AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1232740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232740 MtrunA17_Chr8g0341941 96.639 238 8 0 1 238 1 238 2.70e-167 461
Msa1232740 MtrunA17_Chr1g0151621 59.556 225 87 2 14 238 12 232 5.39e-94 276
Msa1232740 MtrunA17_Chr3g0102821 60.116 173 69 0 66 238 36 208 6.54e-73 221
Msa1232740 MtrunA17_Chr4g0076551 59.538 173 70 0 66 238 37 209 9.16e-73 221
Msa1232740 MtrunA17_Chr5g0446931 57.065 184 79 0 55 238 25 208 1.12e-72 221
Msa1232740 MtrunA17_Chr2g0290751 56.627 166 72 0 72 237 45 210 1.97e-66 204
Msa1232740 MtrunA17_Chr8g0388331 51.741 201 88 1 38 238 2 193 5.78e-66 203
Msa1232740 MtrunA17_Chr2g0290761 56.627 166 72 0 72 237 45 210 1.20e-65 202
Msa1232740 MtrunA17_Chr8g0346911 53.226 186 87 0 52 237 30 215 2.55e-65 202
Msa1232740 MtrunA17_Chr4g0055421 48.756 201 94 1 38 238 2 193 2.86e-65 201
Msa1232740 MtrunA17_Chr2g0290771 55.488 164 73 0 74 237 9 172 6.80e-65 199
Msa1232740 MtrunA17_Chr2g0290781 51.124 178 84 1 57 234 35 209 8.81e-62 193
Msa1232740 MtrunA17_Chr4g0063121 42.683 164 74 1 75 238 7 150 1.59e-42 143
Msa1232740 MtrunA17_Chr3g0126811 52.846 123 50 1 38 160 2 116 9.31e-34 118
Msa1232740 MtrunA17_Chr3g0126801 59.756 82 33 0 157 238 6 87 4.38e-31 111
Msa1232740 MtrunA17_Chr5g0399921 47.458 118 52 1 38 155 2 109 8.96e-29 105
Msa1232740 MtrunA17_Chr8g0388321 45.528 123 42 2 61 174 58 164 2.28e-24 95.5
Msa1232740 MtrunA17_Chr8g0388311 51.613 62 30 0 177 238 1 62 6.42e-16 70.5
Msa1232740 MtrunA17_Chr5g0399931 50.000 62 31 0 177 238 1 62 2.15e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232740 AT4G33000.2 61.765 238 82 2 1 238 1 229 1.33e-99 290
Msa1232740 AT4G33000.1 62.174 230 79 1 9 238 18 239 7.20e-99 288
Msa1232740 AT4G33000.4 60.697 201 70 2 1 201 1 192 1.51e-79 237
Msa1232740 AT4G33000.6 60.697 201 70 2 1 201 1 192 1.51e-79 237
Msa1232740 AT4G33000.5 61.000 200 69 2 1 200 1 191 5.10e-79 237
Msa1232740 AT4G26570.1 61.850 173 66 0 66 238 36 208 1.15e-74 226
Msa1232740 AT5G55990.1 53.922 204 85 1 35 238 14 208 7.68e-74 224
Msa1232740 AT5G55990.2 53.922 204 85 1 35 238 14 208 7.68e-74 224
Msa1232740 AT4G26570.2 60.452 177 66 1 66 238 36 212 1.50e-72 221
Msa1232740 AT5G24270.4 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1232740 AT5G24270.1 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1232740 AT5G24270.2 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1232740 AT1G64480.4 54.011 187 86 0 52 238 11 197 4.08e-68 208
Msa1232740 AT1G64480.2 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1232740 AT1G64480.3 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1232740 AT1G64480.1 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1232740 AT5G47100.1 50.249 201 91 1 38 238 2 193 8.96e-68 208
Msa1232740 AT4G17615.4 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1232740 AT4G17615.1 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1232740 AT4G17615.5 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1232740 AT5G24270.5 60.000 165 66 0 74 238 8 172 9.11e-67 205
Msa1232740 AT4G17615.3 51.244 201 89 1 38 238 2 193 1.84e-66 206
Msa1232740 AT4G16350.2 53.757 173 76 1 66 238 34 202 4.07e-61 192
Msa1232740 AT4G16350.1 53.757 173 76 1 66 238 34 202 4.07e-61 192
Msa1232740 AT4G33000.3 58.710 155 55 2 1 155 1 146 1.05e-56 178
Msa1232740 AT5G24270.3 54.861 144 65 0 95 238 7 150 1.19e-51 166
Msa1232740 AT4G17615.2 55.000 140 63 0 99 238 12 151 2.94e-50 162
Msa1232740 AT5G47100.2 46.061 165 80 1 38 202 2 157 5.59e-48 156
Msa1232740 AT4G26560.1 46.552 174 80 3 78 238 23 196 4.88e-47 155
Msa1232740 AT4G01420.2 43.820 178 100 0 61 238 15 192 7.45e-47 154
Msa1232740 AT4G01420.1 43.820 178 100 0 61 238 15 192 1.04e-46 154

Find 33 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTACCTTATCAATAA+TGG 0.205420 8_2:-9326526 None:intergenic
CTTTCATCCTTATACTCCTT+TGG 0.311172 8_2:+9325865 Msa1232740:CDS
CATGCCACATTCTGACAAAA+TGG 0.352911 8_2:-9326478 None:intergenic
CCTTGAATCCATTATTGATA+AGG 0.378005 8_2:+9326518 Msa1232740:CDS
CCTTATCAATAATGGATTCA+AGG 0.388885 8_2:-9326518 None:intergenic
TTTGCAATGCTGAGTTGATA+TGG 0.393856 8_2:+9323101 Msa1232740:exon
ATGGTGTTCATTCCATTGAT+TGG 0.438204 8_2:+9323279 Msa1232740:CDS
GAATGGTGTTATAGAATTTG+AGG 0.442220 8_2:+9325820 Msa1232740:CDS
AGTGGAAAGCATTTGTCATT+CGG 0.446196 8_2:+9326671 Msa1232740:CDS
TGATATAAGAACCCCGAAAG+TGG 0.484350 8_2:+9322996 None:intergenic
GGAAGAAAGCTCTTTATCTC+TGG 0.495722 8_2:+9323122 Msa1232740:CDS
GCTTCAGCTATACCAATCAA+TGG 0.499513 8_2:-9323291 None:intergenic
AAAATGCTTATACCCTATCA+AGG 0.515442 8_2:-9324974 None:intergenic
ATAAGATCAGTAAAGAAGAG+TGG 0.521942 8_2:+9326653 Msa1232740:CDS
CTTATCATCTTTGTCAGCAT+CGG 0.523718 8_2:-9326635 None:intergenic
GCACTATTGAAGACCTCAGT+TGG 0.527215 8_2:+9324939 Msa1232740:CDS
GTCATGTGCCTCAAGAGTGA+TGG 0.534046 8_2:-9326697 None:intergenic
TTGTATGACTTGAGACAGAC+TGG 0.534466 8_2:+9326017 Msa1232740:CDS
ATTGCAAAACTTCTTCCTCA+AGG 0.544908 8_2:-9323086 None:intergenic
TAGGGATCGAGGTTGACGAT+TGG 0.545131 8_2:+9323243 Msa1232740:intron
TTGCAAAACTTCTTCCTCAA+GGG 0.558766 8_2:-9323085 None:intergenic
TCATGTGCCTCAAGAGTGAT+GGG 0.565189 8_2:-9326696 None:intergenic
ACTTCTTCCTCAAGGGATCA+CGG 0.570205 8_2:-9323078 None:intergenic
GATTGGAGAAACACTGTGTA+TGG 0.578297 8_2:+9323260 Msa1232740:CDS
TTTCCAGGTTCGGGAAATGG+TGG 0.580933 8_2:+9326452 Msa1232740:intron
TAATCATTCATTAGGGATCG+AGG 0.609654 8_2:+9323232 Msa1232740:intron
AAGTGCGAGAATCTCTTCGA+AGG 0.630613 8_2:-9323397 None:intergenic
TTCGGAACCCATCACTCTTG+AGG 0.631350 8_2:+9326689 Msa1232740:CDS
AGTTAATGTGAATGAAATTG+AGG 0.637849 8_2:+9323549 Msa1232740:intron
TATGAAGGAAGAGCTTACAT+TGG 0.647597 8_2:+9324917 Msa1232740:intron
ATTCTGACCGTGATCCCTTG+AGG 0.648094 8_2:+9323071 Msa1232740:five_prime_UTR
AGTTGTTCAATCATCGACGA+TGG 0.653713 8_2:+9323598 Msa1232740:CDS
GAAAAGATTCTTGCCAACTG+AGG 0.667115 8_2:-9324952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATAAAAAGCTAA+TGG - chr8_2:9323990-9324009 None:intergenic 10.0%
!!! TTTATTTTTGTCTTTTTCAA+TGG - chr8_2:9323052-9323071 None:intergenic 15.0%
!! TAAATAAATAGAAGTTTAAC+AGG - chr8_2:9324203-9324222 None:intergenic 15.0%
!! TGTTAAATTAATTAAGTGAT+TGG + chr8_2:9324451-9324470 Msa1232740:intron 15.0%
!! AATAATAAATAAGGAGTAAA+CGG - chr8_2:9324658-9324677 None:intergenic 15.0%
!!! TGTACTGATAATAATAAATA+AGG - chr8_2:9324667-9324686 None:intergenic 15.0%
!! GTACTCAATTATAAATATAA+AGG - chr8_2:9325746-9325765 None:intergenic 15.0%
!!! AAAGATCAATTATATTTTCT+TGG + chr8_2:9325972-9325991 Msa1232740:intron 15.0%
!!! TTCCAAAAGTTTTAATAATT+TGG + chr8_2:9326158-9326177 Msa1232740:intron 15.0%
!!! TCCAAAAGTTTTAATAATTT+GGG + chr8_2:9326159-9326178 Msa1232740:intron 15.0%
!!! TATATTTTAAGTGACAAATA+TGG + chr8_2:9326187-9326206 Msa1232740:intron 15.0%
!!! ATATTTTAAGTGACAAATAT+GGG + chr8_2:9326188-9326207 Msa1232740:intron 15.0%
!!! TTTCTTTTTTTTTTTTTGGT+GGG - chr8_2:9326226-9326245 None:intergenic 15.0%
!!! TTTTCTTTTTTTTTTTTTGG+TGG - chr8_2:9326227-9326246 None:intergenic 15.0%
!! ACCAAAAAAAAAAAAAGAAA+AGG + chr8_2:9326226-9326245 Msa1232740:intron 15.0%
!! CCAAAAAAAAAAAAAGAAAA+GGG + chr8_2:9326227-9326246 Msa1232740:intron 15.0%
!!! ATCATTATTATTATTTTTGG+CGG + chr8_2:9326295-9326314 Msa1232740:intron 15.0%
!! TTAGTAAACATATAAGTATT+GGG - chr8_2:9326401-9326420 None:intergenic 15.0%
!! ATTAGTAAACATATAAGTAT+TGG - chr8_2:9326402-9326421 None:intergenic 15.0%
!!! TTTTTTTAAATGTTACCTAA+AGG - chr8_2:9326592-9326611 None:intergenic 15.0%
!! ATGATGATTATTGAATTTCT+CGG - chr8_2:9323182-9323201 None:intergenic 20.0%
!!! TTTGTTGTTAATCATTCATT+AGG + chr8_2:9323224-9323243 Msa1232740:intron 20.0%
!!! TTGTTGTTAATCATTCATTA+GGG + chr8_2:9323225-9323244 Msa1232740:intron 20.0%
!! TTAGTTAGTTAATTACTTTG+TGG - chr8_2:9323630-9323649 None:intergenic 20.0%
!!! AAATAAGTTGAAAATGTGTT+TGG - chr8_2:9323745-9323764 None:intergenic 20.0%
!! AAAAATAACTTATACACAAG+TGG - chr8_2:9323865-9323884 None:intergenic 20.0%
!! ATCAATTTCAAAATATGAGT+GGG - chr8_2:9324110-9324129 None:intergenic 20.0%
!! AAATATTTCAGAACATTACA+TGG - chr8_2:9324292-9324311 None:intergenic 20.0%
!!! TCATTTTTCACCAAATAATT+TGG - chr8_2:9324337-9324356 None:intergenic 20.0%
!!! AAGTCAATTTTTTATTTGCA+AGG + chr8_2:9325070-9325089 Msa1232740:intron 20.0%
!! ATTAAGATTGAATATGCTTT+GGG - chr8_2:9325229-9325248 None:intergenic 20.0%
!! AATTAAGATTGAATATGCTT+TGG - chr8_2:9325230-9325249 None:intergenic 20.0%
!!! TATTTGTATAAAAGTATCCA+AGG + chr8_2:9325591-9325610 Msa1232740:intron 20.0%
!!! ATTTGTATAAAAGTATCCAA+GGG + chr8_2:9325592-9325611 Msa1232740:intron 20.0%
!! AACGTCAAATAAAAAAGAAA+AGG - chr8_2:9325713-9325732 None:intergenic 20.0%
!! TTGTTTGTAAAAAATTACCT+AGG + chr8_2:9325772-9325791 Msa1232740:intron 20.0%
!!! ACCCAAATTATTAAAACTTT+TGG - chr8_2:9326163-9326182 None:intergenic 20.0%
!!! CCCTTTTCTTTTTTTTTTTT+TGG - chr8_2:9326230-9326249 None:intergenic 20.0%
!! AACAATTACCTTATCAATAA+TGG - chr8_2:9326529-9326548 None:intergenic 20.0%
!!! TTTGTCTTTTTCAATGGATT+TGG - chr8_2:9323046-9323065 None:intergenic 25.0%
! AGTTAATGTGAATGAAATTG+AGG + chr8_2:9323549-9323568 Msa1232740:intron 25.0%
! ATATGATAACAACATGACTT+TGG + chr8_2:9323782-9323801 Msa1232740:intron 25.0%
! GTAAAACAATAAGTTTCCAT+TGG - chr8_2:9324079-9324098 None:intergenic 25.0%
! TCAATTTCAAAATATGAGTG+GGG - chr8_2:9324109-9324128 None:intergenic 25.0%
! CATCAATTTCAAAATATGAG+TGG - chr8_2:9324111-9324130 None:intergenic 25.0%
!!! CACTCATATTTTGAAATTGA+TGG + chr8_2:9324109-9324128 Msa1232740:intron 25.0%
! AATGTAAAACTGAATTACAC+TGG + chr8_2:9324168-9324187 Msa1232740:intron 25.0%
!! AATTCCATCTTTTCATATTG+TGG + chr8_2:9324237-9324256 Msa1232740:intron 25.0%
! TGAATATCCTCCAAATTATT+TGG + chr8_2:9324324-9324343 Msa1232740:intron 25.0%
!! TTTTTCACCAAATAATTTGG+AGG - chr8_2:9324334-9324353 None:intergenic 25.0%
!! TATTTGGTGAAAAATGAATC+TGG + chr8_2:9324340-9324359 Msa1232740:intron 25.0%
! TAATCTTTAGTAGACTATCT+TGG + chr8_2:9324601-9324620 Msa1232740:intron 25.0%
! TAAAGACAAAAAACTGTGTT+TGG + chr8_2:9324807-9324826 Msa1232740:intron 25.0%
! CCTACTTGAATACAAAAATT+GGG - chr8_2:9325113-9325132 None:intergenic 25.0%
! TCCTACTTGAATACAAAAAT+TGG - chr8_2:9325114-9325133 None:intergenic 25.0%
!!! TTTTATTTTACAGATTCCCA+GGG - chr8_2:9325205-9325224 None:intergenic 25.0%
! TTAAGATTGAATATGCTTTG+GGG - chr8_2:9325228-9325247 None:intergenic 25.0%
! AGCATAAAAAACACGAAAAT+GGG - chr8_2:9325505-9325524 None:intergenic 25.0%
! AAGCATAAAAAACACGAAAA+TGG - chr8_2:9325506-9325525 None:intergenic 25.0%
!!! ATTTTCGTGTTTTTTATGCT+TGG + chr8_2:9325505-9325524 Msa1232740:intron 25.0%
! CTCTTTGATGAAAAAAAGAA+TGG + chr8_2:9325803-9325822 Msa1232740:CDS 25.0%
!! CAATCAATTTTCTTTTCCAA+AGG - chr8_2:9325884-9325903 None:intergenic 25.0%
! CTTATATGTTTACTAATGCT+CGG + chr8_2:9326405-9326424 Msa1232740:intron 25.0%
! TTGATAAGGTAATTGTTTGT+TGG + chr8_2:9326532-9326551 Msa1232740:intron 25.0%
! TTGTTTAAGTCTAATCCTTT+AGG + chr8_2:9326574-9326593 Msa1232740:intron 25.0%
! GATTCAAACTTTTCCACTTT+CGG - chr8_2:9323012-9323031 None:intergenic 30.0%
!!! CTTTTTCAATGGATTTGGAT+TGG - chr8_2:9323041-9323060 None:intergenic 30.0%
!! TCATCAGCTTTTGTTTGTTT+AGG + chr8_2:9323456-9323475 Msa1232740:intron 30.0%
! AAAAAGCAGAGGTTTTTCAT+TGG + chr8_2:9324140-9324159 Msa1232740:intron 30.0%
TAGTTGTTGGATCAATCTAT+TGG + chr8_2:9324410-9324429 Msa1232740:intron 30.0%
!! CAAAGGATTTTTCAACAACA+TGG - chr8_2:9324529-9324548 None:intergenic 30.0%
GTTGTTGAAAAATCCTTTGA+AGG + chr8_2:9324530-9324549 Msa1232740:intron 30.0%
! ATCCTTTGAAGGACTATTTA+TGG + chr8_2:9324541-9324560 Msa1232740:intron 30.0%
TAATCTATGAGGAGCTAATT+TGG + chr8_2:9324572-9324591 Msa1232740:intron 30.0%
TGATTCAGTCGATTAAAGAT+CGG - chr8_2:9324634-9324653 None:intergenic 30.0%
TCACATCATTTCATTGAAGT+TGG - chr8_2:9324720-9324739 None:intergenic 30.0%
TAACAACTTAGATTGTGATC+TGG + chr8_2:9324743-9324762 Msa1232740:intron 30.0%
AACAACTTAGATTGTGATCT+GGG + chr8_2:9324744-9324763 Msa1232740:intron 30.0%
! TTTTCATTTTCCCTCTATGA+AGG + chr8_2:9324902-9324921 Msa1232740:intron 30.0%
! CAAGAATCTTTTCCTTGATA+GGG + chr8_2:9324962-9324981 Msa1232740:CDS 30.0%
AAAATGCTTATACCCTATCA+AGG - chr8_2:9324977-9324996 None:intergenic 30.0%
! TTTTCTTGATCTCATTTGTG+AGG + chr8_2:9325035-9325054 Msa1232740:intron 30.0%
! CCCAATTTTTGTATTCAAGT+AGG + chr8_2:9325110-9325129 Msa1232740:intron 30.0%
GTGTGAACAAAATGAAAGTA+GGG - chr8_2:9325152-9325171 None:intergenic 30.0%
!!! GTTTTATTTTACAGATTCCC+AGG - chr8_2:9325206-9325225 None:intergenic 30.0%
! ATTTAAGACCTAAGTTTGTG+AGG - chr8_2:9325278-9325297 None:intergenic 30.0%
TAGGTCTTAAATTGTTGTGA+TGG + chr8_2:9325286-9325305 Msa1232740:intron 30.0%
TACTAAGAGAACAAAAAGCT+AGG - chr8_2:9325325-9325344 None:intergenic 30.0%
GCATAAAAAACACGAAAATG+GGG - chr8_2:9325504-9325523 None:intergenic 30.0%
!!! TTTTTTATGCTTGGATCCAA+GGG + chr8_2:9325514-9325533 Msa1232740:intron 30.0%
!! TATAAAAGTATCCAAGGGAA+TGG + chr8_2:9325597-9325616 Msa1232740:intron 30.0%
!! ATAAAAGTATCCAAGGGAAT+GGG + chr8_2:9325598-9325617 Msa1232740:intron 30.0%
!! GAATGGTGTTATAGAATTTG+AGG + chr8_2:9325820-9325839 Msa1232740:CDS 30.0%
!! TTCTTTTCCAAAGGAGTATA+AGG - chr8_2:9325875-9325894 None:intergenic 30.0%
!!! CTGTTTTAGTATCATCAGTA+TGG + chr8_2:9325946-9325965 Msa1232740:intron 30.0%
CACTAGAGCAATATTATTCT+AGG - chr8_2:9326084-9326103 None:intergenic 30.0%
CATTGAAGATGTACTAAACT+CGG + chr8_2:9326327-9326346 Msa1232740:intron 30.0%
!! CCTTATCAATAATGGATTCA+AGG - chr8_2:9326521-9326540 None:intergenic 30.0%
CCTTGAATCCATTATTGATA+AGG + chr8_2:9326518-9326537 Msa1232740:CDS 30.0%
ATAAGATCAGTAAAGAAGAG+TGG + chr8_2:9326653-9326672 Msa1232740:CDS 30.0%
TTGCAAAACTTCTTCCTCAA+GGG - chr8_2:9323088-9323107 None:intergenic 35.0%
ATTGCAAAACTTCTTCCTCA+AGG - chr8_2:9323089-9323108 None:intergenic 35.0%
!! TTTGCAATGCTGAGTTGATA+TGG + chr8_2:9323101-9323120 Msa1232740:exon 35.0%
TAATCATTCATTAGGGATCG+AGG + chr8_2:9323232-9323251 Msa1232740:intron 35.0%
ATGGTGTTCATTCCATTGAT+TGG + chr8_2:9323279-9323298 Msa1232740:CDS 35.0%
AACTTTACCAACCTCACAAA+TGG - chr8_2:9323715-9323734 None:intergenic 35.0%
AACATGACTTTGGCACTATT+TGG + chr8_2:9323792-9323811 Msa1232740:intron 35.0%
! GCTAAGCTCTAATAATCCAA+TGG + chr8_2:9324060-9324079 Msa1232740:intron 35.0%
TGGTATGAGATAAAAAGCAG+AGG + chr8_2:9324129-9324148 Msa1232740:intron 35.0%
!!! TAGCAGCATTTTGACTTCAA+AGG - chr8_2:9324368-9324387 None:intergenic 35.0%
CCAACAACTAACATTGTAGA+TGG - chr8_2:9324400-9324419 None:intergenic 35.0%
CCATCTACAATGTTAGTTGT+TGG + chr8_2:9324397-9324416 Msa1232740:intron 35.0%
!!! TTTTCGTTTTTGAGTTCTGC+CGG + chr8_2:9324482-9324501 Msa1232740:intron 35.0%
! TTTTCAACAACATGGATCCT+CGG - chr8_2:9324521-9324540 None:intergenic 35.0%
CACCATAAATAGTCCTTCAA+AGG - chr8_2:9324546-9324565 None:intergenic 35.0%
! TGGTGATGCTTTAATCTATG+AGG + chr8_2:9324561-9324580 Msa1232740:intron 35.0%
TATGAAGGAAGAGCTTACAT+TGG + chr8_2:9324917-9324936 Msa1232740:intron 35.0%
! GCAAGAATCTTTTCCTTGAT+AGG + chr8_2:9324961-9324980 Msa1232740:CDS 35.0%
TTGCAAGGAAAACACTTGTT+AGG + chr8_2:9325085-9325104 Msa1232740:intron 35.0%
GGTGTGAACAAAATGAAAGT+AGG - chr8_2:9325153-9325172 None:intergenic 35.0%
GAACATCATCTCATACAACT+GGG - chr8_2:9325469-9325488 None:intergenic 35.0%
AGAACATCATCTCATACAAC+TGG - chr8_2:9325470-9325489 None:intergenic 35.0%
!!! GTTTTTTATGCTTGGATCCA+AGG + chr8_2:9325513-9325532 Msa1232740:intron 35.0%
!! TAAAAGTATCCAAGGGAATG+GGG + chr8_2:9325599-9325618 Msa1232740:intron 35.0%
ATCAAAGAGATCAAACACCT+AGG - chr8_2:9325792-9325811 None:intergenic 35.0%
CTTTCATCCTTATACTCCTT+TGG + chr8_2:9325865-9325884 Msa1232740:CDS 35.0%
ACGAGAAGAAGTAAGTATCT+TGG + chr8_2:9326049-9326068 Msa1232740:intron 35.0%
CGAGTTTAGTACATCTTCAA+TGG - chr8_2:9326329-9326348 None:intergenic 35.0%
CTTATCATCTTTGTCAGCAT+CGG - chr8_2:9326638-9326657 None:intergenic 35.0%
!! AGTGGAAAGCATTTGTCATT+CGG + chr8_2:9326671-9326690 Msa1232740:CDS 35.0%
GGAAGAAAGCTCTTTATCTC+TGG + chr8_2:9323122-9323141 Msa1232740:CDS 40.0%
GATTGGAGAAACACTGTGTA+TGG + chr8_2:9323260-9323279 Msa1232740:CDS 40.0%
GCTTCAGCTATACCAATCAA+TGG - chr8_2:9323294-9323313 None:intergenic 40.0%
!!! GCTTTGTTTTACAGCTTAGC+TGG + chr8_2:9323312-9323331 Msa1232740:CDS 40.0%
! TAGCTGGTTGCTTCGATTTT+CGG + chr8_2:9323328-9323347 Msa1232740:CDS 40.0%
AGAGAACGAAGAAACGAACA+AGG - chr8_2:9323435-9323454 None:intergenic 40.0%
AGTTGTTCAATCATCGACGA+TGG + chr8_2:9323598-9323617 Msa1232740:CDS 40.0%
TACTTATGCGACCATTTGTG+AGG + chr8_2:9323701-9323720 Msa1232740:intron 40.0%
AAAATATGAGTGGGGTGATG+GGG - chr8_2:9324101-9324120 None:intergenic 40.0%
CAAAATATGAGTGGGGTGAT+GGG - chr8_2:9324102-9324121 None:intergenic 40.0%
TCAAAATATGAGTGGGGTGA+TGG - chr8_2:9324103-9324122 None:intergenic 40.0%
GCGACCACAATATGAAAAGA+TGG - chr8_2:9324244-9324263 None:intergenic 40.0%
! CTTAGATTGTGATCTGGGAT+CGG + chr8_2:9324749-9324768 Msa1232740:intron 40.0%
! TTAGATTGTGATCTGGGATC+GGG + chr8_2:9324750-9324769 Msa1232740:intron 40.0%
!! TGTTTGGTGTTGACTCTGTT+AGG + chr8_2:9324823-9324842 Msa1232740:intron 40.0%
TCTGACCAGAAATTCAACAC+TGG - chr8_2:9324865-9324884 None:intergenic 40.0%
GTAAGCTCTTCCTTCATAGA+GGG - chr8_2:9324915-9324934 None:intergenic 40.0%
TGTAAGCTCTTCCTTCATAG+AGG - chr8_2:9324916-9324935 None:intergenic 40.0%
GAAAAGATTCTTGCCAACTG+AGG - chr8_2:9324955-9324974 None:intergenic 40.0%
ACCACTCAATCTATTCCTAC+TGG + chr8_2:9325170-9325189 Msa1232740:intron 40.0%
CATCTCATACAACTGGGATA+TGG - chr8_2:9325463-9325482 None:intergenic 40.0%
!! TTCTTTCTCTCTAGAACCCT+TGG - chr8_2:9325533-9325552 None:intergenic 40.0%
!! AGGGTTCTAGAGAGAAAGAA+AGG + chr8_2:9325533-9325552 Msa1232740:intron 40.0%
TTGTATGACTTGAGACAGAC+TGG + chr8_2:9326017-9326036 Msa1232740:CDS 40.0%
GGTTCTTATAACCACCATGA+GGG + chr8_2:9326348-9326367 Msa1232740:intron 40.0%
ATAAAAAAGCAGAGCCCTCA+TGG - chr8_2:9326365-9326384 None:intergenic 40.0%
!! GTTATCCTGCAACTTTTTCC+AGG + chr8_2:9326437-9326456 Msa1232740:intron 40.0%
!!! GTTGCCATTTTGTCAGAATG+TGG + chr8_2:9326474-9326493 Msa1232740:CDS 40.0%
CATGCCACATTCTGACAAAA+TGG - chr8_2:9326481-9326500 None:intergenic 40.0%
! CATTTTGTCAGAATGTGGCA+TGG + chr8_2:9326479-9326498 Msa1232740:CDS 40.0%
ACTTCTTCCTCAAGGGATCA+CGG - chr8_2:9323081-9323100 None:intergenic 45.0%
AAGTGCGAGAATCTCTTCGA+AGG - chr8_2:9323400-9323419 None:intergenic 45.0%
TATGCGACCATTTGTGAGGT+TGG + chr8_2:9323705-9323724 Msa1232740:intron 45.0%
! TGAGTTCTGCCGGAACATTT+TGG + chr8_2:9324492-9324511 Msa1232740:intron 45.0%
GAAGTTGGCAACTTAGAGCA+TGG - chr8_2:9324705-9324724 None:intergenic 45.0%
CAGAAATTCAACACTGGTGC+TGG - chr8_2:9324859-9324878 None:intergenic 45.0%
! CAGCACCAGTGTTGAATTTC+TGG + chr8_2:9324857-9324876 Msa1232740:intron 45.0%
GCACTATTGAAGACCTCAGT+TGG + chr8_2:9324939-9324958 Msa1232740:CDS 45.0%
GCCAGTAGGAATAGATTGAG+TGG - chr8_2:9325174-9325193 None:intergenic 45.0%
TGTGAGGCAAGGCAACAATT+AGG - chr8_2:9325262-9325281 None:intergenic 45.0%
TTGCCTTGCCTCACAAACTT+AGG + chr8_2:9325267-9325286 Msa1232740:intron 45.0%
AGACCTAAGTTTGTGAGGCA+AGG - chr8_2:9325273-9325292 None:intergenic 45.0%
CGGTTCTTATAACCACCATG+AGG + chr8_2:9326347-9326366 Msa1232740:intron 45.0%
!! CCTGCAACTTTTTCCAGGTT+CGG + chr8_2:9326442-9326461 Msa1232740:intron 45.0%
!! CTGCAACTTTTTCCAGGTTC+GGG + chr8_2:9326443-9326462 Msa1232740:intron 45.0%
! CTTTTTCCAGGTTCGGGAAA+TGG + chr8_2:9326449-9326468 Msa1232740:intron 45.0%
TCATGTGCCTCAAGAGTGAT+GGG - chr8_2:9326699-9326718 None:intergenic 45.0%
!!! AAAATCATTATTATTATTTT+TGG + chr8_2:9326292-9326311 Msa1232740:intron 5.0%
ATTCTGACCGTGATCCCTTG+AGG + chr8_2:9323071-9323090 Msa1232740:five_prime_UTR 50.0%
TAGGGATCGAGGTTGACGAT+TGG + chr8_2:9323243-9323262 Msa1232740:intron 50.0%
TCAACAACATGGATCCTCGG+TGG - chr8_2:9324518-9324537 None:intergenic 50.0%
! CTACTGGCACTTTTCACCCT+GGG + chr8_2:9325186-9325205 Msa1232740:intron 50.0%
! TCCAAGGGAATGGGGCATTA+AGG + chr8_2:9325607-9325626 Msa1232740:intron 50.0%
ACCTTAATGCCCCATTCCCT+TGG - chr8_2:9325611-9325630 None:intergenic 50.0%
AAAAAGCAGAGCCCTCATGG+TGG - chr8_2:9326362-9326381 None:intergenic 50.0%
CCGAACCTGGAAAAAGTTGC+AGG - chr8_2:9326445-9326464 None:intergenic 50.0%
TTTCCAGGTTCGGGAAATGG+TGG + chr8_2:9326452-9326471 Msa1232740:intron 50.0%
TTCGGAACCCATCACTCTTG+AGG + chr8_2:9326689-9326708 Msa1232740:CDS 50.0%
GTCATGTGCCTCAAGAGTGA+TGG - chr8_2:9326700-9326719 None:intergenic 50.0%
CCTCGGTGGCCAAAATGTTC+CGG - chr8_2:9324504-9324523 None:intergenic 55.0%
!! CCAGGGTGAAAAGTGCCAGT+AGG - chr8_2:9325188-9325207 None:intergenic 55.0%
! CCTACTGGCACTTTTCACCC+TGG + chr8_2:9325185-9325204 Msa1232740:intron 55.0%
CAACCACCATTTCCCGAACC+TGG - chr8_2:9326458-9326477 None:intergenic 55.0%
!! CCGGAACATTTTGGCCACCG+AGG + chr8_2:9324501-9324520 Msa1232740:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 9323009 9326738 9323009 ID=Msa1232740;Name=Msa1232740
chr8_2 mRNA 9323009 9326738 9323009 ID=Msa1232740-mRNA-1;Parent=Msa1232740;Name=Msa1232740-mRNA-1;_AED=0.20;_eAED=0.20;_QI=111|1|0.87|1|1|1|8|0|238
chr8_2 exon 9323009 9323143 9323009 ID=Msa1232740-mRNA-1:exon:3688;Parent=Msa1232740-mRNA-1
chr8_2 exon 9323246 9323435 9323246 ID=Msa1232740-mRNA-1:exon:3689;Parent=Msa1232740-mRNA-1
chr8_2 exon 9323551 9323633 9323551 ID=Msa1232740-mRNA-1:exon:3690;Parent=Msa1232740-mRNA-1
chr8_2 exon 9324924 9324983 9324924 ID=Msa1232740-mRNA-1:exon:3691;Parent=Msa1232740-mRNA-1
chr8_2 exon 9325794 9325902 9325794 ID=Msa1232740-mRNA-1:exon:3692;Parent=Msa1232740-mRNA-1
chr8_2 exon 9326006 9326058 9326006 ID=Msa1232740-mRNA-1:exon:3693;Parent=Msa1232740-mRNA-1
chr8_2 exon 9326459 9326539 9326459 ID=Msa1232740-mRNA-1:exon:3694;Parent=Msa1232740-mRNA-1
chr8_2 exon 9326622 9326738 9326622 ID=Msa1232740-mRNA-1:exon:3695;Parent=Msa1232740-mRNA-1
chr8_2 five_prime_UTR 9323009 9323119 9323009 ID=Msa1232740-mRNA-1:five_prime_utr;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9323120 9323143 9323120 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9323246 9323435 9323246 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9323551 9323633 9323551 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9324924 9324983 9324924 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9325794 9325902 9325794 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9326006 9326058 9326006 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9326459 9326539 9326459 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
chr8_2 CDS 9326622 9326738 9326622 ID=Msa1232740-mRNA-1:cds;Parent=Msa1232740-mRNA-1
Gene Sequence

>Msa1232740

ATGGAAGAAAGCTCTTTATCTCTGGGATCGAGGTTGACGATTGGAGAAACACTGTGTATGGTGTTCATTCCATTGATTGGTATAGCTGAAGCTTTGTTTTACAGCTTAGCTGGTTGCTTCGATTTTCGGAGTTCAGAGCAGAAGAAGAAAGAAAAAGAGAAGAAAATGTTTTCTACCTTCGAAGAGATTCTCGCACTTGCTAACGATTCTCCTTTTAATGTGAATGAAATTGAGGCGTTGCATGAGTTATACAAGAAGTTGAGTTGTTCAATCATCGACGATGGTCTCATCCACAAAGAAGAGCTTACATTGGCACTATTGAAGACCTCAGTTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTTATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAACGAGAAGAAGTTCGGGAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATGTTGAAAATGAAATCCTTGAATCCATTATTGATAAGACATTTCAAGATGCCGATGCTGACAAAGATGATAAGATCAGTAAAGAAGAGTGGAAAGCATTTGTCATTCGGAACCCATCACTCTTGAGGCACATGACTCTTCCTAATCTGAAGTAA

Protein sequence

>Msa1232740

MEESSLSLGSRLTIGETLCMVFIPLIGIAEALFYSLAGCFDFRSSEQKKKEKEKKMFSTFEEILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTSVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVREMVVAILSECGMDVENEILESIIDKTFQDADADKDDKISKEEWKAFVIRNPSLLRHMTLPNLK*