa1254240 | 0.800804 | 1.213715e-48 | -8.615850e-47 |
| Msa0500650 | Msa1254540 | 0.813380 | 2.635181e-51 | -8.615850e-47 |
| Msa0500650 | Msa1262590 | 0.804313 | 2.294147e-49 | -8.615850e-47 |
| Msa0500650 | Msa1263780 | 0.801499 | 8.749721e-49 | -8.615850e-47 |
| Msa0500650 | Msa1306570 | 0.802527 | 5.379268e-49 | -8.615850e-47 |
| Msa0500650 | Msa1343180 | 0.817347 | 3.457525e-52 | -8.615850e-47 |
| Msa0500650 | Msa1349690 | 0.814452 | 1.529311e-51 | -8.615850e-47 |
| Msa0500650 | Msa1358290 | 0.813925 | 2.000129e-51 | -8.615850e-47 |
| Msa0500650 | Msa1359690 | 0.812381 | 4.363180e-51 | -8.615850e-47 |
| Msa0500650 | Msa1366150 | 0.825673 | 4.123431e-54 | -8.615850e-47 |
| Msa0500650 | Msa1368750 | 0.842370 | 2.695225e-58 | -8.615850e-47 |
| Msa0500650 | Msa1374790 | 0.841320 | 5.104656e-58 | -8.615850e-47 |
| Msa0500650 | Msa1384150 | 0.804299 | 2.309159e-49 | -8.615850e-47 |
| Msa0500650 | Msa1387440 | 0.849418 | 3.276336e-60 | -8.615850e-47 |
| Msa0500650 | Msa1391500 | 0.829102 | 6.211176e-55 | -8.615850e-47 |
| Msa0500650 | Msa1392740 | 0.810519 | 1.107386e-50 | -8.615850e-47 |
| Msa0500650 | Msa1398810 | 0.838425 | 2.898693e-57 | -8.615850e-47 |
| Msa0500650 | Msa1405460 | 0.834166 | 3.506528e-56 | -8.615850e-47 |
| Msa0500650 | Msa1407840 | 0.813023 | 3.156636e-51 | -8.615850e-47 |
| Msa0500650 | Msa1409410 | 0.826158 | 3.163280e-54 | -8.615850e-47 |
| Msa0500650 | Msa1412000 | 0.821223 | 4.525260e-53 | -8.615850e-47 |
| Msa0500650 | Msa1429070 | 0.810504 | 1.115457e-50 | -8.615850e-47 |
| Msa0500650 | Msa1437810 | 0.813069 | 3.084825e-51 | -8.615850e-47 |
| Msa0500650 | Msa1437930 | 0.803759 | 2.990290e-49 | -8.615850e-47 |
| Msa0500650 | Msa1440880 | 0.813819 | 2.110585e-51 | -8.615850e-47 |
| Msa0500650 | Msa1441960 | 0.833266 | 5.887469e-56 | -8.615850e-47 |
| Msa0500650 | Msa1447100 | 0.801757 | 7.743516e-49 | -8.615850e-47 |
| Msa0500650 | Msa1451820 | 0.842178 | 3.030280e-58 | -8.615850e-47 |
| Msa0500650 | Msa1454010 | 0.825613 | 4.261772e-54 | -8.615850e-47 |
| Msa0500650 | Msa1454500 | 0.802252 | 6.127750e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500650 | MtrunA17_Chr3g0133791 | 100.000 | 118 | 0 | 0 | 1 | 118 | 114 | 231 | 4.41e-87 | 252 |
| Msa0500650 | MtrunA17_Chr8g0375001 | 49.138 | 116 | 59 | 0 | 3 | 118 | 30 | 145 | 1.63e-38 | 127 |
| Msa0500650 | MtrunA17_Chr2g0332121 | 56.757 | 111 | 48 | 0 | 3 | 113 | 124 | 234 | 4.40e-37 | 129 |
| Msa0500650 | MtrunA17_Chr4g0002411 | 50.467 | 107 | 53 | 0 | 3 | 109 | 62 | 168 | 1.40e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500650 | AT3G19184.1 | 62.712 | 118 | 44 | 0 | 1 | 118 | 110 | 227 | 1.34e-51 | 164 |
| Msa0500650 | AT3G19184.2 | 62.712 | 118 | 44 | 0 | 1 | 118 | 110 | 227 | 1.50e-51 | 164 |
| Msa0500650 | AT5G42700.2 | 63.964 | 111 | 40 | 0 | 2 | 112 | 66 | 176 | 4.69e-49 | 155 |
| Msa0500650 | AT5G42700.1 | 64.545 | 110 | 39 | 0 | 2 | 111 | 111 | 220 | 1.07e-48 | 155 |
| Msa0500650 | AT5G58280.1 | 47.321 | 112 | 59 | 0 | 3 | 114 | 109 | 220 | 6.78e-29 | 105 |
| Msa0500650 | AT5G58280.2 | 47.321 | 112 | 59 | 0 | 3 | 114 | 142 | 253 | 1.41e-28 | 105 |
| Msa0500650 | AT5G58280.3 | 47.321 | 112 | 59 | 0 | 3 | 114 | 141 | 252 | 1.44e-28 | 105 |
Find 46 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGTCACTGGTGGATTC+TGG | 0.287144 | 3_4:+41182670 | Msa0500650:CDS |
| TGAGTCTCCAACTACATATT+TGG | 0.308296 | 3_4:+41185029 | Msa0500650:CDS |
| GTCATCACTTCGTCCCGTTT+TGG | 0.333776 | 3_4:-41184985 | None:intergenic |
| ATTGAATTGCAGTTGGAGAT+TGG | 0.371020 | 3_4:+41185650 | Msa0500650:exon |
| CACATGTAGGACCTCAAAAT+AGG | 0.390228 | 3_4:-41186487 | None:intergenic |
| AATATGCTGGTCTTGGCCCT+TGG | 0.397820 | 3_4:+41186402 | Msa0500650:three_prime_UTR |
| TAGAGTGAATGAGGGTAAAC+AGG | 0.402295 | 3_4:+41185624 | Msa0500650:CDS |
| ACATATTTGGCTCACAAAAC+AGG | 0.425458 | 3_4:+41185042 | Msa0500650:CDS |
| AGTTAAACGCACTGCATTCA+AGG | 0.432696 | 3_4:+41185137 | Msa0500650:CDS |
| TCTTGCAGGTTCTAATATGC+TGG | 0.436795 | 3_4:+41186389 | Msa0500650:intron |
| AGGTTCTAATATGCTGGTCT+TGG | 0.437551 | 3_4:+41186395 | Msa0500650:intron |
| ATTGCTCATAACCTTGTTGA+TGG | 0.442206 | 3_4:+41185093 | Msa0500650:CDS |
| AGCATTGACTTGACAAAAGT+TGG | 0.443741 | 3_4:-41182642 | None:intergenic |
| TGCGTCCGACGAAGCTAGAA+TGG | 0.446516 | 3_4:+41182569 | Msa0500650:exon |
| ATCCACCAGTGACATGAGAT+TGG | 0.459124 | 3_4:-41182665 | None:intergenic |
| GCCTTCCAAATCATTTCTGC+AGG | 0.472041 | 3_4:+41184953 | Msa0500650:CDS |
| TCTGCATATGTATAAATGAA+TGG | 0.477111 | 3_4:+41186521 | Msa0500650:three_prime_UTR |
| ATGACTTTAATTGATGAGGA+TGG | 0.480177 | 3_4:+41185003 | Msa0500650:CDS |
| GTGGTGGATATGATAAGTAC+AGG | 0.491955 | 3_4:+41182526 | None:intergenic |
| TGCTTCCATTCTAGCTTCGT+CGG | 0.496827 | 3_4:-41182574 | None:intergenic |
| GTACATTATTAGAGTGAATG+AGG | 0.501375 | 3_4:+41185615 | Msa0500650:CDS |
| TGGATGATCAGAATCTAAAT+CGG | 0.505469 | 3_4:-41182622 | None:intergenic |
| GAATTGCAGTTGGAGATTGG+AGG | 0.510474 | 3_4:+41185653 | Msa0500650:exon |
| CACAAAACAGGACTTAGTGC+TGG | 0.519162 | 3_4:+41185054 | Msa0500650:CDS |
| ATGCTCCAATCTCATGTCAC+TGG | 0.520101 | 3_4:+41182660 | Msa0500650:CDS |
| CTCCAATCTCATGTCACTGG+TGG | 0.526085 | 3_4:+41182663 | Msa0500650:CDS |
| TTTGAAAATCAGTGTTTGAG+TGG | 0.527073 | 3_4:+41186577 | Msa0500650:three_prime_UTR |
| CGAAGCTAGAATGGAAGCAA+TGG | 0.532880 | 3_4:+41182578 | Msa0500650:exon |
| TTGTGAGCCAAATATGTAGT+TGG | 0.534295 | 3_4:-41185036 | None:intergenic |
| TTGCTCATAACCTTGTTGAT+GGG | 0.536210 | 3_4:+41185094 | Msa0500650:CDS |
| GACTTTAATTGATGAGGATG+GGG | 0.536969 | 3_4:+41185005 | Msa0500650:CDS |
| TCCTGCAGAAATGATTTGGA+AGG | 0.537387 | 3_4:-41184954 | None:intergenic |
| TGACTTTAATTGATGAGGAT+GGG | 0.546142 | 3_4:+41185004 | Msa0500650:CDS |
| TGTCACTGGTGGATTCTGGC+TGG | 0.546764 | 3_4:+41182674 | Msa0500650:CDS |
| CAGGACGATTGAATTGCAGT+TGG | 0.556991 | 3_4:+41185643 | Msa0500650:exon |
| TGCTCATAACCTTGTTGATG+GGG | 0.557712 | 3_4:+41185095 | Msa0500650:CDS |
| GGACTTAGTGCTGGATGGAG+AGG | 0.579069 | 3_4:+41185063 | Msa0500650:CDS |
| GAAGAGTTAACTTCACATGT+AGG | 0.584500 | 3_4:-41186500 | None:intergenic |
| GTACAGGGATTATTCGAAGC+GGG | 0.591336 | 3_4:+41182542 | Msa0500650:five_prime_UTR |
| TACATTATTAGAGTGAATGA+GGG | 0.593532 | 3_4:+41185616 | Msa0500650:CDS |
| AAACAGGACTTAGTGCTGGA+TGG | 0.601864 | 3_4:+41185058 | Msa0500650:CDS |
| AGTGATGACTTTAATTGATG+AGG | 0.610611 | 3_4:+41184999 | Msa0500650:CDS |
| TAGAATGGAAGCAATGGAGA+AGG | 0.631866 | 3_4:+41182584 | Msa0500650:exon |
| TGGTGGATATGATAAGTACA+GGG | 0.664434 | 3_4:+41182527 | None:intergenic |
| TTAAAGCATCCCCATCAACA+AGG | 0.671282 | 3_4:-41185104 | None:intergenic |
| AGTACAGGGATTATTCGAAG+CGG | 0.715139 | 3_4:+41182541 | Msa0500650:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATCTTATTTTTATTAAA+GGG | - | chr3_4:41183214-41183233 | None:intergenic | 10.0% |
| !!! | AAGTATCTTATTTTTATTAA+AGG | - | chr3_4:41183215-41183234 | None:intergenic | 10.0% |
| !!! | TAATTTAATTTATTTGTACA+AGG | - | chr3_4:41184818-41184837 | None:intergenic | 10.0% |
| !! | TATAAAGATGTTAAAAAAAG+AGG | + | chr3_4:41182819-41182838 | Msa0500650:intron | 15.0% |
| !!! | GTATCTTATTTTTATTAAAG+GGG | - | chr3_4:41183213-41183232 | None:intergenic | 15.0% |
| !! | TTTCATAATATAAAATGAAG+TGG | + | chr3_4:41183468-41183487 | Msa0500650:intron | 15.0% |
| !! | TTGACAAATTTAAATCTATA+TGG | + | chr3_4:41184672-41184691 | Msa0500650:intron | 15.0% |
| !! | ACATAACATATATAATAGTT+GGG | - | chr3_4:41184709-41184728 | None:intergenic | 15.0% |
| !! | AACATAACATATATAATAGT+TGG | - | chr3_4:41184710-41184729 | None:intergenic | 15.0% |
| !! | TATTATATATGTTATGTTGA+GGG | + | chr3_4:41184712-41184731 | Msa0500650:intron | 15.0% |
| !! | ATACAACTACAATTTATAAT+TGG | + | chr3_4:41184900-41184919 | Msa0500650:intron | 15.0% |
| !!! | TTATAATTGGTTAATCATTT+TGG | + | chr3_4:41184913-41184932 | Msa0500650:intron | 15.0% |
| !! | TGATAACATGTATTATAAAT+AGG | - | chr3_4:41185346-41185365 | None:intergenic | 15.0% |
| !! | AAGAAAAATAAACAAATAAG+CGG | - | chr3_4:41186367-41186386 | None:intergenic | 15.0% |
| !!! | ATTAACATTCTCTCTTTTAA+TGG | - | chr3_4:41183250-41183269 | None:intergenic | 20.0% |
| !!! | GAAAATGTAATGAATTTTTC+TGG | - | chr3_4:41183307-41183326 | None:intergenic | 20.0% |
| !! | AAAAAACATACATTAGACAA+TGG | - | chr3_4:41183528-41183547 | None:intergenic | 20.0% |
| !! | GTAAATAATCTAATATAGGT+GGG | - | chr3_4:41183732-41183751 | None:intergenic | 20.0% |
| !! | AGTAAATAATCTAATATAGG+TGG | - | chr3_4:41183733-41183752 | None:intergenic | 20.0% |
| !! | GAGAGTAAATAATCTAATAT+AGG | - | chr3_4:41183736-41183755 | None:intergenic | 20.0% |
| !! | CTATTATATATGTTATGTTG+AGG | + | chr3_4:41184711-41184730 | Msa0500650:intron | 20.0% |
| !!! | TAAATAGGAGTATTGAAAAA+GGG | - | chr3_4:41185331-41185350 | None:intergenic | 20.0% |
| !!! | ATAAATAGGAGTATTGAAAA+AGG | - | chr3_4:41185332-41185351 | None:intergenic | 20.0% |
| !! | CCACATTGAAATAAATATAA+TGG | - | chr3_4:41185407-41185426 | None:intergenic | 20.0% |
| !! | CCATTATATTTATTTCAATG+TGG | + | chr3_4:41185404-41185423 | Msa0500650:intron | 20.0% |
| !! | TTATATTTATTTCAATGTGG+AGG | + | chr3_4:41185407-41185426 | Msa0500650:intron | 20.0% |
| !! | TATATTTATTTCAATGTGGA+GGG | + | chr3_4:41185408-41185427 | Msa0500650:intron | 20.0% |
| !! | AATACTACTGATATTTATCT+AGG | + | chr3_4:41185499-41185518 | Msa0500650:intron | 20.0% |
| !!! | TATTCATTGATTAACATATG+TGG | - | chr3_4:41185567-41185586 | None:intergenic | 20.0% |
| !!! | TTATAATTTTGTTATGAGCA+CGG | - | chr3_4:41185708-41185727 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAACAACATTCCA+TGG | - | chr3_4:41185863-41185882 | None:intergenic | 20.0% |
| !! | TTCCAAGATGAAAAATTAAA+GGG | + | chr3_4:41185884-41185903 | Msa0500650:intron | 20.0% |
| !! | ATTGTACTTCAAAAACTATA+CGG | - | chr3_4:41185991-41186010 | None:intergenic | 20.0% |
| !! | AATTTAATTCTCGTTTCTTA+TGG | + | chr3_4:41186283-41186302 | Msa0500650:intron | 20.0% |
| !! | ATTTAATTCTCGTTTCTTAT+GGG | + | chr3_4:41186284-41186303 | Msa0500650:intron | 20.0% |
| !! | ATAAGAGTGAAACATTTATT+TGG | + | chr3_4:41186323-41186342 | Msa0500650:intron | 20.0% |
| !!! | AGTTCACTTTTTTATTACTG+TGG | + | chr3_4:41182765-41182784 | Msa0500650:intron | 25.0% |
| !! | CATTTTGTATGTATAAATGC+TGG | + | chr3_4:41182874-41182893 | Msa0500650:intron | 25.0% |
| !!! | ATAAATGCTGGTTTTGTTAT+TGG | + | chr3_4:41182886-41182905 | Msa0500650:intron | 25.0% |
| !! | AATGTAATGAATTTTTCTGG+TGG | - | chr3_4:41183304-41183323 | None:intergenic | 25.0% |
| ! | TGAAGAAAGAAAATTGACAT+TGG | - | chr3_4:41183393-41183412 | None:intergenic | 25.0% |
| ! | TTGTCTATTGTATGTTAGTA+TGG | + | chr3_4:41183559-41183578 | Msa0500650:intron | 25.0% |
| ! | TGTCTATTGTATGTTAGTAT+GGG | + | chr3_4:41183560-41183579 | Msa0500650:intron | 25.0% |
| !! | GTTCAACAAAATCTTGTTTA+AGG | + | chr3_4:41183632-41183651 | Msa0500650:intron | 25.0% |
| !!! | ATTTGTTTTGGCTTTAAATG+AGG | - | chr3_4:41183878-41183897 | None:intergenic | 25.0% |
| ! | AAGAGATACAAAATTTGAGT+TGG | - | chr3_4:41184433-41184452 | None:intergenic | 25.0% |
| ! | CTTTATAAACGAAAACACAT+AGG | - | chr3_4:41184575-41184594 | None:intergenic | 25.0% |
| ! | CGAATAAAATTATGTCATTC+TGG | + | chr3_4:41184752-41184771 | Msa0500650:intron | 25.0% |
| ! | GAATATAGCACGATTAAATA+TGG | - | chr3_4:41185215-41185234 | None:intergenic | 25.0% |
| ! | ATAATGAGATTGCTAACTAT+AGG | - | chr3_4:41185543-41185562 | None:intergenic | 25.0% |
| ! | ATGTTAATCAATGAATAGTG+TGG | + | chr3_4:41185570-41185589 | Msa0500650:intron | 25.0% |
| ! | TACATTATTAGAGTGAATGA+GGG | + | chr3_4:41185616-41185635 | Msa0500650:CDS | 25.0% |
| ! | CTTCCAAGATGAAAAATTAA+AGG | + | chr3_4:41185883-41185902 | Msa0500650:intron | 25.0% |
| !!! | TTCCCTTTAATTTTTCATCT+TGG | - | chr3_4:41185889-41185908 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGTTAAGAGTGTC+CGG | - | chr3_4:41185927-41185946 | None:intergenic | 25.0% |
| ! | TTGTACTTCAAAAACTATAC+GGG | - | chr3_4:41185990-41186009 | None:intergenic | 25.0% |
| ! | ACATAATTTCATAGGAAAGT+TGG | - | chr3_4:41186105-41186124 | None:intergenic | 25.0% |
| ! | GAGACATAACATAATTTCAT+AGG | - | chr3_4:41186113-41186132 | None:intergenic | 25.0% |
| ! | GAAATTATGTTATGTCTCTA+TGG | + | chr3_4:41186115-41186134 | Msa0500650:intron | 25.0% |
| !!! | TTTATTTTTCTTGTTCTTGC+AGG | + | chr3_4:41186375-41186394 | Msa0500650:intron | 25.0% |
| ! | TCTGCATATGTATAAATGAA+TGG | + | chr3_4:41186521-41186540 | Msa0500650:three_prime_UTR | 25.0% |
| TGGATGATCAGAATCTAAAT+CGG | - | chr3_4:41182625-41182644 | None:intergenic | 30.0% | |
| !!! | GGTTTTGTTATTGGTTTCAA+TGG | + | chr3_4:41182895-41182914 | Msa0500650:intron | 30.0% |
| AGGTACTTGAAAAAGAGTAA+CGG | - | chr3_4:41183006-41183025 | None:intergenic | 30.0% | |
| GCATTCAAAGCAATAACTAA+AGG | - | chr3_4:41183026-41183045 | None:intergenic | 30.0% | |
| !! | TTGCTTTGAATGCTTTTCAA+TGG | + | chr3_4:41183033-41183052 | Msa0500650:intron | 30.0% |
| ATGCTTCCATTGAGTAAAAA+GGG | - | chr3_4:41183081-41183100 | None:intergenic | 30.0% | |
| AATGCTTCCATTGAGTAAAA+AGG | - | chr3_4:41183082-41183101 | None:intergenic | 30.0% | |
| !! | AATGAATTTTTCTGGTGGAA+GGG | - | chr3_4:41183299-41183318 | None:intergenic | 30.0% |
| !! | TAATGAATTTTTCTGGTGGA+AGG | - | chr3_4:41183300-41183319 | None:intergenic | 30.0% |
| AAAACCTATACTACTCTCTA+TGG | + | chr3_4:41183342-41183361 | Msa0500650:intron | 30.0% | |
| AACATTCGTTGTAACTACTT+TGG | + | chr3_4:41183491-41183510 | Msa0500650:intron | 30.0% | |
| ACATTCGTTGTAACTACTTT+GGG | + | chr3_4:41183492-41183511 | Msa0500650:intron | 30.0% | |
| ! | TTGTAACTACTTTGGGAATT+TGG | + | chr3_4:41183499-41183518 | Msa0500650:intron | 30.0% |
| AAGCCAAAACAAATCTTTGT+AGG | + | chr3_4:41183884-41183903 | Msa0500650:intron | 30.0% | |
| !! | GTTCCTACAAAGATTTGTTT+TGG | - | chr3_4:41183890-41183909 | None:intergenic | 30.0% |
| CATTTCCATGGACTTAAAAT+AGG | - | chr3_4:41184286-41184305 | None:intergenic | 30.0% | |
| ! | AGAGATTAGTTACTGCTAAA+GGG | + | chr3_4:41184776-41184795 | Msa0500650:intron | 30.0% |
| AATTTATTTGTACAAGGCTC+TGG | - | chr3_4:41184812-41184831 | None:intergenic | 30.0% | |
| GCTAGTTGTATTGAATTGAA+AGG | - | chr3_4:41184843-41184862 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGCAGAAATGATT+TGG | - | chr3_4:41184961-41184980 | None:intergenic | 30.0% |
| AGTGATGACTTTAATTGATG+AGG | + | chr3_4:41184999-41185018 | Msa0500650:CDS | 30.0% | |
| ATGACTTTAATTGATGAGGA+TGG | + | chr3_4:41185003-41185022 | Msa0500650:CDS | 30.0% | |
| TGACTTTAATTGATGAGGAT+GGG | + | chr3_4:41185004-41185023 | Msa0500650:CDS | 30.0% | |
| TTTAATCGTGCTATATTCCT+TGG | + | chr3_4:41185217-41185236 | Msa0500650:intron | 30.0% | |
| ! | GAATGTTCTTTTGAATACCA+AGG | - | chr3_4:41185237-41185256 | None:intergenic | 30.0% |
| AGATGAATGTTATATGCATG+TGG | + | chr3_4:41185284-41185303 | Msa0500650:intron | 30.0% | |
| TATATGCATGTGGCTAATAA+TGG | + | chr3_4:41185294-41185313 | Msa0500650:intron | 30.0% | |
| ! | GGTTGCTAAAATTTTCTTTC+AGG | + | chr3_4:41185591-41185610 | Msa0500650:intron | 30.0% |
| GTACATTATTAGAGTGAATG+AGG | + | chr3_4:41185615-41185634 | Msa0500650:CDS | 30.0% | |
| GGAGGTAGTAAAATTATTCT+AGG | + | chr3_4:41185671-41185690 | Msa0500650:intron | 30.0% | |
| !!! | TTTTTAAGTTAAGAGTGTCC+GGG | - | chr3_4:41185926-41185945 | None:intergenic | 30.0% |
| GGACACTCTTAACTTAAAAA+AGG | + | chr3_4:41185926-41185945 | Msa0500650:intron | 30.0% | |
| GAACAAAGAAGATGACAAAA+TGG | - | chr3_4:41186216-41186235 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTGGTGTTGTAGTT+TGG | + | chr3_4:41186429-41186448 | Msa0500650:three_prime_UTR | 30.0% |
| TTTGAAAATCAGTGTTTGAG+TGG | + | chr3_4:41186577-41186596 | Msa0500650:three_prime_UTR | 30.0% | |
| !! | AGCATTGACTTGACAAAAGT+TGG | - | chr3_4:41182645-41182664 | None:intergenic | 35.0% |
| ! | TTGGTTTCAATGGTTTTCCA+TGG | + | chr3_4:41182905-41182924 | Msa0500650:intron | 35.0% |
| AATAAACAGAGTTCAAGCCA+TGG | - | chr3_4:41182925-41182944 | None:intergenic | 35.0% | |
| ! | GCTTATGCACTTTTACTGAA+TGG | + | chr3_4:41182952-41182971 | Msa0500650:intron | 35.0% |
| ! | CTTTTCAATGGAAGTTGTTG+AGG | + | chr3_4:41183045-41183064 | Msa0500650:intron | 35.0% |
| ! | TTATGCCCCTTTTTACTCAA+TGG | + | chr3_4:41183072-41183091 | Msa0500650:intron | 35.0% |
| TGCTTCCATTGAGTAAAAAG+GGG | - | chr3_4:41183080-41183099 | None:intergenic | 35.0% | |
| TTCAAGTCCCCTTTATTCAA+TGG | + | chr3_4:41183138-41183157 | Msa0500650:intron | 35.0% | |
| TCAAGTCCCCTTTATTCAAT+GGG | + | chr3_4:41183139-41183158 | Msa0500650:intron | 35.0% | |
| AATGCTCCCATTGAATAAAG+GGG | - | chr3_4:41183148-41183167 | None:intergenic | 35.0% | |
| GAATGCTCCCATTGAATAAA+GGG | - | chr3_4:41183149-41183168 | None:intergenic | 35.0% | |
| AGAATGCTCCCATTGAATAA+AGG | - | chr3_4:41183150-41183169 | None:intergenic | 35.0% | |
| !! | ATGAATTTTTCTGGTGGAAG+GGG | - | chr3_4:41183298-41183317 | None:intergenic | 35.0% |
| AAAGTTAGTAGTCACTAGTC+AGG | - | chr3_4:41183429-41183448 | None:intergenic | 35.0% | |
| ! | ATCTAATATAGGTGGGTTTC+TGG | - | chr3_4:41183725-41183744 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTGTGTGTGTGT+TGG | + | chr3_4:41183785-41183804 | Msa0500650:intron | 35.0% |
| ACTTAAGTCTATAGCTCACA+TGG | + | chr3_4:41184189-41184208 | Msa0500650:intron | 35.0% | |
| AGATAGAAAACACACCACAA+AGG | + | chr3_4:41184220-41184239 | Msa0500650:intron | 35.0% | |
| ! | TGATTACTTGGGTTAGACTA+GGG | - | chr3_4:41184507-41184526 | None:intergenic | 35.0% |
| ! | CAGAGATTAGTTACTGCTAA+AGG | + | chr3_4:41184775-41184794 | Msa0500650:intron | 35.0% |
| GACTTTAATTGATGAGGATG+GGG | + | chr3_4:41185005-41185024 | Msa0500650:CDS | 35.0% | |
| TGAGTCTCCAACTACATATT+TGG | + | chr3_4:41185029-41185048 | Msa0500650:CDS | 35.0% | |
| TTGTGAGCCAAATATGTAGT+TGG | - | chr3_4:41185039-41185058 | None:intergenic | 35.0% | |
| ! | ACATATTTGGCTCACAAAAC+AGG | + | chr3_4:41185042-41185061 | Msa0500650:CDS | 35.0% |
| ATTGCTCATAACCTTGTTGA+TGG | + | chr3_4:41185093-41185112 | Msa0500650:CDS | 35.0% | |
| TTGCTCATAACCTTGTTGAT+GGG | + | chr3_4:41185094-41185113 | Msa0500650:CDS | 35.0% | |
| TTGTTTGTTCATTCATGCCT+TGG | + | chr3_4:41185174-41185193 | Msa0500650:intron | 35.0% | |
| ATTGAATTGCAGTTGGAGAT+TGG | + | chr3_4:41185650-41185669 | Msa0500650:exon | 35.0% | |
| !!! | TTTTAAGTTAAGAGTGTCCG+GGG | - | chr3_4:41185925-41185944 | None:intergenic | 35.0% |
| ATCATCACCATTGAGTTTCT+TGG | + | chr3_4:41186030-41186049 | Msa0500650:intron | 35.0% | |
| ! | TGTAGTCTTTAAGAGACATG+TGG | + | chr3_4:41186165-41186184 | Msa0500650:intron | 35.0% |
| ! | GTAGTCTTTAAGAGACATGT+GGG | + | chr3_4:41186166-41186185 | Msa0500650:intron | 35.0% |
| !!! | TGAAACGTGGCTTTATGTTT+TGG | + | chr3_4:41186256-41186275 | Msa0500650:intron | 35.0% |
| CACCAAAAAACTGAATCCAA+GGG | - | chr3_4:41186421-41186440 | None:intergenic | 35.0% | |
| ACACCAAAAAACTGAATCCA+AGG | - | chr3_4:41186422-41186441 | None:intergenic | 35.0% | |
| ! | TTCTTCTGTCTCCTATTTTG+AGG | + | chr3_4:41186476-41186495 | Msa0500650:three_prime_UTR | 35.0% |
| GAAGAGTTAACTTCACATGT+AGG | - | chr3_4:41186503-41186522 | None:intergenic | 35.0% | |
| AGTACAGGGATTATTCGAAG+CGG | + | chr3_4:41182541-41182560 | Msa0500650:five_prime_UTR | 40.0% | |
| TAGAATGGAAGCAATGGAGA+AGG | + | chr3_4:41182584-41182603 | Msa0500650:exon | 40.0% | |
| AGGGGCTTGAAAGATTGTAA+CGG | - | chr3_4:41183195-41183214 | None:intergenic | 40.0% | |
| CAATCTCACCGTTCATTTGT+GGG | + | chr3_4:41183850-41183869 | Msa0500650:intron | 40.0% | |
| AATCTCACCGTTCATTTGTG+GGG | + | chr3_4:41183851-41183870 | Msa0500650:intron | 40.0% | |
| AGGAACTAACCCACCAAAAT+TGG | + | chr3_4:41183904-41183923 | Msa0500650:intron | 40.0% | |
| TAACCCACCAAAATTGGCAT+TGG | + | chr3_4:41183910-41183929 | Msa0500650:intron | 40.0% | |
| ! | ATTCCCTCCAATGCCAATTT+TGG | - | chr3_4:41183920-41183939 | None:intergenic | 40.0% |
| ! | TGCTGTTAGCTTGAAACCTT+GGG | - | chr3_4:41183971-41183990 | None:intergenic | 40.0% |
| GTCACAATTACAACTTGGGT+TGG | - | chr3_4:41183999-41184018 | None:intergenic | 40.0% | |
| ACCCAAGTTGTAATTGTGAC+TGG | + | chr3_4:41183999-41184018 | Msa0500650:intron | 40.0% | |
| GCCAGTCACAATTACAACTT+GGG | - | chr3_4:41184003-41184022 | None:intergenic | 40.0% | |
| TGCCAGTCACAATTACAACT+TGG | - | chr3_4:41184004-41184023 | None:intergenic | 40.0% | |
| TGCATTCTTTGCTTCCTTTG+TGG | - | chr3_4:41184237-41184256 | None:intergenic | 40.0% | |
| !! | TCGCACCTATTTTAAGTCCA+TGG | + | chr3_4:41184278-41184297 | Msa0500650:intron | 40.0% |
| AGATAGAACACACACCAGAA+AGG | + | chr3_4:41184344-41184363 | Msa0500650:intron | 40.0% | |
| TGCATTCTTTGCTTCCTTTC+TGG | - | chr3_4:41184361-41184380 | None:intergenic | 40.0% | |
| ! | AGTGTGTTACTGTTGAGTGA+GGG | - | chr3_4:41184470-41184489 | None:intergenic | 40.0% |
| ! | GTGATTACTTGGGTTAGACT+AGG | - | chr3_4:41184508-41184527 | None:intergenic | 40.0% |
| GTGTGTGTGTGTGATTACTT+GGG | - | chr3_4:41184518-41184537 | None:intergenic | 40.0% | |
| TGTGTGTGTGTGTGATTACT+TGG | - | chr3_4:41184519-41184538 | None:intergenic | 40.0% | |
| AACACATAGGTGTACATCAG+AGG | - | chr3_4:41184562-41184581 | None:intergenic | 40.0% | |
| ! | TCCTGCAGAAATGATTTGGA+AGG | - | chr3_4:41184957-41184976 | None:intergenic | 40.0% |
| GCAGGAAAAACCTTCCAAAA+CGG | + | chr3_4:41184971-41184990 | Msa0500650:CDS | 40.0% | |
| CAGGAAAAACCTTCCAAAAC+GGG | + | chr3_4:41184972-41184991 | Msa0500650:CDS | 40.0% | |
| TGCTCATAACCTTGTTGATG+GGG | + | chr3_4:41185095-41185114 | Msa0500650:CDS | 40.0% | |
| ! | TTAAAGCATCCCCATCAACA+AGG | - | chr3_4:41185107-41185126 | None:intergenic | 40.0% |
| AGTTAAACGCACTGCATTCA+AGG | + | chr3_4:41185137-41185156 | Msa0500650:CDS | 40.0% | |
| GGTAGATGTGTTAAACACCA+AGG | - | chr3_4:41185194-41185213 | None:intergenic | 40.0% | |
| TAGAGTGAATGAGGGTAAAC+AGG | + | chr3_4:41185624-41185643 | Msa0500650:CDS | 40.0% | |
| ATACTCCGAGCATATAACAG+GGG | - | chr3_4:41185765-41185784 | None:intergenic | 40.0% | |
| CATACTCCGAGCATATAACA+GGG | - | chr3_4:41185766-41185785 | None:intergenic | 40.0% | |
| ATGGTCACATGGTAAGAACT+TGG | + | chr3_4:41185783-41185802 | Msa0500650:intron | 40.0% | |
| TGGTCACATGGTAAGAACTT+GGG | + | chr3_4:41185784-41185803 | Msa0500650:intron | 40.0% | |
| ! | GGTAAGAACTTGGGTCATTT+TGG | + | chr3_4:41185793-41185812 | Msa0500650:intron | 40.0% |
| ! | GACTATAGTGTTGTTAGTCC+TGG | + | chr3_4:41185828-41185847 | Msa0500650:intron | 40.0% |
| AAGGACACATGTATCTGTCT+AGG | + | chr3_4:41185945-41185964 | Msa0500650:intron | 40.0% | |
| AGGACACATGTATCTGTCTA+GGG | + | chr3_4:41185946-41185965 | Msa0500650:intron | 40.0% | |
| CAAGCAACCAAGAAACTCAA+TGG | - | chr3_4:41186040-41186059 | None:intergenic | 40.0% | |
| CATTGAGTTTCTTGGTTGCT+TGG | + | chr3_4:41186038-41186057 | Msa0500650:intron | 40.0% | |
| ! | AGACATGTGGGTATTGTTTG+TGG | + | chr3_4:41186178-41186197 | Msa0500650:intron | 40.0% |
| ! | GACATGTGGGTATTGTTTGT+GGG | + | chr3_4:41186179-41186198 | Msa0500650:intron | 40.0% |
| ! | ACATGTGGGTATTGTTTGTG+GGG | + | chr3_4:41186180-41186199 | Msa0500650:intron | 40.0% |
| TGTCTTGAAGTTGTGAAACG+TGG | + | chr3_4:41186243-41186262 | Msa0500650:intron | 40.0% | |
| GTTTCACTCTTATGCTACTC+TGG | - | chr3_4:41186316-41186335 | None:intergenic | 40.0% | |
| ! | TCTTGCAGGTTCTAATATGC+TGG | + | chr3_4:41186389-41186408 | Msa0500650:intron | 40.0% |
| ! | AGGTTCTAATATGCTGGTCT+TGG | + | chr3_4:41186395-41186414 | Msa0500650:intron | 40.0% |
| CACATGTAGGACCTCAAAAT+AGG | - | chr3_4:41186490-41186509 | None:intergenic | 40.0% | |
| GTACAGGGATTATTCGAAGC+GGG | + | chr3_4:41182542-41182561 | Msa0500650:five_prime_UTR | 45.0% | |
| !! | TGCTTCCATTCTAGCTTCGT+CGG | - | chr3_4:41182577-41182596 | None:intergenic | 45.0% |
| CGAAGCTAGAATGGAAGCAA+TGG | + | chr3_4:41182578-41182597 | Msa0500650:exon | 45.0% | |
| ATGCTCCAATCTCATGTCAC+TGG | + | chr3_4:41182660-41182679 | Msa0500650:CDS | 45.0% | |
| ATCCACCAGTGACATGAGAT+TGG | - | chr3_4:41182668-41182687 | None:intergenic | 45.0% | |
| GGGGACTTGAAAGATTGTAG+CGG | - | chr3_4:41183129-41183148 | None:intergenic | 45.0% | |
| CGCTCCATAGAGAGTAGTAT+AGG | - | chr3_4:41183349-41183368 | None:intergenic | 45.0% | |
| ACGCACAGTTGCTTGCTTAT+CGG | + | chr3_4:41183681-41183700 | Msa0500650:intron | 45.0% | |
| GTGTGTGTGTGTTGGAAACT+CGG | + | chr3_4:41183793-41183812 | Msa0500650:intron | 45.0% | |
| TGTGTTGGAAACTCGGTATC+TGG | + | chr3_4:41183800-41183819 | Msa0500650:intron | 45.0% | |
| ATTGGACCCCTCGAATTAGT+CGG | - | chr3_4:41183834-41183853 | None:intergenic | 45.0% | |
| CCACAAATGAACGGTGAGAT+TGG | - | chr3_4:41183852-41183871 | None:intergenic | 45.0% | |
| CCAATCTCACCGTTCATTTG+TGG | + | chr3_4:41183849-41183868 | Msa0500650:intron | 45.0% | |
| ATCTCACCGTTCATTTGTGG+GGG | + | chr3_4:41183852-41183871 | Msa0500650:intron | 45.0% | |
| !! | CCTCCAATGCCAATTTTGGT+GGG | - | chr3_4:41183916-41183935 | None:intergenic | 45.0% |
| ! | CCACCAAAATTGGCATTGGA+GGG | + | chr3_4:41183914-41183933 | Msa0500650:intron | 45.0% |
| ATGAAAACCGAGACCTTGAG+AGG | + | chr3_4:41183938-41183957 | Msa0500650:intron | 45.0% | |
| ! | GCTGTTAGCTTGAAACCTTG+GGG | - | chr3_4:41183970-41183989 | None:intergenic | 45.0% |
| ! | GTGCTGTTAGCTTGAAACCT+TGG | - | chr3_4:41183972-41183991 | None:intergenic | 45.0% |
| !! | AATTACAACTTGGGTTGGCC+TGG | - | chr3_4:41183994-41184013 | None:intergenic | 45.0% |
| !! | CACAAGGAAGAGCATTTCCA+TGG | - | chr3_4:41184298-41184317 | None:intergenic | 45.0% |
| GTGTGAGCTATCAACTCACA+AGG | - | chr3_4:41184314-41184333 | None:intergenic | 45.0% | |
| ! | GAGTGTGTTACTGTTGAGTG+AGG | - | chr3_4:41184471-41184490 | None:intergenic | 45.0% |
| ! | TTTTGGCATGCCTCAACAAC+AGG | + | chr3_4:41184930-41184949 | Msa0500650:intron | 45.0% |
| TTTGGCATGCCTCAACAACA+GGG | + | chr3_4:41184931-41184950 | Msa0500650:intron | 45.0% | |
| GCCTTCCAAATCATTTCTGC+AGG | + | chr3_4:41184953-41184972 | Msa0500650:CDS | 45.0% | |
| CACAAAACAGGACTTAGTGC+TGG | + | chr3_4:41185054-41185073 | Msa0500650:CDS | 45.0% | |
| ! | AAACAGGACTTAGTGCTGGA+TGG | + | chr3_4:41185058-41185077 | Msa0500650:CDS | 45.0% |
| TTAGAACAGCACACAGCACA+TGG | - | chr3_4:41185378-41185397 | None:intergenic | 45.0% | |
| CAGGACGATTGAATTGCAGT+TGG | + | chr3_4:41185643-41185662 | Msa0500650:exon | 45.0% | |
| GAATTGCAGTTGGAGATTGG+AGG | + | chr3_4:41185653-41185672 | Msa0500650:exon | 45.0% | |
| CTTTCCCCCTGTTATATGCT+CGG | + | chr3_4:41185757-41185776 | Msa0500650:intron | 45.0% | |
| TACTCCGAGCATATAACAGG+GGG | - | chr3_4:41185764-41185783 | None:intergenic | 45.0% | |
| CCATACTCCGAGCATATAAC+AGG | - | chr3_4:41185767-41185786 | None:intergenic | 45.0% | |
| CCTGTTATATGCTCGGAGTA+TGG | + | chr3_4:41185764-41185783 | Msa0500650:intron | 45.0% | |
| ! | GTGTTGTTAGTCCTGGAAAG+TGG | + | chr3_4:41185835-41185854 | Msa0500650:intron | 45.0% |
| ! | ATCTGTCTAGGGCCAAAGAA+AGG | + | chr3_4:41185957-41185976 | Msa0500650:intron | 45.0% |
| !! | ACGGGTTACTAGCCTTTCTT+TGG | - | chr3_4:41185972-41185991 | None:intergenic | 45.0% |
| TGGTTGCTTGGCTTAGTGTT+AGG | + | chr3_4:41186050-41186069 | Msa0500650:intron | 45.0% | |
| GCTTGGCTTAGTGTTAGGTT+AGG | + | chr3_4:41186055-41186074 | Msa0500650:intron | 45.0% | |
| GTTAGGTTAGGCACACAAGT+AGG | + | chr3_4:41186067-41186086 | Msa0500650:intron | 45.0% | |
| !!! | GGCCCTTGGATTCAGTTTTT+TGG | + | chr3_4:41186416-41186435 | Msa0500650:three_prime_UTR | 45.0% |
| !!! | AATAAATTTTTAAGATTATA+AGG | - | chr3_4:41186553-41186572 | None:intergenic | 5.0% |
| CTCCAATCTCATGTCACTGG+TGG | + | chr3_4:41182663-41182682 | Msa0500650:CDS | 50.0% | |
| !! | CTCATGTCACTGGTGGATTC+TGG | + | chr3_4:41182670-41182689 | Msa0500650:CDS | 50.0% |
| !! | TTTTCTGGTGGAAGGGGAGA+GGG | - | chr3_4:41183292-41183311 | None:intergenic | 50.0% |
| !! | TTTTTCTGGTGGAAGGGGAG+AGG | - | chr3_4:41183293-41183312 | None:intergenic | 50.0% |
| CCTCGAATTAGTCGGTCCTT+GGG | - | chr3_4:41183826-41183845 | None:intergenic | 50.0% | |
| CCAAGGACCGACTAATTCGA+GGG | + | chr3_4:41183824-41183843 | Msa0500650:intron | 50.0% | |
| CAAGGACCGACTAATTCGAG+GGG | + | chr3_4:41183825-41183844 | Msa0500650:intron | 50.0% | |
| ATGAGGCCCCCACAAATGAA+CGG | - | chr3_4:41183861-41183880 | None:intergenic | 50.0% | |
| ! | CCCACCAAAATTGGCATTGG+AGG | + | chr3_4:41183913-41183932 | Msa0500650:intron | 50.0% |
| ! | CCCTCCAATGCCAATTTTGG+TGG | - | chr3_4:41183917-41183936 | None:intergenic | 50.0% |
| GGTTTCAAGCTAACAGCACC+AGG | + | chr3_4:41183973-41183992 | Msa0500650:intron | 50.0% | |
| TTTGGAAGGCCCTGTTGTTG+AGG | - | chr3_4:41184943-41184962 | None:intergenic | 50.0% | |
| !! | TCACTTCGTCCCGTTTTGGA+AGG | - | chr3_4:41184984-41185003 | None:intergenic | 50.0% |
| ! | GTCATCACTTCGTCCCGTTT+TGG | - | chr3_4:41184988-41185007 | None:intergenic | 50.0% |
| ATGCTCGGAGTATGGTCACA+TGG | + | chr3_4:41185772-41185791 | Msa0500650:intron | 50.0% | |
| !!! | GGGTCATTTTGGCTGATGCA+TGG | + | chr3_4:41185804-41185823 | Msa0500650:intron | 50.0% |
| ! | ATTCCATGGAGCCACTTTCC+AGG | - | chr3_4:41185849-41185868 | None:intergenic | 50.0% |
| !! | AATATGCTGGTCTTGGCCCT+TGG | + | chr3_4:41186402-41186421 | Msa0500650:three_prime_UTR | 50.0% |
| TGCGTCCGACGAAGCTAGAA+TGG | + | chr3_4:41182569-41182588 | Msa0500650:exon | 55.0% | |
| !! | TGTCACTGGTGGATTCTGGC+TGG | + | chr3_4:41182674-41182693 | Msa0500650:CDS | 55.0% |
| ! | TTTCTGGTGGAAGGGGAGAG+GGG | - | chr3_4:41183291-41183310 | None:intergenic | 55.0% |
| GAAACTCGGTATCTGGCCCA+AGG | + | chr3_4:41183807-41183826 | Msa0500650:intron | 55.0% | |
| CCCAAGGACCGACTAATTCG+AGG | + | chr3_4:41183823-41183842 | Msa0500650:intron | 55.0% | |
| CCCTCGAATTAGTCGGTCCT+TGG | - | chr3_4:41183827-41183846 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | - | chr3_4:41183948-41183967 | None:intergenic | 55.0% | |
| CACACACACACACGCACACA+CGG | + | chr3_4:41184527-41184546 | Msa0500650:intron | 55.0% | |
| ACACACACACACGCACACAC+GGG | + | chr3_4:41184528-41184547 | Msa0500650:intron | 55.0% | |
| ! | GGACTTAGTGCTGGATGGAG+AGG | + | chr3_4:41185063-41185082 | Msa0500650:CDS | 55.0% |
| AGTCCTGGAAAGTGGCTCCA+TGG | + | chr3_4:41185843-41185862 | Msa0500650:intron | 55.0% | |
| GGAAATGCTAACGAGTGCCC+CGG | + | chr3_4:41185905-41185924 | Msa0500650:intron | 55.0% | |
| CTTGGGGTGTGCTCCTCTCA+AGG | - | chr3_4:41183954-41183973 | None:intergenic | 60.0% | |
| ! | CTTGAGAGGAGCACACCCCA+AGG | + | chr3_4:41183952-41183971 | Msa0500650:intron | 60.0% |
| ACACACACGCACACACGGGT+TGG | + | chr3_4:41184532-41184551 | Msa0500650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41182529 | 41186600 | 41182529 | ID=Msa0500650;Name=Msa0500650 |
| chr3_4 | mRNA | 41182529 | 41186600 | 41182529 | ID=Msa0500650-mRNA-1;Parent=Msa0500650;Name=Msa0500650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=59|1|1|1|0.66|0.75|4|224|118 |
| chr3_4 | exon | 41182529 | 41182695 | 41182529 | ID=Msa0500650-mRNA-1:exon:8494;Parent=Msa0500650-mRNA-1 |
| chr3_4 | exon | 41184952 | 41185158 | 41184952 | ID=Msa0500650-mRNA-1:exon:8495;Parent=Msa0500650-mRNA-1 |
| chr3_4 | exon | 41185613 | 41185674 | 41185613 | ID=Msa0500650-mRNA-1:exon:8496;Parent=Msa0500650-mRNA-1 |
| chr3_4 | exon | 41186397 | 41186600 | 41186397 | ID=Msa0500650-mRNA-1:exon:8497;Parent=Msa0500650-mRNA-1 |
| chr3_4 | five_prime_UTR | 41182529 | 41182587 | 41182529 | ID=Msa0500650-mRNA-1:five_prime_utr;Parent=Msa0500650-mRNA-1 |
| chr3_4 | CDS | 41182588 | 41182695 | 41182588 | ID=Msa0500650-mRNA-1:cds;Parent=Msa0500650-mRNA-1 |
| chr3_4 | CDS | 41184952 | 41185158 | 41184952 | ID=Msa0500650-mRNA-1:cds;Parent=Msa0500650-mRNA-1 |
| chr3_4 | CDS | 41185613 | 41185654 | 41185613 | ID=Msa0500650-mRNA-1:cds;Parent=Msa0500650-mRNA-1 |
| chr3_4 | three_prime_UTR | 41185655 | 41185674 | 41185655 | ID=Msa0500650-mRNA-1:three_prime_utr;Parent=Msa0500650-mRNA-1 |
| chr3_4 | three_prime_UTR | 41186397 | 41186600 | 41186397 | ID=Msa0500650-mRNA-1:three_prime_utr;Parent=Msa0500650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
