AlfalfaGEDB | Msa1441960

M. sativa cultivar zhongmu-4 / Msa1441960

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1441960	A0A072TQW7	99.517	207	1	0	1	207	1	207	3.67e-147	417

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa1441960	0.831583	1.537134e-55	-8.615850e-47
Msa0019930	Msa1441960	0.813405	2.603041e-51	-8.615850e-47
Msa0029380	Msa1441960	0.804131	2.502798e-49	-8.615850e-47
Msa0048510	Msa1441960	0.822281	2.576316e-53	-8.615850e-47
Msa0065020	Msa1441960	0.838004	3.719105e-57	-8.615850e-47
Msa0068150	Msa1441960	0.801206	1.004641e-48	-8.615850e-47
Msa0077560	Msa1441960	0.877695	5.111800e-69	-8.615850e-47
Msa0081980	Msa1441960	0.804787	1.826944e-49	-8.615850e-47
Msa0082020	Msa1441960	0.802163	6.390471e-49	-8.615850e-47
Msa0094780	Msa1441960	0.801381	9.249500e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1441960	MtrunA17_Chr8g0358741	99.517	207	1	0	1	207	46	252	4.35e-150	416
Msa1441960	MtrunA17_Chr3g0103341	37.500	192	113	3	23	207	41	232	5.18e-25	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1441960	AT3G12870.1	72.139	201	52	1	10	206	5	205	1.73e-99	287
Msa1441960	AT5G56120.1	38.000	200	117	3	15	207	36	235	3.25e-27	103

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Find 51 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAGAACTCATCAA+TGG	0.532094	tig0029550:-14227	Msa1441960:CDS
AAAGCATTGTGATTTCTTTG+CGG	0.474720	tig0029550:+14168	None:intergenic
AAAGTAAAGAAGTTAGGAAA+TGG	0.454954	tig0029550:-13836	Msa1441960:CDS
AAGAGGATCGCGGATTGTTG+AGG	0.566520	tig0029550:-13950	Msa1441960:CDS
AAGAGTTGAAGAGGAGCATG+AGG	0.477929	tig0029550:+14114	None:intergenic
AAGGGTTATCTTGTGTAGTT+AGG	0.302967	tig0029550:-13751	None:intergenic
AAGTTAGGAAATGGTCTTCA+AGG	0.444925	tig0029550:-13827	Msa1441960:CDS
AATAACAAAGAACAGAGTGA+TGG	0.557124	tig0029550:+14050	None:intergenic
ACAAACTCCTCTTAAAGCAA+TGG	0.614010	tig0029550:-14253	Msa1441960:CDS
AGAGTTGAAGAGGAGCATGA+GGG	0.559380	tig0029550:+14115	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGATCTTCAATCATGGAA+TGG	-	tig0029550:13786-13805	Msa1441960:CDS	30.0%
AAAGAAGAAGAACTCATCAA+TGG	-	tig0029550:13878-13897	Msa1441960:CDS	30.0%
TAAAGCTTGTCACAAATCAT+GGG	-	tig0029550:14030-14049	Msa1441960:CDS	30.0%
ATAACAAAGAACAGAGTGAT+GGG	+	tig0029550:14057-14076	None:intergenic	30.0%
AATAACAAAGAACAGAGTGA+TGG	+	tig0029550:14058-14077	None:intergenic	30.0%
GAGTTGAAAGTAAAGAAGTT+AGG	-	tig0029550:14263-14282	Msa1441960:CDS	30.0%
CAGTGTAAGATCTTCAATCA+TGG	-	tig0029550:13781-13800	Msa1441960:CDS	35.0%
ACAAACTCCTCTTAAAGCAA+TGG	-	tig0029550:13852-13871	Msa1441960:CDS	35.0%
CTAAAGCTTGTCACAAATCA+TGG	-	tig0029550:14029-14048	Msa1441960:CDS	35.0%
TGGAGGAATTGAAGAAGAAA+GGG	-	tig0029550:14185-14204	Msa1441960:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0029550	gene	13752	14375	13752	ID=Msa1441960;Name=Msa1441960
tig0029550	mRNA	13752	14375	13752	ID=Msa1441960-mRNA-1;Parent=Msa1441960;Name=Msa1441960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|207
tig0029550	exon	13752	14375	13752	ID=Msa1441960-mRNA-1:exon:13117;Parent=Msa1441960-mRNA-1
tig0029550	CDS	13752	14375	13752	ID=Msa1441960-mRNA-1:cds;Parent=Msa1441960-mRNA-1

Gene Sequence

>Msa1441960

ATGGCTAATACAAACACTGATGAACACAACAGTGTAAGATCTTCAATCATGGAATGGAAACAAATGCACCCACTTCACCAAATTGCCGAAACACCAACCCACAAACTCCTCTTAAAGCAATGGCTCAAAGAAGAAGAACTCATCAATGGTCGCATAGCTTTAAAAGAAACCCAGATAGATTCAATCCGCAAAGAAATCACAATGCTTTACATCTTCTTCTTCCTCTTCCATTCAACTACCCTCATGCTCCTCTTCAACTCTTCCTCTGATACAACACCTAAAGCTTGTCACAAATCATGGGTCCCATCACTCTGTTCTTTGTTATTTTCACTAGGGCTTATATGGGCTTTGAGGTATAAGAGTGATGTAGAGGCTCATATGGAGAAGATGCTTTCGAGGGAGAAAGAGGATCGCGGATTGTTGAGGAAATGTGTGGAGGAATTGAAGAAGAAAGGGTTGGAGTTTGATTTGTTGAAGGAAGTTGATGCTTTGAGAAGGGCTAAGAGTTTGAGAGTTGAAAGTAAAGAAGTTAGGAAATGGTCTTCAAGGGATTTTGTTTCTCTGTTTTTCTTCTCAATGGCTTGTTTGTCTCTTGCTGTCATAAGGGTTATCTTGTGTAGTTAG

Protein sequence

>Msa1441960

MANTNTDEHNSVRSSIMEWKQMHPLHQIAETPTHKLLLKQWLKEEELINGRIALKETQIDSIRKEITMLYIFFFLFHSTTLMLLFNSSSDTTPKACHKSWVPSLCSLLFSLGLIWALRYKSDVEAHMEKMLSREKEDRGLLRKCVEELKKKGLEFDLLKEVDALRRAKSLRVESKEVRKWSSRDFVSLFFFSMACLSLAVIRVILCS*