AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190310 MtrunA17_Chr2g0279881 99.142 466 4 0 1 466 1 466 0.0 944
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190310 AT2G04305.1 71.591 440 92 4 27 466 28 434 0.0 636

Find 155 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTATATATTTGATGGTT+TGG 0.264995 2_1:-5823992 Msa0190310:CDS
GCTTATATATTTGATGGTTT+GGG 0.270345 2_1:-5823991 Msa0190310:CDS
TTAAAATCATAGGTTAGATT+TGG 0.277818 2_1:-5824724 Msa0190310:five_prime_UTR
AACTCCCTTGAAGAACTAAT+TGG 0.282820 2_1:-5821244 Msa0190310:CDS
TTCTTTCACTTGTTAGTAAT+GGG 0.288498 2_1:-5823777 Msa0190310:CDS
TAAAGTGAAGTGGGTGTTCC+TGG 0.310168 2_1:-5824775 None:intergenic
AGGAAGTGGGACTGTGATTA+AGG 0.316220 2_1:-5823527 Msa0190310:CDS
ACAATTGGGTTAGTATAGTA+TGG 0.317058 2_1:-5824259 Msa0190310:five_prime_UTR
GATTCAAATTGCATAAAGTT+TGG 0.321086 2_1:-5824414 Msa0190310:five_prime_UTR
CCCTTCTCATCCTGTAGGTT+TGG 0.326308 2_1:-5824025 Msa0190310:CDS
TTTGGATTTGAGATTACAAT+TGG 0.326315 2_1:-5824274 Msa0190310:five_prime_UTR
ATGTCCGCCATTGAAATTAC+AGG 0.332688 2_1:-5823803 Msa0190310:CDS
AAGAGAGCTTATATATTTGA+TGG 0.334219 2_1:-5823997 Msa0190310:CDS
CTAATAAAATTGACATTTAG+TGG 0.337382 2_1:-5820556 Msa0190310:three_prime_UTR
TGCAAATTAATATGTATCTT+GGG 0.342628 2_1:+5821898 None:intergenic
CTTCTTAGGGGAGGGGTATG+TGG 0.342971 2_1:-5820416 Msa0190310:three_prime_UTR
GGGGTTACCTTCGGATTTAA+TGG 0.348587 2_1:-5820720 Msa0190310:exon
GAAAATTTGAATATTGAAGT+TGG 0.349289 2_1:-5824220 Msa0190310:five_prime_UTR
ACATATTGTGCATTAGTGTT+AGG 0.354751 2_1:-5824167 Msa0190310:five_prime_UTR
GCGTATAAAGAGCAGGAAAA+AGG 0.358975 2_1:+5820848 None:intergenic
TTCAAGTTACACTATACTTT+GGG 0.360798 2_1:-5820654 Msa0190310:three_prime_UTR
CTGCAAATTAATATGTATCT+TGG 0.362936 2_1:+5821897 None:intergenic
GACAACTTCTGATTCCCTTT+TGG 0.370789 2_1:+5823856 None:intergenic
GTTAAAGAAATGTATATTGA+TGG 0.372724 2_1:+5820391 None:intergenic
TCGGTTAGGTTTCTCACGTA+TGG 0.375920 2_1:-5823617 Msa0190310:CDS
ATGAGAGATAGTACAGTTTA+CGG 0.380232 2_1:+5821125 None:intergenic
TTCTTAGGGGAGGGGTATGT+GGG 0.381436 2_1:-5820415 Msa0190310:three_prime_UTR
AGAAAACTCTTGGAAGAAAC+TGG 0.382484 2_1:-5820801 Msa0190310:CDS
ATTCAAGTTACACTATACTT+TGG 0.384160 2_1:-5820655 Msa0190310:three_prime_UTR
GAGGATTCGATTTGTGCTTC+TGG 0.386483 2_1:+5820518 None:intergenic
CTCATGAAGCACAGATTCTC+TGG 0.387452 2_1:-5820498 Msa0190310:three_prime_UTR
ACCTTCCAATTAGTTCTTCA+AGG 0.391400 2_1:+5821239 None:intergenic
GGCATAGAGTAATGGAGAAT+GGG 0.391709 2_1:-5824098 Msa0190310:CDS
ATTCTTTCACTTGTTAGTAA+TGG 0.392961 2_1:-5823778 Msa0190310:CDS
TATGGGTGAATCTTTACTTT+CGG 0.394363 2_1:-5823599 Msa0190310:CDS
GAAAAGTGAGAGGTTGAATC+TGG 0.395533 2_1:+5824541 None:intergenic
ATGTGACAAAATTCAAAATC+AGG 0.395791 2_1:+5824666 None:intergenic
TCGGTGATTACAGTGTCCTT+AGG 0.396477 2_1:-5823649 Msa0190310:CDS
TTAGGGCGTGTTCCTCGGTT+AGG 0.400753 2_1:-5823631 Msa0190310:CDS
GAATCCCAAATTAAAATCAT+AGG 0.404059 2_1:-5824734 Msa0190310:five_prime_UTR
CTCCCCTTATCCATCATAAC+AGG 0.404490 2_1:-5821085 Msa0190310:CDS
AGGCATAGAGTAATGGAGAA+TGG 0.405499 2_1:-5824099 Msa0190310:CDS
TGCTAGAGTTACTGAAAATT+CGG 0.410512 2_1:-5823668 Msa0190310:CDS
GTCGAGCTTGATCTGGATAA+AGG 0.411067 2_1:-5823349 Msa0190310:intron
CCTCCTGTTATGATGGATAA+GGG 0.411565 2_1:+5821082 None:intergenic
TTATAATAAGGAGTGGGATC+TGG 0.412024 2_1:-5823962 Msa0190310:CDS
GGGGTAATTTGTGAAAGTTA+TGG 0.412235 2_1:-5824133 Msa0190310:exon
ACCGTCTACATGTGCACAAA+AGG 0.425255 2_1:+5823753 None:intergenic
GCCGTATCATCTATTCTTAA+CGG 0.430746 2_1:+5820748 None:intergenic
TAATCGTGTCACGGCAATAC+AGG 0.430963 2_1:-5821182 Msa0190310:CDS
TTTCTAACCTCCTGTTATGA+TGG 0.437078 2_1:+5821075 None:intergenic
TCGGATGCGGTGGAAGGTCG+AGG 0.444508 2_1:-5823910 Msa0190310:CDS
AGCTTCCTCGGAATGATTCA+TGG 0.445172 2_1:+5823480 None:intergenic
TCAAAATTCCCCGGAGCTAA+AGG 0.445897 2_1:-5820932 Msa0190310:CDS
CGAAAACCATCCTTTAGCTC+CGG 0.446111 2_1:+5820922 None:intergenic
TGGCGAGAAAAGAAAACTCT+TGG 0.447700 2_1:-5820811 Msa0190310:CDS
GGACTCTGTCGAGCTTGATC+TGG 0.448803 2_1:-5823356 Msa0190310:CDS
ACCTCCTGTTATGATGGATA+AGG 0.448958 2_1:+5821081 None:intergenic
GAAAACCATCCTTTAGCTCC+GGG 0.454937 2_1:+5820923 None:intergenic
CAAGAGGAGCTTTCAACTCT+AGG 0.455547 2_1:+5823571 None:intergenic
TTCGAGACAGATCTAGGAAC+AGG 0.457549 2_1:+5823451 None:intergenic
AGGAGGCTAAAAGAGAATGT+AGG 0.458238 2_1:-5821214 Msa0190310:CDS
CGGTGATTACAGTGTCCTTA+GGG 0.459341 2_1:-5823648 Msa0190310:CDS
ACAAGATTCGAGACAGATCT+AGG 0.459559 2_1:+5823445 None:intergenic
AAGAACTAATTGGAAGGTTG+AGG 0.467514 2_1:-5821234 Msa0190310:CDS
AAATCACTCGAAGGAGGGCC+AGG 0.468754 2_1:+5823706 None:intergenic
AACAGGATTGTCAGCTTCCT+CGG 0.472807 2_1:+5823468 None:intergenic
TAACTTGAATGTTCGCTAGT+AGG 0.473520 2_1:+5820668 None:intergenic
GGAGGCTAAAAGAGAATGTA+GGG 0.475433 2_1:-5821213 Msa0190310:CDS
CACATACCCCTCCCCTAAGA+AGG 0.477752 2_1:+5820417 None:intergenic
CAATCTGCGCAGGACTTGAT+TGG 0.481858 2_1:-5823832 Msa0190310:CDS
AGAATATCCTGTAATTTCAA+TGG 0.482490 2_1:+5823796 None:intergenic
CTCTTCTTCACCAAACCTAC+AGG 0.483363 2_1:+5824015 None:intergenic
TTAAAGAAATGTATATTGAT+GGG 0.486154 2_1:+5820392 None:intergenic
CGGTTAGGTTTCTCACGTAT+GGG 0.490310 2_1:-5823616 Msa0190310:CDS
TGTCCTTAGGGCGTGTTCCT+CGG 0.491742 2_1:-5823636 Msa0190310:CDS
TACCATGTGGAACTTCCAAA+AGG 0.493259 2_1:-5823871 Msa0190310:CDS
TTGGATTTGAGATTACAATT+GGG 0.494209 2_1:-5824273 Msa0190310:five_prime_UTR
TAATTTGCAGCGGCTCCTGC+AGG 0.507077 2_1:-5821884 Msa0190310:intron
TTTGGGTATTCAATTCATCA+AGG 0.510805 2_1:-5824481 Msa0190310:five_prime_UTR
TGATGAATTGAATACCCAAA+TGG 0.512292 2_1:+5824484 None:intergenic
TTGTCACAAGATCTTGAAGC+TGG 0.513017 2_1:+5823395 None:intergenic
TAGTCTTGACAGTTGGCAAT+CGG 0.516655 2_1:-5821158 Msa0190310:CDS
GTCAGCAGAGGGAAGGAAGT+GGG 0.517029 2_1:-5823540 Msa0190310:CDS
CCTTCCAATTAGTTCTTCAA+GGG 0.518386 2_1:+5821240 None:intergenic
TGAACAAGAAGTCGTTGCTC+AGG 0.522328 2_1:-5820774 Msa0190310:CDS
AAGTTATGGAACTAGCTAGT+AGG 0.525500 2_1:-5824119 Msa0190310:exon
GCATAGAGTAATGGAGAATG+GGG 0.528940 2_1:-5824097 Msa0190310:CDS
CTAATTCAGGTGATTGCCCA+TGG 0.531991 2_1:-5821334 Msa0190310:intron
TTATCTCTATGCTAAGATCC+AGG 0.532457 2_1:+5824757 None:intergenic
TTGAAGAAAACCAGCTGATA+CGG 0.532620 2_1:+5820597 None:intergenic
GCAGTATTTGGCATGAATGT+TGG 0.535524 2_1:-5820973 Msa0190310:intron
AAAATTTATGAAATGTCACT+TGG 0.536959 2_1:-5820280 Msa0190310:three_prime_UTR
GAATAGATGATACGGCGAGA+GGG 0.537391 2_1:-5820741 Msa0190310:CDS
AAGGAATCGGATGCGGTGGA+AGG 0.539802 2_1:-5823916 Msa0190310:CDS
GAAGTTGTCGCAATCTGCGC+AGG 0.544207 2_1:-5823842 Msa0190310:CDS
TTCTACCCTTCTCATCCTGT+AGG 0.545495 2_1:-5824030 Msa0190310:CDS
ACCGTTAAGAATAGATGATA+CGG 0.548481 2_1:-5820749 Msa0190310:CDS
AGCTAGTAGGCATAGAGTAA+TGG 0.549794 2_1:-5824106 Msa0190310:CDS
CTTATATATTTGATGGTTTG+GGG 0.551017 2_1:-5823990 Msa0190310:CDS
AATTCAAAATCAGGTAGTTG+AGG 0.553840 2_1:+5824675 None:intergenic
GCAAAAGCAACCGTATCAGC+TGG 0.554948 2_1:-5820607 Msa0190310:three_prime_UTR
AATATCTGCCATTAACCAGA+TGG 0.555666 2_1:+5820343 None:intergenic
CCGTCTACATGTGCACAAAA+GGG 0.555714 2_1:+5823754 None:intergenic
GTTGGAGGAGTTCCATGGAC+AGG 0.557158 2_1:-5820955 Msa0190310:CDS
ATACGCGGATAGTTGCTGCT+TGG 0.559859 2_1:-5820831 Msa0190310:CDS
GGTCAGCAGAGGGAAGGAAG+TGG 0.560637 2_1:-5823541 Msa0190310:CDS
TTGTGAATAATTCTATTGGG+TGG 0.560945 2_1:-5824376 Msa0190310:five_prime_UTR
TAACCGAGGAACACGCCCTA+AGG 0.561211 2_1:+5823633 None:intergenic
GCAAATTAATATGTATCTTG+GGG 0.562081 2_1:+5821899 None:intergenic
GAAGATACACTTGTTCTCCA+TGG 0.564062 2_1:+5821317 None:intergenic
ACCATGTGGAACTTCCAAAA+GGG 0.569430 2_1:-5823870 Msa0190310:CDS
TAGATCTGTCTCGAATCTTG+TGG 0.571407 2_1:-5823443 Msa0190310:CDS
ACCAAACCTACAGGATGAGA+AGG 0.574351 2_1:+5824024 None:intergenic
TCTTGTGACAAAGCTTGAGA+TGG 0.575115 2_1:-5823383 Msa0190310:CDS
GACAAAGCTTGAGATGGAGT+TGG 0.575656 2_1:-5823377 Msa0190310:CDS
AGGGGAGGAATACTATTGAA+AGG 0.575915 2_1:+5821101 None:intergenic
AACTAATTGGAAGGTTGAGG+AGG 0.578380 2_1:-5821231 Msa0190310:CDS
ACTATCCGCGTATAAAGAGC+AGG 0.579974 2_1:+5820841 None:intergenic
TACAGGCTAGTCTTGACAGT+TGG 0.581355 2_1:-5821165 Msa0190310:CDS
AATCAGGTAGTTGAGGTTCG+AGG 0.584319 2_1:+5824682 None:intergenic
TTTAGCGGTCAGCAGAGGGA+AGG 0.585474 2_1:-5823547 Msa0190310:CDS
AATAGATGATACGGCGAGAG+GGG 0.590542 2_1:-5820740 Msa0190310:CDS
ATGTAAAATCACTCGAAGGA+GGG 0.594285 2_1:+5823701 None:intergenic
ATGGACAGGTCAAAATTCCC+CGG 0.596504 2_1:-5820941 Msa0190310:CDS
AAGATACACTTGTTCTCCAT+GGG 0.597899 2_1:+5821318 None:intergenic
AAAATGAATAGAAAAGTGAG+AGG 0.598350 2_1:+5824531 None:intergenic
AATGTAAAATCACTCGAAGG+AGG 0.599450 2_1:+5823700 None:intergenic
CTCCTGTTATGATGGATAAG+GGG 0.599828 2_1:+5821083 None:intergenic
AGAAGAAAAGGAATCGGATG+CGG 0.601504 2_1:-5823923 Msa0190310:CDS
CTGCTGACCGCTAAAACAAG+AGG 0.602511 2_1:+5823555 None:intergenic
CCCTTGAAGAACTAATTGGA+AGG 0.603750 2_1:-5821240 Msa0190310:CDS
AATTCCCCGGAGCTAAAGGA+TGG 0.605039 2_1:-5820928 Msa0190310:CDS
GTTTATAGTTAATCGTGTCA+CGG 0.610378 2_1:-5821191 Msa0190310:CDS
TAGAATCTATGCTCATCCAC+AGG 0.612054 2_1:+5824048 None:intergenic
TGAATGTTGGAGGAGTTCCA+TGG 0.612089 2_1:-5820960 Msa0190310:CDS
ACATACCCCTCCCCTAAGAA+GGG 0.614544 2_1:+5820418 None:intergenic
CAGAGAATCTGTGCTTCATG+AGG 0.615523 2_1:+5820499 None:intergenic
AGAAAAGGAATCGGATGCGG+TGG 0.616588 2_1:-5823920 Msa0190310:CDS
TGCATCACCATTAAATCCGA+AGG 0.624501 2_1:+5820713 None:intergenic
GTATTTGGCATGAATGTTGG+AGG 0.628165 2_1:-5820970 Msa0190310:CDS
CGGATGCGGTGGAAGGTCGA+GGG 0.630729 2_1:-5823909 Msa0190310:CDS
CCCTTATCCATCATAACAGG+AGG 0.633175 2_1:-5821082 Msa0190310:intron
AGAATAGATGATACGGCGAG+AGG 0.635472 2_1:-5820742 Msa0190310:CDS
CTGTTATGATGGATAAGGGG+AGG 0.642340 2_1:+5821086 None:intergenic
CTAAATGTAAAATCACTCGA+AGG 0.643804 2_1:+5823697 None:intergenic
ATAGATGATACGGCGAGAGG+GGG 0.644143 2_1:-5820739 Msa0190310:CDS
ATATCCTGTAATTTCAATGG+CGG 0.650645 2_1:+5823799 None:intergenic
ATTGACCATGAATCATTCCG+AGG 0.651428 2_1:-5823485 Msa0190310:CDS
CCAAACCTACAGGATGAGAA+GGG 0.654788 2_1:+5824025 None:intergenic
AGATACATATTAATTTGCAG+CGG 0.659515 2_1:-5821894 Msa0190310:CDS
AAAACCATCCTTTAGCTCCG+GGG 0.687077 2_1:+5820924 None:intergenic
GATGGATGTTGAAAATCCTG+TGG 0.709912 2_1:-5824064 Msa0190310:CDS
CATAGAGTAATGGAGAATGG+GGG 0.717384 2_1:-5824096 Msa0190310:CDS
ATACGTGAGAAACCTAACCG+AGG 0.785911 2_1:+5823619 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTATTTTTAGTTATTT+TGG - chr2_1:5820715-5820734 Msa0190310:exon 10.0%
!!! TTTTTTTGAAAATTCAATTC+AGG - chr2_1:5820607-5820626 Msa0190310:three_prime_UTR 15.0%
!!! TTTTTTGAAAATTCAATTCA+GGG - chr2_1:5820608-5820627 Msa0190310:three_prime_UTR 15.0%
!!! ATTTTTGTGAATAATTCTAT+TGG - chr2_1:5820668-5820687 Msa0190310:three_prime_UTR 15.0%
!!! TTTTTGTGAATAATTCTATT+GGG - chr2_1:5820669-5820688 Msa0190310:three_prime_UTR 15.0%
!! TCAAATCAAAATACATTATA+TGG + chr2_1:5822536-5822555 None:intergenic 15.0%
!! ATATTTGAAGAATTGAATTA+AGG - chr2_1:5823057-5823076 Msa0190310:intron 15.0%
!!! TTTTTTTTTTGCTTAATTGT+AGG - chr2_1:5823084-5823103 Msa0190310:intron 15.0%
!! TTAAAGAAATGTATATTGAT+GGG + chr2_1:5824659-5824678 None:intergenic 15.0%
!!! GACATTTCATAAATTTTTTT+GGG + chr2_1:5824765-5824784 None:intergenic 15.0%
!!! TGACATTTCATAAATTTTTT+TGG + chr2_1:5824766-5824785 None:intergenic 15.0%
!!! CTAACCTATGATTTTAATTT+GGG + chr2_1:5820321-5820340 None:intergenic 20.0%
!!! TCTAACCTATGATTTTAATT+TGG + chr2_1:5820322-5820341 None:intergenic 20.0%
!! TTAAAATCATAGGTTAGATT+TGG - chr2_1:5820324-5820343 Msa0190310:three_prime_UTR 20.0%
!! CAAATAAGGAAAAAATCAAA+GGG + chr2_1:5820470-5820489 None:intergenic 20.0%
!! ACAAATAAGGAAAAAATCAA+AGG + chr2_1:5820471-5820490 None:intergenic 20.0%
!!! TTTATTTTTCTTTCTCCATT+TGG - chr2_1:5820549-5820568 Msa0190310:three_prime_UTR 20.0%
!!! TTATTTTTCTTTCTCCATTT+GGG - chr2_1:5820550-5820569 Msa0190310:three_prime_UTR 20.0%
!!! ATTTTGGATCAATTTGATAT+TGG - chr2_1:5820731-5820750 Msa0190310:CDS 20.0%
!!! TTTTGGATCAATTTGATATT+GGG - chr2_1:5820732-5820751 Msa0190310:CDS 20.0%
!!! CATCTTTTATTTGTGAAATT+TGG - chr2_1:5820756-5820775 Msa0190310:CDS 20.0%
!! GAAAATTTGAATATTGAAGT+TGG - chr2_1:5820828-5820847 Msa0190310:CDS 20.0%
!!! TTTGGGGAATTTTTATAATA+AGG - chr2_1:5821074-5821093 Msa0190310:intron 20.0%
!!! GAATTTTTATAATAAGGAGT+GGG - chr2_1:5821080-5821099 Msa0190310:intron 20.0%
!! TCTTTATCAAAAAGAAGAAA+AGG - chr2_1:5821113-5821132 Msa0190310:CDS 20.0%
!! TTATGGTGAAATGTAAAATA+AGG - chr2_1:5822288-5822307 Msa0190310:intron 20.0%
!! TATGGTGAAATGTAAAATAA+GGG - chr2_1:5822289-5822308 Msa0190310:intron 20.0%
!! AAATATTAAGGTATGAGAAA+TGG + chr2_1:5822444-5822463 None:intergenic 20.0%
!! AAATAATTAGAATGTCCAAA+TGG - chr2_1:5822929-5822948 Msa0190310:intron 20.0%
!! TGCAAATTAATATGTATCTT+GGG + chr2_1:5823153-5823172 None:intergenic 20.0%
!!! CTTTTTTTATACATTCGTTT+TGG - chr2_1:5823197-5823216 Msa0190310:intron 20.0%
!! AATATTAGTGAATCATGAAA+AGG - chr2_1:5823303-5823322 Msa0190310:intron 20.0%
!! ATATTAGTGAATCATGAAAA+GGG - chr2_1:5823304-5823323 Msa0190310:intron 20.0%
!! AATATAAGACAGATTAATCT+GGG - chr2_1:5823486-5823505 Msa0190310:CDS 20.0%
!!! TTTATGTGTTTTATTATGAG+AGG - chr2_1:5823529-5823548 Msa0190310:CDS 20.0%
!! AAAATGATTCTTTATCTTGT+TGG - chr2_1:5823581-5823600 Msa0190310:CDS 20.0%
!! CTAATAAAATTGACATTTAG+TGG - chr2_1:5824492-5824511 Msa0190310:five_prime_UTR 20.0%
!! GTTAAAGAAATGTATATTGA+TGG + chr2_1:5824660-5824679 None:intergenic 20.0%
! GAATCCCAAATTAAAATCAT+AGG - chr2_1:5820314-5820333 Msa0190310:three_prime_UTR 25.0%
! ATGTGACAAAATTCAAAATC+AGG + chr2_1:5820385-5820404 None:intergenic 25.0%
! AAAATGAATAGAAAAGTGAG+AGG + chr2_1:5820520-5820539 None:intergenic 25.0%
! GATTCAAATTGCATAAAGTT+TGG - chr2_1:5820634-5820653 Msa0190310:three_prime_UTR 25.0%
!!! CATAAAGTTTGGTTTTTTAG+AGG - chr2_1:5820645-5820664 Msa0190310:three_prime_UTR 25.0%
!! TTTGGATTTGAGATTACAAT+TGG - chr2_1:5820774-5820793 Msa0190310:CDS 25.0%
!! TTGGATTTGAGATTACAATT+GGG - chr2_1:5820775-5820794 Msa0190310:CDS 25.0%
!! ATATTGAAGTTGGAATTTTC+TGG - chr2_1:5820838-5820857 Msa0190310:CDS 25.0%
! AAGAGAGCTTATATATTTGA+TGG - chr2_1:5821051-5821070 Msa0190310:intron 25.0%
!! AGCTTATATATTTGATGGTT+TGG - chr2_1:5821056-5821075 Msa0190310:intron 25.0%
!! GCTTATATATTTGATGGTTT+GGG - chr2_1:5821057-5821076 Msa0190310:intron 25.0%
!! CTTATATATTTGATGGTTTG+GGG - chr2_1:5821058-5821077 Msa0190310:intron 25.0%
!! GGAATTTTTATAATAAGGAG+TGG - chr2_1:5821079-5821098 Msa0190310:intron 25.0%
! TCAAAAAGAAGAAAAGGAAT+CGG - chr2_1:5821119-5821138 Msa0190310:CDS 25.0%
! AGAATATCCTGTAATTTCAA+TGG + chr2_1:5821255-5821274 None:intergenic 25.0%
!! ATTCTTTCACTTGTTAGTAA+TGG - chr2_1:5821270-5821289 Msa0190310:CDS 25.0%
!! TTCTTTCACTTGTTAGTAAT+GGG - chr2_1:5821271-5821290 Msa0190310:CDS 25.0%
!! TTTCTGTTAAACTGACTTAA+AGG - chr2_1:5821926-5821945 Msa0190310:CDS 25.0%
! GTAATTATCACAAACTTCAA+AGG + chr2_1:5822024-5822043 None:intergenic 25.0%
! TCTCAAAGAAAATAAGTTTG+TGG - chr2_1:5822105-5822124 Msa0190310:intron 25.0%
!! AACTTTTATGTAAGTATGCA+AGG + chr2_1:5822151-5822170 None:intergenic 25.0%
! GCATACTTACATAAAAGTTA+AGG - chr2_1:5822152-5822171 Msa0190310:intron 25.0%
!! TCTAAGCTGAAATTAGATTT+TGG + chr2_1:5822180-5822199 None:intergenic 25.0%
! TTGAGAGAAGATTTATGTTA+TGG - chr2_1:5822271-5822290 Msa0190310:intron 25.0%
!! TAATTTCAAGTCAAACATGT+AGG - chr2_1:5822410-5822429 Msa0190310:intron 25.0%
! CCTATCATGTCTAAATATTA+AGG + chr2_1:5822456-5822475 None:intergenic 25.0%
! CCTTAATATTTAGACATGAT+AGG - chr2_1:5822453-5822472 Msa0190310:intron 25.0%
!!! AAGATTATGTTTTGGACAAA+AGG + chr2_1:5822583-5822602 None:intergenic 25.0%
! AAAAACTACAGGAGAAAAAA+AGG + chr2_1:5822626-5822645 None:intergenic 25.0%
!!! TTTTTTTCTCCTGTAGTTTT+TGG - chr2_1:5822625-5822644 Msa0190310:intron 25.0%
!!! TTTTTTCTCCTGTAGTTTTT+GGG - chr2_1:5822626-5822645 Msa0190310:intron 25.0%
! GTATCTTCTGTAAAATACTA+TGG + chr2_1:5822739-5822758 None:intergenic 25.0%
!! ATTTTACAGAAGATACTGTT+TGG - chr2_1:5822743-5822762 Msa0190310:intron 25.0%
!! TTTTACAGAAGATACTGTTT+GGG - chr2_1:5822744-5822763 Msa0190310:intron 25.0%
! AAAGAATTATAATGTCCACA+TGG - chr2_1:5822857-5822876 Msa0190310:intron 25.0%
! TCTTCAAATATTGTACATCA+AGG + chr2_1:5823048-5823067 None:intergenic 25.0%
!!! TTTTTTTGCTTAATTGTAGG+TGG - chr2_1:5823087-5823106 Msa0190310:intron 25.0%
! GCAAATTAATATGTATCTTG+GGG + chr2_1:5823152-5823171 None:intergenic 25.0%
! CTGCAAATTAATATGTATCT+TGG + chr2_1:5823154-5823173 None:intergenic 25.0%
!!! AGATACATATTAATTTGCAG+CGG - chr2_1:5823154-5823173 Msa0190310:intron 25.0%
! GTGAAAGTTAATTAAAATCG+AGG + chr2_1:5823266-5823285 None:intergenic 25.0%
! ATACTCAATAAAGATGTCTT+TGG - chr2_1:5823458-5823477 Msa0190310:CDS 25.0%
! CAATATAAGACAGATTAATC+TGG - chr2_1:5823485-5823504 Msa0190310:CDS 25.0%
! AAATACGAGAACGAATATAA+TGG + chr2_1:5823640-5823659 None:intergenic 25.0%
!!! CGTATTTATCAAGTTTTGTA+TGG - chr2_1:5823653-5823672 Msa0190310:CDS 25.0%
!!! TACTGTATGGTTTTGATTTT+TGG - chr2_1:5824043-5824062 Msa0190310:CDS 25.0%
!! ATTCAAGTTACACTATACTT+TGG - chr2_1:5824393-5824412 Msa0190310:five_prime_UTR 25.0%
!! TTCAAGTTACACTATACTTT+GGG - chr2_1:5824394-5824413 Msa0190310:five_prime_UTR 25.0%
! GAAAGAATAAGCAAAAATCT+TGG + chr2_1:5824603-5824622 None:intergenic 25.0%
!!! TTTCATTTTTTCCCTTCTTA+GGG - chr2_1:5824619-5824638 Msa0190310:five_prime_UTR 25.0%
!!! TTTTTTTTCCATCTGGTTAA+TGG - chr2_1:5824697-5824716 Msa0190310:five_prime_UTR 25.0%
AATTCAAAATCAGGTAGTTG+AGG + chr2_1:5820376-5820395 None:intergenic 30.0%
AAGGAAAAAATCAAAGGGTA+GGG + chr2_1:5820465-5820484 None:intergenic 30.0%
TAAGGAAAAAATCAAAGGGT+AGG + chr2_1:5820466-5820485 None:intergenic 30.0%
TGATGAATTGAATACCCAAA+TGG + chr2_1:5820567-5820586 None:intergenic 30.0%
TTTGGGTATTCAATTCATCA+AGG - chr2_1:5820567-5820586 Msa0190310:three_prime_UTR 30.0%
TTGTGAATAATTCTATTGGG+TGG - chr2_1:5820672-5820691 Msa0190310:three_prime_UTR 30.0%
! GGTGGTTTGAATATTTTTCT+GGG - chr2_1:5820690-5820709 Msa0190310:three_prime_UTR 30.0%
!! ACAATTGGGTTAGTATAGTA+TGG - chr2_1:5820789-5820808 Msa0190310:CDS 30.0%
ACATATTGTGCATTAGTGTT+AGG - chr2_1:5820881-5820900 Msa0190310:CDS 30.0%
ATATCCTGTAATTTCAATGG+CGG + chr2_1:5821252-5821271 None:intergenic 30.0%
CTAAATGTAAAATCACTCGA+AGG + chr2_1:5821354-5821373 None:intergenic 30.0%
TGCTAGAGTTACTGAAAATT+CGG - chr2_1:5821380-5821399 Msa0190310:intron 30.0%
TATGGGTGAATCTTTACTTT+CGG - chr2_1:5821449-5821468 Msa0190310:intron 30.0%
!! TTAGAGAATATAAGAGTGCT+GGG + chr2_1:5821754-5821773 None:intergenic 30.0%
ATAAGCCATTTAACTAGGAA+CGG + chr2_1:5821812-5821831 None:intergenic 30.0%
TTCCTAGTTAAATGGCTTAT+AGG - chr2_1:5821812-5821831 Msa0190310:intron 30.0%
ATCCTATAAGCCATTTAACT+AGG + chr2_1:5821817-5821836 None:intergenic 30.0%
AAATTTCAAGCAATCAAGAG+CGG + chr2_1:5821899-5821918 None:intergenic 30.0%
AGTCAGTTTAACAGAAACTA+AGG + chr2_1:5821923-5821942 None:intergenic 30.0%
!!! CGTACTTTGTTGTCTTTTTT+TGG - chr2_1:5821969-5821988 Msa0190310:intron 30.0%
!!! CTTTGTTGTCTTTTTTTGGT+AGG - chr2_1:5821973-5821992 Msa0190310:intron 30.0%
AGGAATATTGAAGTTGTCAT+AGG - chr2_1:5821993-5822012 Msa0190310:intron 30.0%
GGAATATTGAAGTTGTCATA+GGG - chr2_1:5821994-5822013 Msa0190310:intron 30.0%
GTTAGAAGCTAATCTAAACA+GGG + chr2_1:5822074-5822093 None:intergenic 30.0%
AGTTAGAAGCTAATCTAAAC+AGG + chr2_1:5822075-5822094 None:intergenic 30.0%
GTTAGTGAAATTTAAGGGAT+GGG - chr2_1:5822315-5822334 Msa0190310:intron 30.0%
TTAGTGAAATTTAAGGGATG+GGG - chr2_1:5822316-5822335 Msa0190310:intron 30.0%
TTGAAATTAGATGAAACTGG+AGG + chr2_1:5822399-5822418 None:intergenic 30.0%
GACTTGAAATTAGATGAAAC+TGG + chr2_1:5822402-5822421 None:intergenic 30.0%
AGGTAATGTCTATGTGATAA+TGG - chr2_1:5822473-5822492 Msa0190310:intron 30.0%
! ATTATATGGACTATGATGCA+TGG + chr2_1:5822522-5822541 None:intergenic 30.0%
! GCAAGATCAAGATTATGTTT+TGG + chr2_1:5822591-5822610 None:intergenic 30.0%
! TTTTTCTCCTGTAGTTTTTG+GGG - chr2_1:5822627-5822646 Msa0190310:intron 30.0%
TTAGTGGTCAAAACATTTGA+AGG + chr2_1:5822691-5822710 None:intergenic 30.0%
GTAAAATACTATGGTCTACA+AGG + chr2_1:5822730-5822749 None:intergenic 30.0%
!!! TAATTTTGGCTATTAGTCGA+GGG + chr2_1:5822806-5822825 None:intergenic 30.0%
TCGACTAATAGCCAAAATTA+CGG - chr2_1:5822806-5822825 Msa0190310:intron 30.0%
! AAGAATTCTTCGCATAGTTT+TGG + chr2_1:5822892-5822911 None:intergenic 30.0%
!! TAGTTTTGCAATCAAGCATA+AGG - chr2_1:5823388-5823407 Msa0190310:CDS 30.0%
! CATTGATTACACTATGATGA+TGG + chr2_1:5823432-5823451 None:intergenic 30.0%
CATCATCATAGTGTAATCAA+TGG - chr2_1:5823430-5823449 Msa0190310:CDS 30.0%
!! TGTGTTTTATTATGAGAGGT+TGG - chr2_1:5823533-5823552 Msa0190310:CDS 30.0%
! GATAAAGAATCATTTTCCAG+TGG + chr2_1:5823577-5823596 None:intergenic 30.0%
TGATTCTTTATCTTGTTGGA+TGG - chr2_1:5823585-5823604 Msa0190310:CDS 30.0%
GTTGGATGGAAAAATAAACA+AGG - chr2_1:5823599-5823618 Msa0190310:CDS 30.0%
CACCTTAAATTCTCTAATTC+AGG - chr2_1:5823701-5823720 Msa0190310:CDS 30.0%
CACCTGAATTAGAGAATTTA+AGG + chr2_1:5823706-5823725 None:intergenic 30.0%
AAAAATCCTCTTCGAAAAGA+TGG - chr2_1:5823763-5823782 Msa0190310:CDS 30.0%
GTTTATAGTTAATCGTGTCA+CGG - chr2_1:5823857-5823876 Msa0190310:CDS 30.0%
ATGAGAGATAGTACAGTTTA+CGG + chr2_1:5823926-5823945 None:intergenic 30.0%
ACCGTTAAGAATAGATGATA+CGG - chr2_1:5824299-5824318 Msa0190310:five_prime_UTR 30.0%
!!! CTTTCATTTTTTCCCTTCTT+AGG - chr2_1:5824618-5824637 Msa0190310:five_prime_UTR 30.0%
!!! TTCATTTTTTCCCTTCTTAG+GGG - chr2_1:5824620-5824639 Msa0190310:five_prime_UTR 30.0%
TTATCTCTATGCTAAGATCC+AGG + chr2_1:5820294-5820313 None:intergenic 35.0%
GAGCAAAAACGTCACAAATA+AGG + chr2_1:5820484-5820503 None:intergenic 35.0%
! GGGTGGTTTGAATATTTTTC+TGG - chr2_1:5820689-5820708 Msa0190310:three_prime_UTR 35.0%
!!! TAGTGTTAGGAGAGTGTTTT+TGG - chr2_1:5820894-5820913 Msa0190310:CDS 35.0%
!!! AGTGTTAGGAGAGTGTTTTT+GGG - chr2_1:5820895-5820914 Msa0190310:CDS 35.0%
! GGGGTAATTTGTGAAAGTTA+TGG - chr2_1:5820915-5820934 Msa0190310:CDS 35.0%
AAGTTATGGAACTAGCTAGT+AGG - chr2_1:5820929-5820948 Msa0190310:CDS 35.0%
TTATAATAAGGAGTGGGATC+TGG - chr2_1:5821086-5821105 Msa0190310:CDS 35.0%
ATGTAAAATCACTCGAAGGA+GGG + chr2_1:5821350-5821369 None:intergenic 35.0%
AATGTAAAATCACTCGAAGG+AGG + chr2_1:5821351-5821370 None:intergenic 35.0%
!! TAGAGAATATAAGAGTGCTG+GGG + chr2_1:5821753-5821772 None:intergenic 35.0%
! GTTAGAGAATATAAGAGTGC+TGG + chr2_1:5821755-5821774 None:intergenic 35.0%
GTGAAATGTAAAATAAGGGC+AGG - chr2_1:5822293-5822312 Msa0190310:intron 35.0%
GGCAGGTTAGTGAAATTTAA+GGG - chr2_1:5822310-5822329 Msa0190310:intron 35.0%
GGTTAGTGAAATTTAAGGGA+TGG - chr2_1:5822314-5822333 Msa0190310:intron 35.0%
TATGATGCATGGATAAGTAC+AGG + chr2_1:5822511-5822530 None:intergenic 35.0%
GGAGAAAAAAAGGAGATACA+AGG + chr2_1:5822616-5822635 None:intergenic 35.0%
!!! GTAATTTTGGCTATTAGTCG+AGG + chr2_1:5822807-5822826 None:intergenic 35.0%
CGACTAATAGCCAAAATTAC+GGG - chr2_1:5822807-5822826 Msa0190310:intron 35.0%
! TTTTATAAACAAGCCGTACC+AGG + chr2_1:5822840-5822859 None:intergenic 35.0%
! CGTAAGACTTCAAAGTTTTC+TGG - chr2_1:5822972-5822991 Msa0190310:intron 35.0%
!!! GCAAGGTTTTTTGTTCATCT+TGG - chr2_1:5822994-5823013 Msa0190310:intron 35.0%
!!! AGGTTTTTTGTTCATCTTGG+TGG - chr2_1:5822997-5823016 Msa0190310:intron 35.0%
! AAAAGTATAGTATCACCTGC+AGG + chr2_1:5823182-5823201 None:intergenic 35.0%
!!! TAGTTTTATAGACCCTTGAG+AGG - chr2_1:5823222-5823241 Msa0190310:intron 35.0%
AAGATACACTTGTTCTCCAT+GGG + chr2_1:5823733-5823752 None:intergenic 35.0%
AACTCCCTTGAAGAACTAAT+TGG - chr2_1:5823804-5823823 Msa0190310:CDS 35.0%
! CCTTCCAATTAGTTCTTCAA+GGG + chr2_1:5823811-5823830 None:intergenic 35.0%
! ACCTTCCAATTAGTTCTTCA+AGG + chr2_1:5823812-5823831 None:intergenic 35.0%
AAGAACTAATTGGAAGGTTG+AGG - chr2_1:5823814-5823833 Msa0190310:CDS 35.0%
TTTCTAACCTCCTGTTATGA+TGG + chr2_1:5823976-5823995 None:intergenic 35.0%
ACATGCATTGCAATACTGTA+TGG - chr2_1:5824030-5824049 Msa0190310:CDS 35.0%
! TTTTTCCTGCTCTTTATACG+CGG - chr2_1:5824202-5824221 Msa0190310:five_prime_UTR 35.0%
AGAAAACTCTTGGAAGAAAC+TGG - chr2_1:5824247-5824266 Msa0190310:five_prime_UTR 35.0%
GCCGTATCATCTATTCTTAA+CGG + chr2_1:5824303-5824322 None:intergenic 35.0%
TAACTTGAATGTTCGCTAGT+AGG + chr2_1:5824383-5824402 None:intergenic 35.0%
TTGAAGAAAACCAGCTGATA+CGG + chr2_1:5824454-5824473 None:intergenic 35.0%
!!! TATCAGCTGGTTTTCTTCAA+TGG - chr2_1:5824454-5824473 Msa0190310:five_prime_UTR 35.0%
!!! CAGTGTCTTTTTTTTCCATC+TGG - chr2_1:5824690-5824709 Msa0190310:five_prime_UTR 35.0%
AATATCTGCCATTAACCAGA+TGG + chr2_1:5824708-5824727 None:intergenic 35.0%
! GTTCGAGGAAACTTCGTTTT+CGG + chr2_1:5820354-5820373 None:intergenic 40.0%
GAAAAGTGAGAGGTTGAATC+TGG + chr2_1:5820510-5820529 None:intergenic 40.0%
!!! GTGTTAGGAGAGTGTTTTTG+GGG - chr2_1:5820896-5820915 Msa0190310:CDS 40.0%
AGCTAGTAGGCATAGAGTAA+TGG - chr2_1:5820942-5820961 Msa0190310:CDS 40.0%
! AGGCATAGAGTAATGGAGAA+TGG - chr2_1:5820949-5820968 Msa0190310:CDS 40.0%
! GGCATAGAGTAATGGAGAAT+GGG - chr2_1:5820950-5820969 Msa0190310:CDS 40.0%
! GCATAGAGTAATGGAGAATG+GGG - chr2_1:5820951-5820970 Msa0190310:CDS 40.0%
! CATAGAGTAATGGAGAATGG+GGG - chr2_1:5820952-5820971 Msa0190310:CDS 40.0%
GATGGATGTTGAAAATCCTG+TGG - chr2_1:5820984-5821003 Msa0190310:intron 40.0%
TAGAATCTATGCTCATCCAC+AGG + chr2_1:5821003-5821022 None:intergenic 40.0%
AGAAGAAAAGGAATCGGATG+CGG - chr2_1:5821125-5821144 Msa0190310:CDS 40.0%
! TGAGTTTTCTTGGTACCATG+TGG - chr2_1:5821164-5821183 Msa0190310:CDS 40.0%
TACCATGTGGAACTTCCAAA+AGG - chr2_1:5821177-5821196 Msa0190310:CDS 40.0%
ACCATGTGGAACTTCCAAAA+GGG - chr2_1:5821178-5821197 Msa0190310:CDS 40.0%
! GACAACTTCTGATTCCCTTT+TGG + chr2_1:5821195-5821214 None:intergenic 40.0%
ATGTCCGCCATTGAAATTAC+AGG - chr2_1:5821245-5821264 Msa0190310:CDS 40.0%
!!! GAAAGCTCCTCTTGTTTTAG+CGG - chr2_1:5821486-5821505 Msa0190310:intron 40.0%
ATTGACCATGAATCATTCCG+AGG - chr2_1:5821563-5821582 Msa0190310:intron 40.0%
ACAAGATTCGAGACAGATCT+AGG + chr2_1:5821606-5821625 None:intergenic 40.0%
TAGATCTGTCTCGAATCTTG+TGG - chr2_1:5821605-5821624 Msa0190310:intron 40.0%
TTGTCACAAGATCTTGAAGC+TGG + chr2_1:5821656-5821675 None:intergenic 40.0%
TCTTGTGACAAAGCTTGAGA+TGG - chr2_1:5821665-5821684 Msa0190310:intron 40.0%
TTGCACCGTTCCTAGTTAAA+TGG - chr2_1:5821804-5821823 Msa0190310:intron 40.0%
AGCTAATCTAAACAGGGTCT+TGG + chr2_1:5822068-5822087 None:intergenic 40.0%
GGGCAGGTTAGTGAAATTTA+AGG - chr2_1:5822309-5822328 Msa0190310:intron 40.0%
TACAGAAGATACTGTTTGGG+TGG - chr2_1:5822747-5822766 Msa0190310:intron 40.0%
! AGGAGTTCTTCCCGTAATTT+TGG + chr2_1:5822820-5822839 None:intergenic 40.0%
AAAATTACGGGAAGAACTCC+TGG - chr2_1:5822819-5822838 Msa0190310:intron 40.0%
CTACTGCATCAAATGCCATT+TGG + chr2_1:5822947-5822966 None:intergenic 40.0%
!! GACTTCAAAGTTTTCTGGCA+AGG - chr2_1:5822977-5822996 Msa0190310:intron 40.0%
! ACTTCTGTTTCTCCTCTCAA+GGG + chr2_1:5823237-5823256 None:intergenic 40.0%
GCAATCAAGCATAAGGATTG+AGG - chr2_1:5823395-5823414 Msa0190310:CDS 40.0%
AAGCATAAGGATTGAGGTCT+TGG - chr2_1:5823401-5823420 Msa0190310:CDS 40.0%
AGCATAAGGATTGAGGTCTT+GGG - chr2_1:5823402-5823421 Msa0190310:CDS 40.0%
ACAGATTAATCTGGGAGAGA+CGG - chr2_1:5823494-5823513 Msa0190310:CDS 40.0%
TAAGGTGATGCAACACGAAA+AGG + chr2_1:5823688-5823707 None:intergenic 40.0%
GAAGATACACTTGTTCTCCA+TGG + chr2_1:5823734-5823753 None:intergenic 40.0%
! CGATAACCATCTTTTCGAAG+AGG + chr2_1:5823772-5823791 None:intergenic 40.0%
CCCTTGAAGAACTAATTGGA+AGG - chr2_1:5823808-5823827 Msa0190310:CDS 40.0%
AACTAATTGGAAGGTTGAGG+AGG - chr2_1:5823817-5823836 Msa0190310:CDS 40.0%
AGGAGGCTAAAAGAGAATGT+AGG - chr2_1:5823834-5823853 Msa0190310:CDS 40.0%
GGAGGCTAAAAGAGAATGTA+GGG - chr2_1:5823835-5823854 Msa0190310:CDS 40.0%
! TAGTCTTGACAGTTGGCAAT+CGG - chr2_1:5823890-5823909 Msa0190310:CDS 40.0%
AGGGGAGGAATACTATTGAA+AGG + chr2_1:5823950-5823969 None:intergenic 40.0%
!! CTCCTGTTATGATGGATAAG+GGG + chr2_1:5823968-5823987 None:intergenic 40.0%
!! CCTCCTGTTATGATGGATAA+GGG + chr2_1:5823969-5823988 None:intergenic 40.0%
!! ACCTCCTGTTATGATGGATA+AGG + chr2_1:5823970-5823989 None:intergenic 40.0%
TGGACTCTGATTGCAGTATT+TGG - chr2_1:5824063-5824082 Msa0190310:CDS 40.0%
GCAGTATTTGGCATGAATGT+TGG - chr2_1:5824075-5824094 Msa0190310:CDS 40.0%
GTATTTGGCATGAATGTTGG+AGG - chr2_1:5824078-5824097 Msa0190310:CDS 40.0%
GCGTATAAAGAGCAGGAAAA+AGG + chr2_1:5824203-5824222 None:intergenic 40.0%
TGGCGAGAAAAGAAAACTCT+TGG - chr2_1:5824237-5824256 Msa0190310:five_prime_UTR 40.0%
TGCATCACCATTAAATCCGA+AGG + chr2_1:5824338-5824357 None:intergenic 40.0%
!!! ATTTTTTCCCTTCTTAGGGG+AGG - chr2_1:5824623-5824642 Msa0190310:five_prime_UTR 40.0%
!!! TTTTTTCCCTTCTTAGGGGA+GGG - chr2_1:5824624-5824643 Msa0190310:five_prime_UTR 40.0%
AATCAGGTAGTTGAGGTTCG+AGG + chr2_1:5820369-5820388 None:intergenic 45.0%
TTCTACCCTTCTCATCCTGT+AGG - chr2_1:5821018-5821037 Msa0190310:intron 45.0%
CCAAACCTACAGGATGAGAA+GGG + chr2_1:5821026-5821045 None:intergenic 45.0%
ACCAAACCTACAGGATGAGA+AGG + chr2_1:5821027-5821046 None:intergenic 45.0%
CTCTTCTTCACCAAACCTAC+AGG + chr2_1:5821036-5821055 None:intergenic 45.0%
! GTCGAGGGAATGAGTTTTCT+TGG - chr2_1:5821154-5821173 Msa0190310:CDS 45.0%
!! TCCCTTTTGGAAGTTCCACA+TGG + chr2_1:5821182-5821201 None:intergenic 45.0%
CCGTCTACATGTGCACAAAA+GGG + chr2_1:5821297-5821316 None:intergenic 45.0%
! CCCTTTTGTGCACATGTAGA+CGG - chr2_1:5821294-5821313 Msa0190310:CDS 45.0%
ACCGTCTACATGTGCACAAA+AGG + chr2_1:5821298-5821317 None:intergenic 45.0%
! GTTTTTCGCGTCAATTCACC+TGG - chr2_1:5821324-5821343 Msa0190310:CDS 45.0%
TCGGTGATTACAGTGTCCTT+AGG - chr2_1:5821399-5821418 Msa0190310:intron 45.0%
CGGTGATTACAGTGTCCTTA+GGG - chr2_1:5821400-5821419 Msa0190310:intron 45.0%
ATACGTGAGAAACCTAACCG+AGG + chr2_1:5821432-5821451 None:intergenic 45.0%
TCGGTTAGGTTTCTCACGTA+TGG - chr2_1:5821431-5821450 Msa0190310:intron 45.0%
CGGTTAGGTTTCTCACGTAT+GGG - chr2_1:5821432-5821451 Msa0190310:intron 45.0%
CAAGAGGAGCTTTCAACTCT+AGG + chr2_1:5821480-5821499 None:intergenic 45.0%
!!! TTGTTTTAGCGGTCAGCAGA+GGG - chr2_1:5821497-5821516 Msa0190310:intron 45.0%
AGGAAGTGGGACTGTGATTA+AGG - chr2_1:5821521-5821540 Msa0190310:intron 45.0%
AGCTTCCTCGGAATGATTCA+TGG + chr2_1:5821571-5821590 None:intergenic 45.0%
AACAGGATTGTCAGCTTCCT+CGG + chr2_1:5821583-5821602 None:intergenic 45.0%
TTCGAGACAGATCTAGGAAC+AGG + chr2_1:5821600-5821619 None:intergenic 45.0%
GACAAAGCTTGAGATGGAGT+TGG - chr2_1:5821671-5821690 Msa0190310:intron 45.0%
GTCGAGCTTGATCTGGATAA+AGG - chr2_1:5821699-5821718 Msa0190310:intron 45.0%
! AGGGTTGAAAGAGTGTACAG+TGG + chr2_1:5821730-5821749 None:intergenic 45.0%
!! GAATATAAGAGTGCTGGGGA+GGG + chr2_1:5821749-5821768 None:intergenic 45.0%
!! AGAATATAAGAGTGCTGGGG+AGG + chr2_1:5821750-5821769 None:intergenic 45.0%
TTGACCACTAATATGCAGCG+AGG - chr2_1:5822700-5822719 Msa0190310:intron 45.0%
TTTGGCTATTAGTCGAGGGA+AGG + chr2_1:5822802-5822821 None:intergenic 45.0%
!!! TTTTGGCTTGTGATGCCATG+TGG + chr2_1:5822875-5822894 None:intergenic 45.0%
! GACTTCTGTTTCTCCTCTCA+AGG + chr2_1:5823238-5823257 None:intergenic 45.0%
GCATAAGGATTGAGGTCTTG+GGG - chr2_1:5823403-5823422 Msa0190310:CDS 45.0%
CATAAGGATTGAGGTCTTGG+GGG - chr2_1:5823404-5823423 Msa0190310:CDS 45.0%
TCTGGGAGAGACGGTATAAA+AGG - chr2_1:5823503-5823522 Msa0190310:CDS 45.0%
AGCTTACGCAAAATTGCCAC+TGG - chr2_1:5823558-5823577 Msa0190310:CDS 45.0%
CTAATTCAGGTGATTGCCCA+TGG - chr2_1:5823714-5823733 Msa0190310:CDS 45.0%
TAATCGTGTCACGGCAATAC+AGG - chr2_1:5823866-5823885 Msa0190310:CDS 45.0%
!! TACAGGCTAGTCTTGACAGT+TGG - chr2_1:5823883-5823902 Msa0190310:CDS 45.0%
!! CTGTTATGATGGATAAGGGG+AGG + chr2_1:5823965-5823984 None:intergenic 45.0%
CTCCCCTTATCCATCATAAC+AGG - chr2_1:5823963-5823982 Msa0190310:CDS 45.0%
CCCTTATCCATCATAACAGG+AGG - chr2_1:5823966-5823985 Msa0190310:CDS 45.0%
TGAATGTTGGAGGAGTTCCA+TGG - chr2_1:5824088-5824107 Msa0190310:CDS 45.0%
ATGGACAGGTCAAAATTCCC+CGG - chr2_1:5824107-5824126 Msa0190310:CDS 45.0%
TCAAAATTCCCCGGAGCTAA+AGG - chr2_1:5824116-5824135 Msa0190310:CDS 45.0%
! AAAACCATCCTTTAGCTCCG+GGG + chr2_1:5824127-5824146 None:intergenic 45.0%
! GAAAACCATCCTTTAGCTCC+GGG + chr2_1:5824128-5824147 None:intergenic 45.0%
! CGAAAACCATCCTTTAGCTC+CGG + chr2_1:5824129-5824148 None:intergenic 45.0%
! CGGAGCTAAAGGATGGTTTT+CGG - chr2_1:5824127-5824146 Msa0190310:exon 45.0%
ACTATCCGCGTATAAAGAGC+AGG + chr2_1:5824210-5824229 None:intergenic 45.0%
TGAACAAGAAGTCGTTGCTC+AGG - chr2_1:5824274-5824293 Msa0190310:five_prime_UTR 45.0%
AGAATAGATGATACGGCGAG+AGG - chr2_1:5824306-5824325 Msa0190310:five_prime_UTR 45.0%
GAATAGATGATACGGCGAGA+GGG - chr2_1:5824307-5824326 Msa0190310:five_prime_UTR 45.0%
AATAGATGATACGGCGAGAG+GGG - chr2_1:5824308-5824327 Msa0190310:five_prime_UTR 45.0%
GGGGTTACCTTCGGATTTAA+TGG - chr2_1:5824328-5824347 Msa0190310:five_prime_UTR 45.0%
! GAGGATTCGATTTGTGCTTC+TGG + chr2_1:5824533-5824552 None:intergenic 45.0%
CAGAGAATCTGTGCTTCATG+AGG + chr2_1:5824552-5824571 None:intergenic 45.0%
CTCATGAAGCACAGATTCTC+TGG - chr2_1:5824550-5824569 Msa0190310:five_prime_UTR 45.0%
! TTTTTCCCTTCTTAGGGGAG+GGG - chr2_1:5824625-5824644 Msa0190310:five_prime_UTR 45.0%
CCCTTCTCATCCTGTAGGTT+TGG - chr2_1:5821023-5821042 Msa0190310:intron 50.0%
AGAAAAGGAATCGGATGCGG+TGG - chr2_1:5821128-5821147 Msa0190310:CDS 50.0%
CAATCTGCGCAGGACTTGAT+TGG - chr2_1:5821216-5821235 Msa0190310:CDS 50.0%
CTGCTGACCGCTAAAACAAG+AGG + chr2_1:5821496-5821515 None:intergenic 50.0%
!!! CTTGTTTTAGCGGTCAGCAG+AGG - chr2_1:5821496-5821515 Msa0190310:intron 50.0%
!!! CCTGTAGTTTTTGGGGTCCT+CGG - chr2_1:5822634-5822653 Msa0190310:intron 50.0%
CCTTCCTCGCTGCATATTAG+TGG + chr2_1:5822707-5822726 None:intergenic 50.0%
CCACTAATATGCAGCGAGGA+AGG - chr2_1:5822704-5822723 Msa0190310:intron 50.0%
TACGGGAAGAACTCCTGGTA+CGG - chr2_1:5822824-5822843 Msa0190310:intron 50.0%
!! GGGGAATTTTGACCTGTCCA+TGG + chr2_1:5824108-5824127 None:intergenic 50.0%
AATTCCCCGGAGCTAAAGGA+TGG - chr2_1:5824120-5824139 Msa0190310:exon 50.0%
ATACGCGGATAGTTGCTGCT+TGG - chr2_1:5824217-5824236 Msa0190310:five_prime_UTR 50.0%
ATAGATGATACGGCGAGAGG+GGG - chr2_1:5824309-5824328 Msa0190310:five_prime_UTR 50.0%
GCAAAAGCAACCGTATCAGC+TGG - chr2_1:5824441-5824460 Msa0190310:five_prime_UTR 50.0%
ACATACCCCTCCCCTAAGAA+GGG + chr2_1:5824633-5824652 None:intergenic 50.0%
! TTCTTAGGGGAGGGGTATGT+GGG - chr2_1:5824633-5824652 Msa0190310:five_prime_UTR 50.0%
AATGGAGAATGGGGGAGCTG+AGG - chr2_1:5820960-5820979 Msa0190310:CDS 55.0%
AAGGAATCGGATGCGGTGGA+AGG - chr2_1:5821132-5821151 Msa0190310:CDS 55.0%
GAAGTTGTCGCAATCTGCGC+AGG - chr2_1:5821206-5821225 Msa0190310:CDS 55.0%
AAATCACTCGAAGGAGGGCC+AGG + chr2_1:5821345-5821364 None:intergenic 55.0%
TGTCCTTAGGGCGTGTTCCT+CGG - chr2_1:5821412-5821431 Msa0190310:intron 55.0%
TAACCGAGGAACACGCCCTA+AGG + chr2_1:5821418-5821437 None:intergenic 55.0%
TTAGGGCGTGTTCCTCGGTT+AGG - chr2_1:5821417-5821436 Msa0190310:intron 55.0%
TTTAGCGGTCAGCAGAGGGA+AGG - chr2_1:5821501-5821520 Msa0190310:intron 55.0%
GTCAGCAGAGGGAAGGAAGT+GGG - chr2_1:5821508-5821527 Msa0190310:intron 55.0%
GGACTCTGTCGAGCTTGATC+TGG - chr2_1:5821692-5821711 Msa0190310:intron 55.0%
CCGAGGACCCCAAAAACTAC+AGG + chr2_1:5822637-5822656 None:intergenic 55.0%
! TAATTTGCAGCGGCTCCTGC+AGG - chr2_1:5823164-5823183 Msa0190310:intron 55.0%
GTTGGAGGAGTTCCATGGAC+AGG - chr2_1:5824093-5824112 Msa0190310:CDS 55.0%
CACATACCCCTCCCCTAAGA+AGG + chr2_1:5824634-5824653 None:intergenic 55.0%
! CTTCTTAGGGGAGGGGTATG+TGG - chr2_1:5824632-5824651 Msa0190310:five_prime_UTR 55.0%
GAATGGGGGAGCTGAGGAGA+TGG - chr2_1:5820966-5820985 Msa0190310:CDS 60.0%
GGTCAGCAGAGGGAAGGAAG+TGG - chr2_1:5821507-5821526 Msa0190310:intron 60.0%
TGGGGTCCTCGGATGCATAC+TGG - chr2_1:5822645-5822664 Msa0190310:intron 60.0%
GGGGTCCTCGGATGCATACT+GGG - chr2_1:5822646-5822665 Msa0190310:intron 60.0%
GTCCTCGGATGCATACTGGG+TGG - chr2_1:5822649-5822668 Msa0190310:intron 60.0%
CACCACCCAGTATGCATCCG+AGG + chr2_1:5822654-5822673 None:intergenic 60.0%
CTCGGATGCATACTGGGTGG+TGG - chr2_1:5822652-5822671 Msa0190310:intron 60.0%
TCGGATGCGGTGGAAGGTCG+AGG - chr2_1:5821138-5821157 Msa0190310:CDS 65.0%
CGGATGCGGTGGAAGGTCGA+GGG - chr2_1:5821139-5821158 Msa0190310:CDS 65.0%
CGGCGAGAGGGGGTTACCTT+CGG - chr2_1:5824319-5824338 Msa0190310:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 5820280 5824790 5820280 ID=Msa0190310;Name=Msa0190310
chr2_1 mRNA 5820280 5824790 5820280 ID=Msa0190310-mRNA-1;Parent=Msa0190310;Name=Msa0190310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=654|1|1|1|1|1|4|443|466
chr2_1 exon 5820280 5820991 5820280 ID=Msa0190310-mRNA-1:exon:2645;Parent=Msa0190310-mRNA-1
chr2_1 exon 5821083 5821347 5821083 ID=Msa0190310-mRNA-1:exon:2644;Parent=Msa0190310-mRNA-1
chr2_1 exon 5821885 5821964 5821885 ID=Msa0190310-mRNA-1:exon:2643;Parent=Msa0190310-mRNA-1
chr2_1 exon 5823350 5824790 5823350 ID=Msa0190310-mRNA-1:exon:2642;Parent=Msa0190310-mRNA-1
chr2_1 five_prime_UTR 5824137 5824790 5824137 ID=Msa0190310-mRNA-1:five_prime_utr;Parent=Msa0190310-mRNA-1
chr2_1 CDS 5823350 5824136 5823350 ID=Msa0190310-mRNA-1:cds;Parent=Msa0190310-mRNA-1
chr2_1 CDS 5821885 5821964 5821885 ID=Msa0190310-mRNA-1:cds;Parent=Msa0190310-mRNA-1
chr2_1 CDS 5821083 5821347 5821083 ID=Msa0190310-mRNA-1:cds;Parent=Msa0190310-mRNA-1
chr2_1 CDS 5820723 5820991 5820723 ID=Msa0190310-mRNA-1:cds;Parent=Msa0190310-mRNA-1
chr2_1 three_prime_UTR 5820280 5820722 5820280 ID=Msa0190310-mRNA-1:three_prime_utr;Parent=Msa0190310-mRNA-1
Gene Sequence

>Msa0190310

ATGGAACTAGCTAGTAGGCATAGAGTAATGGAGAATGGGGGAGCTGAGGAGATGGATGTTGAAAATCCTGTGGATGAGCATAGATTCTACCCTTCTCATCCTGTAGGTTTGGTGAAGAAGAGAGCTTATATATTTGATGGTTTGGGGAATTTTTATAATAAGGAGTGGGATCTGGCTGATCTTTATCAAAAAGAAGAAAAGGAATCGGATGCGGTGGAAGGTCGAGGGAATGAGTTTTCTTGGTACCATGTGGAACTTCCAAAAGGGAATCAGAAGTTGTCGCAATCTGCGCAGGACTTGATTGGTGTTTTATGTCCGCCATTGAAATTACAGGATATTCTTTCACTTGTTAGTAATGGGCCCTTTTGTGCACATGTAGACGGTGCACTTGTTTTTCGCGTCAATTCACCTGGCCCTCCTTCGAGTGATTTTACATTTAGACTTGCTGCTAGAGTTACTGAAAATTCGGTGATTACAGTGTCCTTAGGGCGTGTTCCTCGGTTAGGTTTCTCACGTATGGGTGAATCTTTACTTTCGGAAATTCCTAGAGTTGAAAGCTCCTCTTGTTTTAGCGGTCAGCAGAGGGAAGGAAGTGGGACTGTGATTAAGGAGCATGTTCTTGAATTCTTATTGACCATGAATCATTCCGAGGAAGCTGACAATCCTGTTCCTAGATCTGTCTCGAATCTTGTGGTTCACATAATTGATACGCATGTAGACCAGCTTCAAGATCTTGTGACAAAGCTTGAGATGGAGTTGGACTCTGTCGAGCTTGATCTGGATAAAGGTGGTTATGCTCTGAAGAAGCAAATGCTAGATGATAGAAGATTCCCCAAGATACATATTAATTTGCAGCGGCTCCTGCAGGTGATTGCCCATGGAGAACAAGTGTATCTTCGTGTAAAAGAAAAATCCTCTTCGAAAAGATGGTTATCGATTGAAGACATTAACTCCCTTGAAGAACTAATTGGAAGGTTGAGGAGGCTAAAAGAGAATGTAGGGTTTATAGTTAATCGTGTCACGGCAATACAGGCTAGTCTTGACAGTTGGCAATCGGAGCAAATAAACCGTAAACTGTACTATCTCTCATTCCTTTCAATAGTATTCCTCCCCTTATCCATCATAACAGGAGTATTTGGCATGAATGTTGGAGGAGTTCCATGGACAGGTCAAAATTCCCCGGAGCTAAAGGATGGTTTTCGGAACGTCATGTTAGTATGTGTCGCTATGCTTGTTCTTGTACTACTCTGCTTCCTTTTTCCTGCTCTTTATACGCGGATAGTTGCTGCTTGGCGAGAAAAGAAAACTCTTGGAAGAAACTGGTCACTGAACAAGAAGTCGTTGCTCAGGAGACCGTTAAGAATAGATGATACGGCGAGAGGGGGTTACCTTCGGATTTAA
Protein sequence

>Msa0190310

MELASRHRVMENGGAEEMDVENPVDEHRFYPSHPVGLVKKRAYIFDGLGNFYNKEWDLADLYQKEEKESDAVEGRGNEFSWYHVELPKGNQKLSQSAQDLIGVLCPPLKLQDILSLVSNGPFCAHVDGALVFRVNSPGPPSSDFTFRLAARVTENSVITVSLGRVPRLGFSRMGESLLSEIPRVESSSCFSGQQREGSGTVIKEHVLEFLLTMNHSEEADNPVPRSVSNLVVHIIDTHVDQLQDLVTKLEMELDSVELDLDKGGYALKKQMLDDRRFPKIHINLQRLLQVIAHGEQVYLRVKEKSSSKRWLSIEDINSLEELIGRLRRLKENVGFIVNRVTAIQASLDSWQSEQINRKLYYLSFLSIVFLPLSIITGVFGMNVGGVPWTGQNSPELKDGFRNVMLVCVAMLVLVLLCFLFPALYTRIVAAWREKKTLGRNWSLNKKSLLRRPLRIDDTARGGYLRI*