AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0284960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284960 MtrunA17_Chr2g0301051 100.000 128 0 0 1 128 1 128 3.21e-90 257
Msa0284960 MtrunA17_Chr8g0344441 82.812 128 22 0 1 128 1 128 2.35e-76 222
Msa0284960 MtrunA17_Chr4g0044211 40.000 70 41 1 15 83 8 77 4.93e-13 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284960 AT3G14080.2 81.250 128 24 0 1 128 1 128 1.24e-75 220
Msa0284960 AT3G14080.1 81.250 128 24 0 1 128 1 128 1.24e-75 220
Msa0284960 AT1G19120.1 79.688 128 26 0 1 128 1 128 3.23e-71 209
Msa0284960 AT3G14080.4 83.178 107 18 0 22 128 12 118 4.43e-62 186
Msa0284960 AT3G14080.3 83.951 81 13 0 1 81 1 81 3.80e-46 145
Msa0284960 AT1G65700.2 42.466 73 41 1 12 83 4 76 1.23e-13 62.4
Msa0284960 AT1G65700.1 42.466 73 41 1 12 83 4 76 1.23e-13 62.4

Find 61 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTGTTGTTATTGAATT+TGG 0.068528 2_3:+24061058 Msa0284960:three_prime_UTR
GGGGAAAATGTTGTCTTAAT+TGG 0.182187 2_3:+24056608 Msa0284960:CDS
TTGAGCTCTTAAATTCTATT+TGG 0.201847 2_3:+24061094 Msa0284960:three_prime_UTR
TTACGCTCATTTGATCAATT+TGG 0.235792 2_3:+24056392 Msa0284960:CDS
CTTTATTGTGATGTCCCTTT+AGG 0.240623 2_3:+24056569 Msa0284960:CDS
GAAAGTGGAAAATTTCTTAA+TGG 0.242958 2_3:+24061138 Msa0284960:three_prime_UTR
GCGAGATGGGCGAAAACTTT+TGG 0.254662 2_3:+24056364 Msa0284960:CDS
CAATATGGAAATTGATGTTT+TGG 0.275099 2_3:+24060991 Msa0284960:three_prime_UTR
AATACTACACAGCTAGTAAT+TGG 0.315912 2_3:+24060949 Msa0284960:three_prime_UTR
TTCACCAGTTTGGTTTGGTT+TGG 0.330341 2_3:-24054881 None:intergenic
ACAGCTAATGTTGTTCTAGA+AGG 0.335927 2_3:+24056518 Msa0284960:intron
GAACTTAAGATTCACCAGTT+TGG 0.375578 2_3:-24054891 None:intergenic
ATGAATCATAGTGACTATAT+TGG 0.403621 2_3:-24061030 None:intergenic
TTCTTGTCCTGTTGCGAGAT+GGG 0.404019 2_3:+24056351 Msa0284960:CDS
GTAGAGAGTAAAAGCTCATC+AGG 0.409202 2_3:-24055356 None:intergenic
CAGTTTGGTTTGGTTTGGAT+TGG 0.410094 2_3:-24054876 None:intergenic
TTTCCCCACGAATTACATAA+AGG 0.423209 2_3:-24056592 None:intergenic
CTGCATTAAAATTTGCAGAT+AGG 0.423598 2_3:-24060828 None:intergenic
TAAGATTCACCAGTTTGGTT+TGG 0.437559 2_3:-24054886 None:intergenic
GAAGAATTGGCTCAATGTCT+TGG 0.438471 2_3:+24055327 Msa0284960:exon
CACCAGCTTGATTATTAAGA+TGG 0.440617 2_3:-24060803 None:intergenic
GGTGGGAAGAATAAGTAATA+TGG 0.447803 2_3:+24060878 Msa0284960:three_prime_UTR
AATTCAATAACAACAATTTG+AGG 0.456837 2_3:-24061055 None:intergenic
CAATCCAAACCAAACCAAAC+TGG 0.457652 2_3:+24054877 Msa0284960:five_prime_UTR
GAATTACATAAAGGCCTAAA+GGG 0.460885 2_3:-24056583 None:intergenic
AAGAATTGGCTCAATGTCTT+GGG 0.465878 2_3:+24055328 Msa0284960:exon
GACTCAAGTTGGATAACAAT+GGG 0.476388 2_3:+24060857 Msa0284960:three_prime_UTR
ATAATCAGACGCAGTGAAAG+TGG 0.477502 2_3:+24061123 Msa0284960:three_prime_UTR
TGTTGTCTTAATTGGAGAGC+TGG 0.479444 2_3:+24056616 Msa0284960:CDS
CTCTTCAAACAGAGAGAGAA+AGG 0.481707 2_3:+24054992 Msa0284960:five_prime_UTR
ATTGTTGTTATTGAATTTGG+AGG 0.483077 2_3:+24061061 Msa0284960:three_prime_UTR
TGAAGGGAACTATGAGGAAA+AGG 0.483782 2_3:+24060747 Msa0284960:CDS
CTTCTTGTCCTGTTGCGAGA+TGG 0.485695 2_3:+24056350 Msa0284960:CDS
ATTGTTATCCAACTTGAGTC+CGG 0.485837 2_3:-24060854 None:intergenic
CGAATTACATAAAGGCCTAA+AGG 0.486521 2_3:-24056584 None:intergenic
ATTCAATAACAACAATTTGA+GGG 0.487754 2_3:-24061054 None:intergenic
TTAGGCCTTTATGTAATTCG+TGG 0.493934 2_3:+24056587 Msa0284960:CDS
TCAATTTCCATATTGACCTA+TGG 0.501505 2_3:-24060983 None:intergenic
ACCAAACTCACCGATCGAAA+AGG 0.517079 2_3:+24055031 Msa0284960:five_prime_UTR
TGCAGCTGCCGGACTCAAGT+TGG 0.523066 2_3:+24060846 Msa0284960:three_prime_UTR
TTATCATTGATTTAGGACTT+GGG 0.525842 2_3:+24056719 Msa0284960:intron
TAGGCCTTTATGTAATTCGT+GGG 0.531905 2_3:+24056588 Msa0284960:CDS
TACCATCTTAATAATCAAGC+TGG 0.539624 2_3:+24060801 Msa0284960:three_prime_UTR
GGGAACTATGAGGAAAAGGA+TGG 0.544721 2_3:+24060751 Msa0284960:CDS
ACGCGATGCTAGTGATCTGA+AGG 0.547627 2_3:+24060730 Msa0284960:CDS
GTGATCTGAAGGGAACTATG+AGG 0.581281 2_3:+24060741 Msa0284960:CDS
GGTGAATCTTAAGTTCTGAA+AGG 0.583645 2_3:+24054898 Msa0284960:five_prime_UTR
GTCAGAGGCTGACATAAGAA+AGG 0.585967 2_3:+24056775 Msa0284960:CDS
AGCTTGATTATTAAGATGGT+AGG 0.589367 2_3:-24060799 None:intergenic
GATTTAGGACTTGGGAAAGG+AGG 0.590289 2_3:+24056727 Msa0284960:intron
GGACTCAAGTTGGATAACAA+TGG 0.591289 2_3:+24060856 Msa0284960:three_prime_UTR
ATTGATTTAGGACTTGGGAA+AGG 0.592822 2_3:+24056724 Msa0284960:intron
GCGTGTGAACGAGTGATTGT+TGG 0.605153 2_3:+24056542 Msa0284960:CDS
TCAAGTTGGATAACAATGGG+TGG 0.610601 2_3:+24060860 Msa0284960:three_prime_UTR
CAAGTTGGATAACAATGGGT+GGG 0.624420 2_3:+24060861 Msa0284960:three_prime_UTR
CATCTTAATAATCAAGCTGG+TGG 0.659454 2_3:+24060804 Msa0284960:three_prime_UTR
CGCGATGCTAGTGATCTGAA+GGG 0.662588 2_3:+24060731 Msa0284960:CDS
ACATATGACATGTGTGTCAG+AGG 0.664445 2_3:+24056760 Msa0284960:CDS
AGGCCTTTATGTAATTCGTG+GGG 0.677188 2_3:+24056589 Msa0284960:CDS
GACACACATGTCATATGTGG+TGG 0.683154 2_3:-24056755 None:intergenic
TCTGACACACATGTCATATG+TGG 0.686933 2_3:-24056758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTACAAAAATAAAAATATTA+TGG - chr2_3:24058707-24058726 None:intergenic 10.0%
!!! TGCTATATTATATTTTAATT+AGG + chr2_3:24058817-24058836 Msa0284960:intron 10.0%
!!! TATATTATATTTTAATTAGG+AGG + chr2_3:24058820-24058839 Msa0284960:intron 10.0%
!!! ATTTTTTCTTGAAGAAATTT+TGG + chr2_3:24055185-24055204 Msa0284960:intron 15.0%
!!! TTTTTTCTTGAAGAAATTTT+GGG + chr2_3:24055186-24055205 Msa0284960:intron 15.0%
!! AAAACATAAAAATTGAAAAC+AGG - chr2_3:24055645-24055664 None:intergenic 15.0%
!! ATTTGTATATTAATTGGTAT+TGG + chr2_3:24055681-24055700 Msa0284960:intron 15.0%
!! TAGTTCTTATGTATTTAATT+TGG + chr2_3:24056232-24056251 Msa0284960:intron 15.0%
!!! TATCATAAATTTTTTACACT+AGG - chr2_3:24056304-24056323 None:intergenic 15.0%
!! ATAGTTCTTGAAAAAATAAT+TGG + chr2_3:24056810-24056829 Msa0284960:intron 15.0%
!!! AATACAATTGACTTTTTAAA+CGG + chr2_3:24057230-24057249 Msa0284960:intron 15.0%
!!! ATTTAGCTTCTATTAATAAT+AGG - chr2_3:24057397-24057416 None:intergenic 15.0%
!!! TAGAAACAAATATTCAATTT+TGG + chr2_3:24057522-24057541 Msa0284960:intron 15.0%
!! CTATAAAGATAAAACAATAA+GGG - chr2_3:24058609-24058628 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTCTTTCA+GGG - chr2_3:24058757-24058776 None:intergenic 15.0%
!!! TCTTTTTTTTTTTTTCTTTC+AGG - chr2_3:24058758-24058777 None:intergenic 15.0%
!!! TATGTATTTGTGTTTTAAAT+AGG + chr2_3:24058892-24058911 Msa0284960:intron 15.0%
!!! ATGTATTTGTGTTTTAAATA+GGG + chr2_3:24058893-24058912 Msa0284960:intron 15.0%
!!! AATATGTTTTTGATAAAAAC+CGG - chr2_3:24059071-24059090 None:intergenic 15.0%
!!! AAAAATAATTAGTGTTTTGA+AGG - chr2_3:24059506-24059525 None:intergenic 15.0%
!!! CAATAAATTATTCGTTTTTT+CGG + chr2_3:24060427-24060446 Msa0284960:intron 15.0%
!!! CAATTTTATTTCAATGGAAA+AGG - chr2_3:24055115-24055134 None:intergenic 20.0%
!! TTTCCATTGAAATAAAATTG+TGG + chr2_3:24055115-24055134 Msa0284960:intron 20.0%
!! TTCCATTGAAATAAAATTGT+GGG + chr2_3:24055116-24055135 Msa0284960:intron 20.0%
!!! AGTTTTGATTTTTGAATTGT+AGG + chr2_3:24055159-24055178 Msa0284960:intron 20.0%
!!! TATGTTTTTTTCTTTTTCTG+TGG + chr2_3:24055657-24055676 Msa0284960:intron 20.0%
!!! ATGTTTTTTTCTTTTTCTGT+GGG + chr2_3:24055658-24055677 Msa0284960:intron 20.0%
!!! ACTTCTTCTATTTTATAAAC+CGG - chr2_3:24055909-24055928 None:intergenic 20.0%
!!! TATTTAATTTGGTTAAGTAG+AGG + chr2_3:24056243-24056262 Msa0284960:intron 20.0%
!!! GTATTCTTTATCATTGATTT+AGG + chr2_3:24056712-24056731 Msa0284960:intron 20.0%
!! TTTAAATAATCTACAACGTT+TGG - chr2_3:24056981-24057000 None:intergenic 20.0%
!!! ATTTAAAGATGATTTGTTGA+AGG + chr2_3:24056994-24057013 Msa0284960:intron 20.0%
!!! ATTCTATCTAACTCATTTTT+TGG - chr2_3:24057329-24057348 None:intergenic 20.0%
!! CTTGATATTGAACATATATT+TGG + chr2_3:24057453-24057472 Msa0284960:intron 20.0%
!! TAACCAATGCTTTATAATAT+TGG + chr2_3:24057654-24057673 Msa0284960:intron 20.0%
!! TAACCAATATTATAAAGCAT+TGG - chr2_3:24057660-24057679 None:intergenic 20.0%
!!! TTTAAAAAGCATAATTCACT+TGG - chr2_3:24057787-24057806 None:intergenic 20.0%
!!! TTCTAAGAATTTGAAATGTT+GGG + chr2_3:24057911-24057930 Msa0284960:intron 20.0%
!! GTTATCCTCTAAATATTTAT+CGG + chr2_3:24057966-24057985 Msa0284960:intron 20.0%
!! CCTATAAAGATAAAACAATA+AGG - chr2_3:24058610-24058629 None:intergenic 20.0%
!!! CCTTATTGTTTTATCTTTAT+AGG + chr2_3:24058607-24058626 Msa0284960:intron 20.0%
!!! ATTTTATCATAATTTTGGGT+TGG - chr2_3:24058678-24058697 None:intergenic 20.0%
!! ACCCAAAATTATGATAAAAT+AGG + chr2_3:24058678-24058697 Msa0284960:intron 20.0%
!!! CCCTATTTTATCATAATTTT+GGG - chr2_3:24058682-24058701 None:intergenic 20.0%
!! CCCAAAATTATGATAAAATA+GGG + chr2_3:24058679-24058698 Msa0284960:intron 20.0%
!!! ACCCTATTTTATCATAATTT+TGG - chr2_3:24058683-24058702 None:intergenic 20.0%
!! AAAAAAAAGAAACTGTTGAA+CGG + chr2_3:24058768-24058787 Msa0284960:intron 20.0%
!!! ATTAATTTGTATTTTGGTAC+CGG + chr2_3:24059049-24059068 Msa0284960:intron 20.0%
!! ATTAAATGATTGTCTTATAG+TGG + chr2_3:24059585-24059604 Msa0284960:intron 20.0%
!! TAAGAATTCTAAACTGAATT+GGG + chr2_3:24060275-24060294 Msa0284960:intron 20.0%
!!! TAAGATGTATTTTGAATTCT+AGG + chr2_3:24060312-24060331 Msa0284960:intron 20.0%
!!! AAGATGTATTTTGAATTCTA+GGG + chr2_3:24060313-24060332 Msa0284960:intron 20.0%
!!! TCCTCAACAATTTATTTTTA+TGG + chr2_3:24060535-24060554 Msa0284960:intron 20.0%
!!! CCTCAACAATTTATTTTTAT+GGG + chr2_3:24060536-24060555 Msa0284960:intron 20.0%
!! ATCATAAAACTACTCTAATT+TGG + chr2_3:24060647-24060666 Msa0284960:intron 20.0%
!! ATTCAATAACAACAATTTGA+GGG - chr2_3:24061057-24061076 None:intergenic 20.0%
!! AATTCAATAACAACAATTTG+AGG - chr2_3:24061058-24061077 None:intergenic 20.0%
!!! CAAATTGTTGTTATTGAATT+TGG + chr2_3:24061058-24061077 Msa0284960:three_prime_UTR 20.0%
!!! AACCCACAATTTTATTTCAA+TGG - chr2_3:24055121-24055140 None:intergenic 25.0%
!!! TTAAAGTTTGTTGCTTTTTC+AGG + chr2_3:24055297-24055316 Msa0284960:intron 25.0%
! TCTCAAATTATTATCGATGT+CGG - chr2_3:24055483-24055502 None:intergenic 25.0%
! TGTGGGATTTGTATATTAAT+TGG + chr2_3:24055675-24055694 Msa0284960:intron 25.0%
!! GTATATTAATTGGTATTGGA+TGG + chr2_3:24055685-24055704 Msa0284960:intron 25.0%
!!! GTGTTTTGTGTTTTTTTCTT+TGG + chr2_3:24055960-24055979 Msa0284960:intron 25.0%
!!! TTTTGTGTTTTTTTCTTTGG+TGG + chr2_3:24055963-24055982 Msa0284960:intron 25.0%
!!! TTCAAACTTTTTCATGTGAT+AGG - chr2_3:24056137-24056156 None:intergenic 25.0%
!!! ATGCTTTTTATGTAGCAATT+TGG + chr2_3:24056197-24056216 Msa0284960:intron 25.0%
! AATCATTGAAACGAATAATG+AGG + chr2_3:24056270-24056289 Msa0284960:intron 25.0%
!!! TATTAACTGACATTTTGATG+TGG + chr2_3:24056486-24056505 Msa0284960:intron 25.0%
!!! TTTATCATTGATTTAGGACT+TGG + chr2_3:24056718-24056737 Msa0284960:intron 25.0%
!!! TTATCATTGATTTAGGACTT+GGG + chr2_3:24056719-24056738 Msa0284960:intron 25.0%
!! AAATGACTGTTTGGAATATA+AGG + chr2_3:24056839-24056858 Msa0284960:intron 25.0%
!! AATGACTGTTTGGAATATAA+GGG + chr2_3:24056840-24056859 Msa0284960:intron 25.0%
! AAACATGCATTAATTGATCT+TGG - chr2_3:24057041-24057060 None:intergenic 25.0%
! TTAAAACTGGTGTAACTAAT+TGG - chr2_3:24057109-24057128 None:intergenic 25.0%
! ACTATTTATAGGCTAATCTA+AGG - chr2_3:24057169-24057188 None:intergenic 25.0%
! GTTAGAGAGAAACTATTTAT+AGG - chr2_3:24057180-24057199 None:intergenic 25.0%
! AAATGAATCAGTAAGGTATA+TGG - chr2_3:24057598-24057617 None:intergenic 25.0%
! CTAAAACAAATGAATCAGTA+AGG - chr2_3:24057605-24057624 None:intergenic 25.0%
!!! CTTACTGATTCATTTGTTTT+AGG + chr2_3:24057603-24057622 Msa0284960:intron 25.0%
!!! TCATTTGTTTTAGGTTGAAT+TGG + chr2_3:24057612-24057631 Msa0284960:intron 25.0%
!! CTTCTAAGAATTTGAAATGT+TGG + chr2_3:24057910-24057929 Msa0284960:intron 25.0%
!! TCTAAGAATTTGAAATGTTG+GGG + chr2_3:24057912-24057931 Msa0284960:intron 25.0%
! AACTTAAACAGAACTTTCAA+GGG - chr2_3:24057949-24057968 None:intergenic 25.0%
! TAACTTAAACAGAACTTTCA+AGG - chr2_3:24057950-24057969 None:intergenic 25.0%
! TAAGACCGATAAATATTTAG+AGG - chr2_3:24057974-24057993 None:intergenic 25.0%
! ATTTGACAATCATTTCTGAT+AGG + chr2_3:24058048-24058067 Msa0284960:intron 25.0%
!! ATTTTGTAGATAATTCTGTC+AGG + chr2_3:24058266-24058285 Msa0284960:intron 25.0%
! TAATAGAACTCAAAACTTCA+AGG - chr2_3:24058388-24058407 None:intergenic 25.0%
!!! TTTTTTTTTTCTTTCAGGGA+AGG - chr2_3:24058753-24058772 None:intergenic 25.0%
!!! TGTTTTAAATAGGGAAGTTA+TGG + chr2_3:24058902-24058921 Msa0284960:intron 25.0%
!!! GTTTTAAATAGGGAAGTTAT+GGG + chr2_3:24058903-24058922 Msa0284960:intron 25.0%
! ATACTACATACAAGAGATTA+TGG + chr2_3:24059208-24059227 Msa0284960:intron 25.0%
! TAAATTCATGGTTATCCATA+GGG + chr2_3:24059269-24059288 Msa0284960:intron 25.0%
!!! TTTGTAAATCCAATTTGTTG+CGG - chr2_3:24059299-24059318 None:intergenic 25.0%
! AATTGGATTTACAAAAGTCA+TGG + chr2_3:24059304-24059323 Msa0284960:intron 25.0%
! AACTAATTTCTATGTGAACT+TGG + chr2_3:24059420-24059439 Msa0284960:intron 25.0%
! ACTAATTTCTATGTGAACTT+GGG + chr2_3:24059421-24059440 Msa0284960:intron 25.0%
!! TCATTTAATTGTCGCATTTT+GGG - chr2_3:24059574-24059593 None:intergenic 25.0%
!! ATCATTTAATTGTCGCATTT+TGG - chr2_3:24059575-24059594 None:intergenic 25.0%
! TAATTTGAATCCATTTGCAA+AGG + chr2_3:24059669-24059688 Msa0284960:intron 25.0%
! ATGTTCAAAATTACTAGAGA+GGG - chr2_3:24059878-24059897 None:intergenic 25.0%
! AATGTTCAAAATTACTAGAG+AGG - chr2_3:24059879-24059898 None:intergenic 25.0%
!! TCTAGTAATTTTGAACATTG+TGG + chr2_3:24059880-24059899 Msa0284960:intron 25.0%
! GCATAAAAGTTCAAAATCAA+CGG - chr2_3:24059919-24059938 None:intergenic 25.0%
!! TGTTCATCAGTTTTCAATTT+TGG + chr2_3:24059985-24060004 Msa0284960:intron 25.0%
!!! CATTTTAAAAGCCAATTTTC+TGG + chr2_3:24060224-24060243 Msa0284960:intron 25.0%
! CTAAGAATTCTAAACTGAAT+TGG + chr2_3:24060274-24060293 Msa0284960:intron 25.0%
! AAGAATTCTAAACTGAATTG+GGG + chr2_3:24060276-24060295 Msa0284960:intron 25.0%
!! TAATTTGTCATGACTGAATT+AGG - chr2_3:24060379-24060398 None:intergenic 25.0%
! ATTCAGTCATGACAAATTAT+TGG + chr2_3:24060380-24060399 Msa0284960:intron 25.0%
! TGAGTGAATAATTGAAAACA+AGG - chr2_3:24060409-24060428 None:intergenic 25.0%
! TTTCATATTCCTAGAAATGT+CGG + chr2_3:24060490-24060509 Msa0284960:intron 25.0%
! CCCATAAAAATAAATTGTTG+AGG - chr2_3:24060539-24060558 None:intergenic 25.0%
!!! ATTGGTATTTTTTGTACCAT+AGG + chr2_3:24060967-24060986 Msa0284960:three_prime_UTR 25.0%
!! CAATATGGAAATTGATGTTT+TGG + chr2_3:24060991-24061010 Msa0284960:three_prime_UTR 25.0%
! ATGAATCATAGTGACTATAT+TGG - chr2_3:24061033-24061052 None:intergenic 25.0%
!! ATTGTTGTTATTGAATTTGG+AGG + chr2_3:24061061-24061080 Msa0284960:three_prime_UTR 25.0%
! TTGAGCTCTTAAATTCTATT+TGG + chr2_3:24061094-24061113 Msa0284960:three_prime_UTR 25.0%
! GAAAGTGGAAAATTTCTTAA+TGG + chr2_3:24061138-24061157 Msa0284960:three_prime_UTR 25.0%
! TGAAATTGAACCTTTTCGAT+CGG - chr2_3:24055044-24055063 None:intergenic 30.0%
GAAAAGGAGAAAGAACAAAA+GGG - chr2_3:24055099-24055118 None:intergenic 30.0%
AGTGAAATTGAATTTGGAGA+AGG + chr2_3:24055267-24055286 Msa0284960:intron 30.0%
GTGAAATTGAATTTGGAGAA+GGG + chr2_3:24055268-24055287 Msa0284960:intron 30.0%
!! TTCAGGTTTTGTAGAAGAAT+TGG + chr2_3:24055314-24055333 Msa0284960:intron 30.0%
CTCAAATTATTATCGATGTC+GGG - chr2_3:24055482-24055501 None:intergenic 30.0%
TTAAATGCAATCACATGTGT+CGG + chr2_3:24055514-24055533 Msa0284960:intron 30.0%
TATTCATGAGAACTAGTAGT+AGG + chr2_3:24055761-24055780 Msa0284960:intron 30.0%
TAACCTTTGCATATGAAGAT+AGG - chr2_3:24056019-24056038 None:intergenic 30.0%
! TTTTTCATGTGATAGGAACA+AGG - chr2_3:24056130-24056149 None:intergenic 30.0%
TTGAAACGAATAATGAGGTA+TGG + chr2_3:24056275-24056294 Msa0284960:intron 30.0%
TTACGCTCATTTGATCAATT+TGG + chr2_3:24056392-24056411 Msa0284960:CDS 30.0%
AAGAAGAATGCAAGTAGAAT+TGG - chr2_3:24056424-24056443 None:intergenic 30.0%
AGAACAACATTAGCTGTAAA+TGG - chr2_3:24056515-24056534 None:intergenic 30.0%
GAATTACATAAAGGCCTAAA+GGG - chr2_3:24056586-24056605 None:intergenic 30.0%
TGGATATTCAAATGACTGTT+TGG + chr2_3:24056830-24056849 Msa0284960:intron 30.0%
! ATGACTGTTTGGAATATAAG+GGG + chr2_3:24056841-24056860 Msa0284960:intron 30.0%
!!! TGTAGCAATGTTTTAGTAAC+TGG + chr2_3:24056879-24056898 Msa0284960:intron 30.0%
!!! ACTGGATTAGTCAGTTTTTT+AGG + chr2_3:24056897-24056916 Msa0284960:intron 30.0%
!!! CTGGATTAGTCAGTTTTTTA+GGG + chr2_3:24056898-24056917 Msa0284960:intron 30.0%
!!! TAGTCAGTTTTTTAGGGATT+TGG + chr2_3:24056904-24056923 Msa0284960:intron 30.0%
AATGCATGTTTCTTAAATGC+AGG + chr2_3:24057050-24057069 Msa0284960:intron 30.0%
ATGCATGTTTCTTAAATGCA+GGG + chr2_3:24057051-24057070 Msa0284960:intron 30.0%
!! TTAGTTACACCAGTTTTAAC+AGG + chr2_3:24057110-24057129 Msa0284960:intron 30.0%
AGAAAACCAATCCTAAGAAT+AGG - chr2_3:24057274-24057293 None:intergenic 30.0%
TGTTCAATATCAAGCTTCAA+AGG - chr2_3:24057447-24057466 None:intergenic 30.0%
!!! CTATCTATCAACTGGTTTTT+CGG + chr2_3:24057562-24057581 Msa0284960:intron 30.0%
!!! TATCTATCAACTGGTTTTTC+GGG + chr2_3:24057563-24057582 Msa0284960:intron 30.0%
! CCTTTAGAGAACAATTGAAA+CGG - chr2_3:24057870-24057889 None:intergenic 30.0%
! CTAAGAATTTGAAATGTTGG+GGG + chr2_3:24057913-24057932 Msa0284960:intron 30.0%
TTTCGTATTGTCGCTATAAT+GGG - chr2_3:24058102-24058121 None:intergenic 30.0%
ATTATAGCGACAATACGAAA+GGG + chr2_3:24058102-24058121 Msa0284960:intron 30.0%
! TCCATGTGATTCTGTTATTT+AGG + chr2_3:24058211-24058230 Msa0284960:intron 30.0%
! CCATGTGATTCTGTTATTTA+GGG + chr2_3:24058212-24058231 Msa0284960:intron 30.0%
! CATGTGATTCTGTTATTTAG+GGG + chr2_3:24058213-24058232 Msa0284960:intron 30.0%
TTATTTAGGGGACTGATAAT+AGG + chr2_3:24058225-24058244 Msa0284960:intron 30.0%
! TTACCATTTTCTGTATGTAG+AGG + chr2_3:24058309-24058328 Msa0284960:intron 30.0%
AACTCAAAACTTCAAGGTAA+TGG - chr2_3:24058382-24058401 None:intergenic 30.0%
GAGTTCTATTAATTTCCACA+TGG + chr2_3:24058397-24058416 Msa0284960:intron 30.0%
ATTAATCGACGTAACTCTTA+TGG + chr2_3:24058503-24058522 Msa0284960:intron 30.0%
TTACATATGATGAGAGATTG+TGG - chr2_3:24058550-24058569 None:intergenic 30.0%
AAAAAACATGCAACAGCAAA+AGG + chr2_3:24058631-24058650 Msa0284960:intron 30.0%
AAAAACATGCAACAGCAAAA+GGG + chr2_3:24058632-24058651 Msa0284960:intron 30.0%
AACCTAGTCGTTACAAATAT+GGG - chr2_3:24059129-24059148 None:intergenic 30.0%
GTATGTAGTATCGTATACAT+TGG - chr2_3:24059199-24059218 None:intergenic 30.0%
!! TGAATTTAGCTTTGTTCCAA+TGG - chr2_3:24059257-24059276 None:intergenic 30.0%
TTGGAACAAAGCTAAATTCA+TGG + chr2_3:24059257-24059276 Msa0284960:intron 30.0%
CTAAATTCATGGTTATCCAT+AGG + chr2_3:24059268-24059287 Msa0284960:intron 30.0%
! ATTCACATATCACTAGTTTG+AGG + chr2_3:24059467-24059486 Msa0284960:intron 30.0%
!!! CATTCAAACCTTGTCATTTT+AGG - chr2_3:24059539-24059558 None:intergenic 30.0%
!!! CAGTTTTCAATTTTGGTTTG+TGG + chr2_3:24059992-24060011 Msa0284960:intron 30.0%
TCCAAATTATAGACTGCAAA+GGG - chr2_3:24060078-24060097 None:intergenic 30.0%
!!! ATTGGCTTTTAAAATGAGTG+AGG - chr2_3:24060220-24060239 None:intergenic 30.0%
! GTTTAGAATTCTTAGACTGT+GGG - chr2_3:24060269-24060288 None:intergenic 30.0%
! AGTTTAGAATTCTTAGACTG+TGG - chr2_3:24060270-24060289 None:intergenic 30.0%
AGAATTCTAAACTGAATTGG+GGG + chr2_3:24060277-24060296 Msa0284960:intron 30.0%
!!! TCGTTTTTTCGGAAGAAAAA+TGG + chr2_3:24060438-24060457 Msa0284960:intron 30.0%
!! CTGCTTTTGTTTCTTATTGA+TGG + chr2_3:24060575-24060594 Msa0284960:intron 30.0%
! ATTCATTTTCTTCGCATTTC+AGG + chr2_3:24060694-24060713 Msa0284960:intron 30.0%
!! GGAAGTTTTAGTCAAAATCA+AGG - chr2_3:24060781-24060800 None:intergenic 30.0%
AGCTTGATTATTAAGATGGT+AGG - chr2_3:24060802-24060821 None:intergenic 30.0%
TACCATCTTAATAATCAAGC+TGG + chr2_3:24060801-24060820 Msa0284960:three_prime_UTR 30.0%
CTGCATTAAAATTTGCAGAT+AGG - chr2_3:24060831-24060850 None:intergenic 30.0%
AATACTACACAGCTAGTAAT+TGG + chr2_3:24060949-24060968 Msa0284960:three_prime_UTR 30.0%
! TTTTGTACCATAGGTCAATA+TGG + chr2_3:24060976-24060995 Msa0284960:three_prime_UTR 30.0%
TCAATTTCCATATTGACCTA+TGG - chr2_3:24060986-24061005 None:intergenic 30.0%
TAAGATTCACCAGTTTGGTT+TGG - chr2_3:24054889-24054908 None:intergenic 35.0%
GAACTTAAGATTCACCAGTT+TGG - chr2_3:24054894-24054913 None:intergenic 35.0%
!! GGTGAATCTTAAGTTCTGAA+AGG + chr2_3:24054898-24054917 Msa0284960:five_prime_UTR 35.0%
AAGCGTTAAACACGTTAAAG+GGG - chr2_3:24055067-24055086 None:intergenic 35.0%
CAAGCGTTAAACACGTTAAA+GGG - chr2_3:24055068-24055087 None:intergenic 35.0%
ACAAGCGTTAAACACGTTAA+AGG - chr2_3:24055069-24055088 None:intergenic 35.0%
GGAAAAGGAGAAAGAACAAA+AGG - chr2_3:24055100-24055119 None:intergenic 35.0%
!! ATTGTGGGTTGTCTTTGTTT+TGG + chr2_3:24055131-24055150 Msa0284960:intron 35.0%
!!! TTGTGGGTTGTCTTTGTTTT+GGG + chr2_3:24055132-24055151 Msa0284960:intron 35.0%
! AGTTTGTGTGTTTGAGATTG+TGG + chr2_3:24055238-24055257 Msa0284960:intron 35.0%
! GTTTGTGTGTTTGAGATTGT+GGG + chr2_3:24055239-24055258 Msa0284960:intron 35.0%
! TTTGTGTGTTTGAGATTGTG+GGG + chr2_3:24055240-24055259 Msa0284960:intron 35.0%
GGTTGGAGTGAAATTGAATT+TGG + chr2_3:24055261-24055280 Msa0284960:intron 35.0%
ATTGAATTTGGAGAAGGGTT+TGG + chr2_3:24055273-24055292 Msa0284960:intron 35.0%
! AAGAATTGGCTCAATGTCTT+GGG + chr2_3:24055328-24055347 Msa0284960:exon 35.0%
GCATACATGCATATGAAGAT+AGG + chr2_3:24055783-24055802 Msa0284960:intron 35.0%
CATATGAAGATAGGATGATG+AGG + chr2_3:24055792-24055811 Msa0284960:intron 35.0%
CATCCTATCTTCATATGCAA+AGG + chr2_3:24056013-24056032 Msa0284960:intron 35.0%
ACTTGCATTCTTCTTTGTGA+AGG + chr2_3:24056429-24056448 Msa0284960:intron 35.0%
! ACAGCTAATGTTGTTCTAGA+AGG + chr2_3:24056518-24056537 Msa0284960:intron 35.0%
CTTTATTGTGATGTCCCTTT+AGG + chr2_3:24056569-24056588 Msa0284960:CDS 35.0%
CGAATTACATAAAGGCCTAA+AGG - chr2_3:24056587-24056606 None:intergenic 35.0%
TTAGGCCTTTATGTAATTCG+TGG + chr2_3:24056587-24056606 Msa0284960:CDS 35.0%
TAGGCCTTTATGTAATTCGT+GGG + chr2_3:24056588-24056607 Msa0284960:CDS 35.0%
TTTCCCCACGAATTACATAA+AGG - chr2_3:24056595-24056614 None:intergenic 35.0%
GGGGAAAATGTTGTCTTAAT+TGG + chr2_3:24056608-24056627 Msa0284960:CDS 35.0%
! ATTGATTTAGGACTTGGGAA+AGG + chr2_3:24056724-24056743 Msa0284960:intron 35.0%
TAATTGATCTTGGCCATTGT+TGG - chr2_3:24057031-24057050 None:intergenic 35.0%
TTTCTTAAATGCAGGGAATC+TGG + chr2_3:24057058-24057077 Msa0284960:intron 35.0%
GTCAATAAGCCTGTTAAAAC+TGG - chr2_3:24057122-24057141 None:intergenic 35.0%
TTCGTCTCAATCCTATTCTT+AGG + chr2_3:24057260-24057279 Msa0284960:intron 35.0%
CTCAATCCTATTCTTAGGAT+TGG + chr2_3:24057265-24057284 Msa0284960:intron 35.0%
GCTAAATGATATCAGACCAT+AGG + chr2_3:24057410-24057429 Msa0284960:intron 35.0%
TAGATAGTTCATGAGAGAAC+TGG - chr2_3:24057549-24057568 None:intergenic 35.0%
CTCATGAACTATCTATCAAC+TGG + chr2_3:24057554-24057573 Msa0284960:intron 35.0%
GAAAGCTTCTAACATGTCAT+CGG - chr2_3:24057683-24057702 None:intergenic 35.0%
! TCATGTAATTACTGCCACTT+TGG + chr2_3:24057707-24057726 Msa0284960:intron 35.0%
TAGTTCAAAATGAGCCAAAG+TGG - chr2_3:24057724-24057743 None:intergenic 35.0%
CCGTTTCAATTGTTCTCTAA+AGG + chr2_3:24057867-24057886 Msa0284960:intron 35.0%
! TTCTCTAAAGGATTCTCAGT+AGG + chr2_3:24057879-24057898 Msa0284960:intron 35.0%
AATGTCCAGTCTATTGTCAA+GGG - chr2_3:24058031-24058050 None:intergenic 35.0%
AAATGTCCAGTCTATTGTCA+AGG - chr2_3:24058032-24058051 None:intergenic 35.0%
CTTTCGTATTGTCGCTATAA+TGG - chr2_3:24058103-24058122 None:intergenic 35.0%
CATTATAGCGACAATACGAA+AGG + chr2_3:24058101-24058120 Msa0284960:intron 35.0%
TTATAGCGACAATACGAAAG+GGG + chr2_3:24058103-24058122 Msa0284960:intron 35.0%
CCCTAAATAACAGAATCACA+TGG - chr2_3:24058215-24058234 None:intergenic 35.0%
ATTAATAAGAGCCATCTGGA+GGG - chr2_3:24058489-24058508 None:intergenic 35.0%
AGGACATTTATGGTTATGTG+TGG + chr2_3:24058865-24058884 Msa0284960:intron 35.0%
!! TCTGTTAGTTGGTAAAGGAT+TGG + chr2_3:24058944-24058963 Msa0284960:intron 35.0%
!! CTGTTAGTTGGTAAAGGATT+GGG + chr2_3:24058945-24058964 Msa0284960:intron 35.0%
ATGCAAGACTCGAATTTCTT+AGG + chr2_3:24059007-24059026 Msa0284960:intron 35.0%
GAACCTAGTCGTTACAAATA+TGG - chr2_3:24059130-24059149 None:intergenic 35.0%
!!! GATTAGTTTTGCAGTTTGCA+GGG - chr2_3:24059162-24059181 None:intergenic 35.0%
TACATTGGATGATGACTACA+GGG - chr2_3:24059184-24059203 None:intergenic 35.0%
ATACATTGGATGATGACTAC+AGG - chr2_3:24059185-24059204 None:intergenic 35.0%
!! TTAGCTTTGTTCCAATGGTA+CGG - chr2_3:24059252-24059271 None:intergenic 35.0%
!! GTCAACTTGCTTTTGATACT+TGG - chr2_3:24059391-24059410 None:intergenic 35.0%
!!! TTGTCATTTTAGGCATGTAC+AGG - chr2_3:24059529-24059548 None:intergenic 35.0%
TGTACATGCCTAAAATGACA+AGG + chr2_3:24059528-24059547 Msa0284960:intron 35.0%
TTTGAATCCATTTGCAAAGG+AGG + chr2_3:24059672-24059691 Msa0284960:intron 35.0%
TTCGTTTATGCTAAGAGCTT+TGG - chr2_3:24059725-24059744 None:intergenic 35.0%
!! CTGGATTTGTTCGTAGTTTT+TGG - chr2_3:24059756-24059775 None:intergenic 35.0%
TTATAGCAAGTTAGCAATGC+TGG - chr2_3:24059775-24059794 None:intergenic 35.0%
!!! AGTTTTAGCTCATTTGAGCT+GGG - chr2_3:24059799-24059818 None:intergenic 35.0%
!!! AAGTTTTAGCTCATTTGAGC+TGG - chr2_3:24059800-24059819 None:intergenic 35.0%
!! TGAGCTAAAACTTAGCTCTA+CGG + chr2_3:24059807-24059826 Msa0284960:intron 35.0%
TCAAAATTACTAGAGAGGGA+AGG - chr2_3:24059874-24059893 None:intergenic 35.0%
CTCAATAGGATGAACTTTGT+TGG + chr2_3:24060029-24060048 Msa0284960:intron 35.0%
AAATTATAGACTGCAAAGGG+TGG - chr2_3:24060075-24060094 None:intergenic 35.0%
ACCCTTTGCAGTCTATAATT+TGG + chr2_3:24060074-24060093 Msa0284960:intron 35.0%
GTCCAAATTATAGACTGCAA+AGG - chr2_3:24060079-24060098 None:intergenic 35.0%
GTGTCATATTGATGCAATGA+AGG - chr2_3:24060111-24060130 None:intergenic 35.0%
GCTCTATCTATAGACAATGT+GGG - chr2_3:24060168-24060187 None:intergenic 35.0%
ATGCCTTGTAAGTAATACGA+AGG - chr2_3:24060190-24060209 None:intergenic 35.0%
TATTACTTACAAGGCATGAG+TGG + chr2_3:24060193-24060212 Msa0284960:intron 35.0%
CTAACTCAATGCCAGAAAAT+TGG - chr2_3:24060238-24060257 None:intergenic 35.0%
!! TTTTTCGGAAGAAAAATGGC+TGG + chr2_3:24060442-24060461 Msa0284960:intron 35.0%
CACCAGCTTGATTATTAAGA+TGG - chr2_3:24060806-24060825 None:intergenic 35.0%
CATCTTAATAATCAAGCTGG+TGG + chr2_3:24060804-24060823 Msa0284960:three_prime_UTR 35.0%
ATTGTTATCCAACTTGAGTC+CGG - chr2_3:24060857-24060876 None:intergenic 35.0%
!! GACTCAAGTTGGATAACAAT+GGG + chr2_3:24060857-24060876 Msa0284960:three_prime_UTR 35.0%
GGTGGGAAGAATAAGTAATA+TGG + chr2_3:24060878-24060897 Msa0284960:three_prime_UTR 35.0%
!! CAGTTTGGTTTGGTTTGGAT+TGG - chr2_3:24054879-24054898 None:intergenic 40.0%
CAATCCAAACCAAACCAAAC+TGG + chr2_3:24054877-24054896 Msa0284960:five_prime_UTR 40.0%
!! TTCACCAGTTTGGTTTGGTT+TGG - chr2_3:24054884-24054903 None:intergenic 40.0%
CTCTTCAAACAGAGAGAGAA+AGG + chr2_3:24054992-24055011 Msa0284960:five_prime_UTR 40.0%
! GAAGAATTGGCTCAATGTCT+TGG + chr2_3:24055327-24055346 Msa0284960:exon 40.0%
GTAGAGAGTAAAAGCTCATC+AGG - chr2_3:24055359-24055378 None:intergenic 40.0%
ATGATGAGGTAAGCCAGTTA+GGG + chr2_3:24055806-24055825 Msa0284960:intron 40.0%
TCAGTGCTTCATTCAATCAC+TGG - chr2_3:24056051-24056070 None:intergenic 40.0%
AGGCCTTTATGTAATTCGTG+GGG + chr2_3:24056589-24056608 Msa0284960:CDS 40.0%
TGTTGTCTTAATTGGAGAGC+TGG + chr2_3:24056616-24056635 Msa0284960:CDS 40.0%
TCTGACACACATGTCATATG+TGG - chr2_3:24056761-24056780 None:intergenic 40.0%
ACATATGACATGTGTGTCAG+AGG + chr2_3:24056760-24056779 Msa0284960:CDS 40.0%
CAACCATGTGACGCATTTAT+TGG + chr2_3:24056930-24056949 Msa0284960:intron 40.0%
AGACCAATAAATGCGTCACA+TGG - chr2_3:24056936-24056955 None:intergenic 40.0%
! TGTGACGCATTTATTGGTCT+TGG + chr2_3:24056936-24056955 Msa0284960:intron 40.0%
! GGTTTAAAGTGAGCCAACAA+TGG + chr2_3:24057015-24057034 Msa0284960:intron 40.0%
AAAGGCTCACATATGTCCTA+TGG - chr2_3:24057429-24057448 None:intergenic 40.0%
! TTGAATTGGTCAGCTTTGTC+TGG + chr2_3:24057626-24057645 Msa0284960:intron 40.0%
AGATAGATTTCCCCTACTCT+TGG + chr2_3:24057831-24057850 Msa0284960:intron 40.0%
TGAGGCTGTTTACTTAGGAT+GGG + chr2_3:24058076-24058095 Msa0284960:intron 40.0%
GAGTAAACCTTGCTGATGAT+GGG - chr2_3:24058129-24058148 None:intergenic 40.0%
AGGTTTACTCGAGGAAATGA+AGG + chr2_3:24058139-24058158 Msa0284960:intron 40.0%
GGTTTACTCGAGGAAATGAA+GGG + chr2_3:24058140-24058159 Msa0284960:intron 40.0%
CAGGAGAAAATATCTGACTC+TGG + chr2_3:24058285-24058304 Msa0284960:intron 40.0%
GAGCCTCTACATACAGAAAA+TGG - chr2_3:24058315-24058334 None:intergenic 40.0%
CCTAAGTATAAGAGTCCATG+TGG - chr2_3:24058415-24058434 None:intergenic 40.0%
CCACATGGACTCTTATACTT+AGG + chr2_3:24058412-24058431 Msa0284960:intron 40.0%
ATGGACTCTTATACTTAGGC+TGG + chr2_3:24058416-24058435 Msa0284960:intron 40.0%
GATTAATAAGAGCCATCTGG+AGG - chr2_3:24058490-24058509 None:intergenic 40.0%
GTCGATTAATAAGAGCCATC+TGG - chr2_3:24058493-24058512 None:intergenic 40.0%
TTCATCACTTGCACATGCTA+AGG - chr2_3:24058580-24058599 None:intergenic 40.0%
AATAGGGAAGTTATGGGACA+AGG + chr2_3:24058909-24058928 Msa0284960:intron 40.0%
ATAGGGAAGTTATGGGACAA+GGG + chr2_3:24058910-24058929 Msa0284960:intron 40.0%
AAGTTATGGGACAAGGGAAA+GGG + chr2_3:24058916-24058935 Msa0284960:intron 40.0%
!! GGGATTCTGTTAGTTGGTAA+AGG + chr2_3:24058939-24058958 Msa0284960:intron 40.0%
!! TTAGTTGGTAAAGGATTGGG+TGG + chr2_3:24058948-24058967 Msa0284960:intron 40.0%
!! TAGTTGGTAAAGGATTGGGT+GGG + chr2_3:24058949-24058968 Msa0284960:intron 40.0%
TTCCCAAATGTTCGAGAGTT+GGG - chr2_3:24058980-24058999 None:intergenic 40.0%
AGTCGTTACAAATATGGGCA+GGG - chr2_3:24059124-24059143 None:intergenic 40.0%
TAGTCGTTACAAATATGGGC+AGG - chr2_3:24059125-24059144 None:intergenic 40.0%
TGCCCATATTTGTAACGACT+AGG + chr2_3:24059124-24059143 Msa0284960:intron 40.0%
!!! GGATTAGTTTTGCAGTTTGC+AGG - chr2_3:24059163-24059182 None:intergenic 40.0%
TCATGGTTGTCAAACTCTCT+AGG + chr2_3:24059321-24059340 Msa0284960:intron 40.0%
!! AGCTTTGGAACTGAGATTCA+AGG - chr2_3:24059710-24059729 None:intergenic 40.0%
CTCTTAGCATAAACGAAACC+AGG + chr2_3:24059728-24059747 Msa0284960:intron 40.0%
!!! TGTTCGTAGTTTTTGGTTCC+TGG - chr2_3:24059749-24059768 None:intergenic 40.0%
!!! TTCAATTTTGGTTTGTGGCC+TGG + chr2_3:24059997-24060016 Msa0284960:intron 40.0%
CCTATTGAGAACACAAAACC+AGG - chr2_3:24060018-24060037 None:intergenic 40.0%
!!! CCTGGTTTTGTGTTCTCAAT+AGG + chr2_3:24060015-24060034 Msa0284960:intron 40.0%
ATATGACACCTTTAGTGTGC+TGG + chr2_3:24060122-24060141 Msa0284960:intron 40.0%
TATGACACCTTTAGTGTGCT+GGG + chr2_3:24060123-24060142 Msa0284960:intron 40.0%
GGCTCTATCTATAGACAATG+TGG - chr2_3:24060169-24060188 None:intergenic 40.0%
GAGCCTTCGTATTACTTACA+AGG + chr2_3:24060184-24060203 Msa0284960:intron 40.0%
CTCCATGATTGTGACCAAAA+CGG + chr2_3:24060339-24060358 Msa0284960:intron 40.0%
!! AACCGTTTTGGTCACAATCA+TGG - chr2_3:24060344-24060363 None:intergenic 40.0%
ACCAAAACGGTTCATAGTTC+TGG + chr2_3:24060352-24060371 Msa0284960:intron 40.0%
! ACCAGAACTATGAACCGTTT+TGG - chr2_3:24060356-24060375 None:intergenic 40.0%
TGAAGGGAACTATGAGGAAA+AGG + chr2_3:24060747-24060766 Msa0284960:CDS 40.0%
!! GCAAATTTTAATGCAGCTGC+CGG + chr2_3:24060835-24060854 Msa0284960:three_prime_UTR 40.0%
!! GGACTCAAGTTGGATAACAA+TGG + chr2_3:24060856-24060875 Msa0284960:three_prime_UTR 40.0%
!! TCAAGTTGGATAACAATGGG+TGG + chr2_3:24060860-24060879 Msa0284960:three_prime_UTR 40.0%
! CAAGTTGGATAACAATGGGT+GGG + chr2_3:24060861-24060880 Msa0284960:three_prime_UTR 40.0%
ATAATCAGACGCAGTGAAAG+TGG + chr2_3:24061123-24061142 Msa0284960:three_prime_UTR 40.0%
ACCAAACTCACCGATCGAAA+AGG + chr2_3:24055031-24055050 Msa0284960:five_prime_UTR 45.0%
! ACCTTTTCGATCGGTGAGTT+TGG - chr2_3:24055035-24055054 None:intergenic 45.0%
! TGTGTTTGAGATTGTGGGGT+TGG + chr2_3:24055244-24055263 Msa0284960:intron 45.0%
TCAGTGACATTGGCACATGT+CGG + chr2_3:24055544-24055563 Msa0284960:intron 45.0%
GATGATGAGGTAAGCCAGTT+AGG + chr2_3:24055805-24055824 Msa0284960:intron 45.0%
AGGTAAGCCAGTTAGGGATA+GGG + chr2_3:24055812-24055831 Msa0284960:intron 45.0%
CTGTTATCCCTATCCCTAAC+TGG - chr2_3:24055822-24055841 None:intergenic 45.0%
GCTTATCAGTGAGCGTATAC+CGG + chr2_3:24055887-24055906 Msa0284960:intron 45.0%
TTGGTGGAGACTTCATGTGT+AGG + chr2_3:24055979-24055998 Msa0284960:intron 45.0%
TGGTGGAGACTTCATGTGTA+GGG + chr2_3:24055980-24055999 Msa0284960:intron 45.0%
TTCTTGTCCTGTTGCGAGAT+GGG + chr2_3:24056351-24056370 Msa0284960:CDS 45.0%
! CGAGATGGGCGAAAACTTTT+GGG + chr2_3:24056365-24056384 Msa0284960:CDS 45.0%
! GATTTAGGACTTGGGAAAGG+AGG + chr2_3:24056727-24056746 Msa0284960:intron 45.0%
GACACACATGTCATATGTGG+TGG - chr2_3:24056758-24056777 None:intergenic 45.0%
GTCAGAGGCTGACATAAGAA+AGG + chr2_3:24056775-24056794 Msa0284960:CDS 45.0%
ACACACTTCACCAAGAGTAG+GGG - chr2_3:24057844-24057863 None:intergenic 45.0%
GACACACTTCACCAAGAGTA+GGG - chr2_3:24057845-24057864 None:intergenic 45.0%
AGACACACTTCACCAAGAGT+AGG - chr2_3:24057846-24057865 None:intergenic 45.0%
ATCTGCCCTTGACAATAGAC+TGG + chr2_3:24058023-24058042 Msa0284960:intron 45.0%
CATTTCTGATAGGACACCTG+AGG + chr2_3:24058058-24058077 Msa0284960:intron 45.0%
ACACCTGAGGCTGTTTACTT+AGG + chr2_3:24058071-24058090 Msa0284960:intron 45.0%
CATCCTAAGTAAACAGCCTC+AGG - chr2_3:24058077-24058096 None:intergenic 45.0%
CTGAGGCTGTTTACTTAGGA+TGG + chr2_3:24058075-24058094 Msa0284960:intron 45.0%
CGAGTAAACCTTGCTGATGA+TGG - chr2_3:24058130-24058149 None:intergenic 45.0%
TCATCAGCAAGGTTTACTCG+AGG + chr2_3:24058130-24058149 Msa0284960:intron 45.0%
TTACTCGAGGAAATGAAGGG+TGG + chr2_3:24058143-24058162 Msa0284960:intron 45.0%
TACTCGAGGAAATGAAGGGT+GGG + chr2_3:24058144-24058163 Msa0284960:intron 45.0%
AGGGGACTGATAATAGGTGT+TGG + chr2_3:24058231-24058250 Msa0284960:intron 45.0%
GGGGACTGATAATAGGTGTT+GGG + chr2_3:24058232-24058251 Msa0284960:intron 45.0%
! GGGACTGATAATAGGTGTTG+GGG + chr2_3:24058233-24058252 Msa0284960:intron 45.0%
! TGGAGGGAAGATTTTGCGAA+GGG - chr2_3:24058473-24058492 None:intergenic 45.0%
GAAGTTATGGGACAAGGGAA+AGG + chr2_3:24058915-24058934 Msa0284960:intron 45.0%
AGTTATGGGACAAGGGAAAG+GGG + chr2_3:24058917-24058936 Msa0284960:intron 45.0%
AAAGGGGGGATTCTGTTAGT+TGG + chr2_3:24058933-24058952 Msa0284960:intron 45.0%
AGACCCAACTCTCGAACATT+TGG + chr2_3:24058974-24058993 Msa0284960:intron 45.0%
GACCCAACTCTCGAACATTT+GGG + chr2_3:24058975-24058994 Msa0284960:intron 45.0%
CTTCCCAAATGTTCGAGAGT+TGG - chr2_3:24058981-24059000 None:intergenic 45.0%
CAACTCTCGAACATTTGGGA+AGG + chr2_3:24058979-24058998 Msa0284960:intron 45.0%
GTCGTTACAAATATGGGCAG+GGG - chr2_3:24059123-24059142 None:intergenic 45.0%
GTTAACTACGTCCGTACCAT+TGG + chr2_3:24059238-24059257 Msa0284960:intron 45.0%
! ATTTGTTGCGGCAAACCCTA+TGG - chr2_3:24059287-24059306 None:intergenic 45.0%
TAGGGTTTGCCGCAACAAAT+TGG + chr2_3:24059287-24059306 Msa0284960:intron 45.0%
CGCATATGCATATGCAGAGT+CGG - chr2_3:24059639-24059658 None:intergenic 45.0%
CCATTTGCAAAGGAGGTGAA+CGG + chr2_3:24059679-24059698 Msa0284960:intron 45.0%
AGAGGGAAGGATAGTGTGAT+TGG - chr2_3:24059861-24059880 None:intergenic 45.0%
TGGATAGTCCCCCATAATTG+TGG + chr2_3:24060049-24060068 Msa0284960:intron 45.0%
AAAGGGTGGCCACAATTATG+GGG - chr2_3:24060061-24060080 None:intergenic 45.0%
CAAAGGGTGGCCACAATTAT+GGG - chr2_3:24060062-24060081 None:intergenic 45.0%
ACCTTTAGTGTGCTGGGTTT+AGG + chr2_3:24060129-24060148 Msa0284960:intron 45.0%
CCTTTAGTGTGCTGGGTTTA+GGG + chr2_3:24060130-24060149 Msa0284960:intron 45.0%
CTTTAGTGTGCTGGGTTTAG+GGG + chr2_3:24060131-24060150 Msa0284960:intron 45.0%
TTTAGTGTGCTGGGTTTAGG+GGG + chr2_3:24060132-24060151 Msa0284960:intron 45.0%
TAGGGAAAGCCGACATTTCT+AGG - chr2_3:24060502-24060521 None:intergenic 45.0%
GAGGAACTGTCGATCATGTA+GGG - chr2_3:24060520-24060539 None:intergenic 45.0%
TGAGGAACTGTCGATCATGT+AGG - chr2_3:24060521-24060540 None:intergenic 45.0%
GTGATCTGAAGGGAACTATG+AGG + chr2_3:24060741-24060760 Msa0284960:CDS 45.0%
GGGAACTATGAGGAAAAGGA+TGG + chr2_3:24060751-24060770 Msa0284960:CDS 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr2_3:24059043-24059062 Msa0284960:intron 5.0%
ATTATCGATGTCGGGCGTGT+CGG - chr2_3:24055474-24055493 None:intergenic 50.0%
CGGTGTGATGTCAGTGACAT+TGG + chr2_3:24055534-24055553 Msa0284960:intron 50.0%
ACATTGGCACATGTCGGACA+CGG + chr2_3:24055550-24055569 Msa0284960:intron 50.0%
GAGGTAAGCCAGTTAGGGAT+AGG + chr2_3:24055811-24055830 Msa0284960:intron 50.0%
TGGAGACTTCATGTGTAGGG+TGG + chr2_3:24055983-24056002 Msa0284960:intron 50.0%
GGAGACTTCATGTGTAGGGT+GGG + chr2_3:24055984-24056003 Msa0284960:intron 50.0%
CTTCTTGTCCTGTTGCGAGA+TGG + chr2_3:24056350-24056369 Msa0284960:CDS 50.0%
! GCGAGATGGGCGAAAACTTT+TGG + chr2_3:24056364-24056383 Msa0284960:CDS 50.0%
GCGTGTGAACGAGTGATTGT+TGG + chr2_3:24056542-24056561 Msa0284960:CDS 50.0%
ACTCGAGGAAATGAAGGGTG+GGG + chr2_3:24058145-24058164 Msa0284960:intron 50.0%
!!! GATTTTGCGAAGGGCACTGA+TGG - chr2_3:24058464-24058483 None:intergenic 50.0%
! CTGGAGGGAAGATTTTGCGA+AGG - chr2_3:24058474-24058493 None:intergenic 50.0%
CGCAAAATCTTCCCTCCAGA+TGG + chr2_3:24058475-24058494 Msa0284960:intron 50.0%
GTTATGGGACAAGGGAAAGG+GGG + chr2_3:24058918-24058937 Msa0284960:intron 50.0%
TTATGGGACAAGGGAAAGGG+GGG + chr2_3:24058919-24058938 Msa0284960:intron 50.0%
GTTACAAATATGGGCAGGGG+TGG - chr2_3:24059120-24059139 None:intergenic 50.0%
CCGTTCACCTCCTTTGCAAA+TGG - chr2_3:24059682-24059701 None:intergenic 50.0%
AGCTAACTCCAGCTCCAACA+AGG + chr2_3:24059830-24059849 Msa0284960:intron 50.0%
GCTAACTCCAGCTCCAACAA+GGG + chr2_3:24059831-24059850 Msa0284960:intron 50.0%
CTAACTCCAGCTCCAACAAG+GGG + chr2_3:24059832-24059851 Msa0284960:intron 50.0%
TAACTCCAGCTCCAACAAGG+GGG + chr2_3:24059833-24059852 Msa0284960:intron 50.0%
AAGGGTGGCCACAATTATGG+GGG - chr2_3:24060060-24060079 None:intergenic 50.0%
GCAAAGGGTGGCCACAATTA+TGG - chr2_3:24060063-24060082 None:intergenic 50.0%
CCCTAAACCCAGCACACTAA+AGG - chr2_3:24060133-24060152 None:intergenic 50.0%
ACGCGATGCTAGTGATCTGA+AGG + chr2_3:24060730-24060749 Msa0284960:CDS 50.0%
CGCGATGCTAGTGATCTGAA+GGG + chr2_3:24060731-24060750 Msa0284960:CDS 50.0%
CATTGGCACATGTCGGACAC+GGG + chr2_3:24055551-24055570 Msa0284960:intron 55.0%
! GTTTTCGCCCATCTCGCAAC+AGG - chr2_3:24056361-24056380 None:intergenic 55.0%
AAAGGGGCCCATCATCAGCA+AGG + chr2_3:24058119-24058138 Msa0284960:intron 55.0%
TATGGGCAGGGGTGGTGTTT+GGG - chr2_3:24059112-24059131 None:intergenic 55.0%
ATATGGGCAGGGGTGGTGTT+TGG - chr2_3:24059113-24059132 None:intergenic 55.0%
!! GAGTCGGTGTTGCAACTGTG+AGG - chr2_3:24059623-24059642 None:intergenic 55.0%
! TGTGATTGGCTCCCCCTTGT+TGG - chr2_3:24059847-24059866 None:intergenic 55.0%
GGGGTGGTGTTTGGGAAGAG+AGG - chr2_3:24059104-24059123 None:intergenic 60.0%
GTGTGCTGGGTTTAGGGGGT+AGG + chr2_3:24060136-24060155 Msa0284960:intron 60.0%
TGCAGCTGCCGGACTCAAGT+TGG + chr2_3:24060846-24060865 Msa0284960:three_prime_UTR 60.0%
TGGCTCCCCCTTGTTGGAGC+TGG - chr2_3:24059841-24059860 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 24054856 24061203 24054856 ID=Msa0284960;Name=Msa0284960
chr2_3 mRNA 24054856 24061203 24054856 ID=Msa0284960-mRNA-1;Parent=Msa0284960;Name=Msa0284960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=219|1|1|1|0.6|0.83|6|410|128
chr2_3 exon 24054856 24055052 24054856 ID=Msa0284960-mRNA-1:exon:9089;Parent=Msa0284960-mRNA-1
chr2_3 exon 24055319 24055401 24055319 ID=Msa0284960-mRNA-1:exon:9090;Parent=Msa0284960-mRNA-1
chr2_3 exon 24056345 24056413 24056345 ID=Msa0284960-mRNA-1:exon:9091;Parent=Msa0284960-mRNA-1
chr2_3 exon 24056522 24056637 24056522 ID=Msa0284960-mRNA-1:exon:9092;Parent=Msa0284960-mRNA-1
chr2_3 exon 24056734 24056796 24056734 ID=Msa0284960-mRNA-1:exon:9093;Parent=Msa0284960-mRNA-1
chr2_3 exon 24060716 24061203 24060716 ID=Msa0284960-mRNA-1:exon:9094;Parent=Msa0284960-mRNA-1
chr2_3 five_prime_UTR 24054856 24055052 24054856 ID=Msa0284960-mRNA-1:five_prime_utr;Parent=Msa0284960-mRNA-1
chr2_3 five_prime_UTR 24055319 24055340 24055319 ID=Msa0284960-mRNA-1:five_prime_utr;Parent=Msa0284960-mRNA-1
chr2_3 CDS 24055341 24055401 24055341 ID=Msa0284960-mRNA-1:cds;Parent=Msa0284960-mRNA-1
chr2_3 CDS 24056345 24056413 24056345 ID=Msa0284960-mRNA-1:cds;Parent=Msa0284960-mRNA-1
chr2_3 CDS 24056522 24056637 24056522 ID=Msa0284960-mRNA-1:cds;Parent=Msa0284960-mRNA-1
chr2_3 CDS 24056734 24056796 24056734 ID=Msa0284960-mRNA-1:cds;Parent=Msa0284960-mRNA-1
chr2_3 CDS 24060716 24060793 24060716 ID=Msa0284960-mRNA-1:cds;Parent=Msa0284960-mRNA-1
chr2_3 three_prime_UTR 24060794 24061203 24060794 ID=Msa0284960-mRNA-1:three_prime_utr;Parent=Msa0284960-mRNA-1
Gene Sequence

>Msa0284960

ATGTCTTGGGCTGCACCTGATGAGCTTTTACTCTCTACTTCTCTTGCTACATATCTTGACAAAAAACTTCTTGTCCTGTTGCGAGATGGGCGAAAACTTTTGGGTTTATTACGCTCATTTGATCAATTTGCTAATGTTGTTCTAGAAGGTGCGTGTGAACGAGTGATTGTTGGTGATCTTTATTGTGATGTCCCTTTAGGCCTTTATGTAATTCGTGGGGAAAATGTTGTCTTAATTGGAGAGCTGGACTTGGGAAAGGAGGAGCTTCCACCACATATGACATGTGTGTCAGAGGCTGACATAAGAAAGGCTCAAAAAGCAGAACGCGATGCTAGTGATCTGAAGGGAACTATGAGGAAAAGGATGGAATTCCTTGATTTTGACTAA
Protein sequence

>Msa0284960

MSWAAPDELLLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDLYCDVPLGLYVIRGENVVLIGELDLGKEELPPHMTCVSEADIRKAQKAERDASDLKGTMRKRMEFLDFD*