Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032230 | XP_013468967.1 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 3.18e-102 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032230 | sp|P26569|H12_ARATH | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 6.14e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032230 | A0A072VLX5 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 1.52e-102 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0032230 | 0.833902 | 4.083199e-56 | -8.615850e-47 |
| Msa0032230 | Msa0050530 | 0.800003 | 1.766959e-48 | -8.615850e-47 |
| Msa0032230 | Msa0093210 | 0.854573 | 1.125173e-61 | -8.615850e-47 |
| Msa0032230 | Msa0100600 | 0.810073 | 1.381644e-50 | -8.615850e-47 |
| Msa0032230 | Msa0125590 | 0.850277 | 1.884399e-60 | -8.615850e-47 |
| Msa0032230 | Msa0127270 | 0.964223 | 4.677083e-123 | -8.615850e-47 |
| Msa0032230 | Msa0170070 | 0.806369 | 8.506824e-50 | -8.615850e-47 |
| Msa0032230 | Msa0172480 | 0.862851 | 3.780302e-64 | -8.615850e-47 |
| Msa0032230 | Msa0172510 | 0.889606 | 2.083805e-73 | -8.615850e-47 |
| Msa0032230 | Msa0180100 | -0.816622 | 5.030470e-52 | -8.615850e-47 |
| Msa0032230 | Msa0186360 | 0.800920 | 1.149096e-48 | -8.615850e-47 |
| Msa0032230 | Msa0236820 | 0.812628 | 3.853295e-51 | -8.615850e-47 |
| Msa0032230 | Msa0314870 | 0.804610 | 1.989217e-49 | -8.615850e-47 |
| Msa0032230 | Msa0320250 | 0.802468 | 5.531367e-49 | -8.615850e-47 |
| Msa0032230 | Msa0320290 | 0.813742 | 2.193734e-51 | -8.615850e-47 |
| Msa0032230 | Msa0380490 | 0.836434 | 9.380267e-57 | -8.615850e-47 |
| Msa0032230 | Msa0382230 | 0.837137 | 6.207761e-57 | -8.615850e-47 |
| Msa0032230 | Msa0404770 | 0.804941 | 1.695868e-49 | -8.615850e-47 |
| Msa0032230 | Msa0414880 | 0.807860 | 4.111624e-50 | -8.615850e-47 |
| Msa0032230 | Msa0430000 | 0.825171 | 5.420503e-54 | -8.615850e-47 |
| Msa0032230 | Msa0433760 | 0.823666 | 1.225023e-53 | -8.615850e-47 |
| Msa0032230 | Msa0456670 | 0.825425 | 4.719941e-54 | -8.615850e-47 |
| Msa0032230 | Msa0477630 | 0.826653 | 2.411257e-54 | -8.615850e-47 |
| Msa0032230 | Msa0500570 | 0.827602 | 1.428770e-54 | -8.615850e-47 |
| Msa0032230 | Msa0503990 | 0.813047 | 3.118924e-51 | -8.615850e-47 |
| Msa0032230 | Msa0506540 | 0.827165 | 1.818951e-54 | -8.615850e-47 |
| Msa0032230 | Msa0507020 | 0.811588 | 6.494131e-51 | -8.615850e-47 |
| Msa0032230 | Msa0514020 | 0.814503 | 1.490682e-51 | -8.615850e-47 |
| Msa0032230 | Msa0520680 | 0.841067 | 5.947529e-58 | -8.615850e-47 |
| Msa0032230 | Msa0521680 | 0.810038 | 1.406147e-50 | -8.615850e-47 |
| Msa0032230 | Msa0541740 | 0.815736 | 7.936445e-52 | -8.615850e-47 |
| Msa0032230 | Msa0544410 | 0.817568 | 3.082252e-52 | -8.615850e-47 |
| Msa0032230 | Msa0544430 | 0.806323 | 8.699597e-50 | -8.615850e-47 |
| Msa0032230 | Msa0554300 | 0.802641 | 5.094710e-49 | -8.615850e-47 |
| Msa0032230 | Msa0572830 | 0.818929 | 1.516764e-52 | -8.615850e-47 |
| Msa0032230 | Msa0640800 | 0.820023 | 8.538140e-53 | -8.615850e-47 |
| Msa0032230 | Msa0648760 | 0.800839 | 1.193662e-48 | -8.615850e-47 |
| Msa0032230 | Msa0657210 | 0.816901 | 4.353698e-52 | -8.615850e-47 |
| Msa0032230 | Msa0701250 | 0.815515 | 8.887532e-52 | -8.615850e-47 |
| Msa0032230 | Msa0720280 | 0.800741 | 1.250040e-48 | -8.615850e-47 |
| Msa0032230 | Msa0861440 | 0.814022 | 1.903828e-51 | -8.615850e-47 |
| Msa0032230 | Msa0880280 | 0.864112 | 1.536533e-64 | -8.615850e-47 |
| Msa0032230 | Msa0926310 | 0.849745 | 2.654171e-60 | -8.615850e-47 |
| Msa0032230 | Msa1000780 | 0.865085 | 7.624522e-65 | -8.615850e-47 |
| Msa0032230 | Msa1188790 | 0.824638 | 7.240883e-54 | -8.615850e-47 |
| Msa0032230 | Msa1211640 | 0.807766 | 4.305422e-50 | -8.615850e-47 |
| Msa0032230 | Msa1219640 | 0.855961 | 4.439135e-62 | -8.615850e-47 |
| Msa0032230 | Msa1242960 | 0.807747 | 4.346042e-50 | -8.615850e-47 |
| Msa0032230 | Msa1266620 | 0.859003 | 5.585583e-63 | -8.615850e-47 |
| Msa0032230 | Msa1267150 | 0.845067 | 5.118140e-59 | -8.615850e-47 |
| Msa0032230 | Msa1267930 | 0.815688 | 8.134022e-52 | -8.615850e-47 |
| Msa0032230 | Msa1293610 | 0.826980 | 2.013863e-54 | -8.615850e-47 |
| Msa0032230 | Msa1333650 | 0.860409 | 2.108167e-63 | -8.615850e-47 |
| Msa0032230 | Msa1339230 | 0.863681 | 2.092007e-64 | -8.615850e-47 |
| Msa0032230 | Msa1381470 | 0.827860 | 1.238573e-54 | -8.615850e-47 |
| Msa0032230 | Msa1387500 | 0.811584 | 6.506398e-51 | -8.615850e-47 |
| Msa0032230 | Msa1393560 | 0.806596 | 7.619852e-50 | -8.615850e-47 |
| Msa0032230 | Msa1399190 | 0.855346 | 6.707968e-62 | -8.615850e-47 |
| Msa0032230 | Msa1426320 | 0.808846 | 2.534054e-50 | -8.615850e-47 |
| Msa0032230 | Msa1428690 | 0.841905 | 3.577620e-58 | -8.615850e-47 |
| Msa0032230 | Msa1435100 | 0.836192 | 1.080784e-56 | -8.615850e-47 |
| Msa0032230 | Msa1439730 | 0.850838 | 1.310318e-60 | -8.615850e-47 |
| Msa0032230 | Msa1444930 | 0.844959 | 5.472081e-59 | -8.615850e-47 |
| Msa0032230 | Msa1461260 | 0.817675 | 2.915263e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032230 | MtrunA17_Chr1g0190561 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 2.92e-106 | 302 |
| Msa0032230 | MtrunA17_Chr1g0184561 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 5.78e-27 | 102 |
| Msa0032230 | MtrunA17_Chr1g0184671 | 64.865 | 111 | 37 | 2 | 24 | 132 | 9 | 119 | 1.33e-26 | 100 |
| Msa0032230 | MtrunA17_Chr1g0184661 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 1.46e-26 | 101 |
| Msa0032230 | MtrunA17_Chr7g0260771 | 61.644 | 73 | 28 | 0 | 19 | 91 | 56 | 128 | 8.12e-26 | 100 |
| Msa0032230 | MtrunA17_Chr5g0405221 | 46.316 | 95 | 39 | 3 | 1 | 94 | 22 | 105 | 6.49e-18 | 76.6 |
| Msa0032230 | MtrunA17_Chr8g0372961 | 69.048 | 42 | 13 | 0 | 12 | 53 | 49 | 90 | 1.79e-13 | 63.2 |
| Msa0032230 | MtrunA17_Chr3g0110481 | 42.857 | 70 | 40 | 0 | 20 | 89 | 8 | 77 | 5.88e-13 | 63.9 |
| Msa0032230 | MtrunA17_Chr6g0482691 | 44.444 | 72 | 37 | 1 | 23 | 91 | 40 | 111 | 1.32e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032230 | AT2G30620.2 | 67.708 | 96 | 30 | 1 | 24 | 119 | 61 | 155 | 1.78e-32 | 115 |
| Msa0032230 | AT2G30620.1 | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 6.24e-32 | 116 |
| Msa0032230 | AT1G06760.1 | 77.941 | 68 | 15 | 0 | 24 | 91 | 61 | 128 | 1.01e-23 | 94.7 |
| Msa0032230 | AT2G18050.1 | 44.094 | 127 | 62 | 3 | 14 | 131 | 8 | 134 | 2.65e-21 | 85.9 |
| Msa0032230 | AT2G18050.2 | 39.024 | 123 | 70 | 3 | 31 | 148 | 1 | 123 | 8.24e-17 | 73.6 |
Find 53 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGCTTCGCCGCTGCTTT+TGG | 0.203938 | 1_1:+59228411 | None:intergenic |
| ATTATAATTATAATATTATT+AGG | 0.230112 | 1_1:-59228184 | Msa0032230:three_prime_UTR |
| TTTGGCTTTGCGGCAGCTTT+CGG | 0.250457 | 1_1:+59228429 | None:intergenic |
| TTTGCTGTAAATTCTTTGAT+AGG | 0.309454 | 1_1:-59228153 | Msa0032230:three_prime_UTR |
| CCCTTAACACTCTTCGCTTT+CGG | 0.311339 | 1_1:+59228375 | None:intergenic |
| TTCACAGCAGCTTTCGCTTT+CGG | 0.315371 | 1_1:+59228453 | None:intergenic |
| CTGAAGAAATCTGTGGCTTC+TGG | 0.328322 | 1_1:-59228609 | Msa0032230:CDS |
| AAACAGAAAACTAATTCATT+AGG | 0.336989 | 1_1:+59228095 | None:intergenic |
| CTTGGTCTGAGCAGCGGCGG+TGG | 0.350352 | 1_1:+59228912 | None:intergenic |
| TTCGGCTTCACAACAGCTTT+AGG | 0.372527 | 1_1:+59228393 | None:intergenic |
| TTAGTTGCAGCCTTAGCGGC+TGG | 0.381676 | 1_1:+59228477 | None:intergenic |
| ACCGGAGTCTTAACACTCTT+CGG | 0.394389 | 1_1:+59228309 | None:intergenic |
| TTCTTCGCCGCTTTCTTCAC+AGG | 0.416978 | 1_1:+59228348 | None:intergenic |
| AGAATGAGTTTGCGGAATGT+TGG | 0.442341 | 1_1:+59228639 | None:intergenic |
| GGAGCAGTAGCGGCCTTCAC+CGG | 0.448419 | 1_1:+59228528 | None:intergenic |
| GATGAAGAAGAATGAGTTTG+CGG | 0.452593 | 1_1:+59228631 | None:intergenic |
| GTGAGTTTGAAAGAAAGAAC+TGG | 0.455638 | 1_1:-59228717 | Msa0032230:CDS |
| CACTTCTTAGCTTTCTTCAC+CGG | 0.455761 | 1_1:+59228291 | None:intergenic |
| CCGAAAGCGAAGAGTGTTAA+GGG | 0.457605 | 1_1:-59228375 | Msa0032230:CDS |
| GCCGAAAGCGAAGAGTGTTA+AGG | 0.460757 | 1_1:-59228376 | Msa0032230:CDS |
| CGCTACTGCTCCTGCTAAGA+AGG | 0.467466 | 1_1:-59228517 | Msa0032230:CDS |
| CATGGTTGAGACTTGAGATT+CGG | 0.468277 | 1_1:+59228939 | None:intergenic |
| TAGTGATGTGTGAAATTTGA+GGG | 0.475301 | 1_1:-59228239 | Msa0032230:three_prime_UTR |
| CGGCTTAGTTGCAGCCTTAG+CGG | 0.476251 | 1_1:+59228473 | None:intergenic |
| ACAGCCTTAGCCTTCTTAGC+AGG | 0.476334 | 1_1:+59228507 | None:intergenic |
| AACTCTTTCTCTCTCTAAAA+CGG | 0.479913 | 1_1:-59228982 | Msa0032230:five_prime_UTR |
| TTGGTCTGAGCAGCGGCGGT+GGG | 0.488362 | 1_1:+59228913 | None:intergenic |
| GTTATTACCTCAGCGTAAGT+AGG | 0.507761 | 1_1:+59228844 | None:intergenic |
| GGCGAAAACTGCTCCGGTGA+AGG | 0.508511 | 1_1:-59228541 | Msa0032230:CDS |
| TGTGAAGAAAGCGGCGAAGA+AGG | 0.511913 | 1_1:-59228346 | Msa0032230:CDS |
| AGCAGCGGCGGTGGGAGACA+TGG | 0.520541 | 1_1:+59228921 | None:intergenic |
| TGAATTTCGTTATCGCGTGT+TGG | 0.523300 | 1_1:+59228688 | None:intergenic |
| TGTTACGAAGCCAGCCGCTA+AGG | 0.527612 | 1_1:-59228487 | Msa0032230:CDS |
| CTTCAAAATCGCTCCGGCAG+CGG | 0.533005 | 1_1:-59228562 | Msa0032230:CDS |
| ATTCATCGAAGAGAAGCATA+AGG | 0.536890 | 1_1:-59228670 | Msa0032230:CDS |
| TGCCGCAAAGCCAAAAGCAG+CGG | 0.551299 | 1_1:-59228421 | Msa0032230:CDS |
| TGCTCCTGCTAAGAAGGCTA+AGG | 0.552889 | 1_1:-59228511 | Msa0032230:CDS |
| AAACTCCTTCAAAATCGCTC+CGG | 0.553204 | 1_1:-59228568 | Msa0032230:CDS |
| GAGAGGCTTCTTTGCTGCAG+CGG | 0.555043 | 1_1:+59228873 | None:intergenic |
| GGGCTTGGTCTGAGCAGCGG+CGG | 0.555862 | 1_1:+59228909 | None:intergenic |
| GGCAGCGGCGAAAACTGCTC+CGG | 0.555880 | 1_1:-59228547 | Msa0032230:CDS |
| ATAATTATAATATTATTAGG+AGG | 0.563101 | 1_1:-59228181 | Msa0032230:three_prime_UTR |
| AAAATTAGGGTTTAATTTGG+GGG | 0.564924 | 1_1:-59228266 | Msa0032230:three_prime_UTR |
| CTTGGGCTTGGTCTGAGCAG+CGG | 0.578998 | 1_1:+59228906 | None:intergenic |
| TCTTCATCTGAAGAAATCTG+TGG | 0.580993 | 1_1:-59228616 | Msa0032230:CDS |
| GGCTTCTGGCAAGCTCGTGA+AGG | 0.588674 | 1_1:-59228595 | Msa0032230:CDS |
| GCCGAAGAGTGTTAAGACTC+CGG | 0.591306 | 1_1:-59228310 | Msa0032230:CDS |
| TTAGTGATGTGTGAAATTTG+AGG | 0.614228 | 1_1:-59228240 | Msa0032230:three_prime_UTR |
| CTTCTTAGCAGGAGCAGTAG+CGG | 0.626747 | 1_1:+59228518 | None:intergenic |
| GAAGAAAGCGGCGAAGAAGG+TGG | 0.636706 | 1_1:-59228343 | Msa0032230:CDS |
| CTCTCATCCTACTTACGCTG+AGG | 0.643185 | 1_1:-59228851 | Msa0032230:intron |
| GCGTAAGTAGGATGAGAGAG+AGG | 0.655352 | 1_1:+59228856 | None:intergenic |
| GGGTACGCCTGTGAAGAAAG+CGG | 0.711847 | 1_1:-59228355 | Msa0032230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATAATATTATT+AGG | - | chr1_1:59228928-59228947 | Msa0032230:exon | 0.0% |
| !! | ATTATAATTATAATATTATT+AGG | - | chr1_1:59228928-59228947 | Msa0032230:exon | 0.0% |
| !! | ATAATTATAATATTATTAGG+AGG | - | chr1_1:59228931-59228950 | Msa0032230:exon | 10.0% |
| !! | ATAATTATAATATTATTAGG+AGG | - | chr1_1:59228931-59228950 | Msa0032230:exon | 10.0% |
| !!! | AAAAAATTAGGGTTTAATTT+GGG | - | chr1_1:59228844-59228863 | Msa0032230:intron | 15.0% |
| !!! | AAAAAATTAGGGTTTAATTT+GGG | - | chr1_1:59228844-59228863 | Msa0032230:intron | 15.0% |
| !! | GAAAAAATTAGGGTTTAATT+TGG | - | chr1_1:59228843-59228862 | Msa0032230:intron | 20.0% |
| !!! | AAAAATTAGGGTTTAATTTG+GGG | - | chr1_1:59228845-59228864 | Msa0032230:intron | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | + | chr1_1:59229020-59229039 | None:intergenic | 20.0% |
| !! | GAAAAAATTAGGGTTTAATT+TGG | - | chr1_1:59228843-59228862 | Msa0032230:intron | 20.0% |
| !!! | AAAAATTAGGGTTTAATTTG+GGG | - | chr1_1:59228845-59228864 | Msa0032230:intron | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | + | chr1_1:59229020-59229039 | None:intergenic | 20.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | - | chr1_1:59228832-59228851 | Msa0032230:intron | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | - | chr1_1:59228833-59228852 | Msa0032230:intron | 25.0% |
| !!! | AAAATTAGGGTTTAATTTGG+GGG | - | chr1_1:59228846-59228865 | Msa0032230:intron | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | - | chr1_1:59228959-59228978 | Msa0032230:five_prime_UTR | 25.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | - | chr1_1:59228832-59228851 | Msa0032230:intron | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | - | chr1_1:59228833-59228852 | Msa0032230:intron | 25.0% |
| !!! | AAAATTAGGGTTTAATTTGG+GGG | - | chr1_1:59228846-59228865 | Msa0032230:intron | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | - | chr1_1:59228959-59228978 | Msa0032230:five_prime_UTR | 25.0% |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | - | chr1_1:59228130-59228149 | Msa0032230:three_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | - | chr1_1:59228872-59228891 | Msa0032230:CDS | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | - | chr1_1:59228873-59228892 | Msa0032230:CDS | 30.0% | |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | - | chr1_1:59228130-59228149 | Msa0032230:three_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | - | chr1_1:59228872-59228891 | Msa0032230:CDS | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | - | chr1_1:59228873-59228892 | Msa0032230:CDS | 30.0% | |
| GTGAGTTTGAAAGAAAGAAC+TGG | - | chr1_1:59228395-59228414 | Msa0032230:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | - | chr1_1:59228442-59228461 | Msa0032230:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | + | chr1_1:59228484-59228503 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | - | chr1_1:59228496-59228515 | Msa0032230:CDS | 35.0% | |
| GTGAGTTTGAAAGAAAGAAC+TGG | - | chr1_1:59228395-59228414 | Msa0032230:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | - | chr1_1:59228442-59228461 | Msa0032230:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | + | chr1_1:59228484-59228503 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | - | chr1_1:59228496-59228515 | Msa0032230:CDS | 35.0% | |
| CATGGTTGAGACTTGAGATT+CGG | + | chr1_1:59228176-59228195 | None:intergenic | 40.0% | |
| GTTATTACCTCAGCGTAAGT+AGG | + | chr1_1:59228271-59228290 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | + | chr1_1:59228427-59228446 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | + | chr1_1:59228476-59228495 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | - | chr1_1:59228544-59228563 | Msa0032230:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | + | chr1_1:59228824-59228843 | None:intergenic | 40.0% |
| CATGGTTGAGACTTGAGATT+CGG | + | chr1_1:59228176-59228195 | None:intergenic | 40.0% | |
| GTTATTACCTCAGCGTAAGT+AGG | + | chr1_1:59228271-59228290 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | + | chr1_1:59228427-59228446 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | + | chr1_1:59228476-59228495 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | - | chr1_1:59228544-59228563 | Msa0032230:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | + | chr1_1:59228824-59228843 | None:intergenic | 40.0% |
| ! | TTTGCTGCAGCGGTTTTCTT+TGG | + | chr1_1:59228232-59228251 | None:intergenic | 45.0% |
| CTGAAGAAATCTGTGGCTTC+TGG | - | chr1_1:59228503-59228522 | Msa0032230:CDS | 45.0% | |
| TTCACAGCAGCTTTCGCTTT+CGG | + | chr1_1:59228662-59228681 | None:intergenic | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | + | chr1_1:59228722-59228741 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | + | chr1_1:59228740-59228759 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | - | chr1_1:59228737-59228756 | Msa0032230:CDS | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | + | chr1_1:59228806-59228825 | None:intergenic | 45.0% | |
| ! | TTTGCTGCAGCGGTTTTCTT+TGG | + | chr1_1:59228232-59228251 | None:intergenic | 45.0% |
| CTGAAGAAATCTGTGGCTTC+TGG | - | chr1_1:59228503-59228522 | Msa0032230:CDS | 45.0% | |
| TTCACAGCAGCTTTCGCTTT+CGG | + | chr1_1:59228662-59228681 | None:intergenic | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | + | chr1_1:59228722-59228741 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | + | chr1_1:59228740-59228759 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | - | chr1_1:59228737-59228756 | Msa0032230:CDS | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | + | chr1_1:59228806-59228825 | None:intergenic | 45.0% | |
| !!! | GGTTTTCTTTGGCTTGGGCT+TGG | + | chr1_1:59228221-59228240 | None:intergenic | 50.0% |
| !! | GCAGCGGTTTTCTTTGGCTT+GGG | + | chr1_1:59228226-59228245 | None:intergenic | 50.0% |
| ! | TGCAGCGGTTTTCTTTGGCT+TGG | + | chr1_1:59228227-59228246 | None:intergenic | 50.0% |
| GCGTAAGTAGGATGAGAGAG+AGG | + | chr1_1:59228259-59228278 | None:intergenic | 50.0% | |
| CTCTCATCCTACTTACGCTG+AGG | - | chr1_1:59228261-59228280 | Msa0032230:three_prime_UTR | 50.0% | |
| CTTCTTAGCAGGAGCAGTAG+CGG | + | chr1_1:59228597-59228616 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | - | chr1_1:59228601-59228620 | Msa0032230:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | + | chr1_1:59228608-59228627 | None:intergenic | 50.0% |
| !! | TTTGGCTTTGCGGCAGCTTT+CGG | + | chr1_1:59228686-59228705 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | - | chr1_1:59228736-59228755 | Msa0032230:CDS | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | + | chr1_1:59228767-59228786 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | - | chr1_1:59228766-59228785 | Msa0032230:intron | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | - | chr1_1:59228802-59228821 | Msa0032230:intron | 50.0% |
| !!! | GGTTTTCTTTGGCTTGGGCT+TGG | + | chr1_1:59228221-59228240 | None:intergenic | 50.0% |
| !! | GCAGCGGTTTTCTTTGGCTT+GGG | + | chr1_1:59228226-59228245 | None:intergenic | 50.0% |
| ! | TGCAGCGGTTTTCTTTGGCT+TGG | + | chr1_1:59228227-59228246 | None:intergenic | 50.0% |
| GCGTAAGTAGGATGAGAGAG+AGG | + | chr1_1:59228259-59228278 | None:intergenic | 50.0% | |
| CTCTCATCCTACTTACGCTG+AGG | - | chr1_1:59228261-59228280 | Msa0032230:three_prime_UTR | 50.0% | |
| CTTCTTAGCAGGAGCAGTAG+CGG | + | chr1_1:59228597-59228616 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | - | chr1_1:59228601-59228620 | Msa0032230:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | + | chr1_1:59228608-59228627 | None:intergenic | 50.0% |
| !! | TTTGGCTTTGCGGCAGCTTT+CGG | + | chr1_1:59228686-59228705 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | - | chr1_1:59228736-59228755 | Msa0032230:CDS | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | + | chr1_1:59228767-59228786 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | - | chr1_1:59228766-59228785 | Msa0032230:intron | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | - | chr1_1:59228802-59228821 | Msa0032230:intron | 50.0% |
| GAGAGGCTTCTTTGCTGCAG+CGG | + | chr1_1:59228242-59228261 | None:intergenic | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | - | chr1_1:59228550-59228569 | Msa0032230:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | - | chr1_1:59228595-59228614 | Msa0032230:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGCTA+AGG | - | chr1_1:59228625-59228644 | Msa0032230:CDS | 55.0% | |
| TTAGTTGCAGCCTTAGCGGC+TGG | + | chr1_1:59228638-59228657 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAG+CGG | + | chr1_1:59228642-59228661 | None:intergenic | 55.0% | |
| TGCCGCAAAGCCAAAAGCAG+CGG | - | chr1_1:59228691-59228710 | Msa0032230:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | + | chr1_1:59228704-59228723 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | - | chr1_1:59228757-59228776 | Msa0032230:intron | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | - | chr1_1:59228769-59228788 | Msa0032230:intron | 55.0% | |
| GAGAGGCTTCTTTGCTGCAG+CGG | + | chr1_1:59228242-59228261 | None:intergenic | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | - | chr1_1:59228550-59228569 | Msa0032230:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | - | chr1_1:59228595-59228614 | Msa0032230:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGCTA+AGG | - | chr1_1:59228625-59228644 | Msa0032230:CDS | 55.0% | |
| TTAGTTGCAGCCTTAGCGGC+TGG | + | chr1_1:59228638-59228657 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAG+CGG | + | chr1_1:59228642-59228661 | None:intergenic | 55.0% | |
| TGCCGCAAAGCCAAAAGCAG+CGG | - | chr1_1:59228691-59228710 | Msa0032230:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | + | chr1_1:59228704-59228723 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | - | chr1_1:59228757-59228776 | Msa0032230:intron | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | - | chr1_1:59228769-59228788 | Msa0032230:intron | 55.0% | |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | + | chr1_1:59228209-59228228 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | - | chr1_1:59228517-59228536 | Msa0032230:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | + | chr1_1:59228552-59228571 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | - | chr1_1:59228571-59228590 | Msa0032230:CDS | 60.0% | |
| !!! | CGCCGCTGCTTTTGGCTTTG+CGG | + | chr1_1:59228696-59228715 | None:intergenic | 60.0% |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | + | chr1_1:59228209-59228228 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | - | chr1_1:59228517-59228536 | Msa0032230:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | + | chr1_1:59228552-59228571 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | - | chr1_1:59228571-59228590 | Msa0032230:CDS | 60.0% | |
| !!! | CGCCGCTGCTTTTGGCTTTG+CGG | + | chr1_1:59228696-59228715 | None:intergenic | 60.0% |
| TTGGTCTGAGCAGCGGCGGT+GGG | + | chr1_1:59228202-59228221 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | + | chr1_1:59228566-59228585 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | - | chr1_1:59228565-59228584 | Msa0032230:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | + | chr1_1:59228587-59228606 | None:intergenic | 65.0% | |
| TTGGTCTGAGCAGCGGCGGT+GGG | + | chr1_1:59228202-59228221 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | + | chr1_1:59228566-59228585 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | - | chr1_1:59228565-59228584 | Msa0032230:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | + | chr1_1:59228587-59228606 | None:intergenic | 65.0% | |
| AGCAGCGGCGGTGGGAGACA+TGG | + | chr1_1:59228194-59228213 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | + | chr1_1:59228203-59228222 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | + | chr1_1:59228206-59228225 | None:intergenic | 70.0% |
| AGCAGCGGCGGTGGGAGACA+TGG | + | chr1_1:59228194-59228213 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | + | chr1_1:59228203-59228222 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | + | chr1_1:59228206-59228225 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59228088 | 59229046 | 59228088 | ID=Msa0032230;Name=Msa0032230 |
| chr1_1 | mRNA | 59228088 | 59229046 | 59228088 | ID=Msa0032230-mRNA-1;Parent=Msa0032230;Name=Msa0032230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|202|185 |
| chr1_1 | exon | 59228088 | 59228757 | 59228088 | ID=Msa0032230-mRNA-1:exon:18260;Parent=Msa0032230-mRNA-1 |
| chr1_1 | exon | 59228852 | 59229046 | 59228852 | ID=Msa0032230-mRNA-1:exon:18259;Parent=Msa0032230-mRNA-1 |
| chr1_1 | five_prime_UTR | 59228942 | 59229046 | 59228942 | ID=Msa0032230-mRNA-1:five_prime_utr;Parent=Msa0032230-mRNA-1 |
| chr1_1 | CDS | 59228852 | 59228941 | 59228852 | ID=Msa0032230-mRNA-1:cds;Parent=Msa0032230-mRNA-1 |
| chr1_1 | CDS | 59228290 | 59228757 | 59228290 | ID=Msa0032230-mRNA-1:cds;Parent=Msa0032230-mRNA-1 |
| chr1_1 | three_prime_UTR | 59228088 | 59228289 | 59228088 | ID=Msa0032230-mRNA-1:three_prime_utr;Parent=Msa0032230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
