Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460370 | XP_024627854.1 | 92.512 | 601 | 44 | 1 | 2 | 601 | 672 | 1272 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460370 | sp|Q8L5R3|TBCD_ARATH | 58.167 | 600 | 228 | 4 | 2 | 601 | 678 | 1254 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460370 | A0A072VQN2 | 92.512 | 601 | 44 | 1 | 2 | 601 | 672 | 1272 | 0.0 | 1130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025720 | Msa1460370 | 0.805396 | 1.362040e-49 | -8.615850e-47 |
| Msa0030160 | Msa1460370 | 0.822738 | 2.017610e-53 | -8.615850e-47 |
| Msa0035020 | Msa1460370 | 0.808151 | 3.565393e-50 | -8.615850e-47 |
| Msa0051040 | Msa1460370 | 0.810649 | 1.037563e-50 | -8.615850e-47 |
| Msa0108410 | Msa1460370 | 0.800064 | 1.717469e-48 | -8.615850e-47 |
| Msa1345100 | Msa1460370 | 0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa1346840 | Msa1460370 | 0.802288 | 6.023916e-49 | -8.615850e-47 |
| Msa1368360 | Msa1460370 | 0.804709 | 1.896281e-49 | -8.615850e-47 |
| Msa1369690 | Msa1460370 | 0.863573 | 2.260444e-64 | -8.615850e-47 |
| Msa1380220 | Msa1460370 | 0.819747 | 9.874146e-53 | -8.615850e-47 |
| Msa1393570 | Msa1460370 | 0.827919 | 1.198929e-54 | -8.615850e-47 |
| Msa1418240 | Msa1460370 | 0.818187 | 2.233827e-52 | -8.615850e-47 |
| Msa1437270 | Msa1460370 | 0.813899 | 2.026400e-51 | -8.615850e-47 |
| Msa1452710 | Msa1460370 | 0.813715 | 2.224506e-51 | -8.615850e-47 |
| Msa0638350 | Msa1460370 | 0.814710 | 1.341240e-51 | -8.615850e-47 |
| Msa0661830 | Msa1460370 | 0.804651 | 1.950429e-49 | -8.615850e-47 |
| Msa0688390 | Msa1460370 | 0.807127 | 5.883612e-50 | -8.615850e-47 |
| Msa0699510 | Msa1460370 | 0.832497 | 9.138569e-56 | -8.615850e-47 |
| Msa0707250 | Msa1460370 | 0.856629 | 2.826519e-62 | -8.615850e-47 |
| Msa0711150 | Msa1460370 | 0.830230 | 3.300435e-55 | -8.615850e-47 |
| Msa0741440 | Msa1460370 | 0.807201 | 5.674239e-50 | -8.615850e-47 |
| Msa0743930 | Msa1460370 | 0.804312 | 2.295182e-49 | -8.615850e-47 |
| Msa0760560 | Msa1460370 | 0.808586 | 2.879273e-50 | -8.615850e-47 |
| Msa0789100 | Msa1460370 | 0.806452 | 8.169351e-50 | -8.615850e-47 |
| Msa0796580 | Msa1460370 | -0.808230 | 3.429992e-50 | -8.615850e-47 |
| Msa0822500 | Msa1460370 | 0.840972 | 6.299855e-58 | -8.615850e-47 |
| Msa0823370 | Msa1460370 | 0.801681 | 8.028603e-49 | -8.615850e-47 |
| Msa0159340 | Msa1460370 | 0.807827 | 4.179041e-50 | -8.615850e-47 |
| Msa0190310 | Msa1460370 | 0.803311 | 3.704383e-49 | -8.615850e-47 |
| Msa0217700 | Msa1460370 | 0.826482 | 2.647537e-54 | -8.615850e-47 |
| Msa0232020 | Msa1460370 | 0.804677 | 1.925795e-49 | -8.615850e-47 |
| Msa0237210 | Msa1460370 | 0.801512 | 8.694562e-49 | -8.615850e-47 |
| Msa1225860 | Msa1460370 | -0.820559 | 6.434589e-53 | -8.615850e-47 |
| Msa1232740 | Msa1460370 | 0.819936 | 8.939295e-53 | -8.615850e-47 |
| Msa1243870 | Msa1460370 | 0.803402 | 3.546250e-49 | -8.615850e-47 |
| Msa1277690 | Msa1460370 | 0.808613 | 2.841909e-50 | -8.615850e-47 |
| Msa1299400 | Msa1460370 | -0.800947 | 1.134924e-48 | -8.615850e-47 |
| Msa1306560 | Msa1460370 | 0.804015 | 2.646198e-49 | -8.615850e-47 |
| Msa1313320 | Msa1460370 | 0.817830 | 2.689890e-52 | -8.615850e-47 |
| Msa1331050 | Msa1460370 | -0.823020 | 1.734235e-53 | -8.615850e-47 |
| Msa0382370 | Msa1460370 | 0.818394 | 2.005794e-52 | -8.615850e-47 |
| Msa0432160 | Msa1460370 | 0.818656 | 1.749410e-52 | -8.615850e-47 |
| Msa0450400 | Msa1460370 | -0.828058 | 1.110325e-54 | -8.615850e-47 |
| Msa0476680 | Msa1460370 | 0.827027 | 1.961965e-54 | -8.615850e-47 |
| Msa0481970 | Msa1460370 | 0.811906 | 5.538900e-51 | -8.615850e-47 |
| Msa1034500 | Msa1460370 | 0.802395 | 5.725751e-49 | -8.615850e-47 |
| Msa1048220 | Msa1460370 | 0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa1064250 | Msa1460370 | 0.820204 | 7.762072e-53 | -8.615850e-47 |
| Msa1089450 | Msa1460370 | 0.847635 | 1.021036e-59 | -8.615850e-47 |
| Msa1089460 | Msa1460370 | 0.816829 | 4.519471e-52 | -8.615850e-47 |
| Msa1104560 | Msa1460370 | 0.822316 | 2.528736e-53 | -8.615850e-47 |
| Msa0240900 | Msa1460370 | 0.840094 | 1.069192e-57 | -8.615850e-47 |
| Msa0241140 | Msa1460370 | 0.824405 | 8.215989e-54 | -8.615850e-47 |
| Msa0257490 | Msa1460370 | 0.813355 | 2.669658e-51 | -8.615850e-47 |
| Msa0259210 | Msa1460370 | 0.805144 | 1.538539e-49 | -8.615850e-47 |
| Msa0267790 | Msa1460370 | 0.810643 | 1.041156e-50 | -8.615850e-47 |
| Msa0278570 | Msa1460370 | 0.813771 | 2.162012e-51 | -8.615850e-47 |
| Msa0278580 | Msa1460370 | 0.807219 | 5.624899e-50 | -8.615850e-47 |
| Msa0296820 | Msa1460370 | 0.835365 | 1.750762e-56 | -8.615850e-47 |
| Msa0297610 | Msa1460370 | 0.800231 | 1.587895e-48 | -8.615850e-47 |
| Msa0315690 | Msa1460370 | 0.817064 | 4.002744e-52 | -8.615850e-47 |
| Msa0317970 | Msa1460370 | 0.870389 | 1.513918e-66 | -8.615850e-47 |
| Msa0322240 | Msa1460370 | 0.828502 | 8.674551e-55 | -8.615850e-47 |
| Msa0357900 | Msa1460370 | 0.809876 | 1.523344e-50 | -8.615850e-47 |
| Msa1145810 | Msa1460370 | 0.801661 | 8.105391e-49 | -8.615850e-47 |
| Msa1155170 | Msa1460370 | -0.809024 | 2.321726e-50 | -8.615850e-47 |
| Msa1158390 | Msa1460370 | 0.827279 | 1.707799e-54 | -8.615850e-47 |
| Msa1162770 | Msa1460370 | 0.800581 | 1.347439e-48 | -8.615850e-47 |
| Msa1173300 | Msa1460370 | 0.801712 | 7.910982e-49 | -8.615850e-47 |
| Msa1175200 | Msa1460370 | 0.803661 | 3.134262e-49 | -8.615850e-47 |
| Msa1209440 | Msa1460370 | 0.811842 | 5.718134e-51 | -8.615850e-47 |
| Msa1211230 | Msa1460370 | -0.819871 | 9.248523e-53 | -8.615850e-47 |
| Msa1211420 | Msa1460370 | -0.828341 | 9.487575e-55 | -8.615850e-47 |
| Msa0485240 | Msa1460370 | 0.821845 | 3.251527e-53 | -8.615850e-47 |
| Msa0510930 | Msa1460370 | 0.805228 | 1.477383e-49 | -8.615850e-47 |
| Msa0521010 | Msa1460370 | 0.832352 | 9.925717e-56 | -8.615850e-47 |
| Msa0521670 | Msa1460370 | 0.801777 | 7.673560e-49 | -8.615850e-47 |
| Msa0532990 | Msa1460370 | 0.831975 | 1.230864e-55 | -8.615850e-47 |
| Msa0572840 | Msa1460370 | 0.832280 | 1.034159e-55 | -8.615850e-47 |
| Msa0583360 | Msa1460370 | -0.819442 | 1.159123e-52 | -8.615850e-47 |
| Msa0934140 | Msa1460370 | 0.816296 | 5.950751e-52 | -8.615850e-47 |
| Msa0969810 | Msa1460370 | 0.813071 | 3.081357e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460370 | MtrunA17_Chr1g0210711 | 92.512 | 601 | 44 | 1 | 2 | 601 | 672 | 1272 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460370 | AT3G60740.1 | 58.167 | 600 | 228 | 4 | 2 | 601 | 678 | 1254 | 0.0 | 685 |
| Msa1460370 | AT3G60740.2 | 58.167 | 600 | 228 | 4 | 2 | 601 | 606 | 1182 | 0.0 | 684 |
| Msa1460370 | AT3G60740.3 | 57.611 | 427 | 158 | 4 | 2 | 428 | 678 | 1081 | 6.52e-165 | 499 |
Find 118 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTGTTAGAGTATTTAAA+AGG | 0.189542 | tig0040873:+1793 | Msa1460370:CDS |
| AGAACCTGTATGTGAGATTT+TGG | 0.224421 | tig0040873:-603 | Msa1460370:intergenic |
| TTCTCTGGCAATAGAATTAA+AGG | 0.230523 | tig0040873:+4127 | Msa1460370:CDS |
| ACAAATCCCGCCAACTAAAT+TGG | 0.259867 | tig0040873:-1409 | Msa1460370:intergenic |
| TTCTCTCGGAAAGGTATATA+TGG | 0.266887 | tig0040873:-1519 | Msa1460370:intergenic |
| ATATACTCCCTGAGCATTCT+TGG | 0.275030 | tig0040873:-1838 | Msa1460370:intergenic |
| GTACAGAGTGTTGCTGTTAA+AGG | 0.276220 | tig0040873:+697 | Msa1460370:intron |
| ATCATACAGCTGCTTCAATT+TGG | 0.279682 | tig0040873:+1688 | Msa1460370:CDS |
| CGCTAAGAAGCCTAAAGATT+TGG | 0.281822 | tig0040873:+4668 | Msa1460370:CDS |
| CCCTGAGCATTCTTGGATTA+GGG | 0.289492 | tig0040873:-1831 | Msa1460370:intergenic |
| CGAAGGAAGCAGATGCAAAA+TGG | 0.289712 | tig0040873:+1559 | Msa1460370:CDS |
| AGTCATCGTACCCACTTTAA+AGG | 0.290504 | tig0040873:+1912 | Msa1460370:CDS |
| TGACTGGTTAACAACTCATT+TGG | 0.305577 | tig0040873:-859 | Msa1460370:intergenic |
| TACCTTGTCCTCCTGCAAAA+TGG | 0.318484 | tig0040873:+4474 | Msa1460370:CDS |
| CAGGACTAACCTCCATATTA+AGG | 0.321942 | tig0040873:-2460 | Msa1460370:intergenic |
| TCCCTGAGCATTCTTGGATT+AGG | 0.325329 | tig0040873:-1832 | Msa1460370:intergenic |
| TCCTCATTAGTCGAGTCATC+TGG | 0.329434 | tig0040873:+4708 | Msa1460370:CDS |
| TTACTAGATTTAGATGATAA+AGG | 0.338755 | tig0040873:+745 | Msa1460370:CDS |
| TATAGCAGATATGTGGTATC+AGG | 0.339939 | tig0040873:+1715 | Msa1460370:CDS |
| AGTCATATCTATTGGTGATT+TGG | 0.342770 | tig0040873:+1741 | Msa1460370:CDS |
| TGATAATGCCACTTTAGATA+TGG | 0.347076 | tig0040873:-529 | Msa1460370:intergenic |
| ATTGTTTGAATTGCTTGGTT+TGG | 0.351515 | tig0040873:+4596 | Msa1460370:CDS |
| AATCTTGCTACCAATTTAGT+TGG | 0.369187 | tig0040873:+1399 | Msa1460370:CDS |
| ACAGAGGTGATGTAGGTTCT+TGG | 0.371236 | tig0040873:+1205 | Msa1460370:CDS |
| CCTCTCCTTACAGCGGCATT+TGG | 0.371454 | tig0040873:-811 | Msa1460370:intergenic |
| CTCTGTAGGATTGGCAGATC+AGG | 0.372959 | tig0040873:+1273 | Msa1460370:CDS |
| TATCGCATTTCCTGTATTGT+TGG | 0.373210 | tig0040873:-1888 | Msa1460370:intergenic |
| GCTTCAGCATCTCTTTCCTC+AGG | 0.383142 | tig0040873:-1015 | Msa1460370:intergenic |
| TGAATTGCTTGGTTTGGAGG+TGG | 0.384529 | tig0040873:+4602 | Msa1460370:CDS |
| GAATTGCTTGGTTTGGAGGT+GGG | 0.407112 | tig0040873:+4603 | Msa1460370:CDS |
| TCAGGTTTAGTCATATCTAT+TGG | 0.407873 | tig0040873:+1733 | Msa1460370:CDS |
| CATGCTGGTATTGCAATACT+TGG | 0.409961 | tig0040873:+4173 | Msa1460370:CDS |
| TTCACCCACACGCTAAATCT+AGG | 0.413419 | tig0040873:-4754 | Msa1460370:intergenic |
| GACTGGTTAACAACTCATTT+GGG | 0.417124 | tig0040873:-858 | Msa1460370:intergenic |
| AATTGCTTGGTTTGGAGGTG+GGG | 0.428201 | tig0040873:+4604 | Msa1460370:CDS |
| AAATTATTTCTATGACTCGC+TGG | 0.429915 | tig0040873:+4535 | Msa1460370:CDS |
| GTTCGTGAGGCTGCATTACA+TGG | 0.434566 | tig0040873:+1228 | Msa1460370:CDS |
| CAGAGGTGATGTAGGTTCTT+GGG | 0.436384 | tig0040873:+1206 | Msa1460370:CDS |
| CACTGTTAGAGTATTTAAAA+GGG | 0.437380 | tig0040873:+1794 | Msa1460370:CDS |
| TACAGAGTGTTGCTGTTAAA+GGG | 0.439297 | tig0040873:+698 | Msa1460370:intron |
| GTTTGAATTGCTTGGTTTGG+AGG | 0.441179 | tig0040873:+4599 | Msa1460370:CDS |
| GCTCTCGTATGGATTGGTTC+TGG | 0.449432 | tig0040873:-4212 | Msa1460370:intergenic |
| ATACTCTAAATGAGAATTTG+AGG | 0.450365 | tig0040873:+577 | Msa1460370:CDS |
| AGAGGATCTGCATTGGCAAT+AGG | 0.457664 | tig0040873:+829 | Msa1460370:CDS |
| GTCTGTGAAACATTAGTTAG+TGG | 0.465974 | tig0040873:+1069 | Msa1460370:CDS |
| GAAGGAAGCAGATGCAAAAT+GGG | 0.470077 | tig0040873:+1560 | Msa1460370:CDS |
| CTTCAGCATCTCTTTCCTCA+GGG | 0.470165 | tig0040873:-1014 | Msa1460370:intergenic |
| TGTGGGTTCTCCAACAATAC+AGG | 0.472563 | tig0040873:+1878 | Msa1460370:CDS |
| ATCTTTAGGCTTCTTAGCGT+TGG | 0.477774 | tig0040873:-4664 | Msa1460370:intergenic |
| TGACTTCTTCTAACTTCTCT+CGG | 0.477797 | tig0040873:-1533 | Msa1460370:intergenic |
| GAAAGGCAATACCTTTAAAG+TGG | 0.482802 | tig0040873:-1923 | Msa1460370:intergenic |
| GTTGAATTGTTTGAATTGCT+TGG | 0.487703 | tig0040873:+4591 | Msa1460370:CDS |
| ACCCTAATCCAAGAATGCTC+AGG | 0.490549 | tig0040873:+1830 | Msa1460370:CDS |
| TAAGCAAGCTGTGGAGAAGA+TGG | 0.497161 | tig0040873:+1431 | Msa1460370:CDS |
| TTGCTACCAATTTAGTTGGC+GGG | 0.498845 | tig0040873:+1403 | Msa1460370:CDS |
| CTGATCCAAATGCCGCTGTA+AGG | 0.500163 | tig0040873:+806 | Msa1460370:CDS |
| CTTGCTACCAATTTAGTTGG+CGG | 0.500807 | tig0040873:+1402 | Msa1460370:CDS |
| AAGCACATTTCTCCATTGAC+TGG | 0.501608 | tig0040873:-875 | Msa1460370:intergenic |
| GACTCGCTGGGATGATAGCA+TGG | 0.502260 | tig0040873:+4548 | Msa1460370:CDS |
| ATGAGTTGTTAACCAGTCAA+TGG | 0.506120 | tig0040873:+863 | Msa1460370:CDS |
| GCACGTCTTTATCGTGGAAA+GGG | 0.508234 | tig0040873:+459 | Msa1460370:CDS |
| AGTGTACGTATATGCTCTGT+AGG | 0.509064 | tig0040873:+1259 | Msa1460370:CDS |
| TGCTGTCAGTTGACATCCTG+TGG | 0.510604 | tig0040873:+1860 | Msa1460370:CDS |
| CCTCATTAGTCGAGTCATCT+GGG | 0.511144 | tig0040873:+4709 | Msa1460370:CDS |
| TGCAATACCAGCATGCAACT+TGG | 0.511728 | tig0040873:-4165 | Msa1460370:intergenic |
| TCTTGTTCATCCGTACCCTA+AGG | 0.516816 | tig0040873:+4256 | Msa1460370:CDS |
| TTGTGGCTGTTGTAAAATTG+AGG | 0.520626 | tig0040873:+906 | Msa1460370:CDS |
| TTTGGTAGATTCTTTGAAGA+GGG | 0.521338 | tig0040873:+1759 | Msa1460370:CDS |
| TCATCTCTCAAGAACGGTGA+TGG | 0.523034 | tig0040873:+4627 | Msa1460370:CDS |
| TGGTTGTTATAGCAGATATG+TGG | 0.527259 | tig0040873:+1708 | Msa1460370:CDS |
| GAGTGTTGCTGTTAAAGGGC+TGG | 0.528410 | tig0040873:+702 | Msa1460370:intron |
| GCATCCAAAATCTCACATAC+AGG | 0.530097 | tig0040873:+599 | Msa1460370:CDS |
| GTTGACAACAGAGGTGATGT+AGG | 0.532654 | tig0040873:+1198 | Msa1460370:CDS |
| AATTATTTCTATGACTCGCT+GGG | 0.535594 | tig0040873:+4536 | Msa1460370:CDS |
| GACTTCTCCAAGTTGCATGC+TGG | 0.536808 | tig0040873:+4158 | Msa1460370:CDS |
| GAGAAGGCTCTCGTATGGAT+TGG | 0.539384 | tig0040873:-4218 | Msa1460370:intergenic |
| TTAAGCATATTATCAGTCAA+AGG | 0.540182 | tig0040873:-1345 | Msa1460370:intergenic |
| AAAATCATTCTCGGTGAAAG+AGG | 0.541155 | tig0040873:-1109 | Msa1460370:intergenic |
| TTAAGAATCACCTTAGGGTA+CGG | 0.543572 | tig0040873:-4266 | Msa1460370:intergenic |
| GTTGAGAGAAGGCTCTCGTA+TGG | 0.544853 | tig0040873:-4223 | Msa1460370:intergenic |
| ACGCATCTCCATATCTAAAG+TGG | 0.545195 | tig0040873:+521 | Msa1460370:CDS |
| CCTGCAAAATGGAAATCTTG+TGG | 0.554314 | tig0040873:+4485 | Msa1460370:CDS |
| TTTGAAGAGGGTATCACTCT+CGG | 0.559290 | tig0040873:+1771 | Msa1460370:CDS |
| AGCACGTCTTTATCGTGGAA+AGG | 0.563167 | tig0040873:+458 | Msa1460370:CDS |
| TCTTCTAACTTCTCTCGGAA+AGG | 0.563379 | tig0040873:-1528 | Msa1460370:intergenic |
| AAAGATATTCCTTAATATGG+AGG | 0.568951 | tig0040873:+2451 | Msa1460370:CDS |
| TCTCTGGCAATAGAATTAAA+GGG | 0.569416 | tig0040873:+4128 | Msa1460370:CDS |
| ACGTATATGCTCTGTAGGAT+TGG | 0.569940 | tig0040873:+1264 | Msa1460370:CDS |
| CCCAGATGACTCGACTAATG+AGG | 0.573370 | tig0040873:-4709 | Msa1460370:intergenic |
| AAAAGTAAGAAGTTGAGAGA+AGG | 0.580104 | tig0040873:-4234 | Msa1460370:intergenic |
| CCCTAATCCAAGAATGCTCA+GGG | 0.588134 | tig0040873:+1831 | Msa1460370:CDS |
| TGTATTGTTGGAGAACCCAC+AGG | 0.590881 | tig0040873:-1876 | Msa1460370:intergenic |
| CGGGATTTGTAAGCAAGCTG+TGG | 0.592065 | tig0040873:+1422 | Msa1460370:CDS |
| GTTAGAAGAAGTCATTCCGA+AGG | 0.596658 | tig0040873:+1542 | Msa1460370:CDS |
| CTAAATCTAGTAAGTAAGCA+CGG | 0.599471 | tig0040873:-735 | Msa1460370:intergenic |
| GCGCGAGTAAATGCTGTCAA+AGG | 0.602373 | tig0040873:+1036 | Msa1460370:CDS |
| ATTTGGTAGATTCTTTGAAG+AGG | 0.603035 | tig0040873:+1758 | Msa1460370:CDS |
| ACTGTTAGAGTATTTAAAAG+GGG | 0.603137 | tig0040873:+1795 | Msa1460370:CDS |
| TGCTTGTCTAGAAAATCAGA+TGG | 0.608132 | tig0040873:+1297 | Msa1460370:CDS |
| CGTCTTTATCGTGGAAAGGG+AGG | 0.611257 | tig0040873:+462 | Msa1460370:CDS |
| GAAGCAGCTGTATGATGTGT+GGG | 0.612758 | tig0040873:-1681 | Msa1460370:intergenic |
| AAAGGCAATACCTTTAAAGT+GGG | 0.617607 | tig0040873:-1922 | Msa1460370:intergenic |
| TGTAAGGAGAGGATCTGCAT+TGG | 0.618723 | tig0040873:+822 | Msa1460370:CDS |
| CCAAATGCCGCTGTAAGGAG+AGG | 0.628806 | tig0040873:+811 | Msa1460370:CDS |
| GTGGGGTCATCTCTCAAGAA+CGG | 0.639023 | tig0040873:+4621 | Msa1460370:CDS |
| TGTAGGTTCTTGGGTTCGTG+AGG | 0.646114 | tig0040873:+1215 | Msa1460370:CDS |
| AGAACGGTGATGGAGCAGCA+AGG | 0.646311 | tig0040873:+4637 | Msa1460370:CDS |
| TGCAGATCCTCTCCTTACAG+CGG | 0.651871 | tig0040873:-818 | Msa1460370:intergenic |
| GCAAACCTAGATTTAGCGTG+TGG | 0.652384 | tig0040873:+4749 | Msa1460370:three_prime_UTR |
| GCTGTCAGTTGACATCCTGT+GGG | 0.655342 | tig0040873:+1861 | Msa1460370:CDS |
| TGAAGCAGCTGTATGATGTG+TGG | 0.662732 | tig0040873:-1682 | Msa1460370:intergenic |
| CAAACCTAGATTTAGCGTGT+GGG | 0.665926 | tig0040873:+4750 | Msa1460370:three_prime_UTR |
| AAGGTAGACATGTTCAGCTG+AGG | 0.671097 | tig0040873:-4457 | Msa1460370:intergenic |
| ACTCGCTGGGATGATAGCAT+GGG | 0.674466 | tig0040873:+4549 | Msa1460370:CDS |
| GGGTGAACGTTTGACCAACA+TGG | 0.684831 | tig0040873:+4770 | Msa1460370:three_prime_UTR |
| CCTATTGCAGGAAAACCCTG+AGG | 0.717092 | tig0040873:+999 | Msa1460370:intron |
| ATCAGTCAAAGGTTGCACTG+CGG | 0.743698 | tig0040873:-1334 | Msa1460370:intergenic |
| GACTATTCTGTTGACAACAG+AGG | 0.756741 | tig0040873:+1189 | Msa1460370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATAAAGAATG+AGG | + | tig0040873:1137-1156 | Msa1460370:CDS | 10.0% |
| !! | AAATAAAAAAGATAACAAAA+AGG | - | tig0040873:2022-2041 | Msa1460370:intergenic | 10.0% |
| !! | TAAAAAATTATTAATGATTG+GGG | - | tig0040873:2228-2247 | Msa1460370:intergenic | 10.0% |
| !!! | TTTTTATTTAAATCAAATGT+TGG | + | tig0040873:2250-2269 | Msa1460370:intron | 10.0% |
| !! | TTCATTAAATTATTTAATGA+TGG | + | tig0040873:3673-3692 | Msa1460370:intron | 10.0% |
| !! | TTATTGTATATACAACAAAA+GGG | - | tig0040873:2283-2302 | Msa1460370:intergenic | 15.0% |
| !! | ATTATTGTATATACAACAAA+AGG | - | tig0040873:2284-2303 | Msa1460370:intergenic | 15.0% |
| !! | ATGTTAGAAAATGAATATAT+AGG | + | tig0040873:2871-2890 | Msa1460370:intron | 15.0% |
| !! | GAAAAGTTTACAAAAATTAA+GGG | - | tig0040873:3000-3019 | Msa1460370:intergenic | 15.0% |
| !! | AGAAAAGTTTACAAAAATTA+AGG | - | tig0040873:3001-3020 | Msa1460370:intergenic | 15.0% |
| !!! | AAAGGATTTTTTTTTTTTGA+AGG | + | tig0040873:3283-3302 | Msa1460370:intron | 15.0% |
| !!! | AAGGATTTTTTTTTTTTGAA+GGG | + | tig0040873:3284-3303 | Msa1460370:intron | 15.0% |
| !!! | TCTTAATATGCTTTTAAAAA+AGG | + | tig0040873:3322-3341 | Msa1460370:intron | 15.0% |
| !! | TAATTTAATGAACAATTCTT+TGG | - | tig0040873:3665-3684 | Msa1460370:intergenic | 15.0% |
| !!! | TATTTTGTAAATGGTAAAAA+TGG | - | tig0040873:4003-4022 | Msa1460370:intergenic | 15.0% |
| !!! | TTAATTTAATTTTACCATGT+TGG | - | tig0040873:4787-4806 | Msa1460370:intergenic | 15.0% |
| !! | TAAATAATGATTCAAATTGC+TGG | - | tig0040873:646-665 | Msa1460370:intergenic | 20.0% |
| !! | TTACTAGATTTAGATGATAA+AGG | + | tig0040873:745-764 | Msa1460370:CDS | 20.0% |
| !! | AAATAGAGAAAAATCATTCT+CGG | - | tig0040873:1121-1140 | Msa1460370:intergenic | 20.0% |
| !! | TAATATGCTTAAGAAAAATG+CGG | + | tig0040873:1356-1375 | Msa1460370:CDS | 20.0% |
| !!! | ATACAATACTATTTTATTGC+AGG | + | tig0040873:1642-1661 | Msa1460370:intron | 20.0% |
| !!! | TGCTTTAGATTTATTATTCT+TGG | + | tig0040873:1954-1973 | Msa1460370:intron | 20.0% |
| !! | TAGATTTATTATTCTTGGTT+TGG | + | tig0040873:1959-1978 | Msa1460370:intron | 20.0% |
| !!! | ATCTTTTTTATTTTCACGTA+TGG | + | tig0040873:2029-2048 | Msa1460370:intron | 20.0% |
| !! | AACTGATTATAGCAAATTAT+GGG | - | tig0040873:2098-2117 | Msa1460370:intergenic | 20.0% |
| !! | CAAAAAGATATTCCTTAATA+TGG | + | tig0040873:2448-2467 | Msa1460370:CDS | 20.0% |
| !!! | TTTGGTTGTTGTTATATAAA+AGG | + | tig0040873:3396-3415 | Msa1460370:intron | 20.0% |
| !!! | TTGGTTGTTGTTATATAAAA+GGG | + | tig0040873:3397-3416 | Msa1460370:intron | 20.0% |
| !!! | ATTTTAATGCCATTTTTCTT+AGG | + | tig0040873:3451-3470 | Msa1460370:intron | 20.0% |
| !! | ACTAATTTACCTAAGAAAAA+TGG | - | tig0040873:3463-3482 | Msa1460370:intergenic | 20.0% |
| !! | AGAACATAATAAGAAATGAA+GGG | - | tig0040873:3887-3906 | Msa1460370:intergenic | 20.0% |
| !!! | CACATCTAATATTTTGTAAA+TGG | - | tig0040873:4012-4031 | Msa1460370:intergenic | 20.0% |
| !!! | TGTCTATTGATTTTATCTTT+TGG | + | tig0040873:4034-4053 | Msa1460370:intron | 20.0% |
| !! | AATATTTAAGAATCACCTTA+GGG | - | tig0040873:4274-4293 | Msa1460370:intergenic | 20.0% |
| ! | ATACTCTAAATGAGAATTTG+AGG | + | tig0040873:577-596 | Msa1460370:CDS | 25.0% |
| ! | TATTACATCTATACTAGCTA+AGG | + | tig0040873:948-967 | Msa1460370:intron | 25.0% |
| ! | TTAAGCATATTATCAGTCAA+AGG | - | tig0040873:1348-1367 | Msa1460370:intergenic | 25.0% |
| !! | CACTGTTAGAGTATTTAAAA+GGG | + | tig0040873:1794-1813 | Msa1460370:CDS | 25.0% |
| !! | ACTGTTAGAGTATTTAAAAG+GGG | + | tig0040873:1795-1814 | Msa1460370:CDS | 25.0% |
| !!! | ATTATTCTTGGTTTGGTTAA+TGG | + | tig0040873:1966-1985 | Msa1460370:intron | 25.0% |
| !!! | TTTTATTTTCACGTATGGTA+TGG | + | tig0040873:2034-2053 | Msa1460370:intron | 25.0% |
| !!! | TTTATTTTCACGTATGGTAT+GGG | + | tig0040873:2035-2054 | Msa1460370:intron | 25.0% |
| ! | ACTGATTATAGCAAATTATG+GGG | - | tig0040873:2097-2116 | Msa1460370:intergenic | 25.0% |
| ! | CAACTGATTATAGCAAATTA+TGG | - | tig0040873:2099-2118 | Msa1460370:intergenic | 25.0% |
| !!! | CATAATTTGCTATAATCAGT+TGG | + | tig0040873:2097-2116 | Msa1460370:intron | 25.0% |
| ! | AGATTTACATTTCAAAACAG+AGG | - | tig0040873:2322-2341 | Msa1460370:intergenic | 25.0% |
| !! | AATTTGTTCCGAGTATAATA+TGG | + | tig0040873:2355-2374 | Msa1460370:intron | 25.0% |
| ! | AAAGATATTCCTTAATATGG+AGG | + | tig0040873:2451-2470 | Msa1460370:CDS | 25.0% |
| ! | TTAATGTTTCTCTTATGTTG+CGG | + | tig0040873:2555-2574 | Msa1460370:intron | 25.0% |
| ! | TGAATATATAGGATATCACA+TGG | + | tig0040873:2882-2901 | Msa1460370:intron | 25.0% |
| ! | TATCACATGGAAATTTAAGA+AGG | + | tig0040873:2895-2914 | Msa1460370:intron | 25.0% |
| ! | ATAAGTTTGAAGAATTTGCA+GGG | - | tig0040873:2926-2945 | Msa1460370:intergenic | 25.0% |
| ! | TATAAGTTTGAAGAATTTGC+AGG | - | tig0040873:2927-2946 | Msa1460370:intergenic | 25.0% |
| ! | CGATTTACCATATTGTTAAA+TGG | + | tig0040873:3095-3114 | Msa1460370:intron | 25.0% |
| ! | TTTCTCACCATTTAACAATA+TGG | - | tig0040873:3105-3124 | Msa1460370:intergenic | 25.0% |
| ! | TATTGTTAAATGGTGAGAAA+CGG | + | tig0040873:3105-3124 | Msa1460370:intron | 25.0% |
| ! | TCATTTGATACTTATGAACA+AGG | - | tig0040873:3178-3197 | Msa1460370:intergenic | 25.0% |
| ! | GAACATAATAAGAAATGAAG+GGG | - | tig0040873:3886-3905 | Msa1460370:intergenic | 25.0% |
| ! | CAGAACATAATAAGAAATGA+AGG | - | tig0040873:3888-3907 | Msa1460370:intergenic | 25.0% |
| ! | GATTTATACGTTGTAATTTC+AGG | + | tig0040873:4070-4089 | Msa1460370:intron | 25.0% |
| ! | GAATATTTAAGAATCACCTT+AGG | - | tig0040873:4275-4294 | Msa1460370:intergenic | 25.0% |
| !! | TGATAATGCCACTTTAGATA+TGG | - | tig0040873:532-551 | Msa1460370:intergenic | 30.0% |
| CTAAATCTAGTAAGTAAGCA+CGG | - | tig0040873:738-757 | Msa1460370:intergenic | 30.0% | |
| AATCTTGCTACCAATTTAGT+TGG | + | tig0040873:1399-1418 | Msa1460370:CDS | 30.0% | |
| TTGACTATCAACTTCAAGAA+AGG | - | tig0040873:1609-1628 | Msa1460370:intergenic | 30.0% | |
| TCAGGTTTAGTCATATCTAT+TGG | + | tig0040873:1733-1752 | Msa1460370:CDS | 30.0% | |
| ! | AGTCATATCTATTGGTGATT+TGG | + | tig0040873:1741-1760 | Msa1460370:CDS | 30.0% |
| ! | ATTTGGTAGATTCTTTGAAG+AGG | + | tig0040873:1758-1777 | Msa1460370:CDS | 30.0% |
| ! | TTTGGTAGATTCTTTGAAGA+GGG | + | tig0040873:1759-1778 | Msa1460370:CDS | 30.0% |
| ! | GCACTGTTAGAGTATTTAAA+AGG | + | tig0040873:1793-1812 | Msa1460370:CDS | 30.0% |
| !! | AAAGGCAATACCTTTAAAGT+GGG | - | tig0040873:1925-1944 | Msa1460370:intergenic | 30.0% |
| !! | ATAAATCTAAAGCACTGCTT+AGG | - | tig0040873:1948-1967 | Msa1460370:intergenic | 30.0% |
| ! | TTATTTTCACGTATGGTATG+GGG | + | tig0040873:2036-2055 | Msa1460370:intron | 30.0% |
| CTGATTATAGCAAATTATGG+GGG | - | tig0040873:2096-2115 | Msa1460370:intergenic | 30.0% | |
| TATGAACTCAAAACATGACA+AGG | - | tig0040873:2180-2199 | Msa1460370:intergenic | 30.0% | |
| TTTACATTTCAAAACAGAGG+AGG | - | tig0040873:2319-2338 | Msa1460370:intergenic | 30.0% | |
| TGAGAGTTCCATATTATACT+CGG | - | tig0040873:2366-2385 | Msa1460370:intergenic | 30.0% | |
| AAAATAGAAAACAGAGAAGC+AGG | - | tig0040873:2482-2501 | Msa1460370:intergenic | 30.0% | |
| AATACTCATAGAAACTCAAC+AGG | - | tig0040873:2513-2532 | Msa1460370:intergenic | 30.0% | |
| TGTTGAGTTTCTATGAGTAT+TGG | + | tig0040873:2512-2531 | Msa1460370:intron | 30.0% | |
| GTTGAGTTTCTATGAGTATT+GGG | + | tig0040873:2513-2532 | Msa1460370:intron | 30.0% | |
| !!! | CATTTTTTTATTCAACCGCA+CGG | - | tig0040873:2623-2642 | Msa1460370:intergenic | 30.0% |
| GCAAAAAACTGCATTTGATT+CGG | - | tig0040873:2658-2677 | Msa1460370:intergenic | 30.0% | |
| !!! | GAATCAAATGCAGTTTTTTG+CGG | + | tig0040873:2657-2676 | Msa1460370:intron | 30.0% |
| AATATCAGACAACCTACTAA+GGG | - | tig0040873:2742-2761 | Msa1460370:intergenic | 30.0% | |
| !! | TGTCTATTTCTGCATTAGTT+TGG | + | tig0040873:2773-2792 | Msa1460370:intron | 30.0% |
| TCTTGCCTAAACAATATACA+GGG | - | tig0040873:2810-2829 | Msa1460370:intergenic | 30.0% | |
| !! | CATTTTATTTGCTTCCACTT+AGG | - | tig0040873:2854-2873 | Msa1460370:intergenic | 30.0% |
| ! | ATTTTCTTTTATCCACTGCA+AGG | - | tig0040873:3025-3044 | Msa1460370:intergenic | 30.0% |
| TTGCAGTGGATAAAAGAAAA+TGG | + | tig0040873:3024-3043 | Msa1460370:intron | 30.0% | |
| TGCAGTGGATAAAAGAAAAT+GGG | + | tig0040873:3025-3044 | Msa1460370:intron | 30.0% | |
| CAACATCGCAATCATATTAT+CGG | + | tig0040873:3246-3265 | Msa1460370:intron | 30.0% | |
| !!! | TTTTTTGAAGGGAATGCTTA+AGG | + | tig0040873:3295-3314 | Msa1460370:intron | 30.0% |
| ! | TGTCAGAGTTACTACAATTT+TGG | - | tig0040873:3429-3448 | Msa1460370:intergenic | 30.0% |
| TTAAGAATTGCAGAGAAGAA+AGG | + | tig0040873:3795-3814 | Msa1460370:intron | 30.0% | |
| TAAGAATTGCAGAGAAGAAA+GGG | + | tig0040873:3796-3815 | Msa1460370:intron | 30.0% | |
| ATACAAATACAATGTGCTCA+TGG | - | tig0040873:3934-3953 | Msa1460370:intergenic | 30.0% | |
| TTCTCTGGCAATAGAATTAA+AGG | + | tig0040873:4127-4146 | Msa1460370:CDS | 30.0% | |
| TCTCTGGCAATAGAATTAAA+GGG | + | tig0040873:4128-4147 | Msa1460370:CDS | 30.0% | |
| AAAAGTAAGAAGTTGAGAGA+AGG | - | tig0040873:4237-4256 | Msa1460370:intergenic | 30.0% | |
| !! | AAATTATTTCTATGACTCGC+TGG | + | tig0040873:4535-4554 | Msa1460370:CDS | 30.0% |
| !! | AATTATTTCTATGACTCGCT+GGG | + | tig0040873:4536-4555 | Msa1460370:CDS | 30.0% |
| GTTGAATTGTTTGAATTGCT+TGG | + | tig0040873:4591-4610 | Msa1460370:CDS | 30.0% | |
| ATTGTTTGAATTGCTTGGTT+TGG | + | tig0040873:4596-4615 | Msa1460370:CDS | 30.0% | |
| ! | GCATTTTCATCCAAATCTTT+AGG | - | tig0040873:4681-4700 | Msa1460370:intergenic | 30.0% |
| !!! | ATCTGGGTTTTGATTTTAAC+TGG | + | tig0040873:4725-4744 | Msa1460370:exon | 30.0% |
| !!! | TAAGATTGTGCTTTTTTCTG+TGG | + | tig0040873:4808-4827 | Msa1460370:three_prime_UTR | 30.0% |
| ! | AGAACCTGTATGTGAGATTT+TGG | - | tig0040873:606-625 | Msa1460370:intergenic | 35.0% |
| ! | TTCAAATTGCTGGTGTCAAA+GGG | - | tig0040873:636-655 | Msa1460370:intergenic | 35.0% |
| ! | ATTCAAATTGCTGGTGTCAA+AGG | - | tig0040873:637-656 | Msa1460370:intergenic | 35.0% |
| !! | TACAGAGTGTTGCTGTTAAA+GGG | + | tig0040873:698-717 | Msa1460370:intron | 35.0% |
| ! | GACTGGTTAACAACTCATTT+GGG | - | tig0040873:861-880 | Msa1460370:intergenic | 35.0% |
| ! | TGACTGGTTAACAACTCATT+TGG | - | tig0040873:862-881 | Msa1460370:intergenic | 35.0% |
| ATGAGTTGTTAACCAGTCAA+TGG | + | tig0040873:863-882 | Msa1460370:CDS | 35.0% | |
| !!! | AATGTGCTTTTGAAGCTTTG+TGG | + | tig0040873:889-908 | Msa1460370:CDS | 35.0% |
| TTGTGGCTGTTGTAAAATTG+AGG | + | tig0040873:906-925 | Msa1460370:CDS | 35.0% | |
| TCAATACACTTTCCTATTGC+AGG | + | tig0040873:987-1006 | Msa1460370:intron | 35.0% | |
| GTCTGTGAAACATTAGTTAG+TGG | + | tig0040873:1069-1088 | Msa1460370:CDS | 35.0% | |
| AAAATCATTCTCGGTGAAAG+AGG | - | tig0040873:1112-1131 | Msa1460370:intergenic | 35.0% | |
| ! | GCATATACGTACACTTTTCA+AGG | - | tig0040873:1254-1273 | Msa1460370:intergenic | 35.0% |
| TGCTTGTCTAGAAAATCAGA+TGG | + | tig0040873:1297-1316 | Msa1460370:CDS | 35.0% | |
| ! | TTCTCTCGGAAAGGTATATA+TGG | - | tig0040873:1522-1541 | Msa1460370:intergenic | 35.0% |
| TGACTTCTTCTAACTTCTCT+CGG | - | tig0040873:1536-1555 | Msa1460370:intergenic | 35.0% | |
| ATCATACAGCTGCTTCAATT+TGG | + | tig0040873:1688-1707 | Msa1460370:CDS | 35.0% | |
| TGGTTGTTATAGCAGATATG+TGG | + | tig0040873:1708-1727 | Msa1460370:CDS | 35.0% | |
| TATAGCAGATATGTGGTATC+AGG | + | tig0040873:1715-1734 | Msa1460370:CDS | 35.0% | |
| TATCGCATTTCCTGTATTGT+TGG | - | tig0040873:1891-1910 | Msa1460370:intergenic | 35.0% | |
| ! | GAAAGGCAATACCTTTAAAG+TGG | - | tig0040873:1926-1945 | Msa1460370:intergenic | 35.0% |
| AATGGCACATTCAAAAGATC+TGG | + | tig0040873:1984-2003 | Msa1460370:intron | 35.0% | |
| ! | TATTTTCACGTATGGTATGG+GGG | + | tig0040873:2037-2056 | Msa1460370:intron | 35.0% |
| !! | GACAAGGTATTTTTGAAAGC+AGG | - | tig0040873:2164-2183 | Msa1460370:intergenic | 35.0% |
| CGTGCGGTTGAATAAAAAAA+TGG | + | tig0040873:2621-2640 | Msa1460370:intron | 35.0% | |
| !! | CATTTGATTCGGATGTAATC+AGG | - | tig0040873:2647-2666 | Msa1460370:intergenic | 35.0% |
| !!! | AATGCAGTTTTTTGCGGTTT+CGG | + | tig0040873:2663-2682 | Msa1460370:intron | 35.0% |
| CAAATAGAAAAACCGTGAAC+CGG | - | tig0040873:2700-2719 | Msa1460370:intergenic | 35.0% | |
| GAATATCAGACAACCTACTA+AGG | - | tig0040873:2743-2762 | Msa1460370:intergenic | 35.0% | |
| !! | CTATTTCTGCATTAGTTTGG+CGG | + | tig0040873:2776-2795 | Msa1460370:intron | 35.0% |
| AGTACCCCTGTATATTGTTT+AGG | + | tig0040873:2802-2821 | Msa1460370:intron | 35.0% | |
| CTTGCCTAAACAATATACAG+GGG | - | tig0040873:2809-2828 | Msa1460370:intergenic | 35.0% | |
| CTCTTGCCTAAACAATATAC+AGG | - | tig0040873:2811-2830 | Msa1460370:intergenic | 35.0% | |
| TTGTTTAGGCAAGAGATGTT+TGG | + | tig0040873:2816-2835 | Msa1460370:intron | 35.0% | |
| ! | TAAACTTTTCTTCCTTGCAG+TGG | + | tig0040873:3010-3029 | Msa1460370:intron | 35.0% |
| CAATGAGAATTGTTGTACGA+TGG | - | tig0040873:3201-3220 | Msa1460370:intergenic | 35.0% | |
| CGATAATATGATTGCGATGT+TGG | - | tig0040873:3248-3267 | Msa1460370:intergenic | 35.0% | |
| ! | TCATATTATCGGCTAAAGCA+TGG | + | tig0040873:3257-3276 | Msa1460370:intron | 35.0% |
| ! | CATATTATCGGCTAAAGCAT+GGG | + | tig0040873:3258-3277 | Msa1460370:intron | 35.0% |
| AAACCTTATCTCACTAAGTG+GGG | - | tig0040873:3379-3398 | Msa1460370:intergenic | 35.0% | |
| CAAACCTTATCTCACTAAGT+GGG | - | tig0040873:3380-3399 | Msa1460370:intergenic | 35.0% | |
| CATGACTCATGTGAATACAT+GGG | - | tig0040873:3521-3540 | Msa1460370:intergenic | 35.0% | |
| ACATGACTCATGTGAATACA+TGG | - | tig0040873:3522-3541 | Msa1460370:intergenic | 35.0% | |
| AGAATCGTATAAGCTGAACT+TGG | + | tig0040873:3696-3715 | Msa1460370:intron | 35.0% | |
| ! | AATGTACAGAAGTGTGAGAT+AGG | + | tig0040873:3757-3776 | Msa1460370:intron | 35.0% |
| ! | GTGGCATTAAGCATTGTTAT+CGG | - | tig0040873:3856-3875 | Msa1460370:intergenic | 35.0% |
| GAAATGAAGGGGTAAAATAG+TGG | - | tig0040873:3875-3894 | Msa1460370:intergenic | 35.0% | |
| AAAACAGCAGCACAAAAAGT+TGG | - | tig0040873:4104-4123 | Msa1460370:intergenic | 35.0% | |
| !! | AACTTTTTGTGCTGCTGTTT+TGG | + | tig0040873:4103-4122 | Msa1460370:CDS | 35.0% |
| TTAAGAATCACCTTAGGGTA+CGG | - | tig0040873:4269-4288 | Msa1460370:intergenic | 35.0% | |
| TAACCACTTGCAAAACAGAT+AGG | + | tig0040873:4342-4361 | Msa1460370:intron | 35.0% | |
| ! | TACTCTTTTTGCTTGCTTTG+TGG | + | tig0040873:4380-4399 | Msa1460370:intron | 35.0% |
| !!! | AGACGTGCTTTTTCAATAGC+AGG | - | tig0040873:447-466 | Msa0269600:intergenic | 40.0% |
| ! | GAAAAAGCACGTCTTTATCG+TGG | + | tig0040873:453-472 | Msa1460370:CDS | 40.0% |
| ACGCATCTCCATATCTAAAG+TGG | + | tig0040873:521-540 | Msa1460370:CDS | 40.0% | |
| GCATCCAAAATCTCACATAC+AGG | + | tig0040873:599-618 | Msa1460370:CDS | 40.0% | |
| !! | GTACAGAGTGTTGCTGTTAA+AGG | + | tig0040873:697-716 | Msa1460370:intron | 40.0% |
| AAGCACATTTCTCCATTGAC+TGG | - | tig0040873:878-897 | Msa1460370:intergenic | 40.0% | |
| GACTATTCTGTTGACAACAG+AGG | + | tig0040873:1189-1208 | Msa1460370:CDS | 40.0% | |
| AGTGTACGTATATGCTCTGT+AGG | + | tig0040873:1259-1278 | Msa1460370:CDS | 40.0% | |
| ACGTATATGCTCTGTAGGAT+TGG | + | tig0040873:1264-1283 | Msa1460370:CDS | 40.0% | |
| CTTGCTACCAATTTAGTTGG+CGG | + | tig0040873:1402-1421 | Msa1460370:CDS | 40.0% | |
| TTGCTACCAATTTAGTTGGC+GGG | + | tig0040873:1403-1422 | Msa1460370:CDS | 40.0% | |
| ACAAATCCCGCCAACTAAAT+TGG | - | tig0040873:1412-1431 | Msa1460370:intergenic | 40.0% | |
| TCTTCTAACTTCTCTCGGAA+AGG | - | tig0040873:1531-1550 | Msa1460370:intergenic | 40.0% | |
| GTTAGAAGAAGTCATTCCGA+AGG | + | tig0040873:1542-1561 | Msa1460370:CDS | 40.0% | |
| ! | CATTTTGCATCTGCTTCCTT+CGG | - | tig0040873:1561-1580 | Msa1460370:intergenic | 40.0% |
| GAAGGAAGCAGATGCAAAAT+GGG | + | tig0040873:1560-1579 | Msa1460370:CDS | 40.0% | |
| !! | TTTGAAGAGGGTATCACTCT+CGG | + | tig0040873:1771-1790 | Msa1460370:CDS | 40.0% |
| ATATACTCCCTGAGCATTCT+TGG | - | tig0040873:1841-1860 | Msa1460370:intergenic | 40.0% | |
| AGTCATCGTACCCACTTTAA+AGG | + | tig0040873:1912-1931 | Msa1460370:CDS | 40.0% | |
| !! | TCTAAAGCACTGCTTAGGAA+AGG | - | tig0040873:1943-1962 | Msa1460370:intergenic | 40.0% |
| AAATTATGGGGGCAAGTAGA+AGG | - | tig0040873:2085-2104 | Msa1460370:intergenic | 40.0% | |
| GCTATAATCAGTTGGCTACA+AGG | + | tig0040873:2105-2124 | Msa1460370:intron | 40.0% | |
| !!! | GTTTTGAGTTCATAGAGTCC+TGG | + | tig0040873:2186-2205 | Msa1460370:intron | 40.0% |
| CAGGACTAACCTCCATATTA+AGG | - | tig0040873:2463-2482 | Msa1460370:intergenic | 40.0% | |
| !! | AGTTTCTATGAGTATTGGGC+TGG | + | tig0040873:2517-2536 | Msa1460370:intron | 40.0% |
| !! | GTTTCTATGAGTATTGGGCT+GGG | + | tig0040873:2518-2537 | Msa1460370:intron | 40.0% |
| GTTTCTCTTATGTTGCGGTT+TGG | + | tig0040873:2560-2579 | Msa1460370:intron | 40.0% | |
| !! | ATGTTGCGGTTTGGTTCATT+TGG | + | tig0040873:2569-2588 | Msa1460370:intron | 40.0% |
| ! | TTTTATTCAACCGCACGGTT+TGG | - | tig0040873:2618-2637 | Msa1460370:intergenic | 40.0% |
| !!! | AGTTTTTTGCGGTTTCGGTT+TGG | + | tig0040873:2668-2687 | Msa1460370:intron | 40.0% |
| !!! | GTTTTTTGCGGTTTCGGTTT+GGG | + | tig0040873:2669-2688 | Msa1460370:intron | 40.0% |
| ! | CGGTTCACGGTTTTTCTATT+TGG | + | tig0040873:2698-2717 | Msa1460370:intron | 40.0% |
| !!! | CAGTTTTGAACACCCTTAGT+AGG | + | tig0040873:2727-2746 | Msa1460370:intron | 40.0% |
| CAGAAATAGACAGCATGAAG+AGG | - | tig0040873:2765-2784 | Msa1460370:intergenic | 40.0% | |
| TGCTTCCACTTAGGTATCAA+GGG | - | tig0040873:2845-2864 | Msa1460370:intergenic | 40.0% | |
| TTGCTTCCACTTAGGTATCA+AGG | - | tig0040873:2846-2865 | Msa1460370:intergenic | 40.0% | |
| GACAAACAAATCGCATGTTG+TGG | - | tig0040873:3153-3172 | Msa1460370:intergenic | 40.0% | |
| ATTCCCCACTTAGTGAGATA+AGG | + | tig0040873:3373-3392 | Msa1460370:intron | 40.0% | |
| CCAAACCTTATCTCACTAAG+TGG | - | tig0040873:3381-3400 | Msa1460370:intergenic | 40.0% | |
| CCACTTAGTGAGATAAGGTT+TGG | + | tig0040873:3378-3397 | Msa1460370:intron | 40.0% | |
| AGTCCAGATATTCACGAAGA+GGG | + | tig0040873:3826-3845 | Msa1460370:intron | 40.0% | |
| ATTCCCTCTTCGTGAATATC+TGG | - | tig0040873:3832-3851 | Msa1460370:intergenic | 40.0% | |
| ! | TCTGTTCGCGCTTTCTATTT+TGG | + | tig0040873:3904-3923 | Msa1460370:intron | 40.0% |
| CATACAGTTTATGAGTCGTC+TGG | - | tig0040873:3978-3997 | Msa1460370:intergenic | 40.0% | |
| CATGCTGGTATTGCAATACT+TGG | + | tig0040873:4173-4192 | Msa1460370:CDS | 40.0% | |
| ! | GAACCTATCTGTTTTGCAAG+TGG | - | tig0040873:4348-4367 | Msa1460370:intergenic | 40.0% |
| ! | GCTTTTCGAATCTGGTTAAC+AGG | - | tig0040873:4438-4457 | Msa1460370:intergenic | 40.0% |
| ! | CAAGATTTCCATTTTGCAGG+AGG | - | tig0040873:4485-4504 | Msa1460370:intergenic | 40.0% |
| ! | CCACAAGATTTCCATTTTGC+AGG | - | tig0040873:4488-4507 | Msa1460370:intergenic | 40.0% |
| CCTGCAAAATGGAAATCTTG+TGG | + | tig0040873:4485-4504 | Msa1460370:CDS | 40.0% | |
| !! | GTTTGAATTGCTTGGTTTGG+AGG | + | tig0040873:4599-4618 | Msa1460370:CDS | 40.0% |
| ATCTTTAGGCTTCTTAGCGT+TGG | - | tig0040873:4667-4686 | Msa1460370:intergenic | 40.0% | |
| CGCTAAGAAGCCTAAAGATT+TGG | + | tig0040873:4668-4687 | Msa1460370:CDS | 40.0% | |
| CAAACCTAGATTTAGCGTGT+GGG | + | tig0040873:4750-4769 | Msa1460370:three_prime_UTR | 40.0% | |
| AGCACGTCTTTATCGTGGAA+AGG | + | tig0040873:458-477 | Msa1460370:CDS | 45.0% | |
| GCACGTCTTTATCGTGGAAA+GGG | + | tig0040873:459-478 | Msa1460370:CDS | 45.0% | |
| TGTAAGGAGAGGATCTGCAT+TGG | + | tig0040873:822-841 | Msa1460370:CDS | 45.0% | |
| ! | AGAGGATCTGCATTGGCAAT+AGG | + | tig0040873:829-848 | Msa1460370:CDS | 45.0% |
| CTTCAGCATCTCTTTCCTCA+GGG | - | tig0040873:1017-1036 | Msa1460370:intergenic | 45.0% | |
| GTTGACAACAGAGGTGATGT+AGG | + | tig0040873:1198-1217 | Msa1460370:CDS | 45.0% | |
| ACAGAGGTGATGTAGGTTCT+TGG | + | tig0040873:1205-1224 | Msa1460370:CDS | 45.0% | |
| CAGAGGTGATGTAGGTTCTT+GGG | + | tig0040873:1206-1225 | Msa1460370:CDS | 45.0% | |
| ATCAGTCAAAGGTTGCACTG+CGG | - | tig0040873:1337-1356 | Msa1460370:intergenic | 45.0% | |
| TAAGCAAGCTGTGGAGAAGA+TGG | + | tig0040873:1431-1450 | Msa1460370:CDS | 45.0% | |
| CGAAGGAAGCAGATGCAAAA+TGG | + | tig0040873:1559-1578 | Msa1460370:CDS | 45.0% | |
| GAAGCAGCTGTATGATGTGT+GGG | - | tig0040873:1684-1703 | Msa1460370:intergenic | 45.0% | |
| TGAAGCAGCTGTATGATGTG+TGG | - | tig0040873:1685-1704 | Msa1460370:intergenic | 45.0% | |
| ACCCTAATCCAAGAATGCTC+AGG | + | tig0040873:1830-1849 | Msa1460370:CDS | 45.0% | |
| CCCTGAGCATTCTTGGATTA+GGG | - | tig0040873:1834-1853 | Msa1460370:intergenic | 45.0% | |
| CCCTAATCCAAGAATGCTCA+GGG | + | tig0040873:1831-1850 | Msa1460370:CDS | 45.0% | |
| TCCCTGAGCATTCTTGGATT+AGG | - | tig0040873:1835-1854 | Msa1460370:intergenic | 45.0% | |
| TGTATTGTTGGAGAACCCAC+AGG | - | tig0040873:1879-1898 | Msa1460370:intergenic | 45.0% | |
| TGTGGGTTCTCCAACAATAC+AGG | + | tig0040873:1878-1897 | Msa1460370:CDS | 45.0% | |
| AGTTGGCTACAAGGTAAGAC+TGG | + | tig0040873:2114-2133 | Msa1460370:intron | 45.0% | |
| GCTTCCACTTAGGTATCAAG+GGG | - | tig0040873:2844-2863 | Msa1460370:intergenic | 45.0% | |
| GAGTCCAGATATTCACGAAG+AGG | + | tig0040873:3825-3844 | Msa1460370:intron | 45.0% | |
| CAGTTTATGAGTCGTCTGGA+TGG | - | tig0040873:3974-3993 | Msa1460370:intergenic | 45.0% | |
| !!! | TGCTGCTGTTTTGGATTCTC+TGG | + | tig0040873:4112-4131 | Msa1460370:CDS | 45.0% |
| TGCAATACCAGCATGCAACT+TGG | - | tig0040873:4168-4187 | Msa1460370:intergenic | 45.0% | |
| TCTTGTTCATCCGTACCCTA+AGG | + | tig0040873:4256-4275 | Msa1460370:CDS | 45.0% | |
| AAGGTAGACATGTTCAGCTG+AGG | - | tig0040873:4460-4479 | Msa1460370:intergenic | 45.0% | |
| TACCTTGTCCTCCTGCAAAA+TGG | + | tig0040873:4474-4493 | Msa1460370:CDS | 45.0% | |
| ! | TTCCATTTTGCAGGAGGACA+AGG | - | tig0040873:4479-4498 | Msa1460370:intergenic | 45.0% |
| !! | TGAATTGCTTGGTTTGGAGG+TGG | + | tig0040873:4602-4621 | Msa1460370:CDS | 45.0% |
| !! | GAATTGCTTGGTTTGGAGGT+GGG | + | tig0040873:4603-4622 | Msa1460370:CDS | 45.0% |
| !! | AATTGCTTGGTTTGGAGGTG+GGG | + | tig0040873:4604-4623 | Msa1460370:CDS | 45.0% |
| TCATCTCTCAAGAACGGTGA+TGG | + | tig0040873:4627-4646 | Msa1460370:CDS | 45.0% | |
| TCCTCATTAGTCGAGTCATC+TGG | + | tig0040873:4708-4727 | Msa1460370:CDS | 45.0% | |
| CCTCATTAGTCGAGTCATCT+GGG | + | tig0040873:4709-4728 | Msa1460370:CDS | 45.0% | |
| GCAAACCTAGATTTAGCGTG+TGG | + | tig0040873:4749-4768 | Msa1460370:three_prime_UTR | 45.0% | |
| TTCACCCACACGCTAAATCT+AGG | - | tig0040873:4757-4776 | Msa1460370:intergenic | 45.0% | |
| !! | TTAAAAAATTATTAATGATT+GGG | - | tig0040873:2229-2248 | Msa1460370:intergenic | 5.0% |
| !! | ATTAAAAAATTATTAATGAT+TGG | - | tig0040873:2230-2249 | Msa1460370:intergenic | 5.0% |
| CGTCTTTATCGTGGAAAGGG+AGG | + | tig0040873:462-481 | Msa1460370:CDS | 50.0% | |
| ! | GAGTGTTGCTGTTAAAGGGC+TGG | + | tig0040873:702-721 | Msa1460370:intron | 50.0% |
| CTGATCCAAATGCCGCTGTA+AGG | + | tig0040873:806-825 | Msa1460370:CDS | 50.0% | |
| TGCAGATCCTCTCCTTACAG+CGG | - | tig0040873:821-840 | Msa1460370:intergenic | 50.0% | |
| ! | CCTCAGGGTTTTCCTGCAAT+AGG | - | tig0040873:1002-1021 | Msa1460370:intergenic | 50.0% |
| CCTATTGCAGGAAAACCCTG+AGG | + | tig0040873:999-1018 | Msa1460370:intron | 50.0% | |
| GCTTCAGCATCTCTTTCCTC+AGG | - | tig0040873:1018-1037 | Msa1460370:intergenic | 50.0% | |
| GCGCGAGTAAATGCTGTCAA+AGG | + | tig0040873:1036-1055 | Msa1460370:CDS | 50.0% | |
| TGTAGGTTCTTGGGTTCGTG+AGG | + | tig0040873:1215-1234 | Msa1460370:CDS | 50.0% | |
| GTTCGTGAGGCTGCATTACA+TGG | + | tig0040873:1228-1247 | Msa1460370:CDS | 50.0% | |
| ! | CTCTGTAGGATTGGCAGATC+AGG | + | tig0040873:1273-1292 | Msa1460370:CDS | 50.0% |
| CGGGATTTGTAAGCAAGCTG+TGG | + | tig0040873:1422-1441 | Msa1460370:CDS | 50.0% | |
| TGCTGTCAGTTGACATCCTG+TGG | + | tig0040873:1860-1879 | Msa1460370:CDS | 50.0% | |
| GCTGTCAGTTGACATCCTGT+GGG | + | tig0040873:1861-1880 | Msa1460370:CDS | 50.0% | |
| TTCACGTATGGTATGGGGGT+TGG | + | tig0040873:2041-2060 | Msa1460370:intron | 50.0% | |
| ! | AAGGTAAGACTGGTCCCCAT+AGG | + | tig0040873:2124-2143 | Msa1460370:intron | 50.0% |
| TCCTTCAACTGCGACCTATG+GGG | - | tig0040873:2141-2160 | Msa1460370:intergenic | 50.0% | |
| GTCCTTCAACTGCGACCTAT+GGG | - | tig0040873:2142-2161 | Msa1460370:intergenic | 50.0% | |
| !! | GGTTAAAGAGAGTGCTGACC+AGG | - | tig0040873:2207-2226 | Msa1460370:intergenic | 50.0% |
| ACAAACCGAACCAAACCGTG+CGG | + | tig0040873:2605-2624 | Msa1460370:intron | 50.0% | |
| !! | TTCAACCGCACGGTTTGGTT+CGG | - | tig0040873:2613-2632 | Msa1460370:intergenic | 50.0% |
| !! | GGTTTCGGTTTGGGTTGATC+CGG | + | tig0040873:2678-2697 | Msa1460370:intron | 50.0% |
| !! | GTTTGGGTTGATCCGGTTCA+CGG | + | tig0040873:2685-2704 | Msa1460370:intron | 50.0% |
| GGTACCCCTTGATACCTAAG+TGG | + | tig0040873:2837-2856 | Msa1460370:intron | 50.0% | |
| ! | TCGGCTAAAGCATGGGCTAA+AGG | + | tig0040873:3265-3284 | Msa1460370:intron | 50.0% |
| ATGAGTCGTCTGGATGGCAT+GGG | - | tig0040873:3968-3987 | Msa1460370:intergenic | 50.0% | |
| TATGAGTCGTCTGGATGGCA+TGG | - | tig0040873:3969-3988 | Msa1460370:intergenic | 50.0% | |
| GACTTCTCCAAGTTGCATGC+TGG | + | tig0040873:4158-4177 | Msa1460370:CDS | 50.0% | |
| !! | GCTCTCGTATGGATTGGTTC+TGG | - | tig0040873:4215-4234 | Msa1460370:intergenic | 50.0% |
| GAGAAGGCTCTCGTATGGAT+TGG | - | tig0040873:4221-4240 | Msa1460370:intergenic | 50.0% | |
| GTTGAGAGAAGGCTCTCGTA+TGG | - | tig0040873:4226-4245 | Msa1460370:intergenic | 50.0% | |
| ! | CAGCTGAGGCTTTTCGAATC+TGG | - | tig0040873:4446-4465 | Msa1460370:intergenic | 50.0% |
| ACTCGCTGGGATGATAGCAT+GGG | + | tig0040873:4549-4568 | Msa1460370:CDS | 50.0% | |
| GTGGGGTCATCTCTCAAGAA+CGG | + | tig0040873:4621-4640 | Msa1460370:CDS | 50.0% | |
| CCCAGATGACTCGACTAATG+AGG | - | tig0040873:4712-4731 | Msa1460370:intergenic | 50.0% | |
| GGGTGAACGTTTGACCAACA+TGG | + | tig0040873:4770-4789 | Msa1460370:three_prime_UTR | 50.0% | |
| CCTCTCCTTACAGCGGCATT+TGG | - | tig0040873:814-833 | Msa1460370:intergenic | 55.0% | |
| CCAAATGCCGCTGTAAGGAG+AGG | + | tig0040873:811-830 | Msa1460370:CDS | 55.0% | |
| TCCCCATAGGTCGCAGTTGA+AGG | + | tig0040873:2137-2156 | Msa1460370:intron | 55.0% | |
| GGTCCTTCAACTGCGACCTA+TGG | - | tig0040873:2143-2162 | Msa1460370:intergenic | 55.0% | |
| !! | GCACGGTTTGGTTCGGTTTG+TGG | - | tig0040873:2606-2625 | Msa1460370:intergenic | 55.0% |
| TGAGTCGTCTGGATGGCATG+GGG | - | tig0040873:3967-3986 | Msa1460370:intergenic | 55.0% | |
| GACTCGCTGGGATGATAGCA+TGG | + | tig0040873:4548-4567 | Msa1460370:CDS | 55.0% | |
| !! | AGAACGGTGATGGAGCAGCA+AGG | + | tig0040873:4637-4656 | Msa1460370:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040873 | gene | 408 | 4904 | 408 | ID=Msa1460370;Name=Msa1460370 |
| tig0040873 | mRNA | 408 | 4904 | 408 | ID=Msa1460370-mRNA-1;Parent=Msa1460370;Name=Msa1460370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.85|1|1|1|7|167|601 |
| tig0040873 | exon | 408 | 620 | 408 | ID=Msa1460370-mRNA-1:exon:22686;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 703 | 927 | 703 | ID=Msa1460370-mRNA-1:exon:22687;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 1009 | 1584 | 1009 | ID=Msa1460370-mRNA-1:exon:22688;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 1664 | 1933 | 1664 | ID=Msa1460370-mRNA-1:exon:22689;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 2428 | 2472 | 2428 | ID=Msa1460370-mRNA-1:exon:22690;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 4092 | 4277 | 4092 | ID=Msa1460370-mRNA-1:exon:22691;Parent=Msa1460370-mRNA-1 |
| tig0040873 | exon | 4447 | 4904 | 4447 | ID=Msa1460370-mRNA-1:exon:22692;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 408 | 620 | 408 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 703 | 927 | 703 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 1009 | 1584 | 1009 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 1664 | 1933 | 1664 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 2428 | 2472 | 2428 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 4092 | 4277 | 4092 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | CDS | 4447 | 4737 | 4447 | ID=Msa1460370-mRNA-1:cds;Parent=Msa1460370-mRNA-1 |
| tig0040873 | three_prime_UTR | 4738 | 4904 | 4738 | ID=Msa1460370-mRNA-1:three_prime_utr;Parent=Msa1460370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
