AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121820 MtrunA17_Chr1g0181281 100.000 112 0 0 1 112 1 112 8.51e-77 221
Msa0121820 MtrunA17_Chr7g0264091 80.374 107 21 0 5 111 3 109 6.24e-55 166
Msa0121820 MtrunA17_Chr7g0215731 58.095 105 44 0 7 111 131 235 6.27e-38 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121820 AT3G01390.4 74.766 107 27 0 5 111 3 109 1.80e-42 135
Msa0121820 AT3G01390.2 74.766 107 27 0 5 111 3 109 1.80e-42 135
Msa0121820 AT3G01390.1 74.766 107 27 0 5 111 3 109 1.80e-42 135
Msa0121820 AT3G01390.3 74.766 107 27 0 5 111 3 109 1.80e-42 135
Msa0121820 AT4G23710.1 67.327 101 33 0 10 110 4 104 3.46e-40 129
Msa0121820 AT4G25950.1 56.604 106 44 1 5 110 3 106 3.82e-34 114
Msa0121820 AT4G25950.2 65.079 63 22 0 5 67 3 65 1.65e-20 79.0

Find 49 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCACAATCAACATAATTT+AGG 0.205551 1_3:-47964236 None:intergenic
GATCAAATAGAATGAAATTC+AGG 0.262717 1_3:-47964551 None:intergenic
TCGTATCGGGAATGAATTAT+TGG 0.289418 1_3:-47960753 None:intergenic
ATAACGAGAGGGGCTTGTTT+AGG 0.344214 1_3:-47964466 None:intergenic
ATAGAATGAAATTCAGGGTT+TGG 0.344304 1_3:-47964545 None:intergenic
TCACAGTTGTTACATGCTTA+AGG 0.347547 1_3:-47964168 None:intergenic
ACCACAATCAACATAATTTA+GGG 0.351494 1_3:-47964235 None:intergenic
ATACAGAGTAGCGGTGATTC+TGG 0.360489 1_3:+47964049 Msa0121820:intron
TTATTGGATTCAGAGGAAAT+AGG 0.381634 1_3:-47960737 None:intergenic
AGCCAAAGAAGAGGCTGAAA+AGG 0.415151 1_3:+47963875 Msa0121820:CDS
TGAGTGAAGACTAAAATGTT+AGG 0.423146 1_3:+47964433 Msa0121820:three_prime_UTR
TCCTTGACCCCTGTTGGATG+TGG 0.426476 1_3:-47961677 None:intergenic
GAATGGCATCCACATCCAAC+AGG 0.432782 1_3:+47961668 Msa0121820:intron
AATTCCTCCTTGACCCCTGT+TGG 0.435539 1_3:-47961683 None:intergenic
TGAAATTCAGGGTTTGGAAA+GGG 0.470722 1_3:-47964539 None:intergenic
TTATTTCTTAATGTAAGTAC+AGG 0.471378 1_3:+47964485 Msa0121820:three_prime_UTR
AAAAGGAGATTGCTGCATAC+CGG 0.478243 1_3:+47963892 Msa0121820:CDS
ATCAAATAGAATGAAATTCA+GGG 0.490044 1_3:-47964550 None:intergenic
AGGAACCTTTGATGATTTGT+TGG 0.492255 1_3:+47964197 Msa0121820:exon
CCCCTAAATTATGTTGATTG+TGG 0.515533 1_3:+47964234 Msa0121820:three_prime_UTR
AGGAGGAATTCAGCAGTTGT+TGG 0.519580 1_3:+47961696 Msa0121820:CDS
ATGAAATTCAGGGTTTGGAA+AGG 0.535178 1_3:-47964540 None:intergenic
AAAGGAGATTGCTGCATACC+GGG 0.538412 1_3:+47963893 Msa0121820:CDS
TTTCTTAATGTAAGTACAGG+AGG 0.543077 1_3:+47964488 Msa0121820:three_prime_UTR
GAAATTCAGGGTTTGGAAAG+GGG 0.543481 1_3:-47964538 None:intergenic
TCCACATCCAACAGGGGTCA+AGG 0.545599 1_3:+47961676 Msa0121820:CDS
TCCTTCGTCGTGTTCGCATG+TGG 0.546947 1_3:+47960639 None:intergenic
AGAAGCGTACCTATCGTATC+GGG 0.549425 1_3:-47960766 None:intergenic
TACATTAAGAAATAACGAGA+GGG 0.549764 1_3:-47964477 None:intergenic
TGCATACCGGGCTAAGCTTG+AGG 0.552923 1_3:+47963905 Msa0121820:CDS
GAGAAGCGTACCTATCGTAT+CGG 0.559571 1_3:-47960767 None:intergenic
TGTTACATGCTTAAGGAGCA+TGG 0.571889 1_3:-47964161 None:intergenic
ACTCGGCCTCAAGCTTAGCC+CGG 0.584871 1_3:-47963911 None:intergenic
GAATGAATTATTGGATTCAG+AGG 0.605244 1_3:-47960744 None:intergenic
CTGCACCAACAAATCATCAA+AGG 0.605516 1_3:-47964202 None:intergenic
TAATTCATTCCCGATACGAT+AGG 0.613082 1_3:+47960757 Msa0121820:five_prime_UTR
CGAGTTTCAAAAGAAAGTGT+CGG 0.626015 1_3:+47963929 Msa0121820:CDS
TTCCTATGAATACAGAGTAG+CGG 0.626460 1_3:+47964040 Msa0121820:intron
TATTTGAATACATCGCAGCA+AGG 0.647005 1_3:-47964322 None:intergenic
GTTGAAACAAGCCAAAGAAG+AGG 0.654824 1_3:+47963866 Msa0121820:CDS
CCACAATCAACATAATTTAG+GGG 0.675532 1_3:-47964234 None:intergenic
AATCCATCACCTGAAAACAG+AGG 0.680056 1_3:+47964111 Msa0121820:CDS
ACATTAAGAAATAACGAGAG+GGG 0.681614 1_3:-47964476 None:intergenic
TTACATTAAGAAATAACGAG+AGG 0.682812 1_3:-47964478 None:intergenic
AATGGCATCCACATCCAACA+GGG 0.688516 1_3:+47961669 Msa0121820:exon
CAGCTGAACAAGAAGCACAA+CGG 0.700252 1_3:+47961719 Msa0121820:CDS
ACATCCAACAGGGGTCAAGG+AGG 0.701671 1_3:+47961679 Msa0121820:CDS
GATTTGTTGGTGCAGCTGAG+CGG 0.715099 1_3:+47964210 Msa0121820:three_prime_UTR
ATGGCATCCACATCCAACAG+GGG 0.715900 1_3:+47961670 Msa0121820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATACACAAAATAAATATT+CGG - chr1_3:47961535-47961554 None:intergenic 15.0%
!! ACAATAATAGTATAATAACA+TGG + chr1_3:47963149-47963168 Msa0121820:intron 15.0%
!! TAAAGTTACAATATATAAAG+TGG + chr1_3:47963342-47963361 Msa0121820:intron 15.0%
!! AAAGTTACAATATATAAAGT+GGG + chr1_3:47963343-47963362 Msa0121820:intron 15.0%
!!! TTTTAATTCTACATCAAATA+AGG + chr1_3:47963372-47963391 Msa0121820:intron 15.0%
!! TTTAATTCTACATCAAATAA+GGG + chr1_3:47963373-47963392 Msa0121820:intron 15.0%
!! AGATGATTAATTCAATTATG+TGG + chr1_3:47961085-47961104 Msa0121820:intron 20.0%
!! TTTCAGTGAATTAGAATATA+TGG + chr1_3:47961564-47961583 Msa0121820:intron 20.0%
!!! TTTTTCATAAACTATTGTAG+AGG - chr1_3:47962104-47962123 None:intergenic 20.0%
!! AGTTTATGAAAAATAGCTTA+TGG + chr1_3:47962111-47962130 Msa0121820:intron 20.0%
!! AATTATTTGAGCATATCTAT+TGG + chr1_3:47962210-47962229 Msa0121820:intron 20.0%
!! AAATAAGTTGTTCATTCAAA+CGG + chr1_3:47962437-47962456 Msa0121820:intron 20.0%
!! TAATTAAGCACTTATCATAT+AGG - chr1_3:47962472-47962491 None:intergenic 20.0%
!! AAATAGCTCTTATTCTTATA+AGG + chr1_3:47962533-47962552 Msa0121820:intron 20.0%
!!! TTGTTTGGATTTTAAAGAAA+TGG + chr1_3:47962747-47962766 Msa0121820:intron 20.0%
!! TACCATTATTTAAATGGAAT+AGG - chr1_3:47963557-47963576 None:intergenic 20.0%
!! ATTCCATTTAAATAATGGTA+TGG + chr1_3:47963557-47963576 Msa0121820:intron 20.0%
!! TATCATAGAATAAGATAAAG+CGG - chr1_3:47963994-47964013 None:intergenic 20.0%
!!! CTAGATCCAAAAATAATTTT+GGG - chr1_3:47964263-47964282 None:intergenic 20.0%
!!! TCTAGATCCAAAAATAATTT+TGG - chr1_3:47964264-47964283 None:intergenic 20.0%
!!! ATTTTTGGATCTAGATATTT+TGG + chr1_3:47964269-47964288 Msa0121820:three_prime_UTR 20.0%
!!! TTATTTCTTAATGTAAGTAC+AGG + chr1_3:47964485-47964504 Msa0121820:three_prime_UTR 20.0%
!! ATCAAATAGAATGAAATTCA+GGG - chr1_3:47964553-47964572 None:intergenic 20.0%
!!! TTGTTTCTGTTTTGTTTTGT+TGG + chr1_3:47960698-47960717 Msa0121820:five_prime_UTR 25.0%
! AGTAAGAAAAAGAGTTGAAT+TGG - chr1_3:47960817-47960836 None:intergenic 25.0%
! ATCTGAATATGAAAGTGAAA+AGG - chr1_3:47960842-47960861 None:intergenic 25.0%
! GATGGTTAATGAATACAATA+AGG + chr1_3:47961129-47961148 Msa0121820:intron 25.0%
!!! AATTAATTGTGTTGAGTTGA+TGG - chr1_3:47961171-47961190 None:intergenic 25.0%
! TGAACTTCATTATTTGATCA+TGG - chr1_3:47961196-47961215 None:intergenic 25.0%
! TGAACTTCATTATTTGATCA+TGG - chr1_3:47961196-47961215 None:intergenic 25.0%
!!! CTTGTTATTCATTTCAGATT+TGG + chr1_3:47961430-47961449 Msa0121820:intron 25.0%
!! ATCATGATTTCATCCAATTT+TGG + chr1_3:47961820-47961839 Msa0121820:intron 25.0%
!! TCATGATTTCATCCAATTTT+GGG + chr1_3:47961821-47961840 Msa0121820:intron 25.0%
! AAACTATTGTAGAGGATTTA+TGG - chr1_3:47962096-47962115 None:intergenic 25.0%
!!! TCAAAATAGCTTTATACTTG+AGG + chr1_3:47962174-47962193 Msa0121820:intron 25.0%
! TCAAATAATTCAATCCAAAC+AGG - chr1_3:47962200-47962219 None:intergenic 25.0%
! TTTATGACATGTTCATAAAC+AGG + chr1_3:47962282-47962301 Msa0121820:intron 25.0%
! AATAAGTTGTTCATTCAAAC+GGG + chr1_3:47962438-47962457 Msa0121820:intron 25.0%
! TAAAAAATTTACTGCAGAAG+TGG + chr1_3:47962593-47962612 Msa0121820:intron 25.0%
! TGGAATGACATTATATTGTT+TGG + chr1_3:47962732-47962751 Msa0121820:intron 25.0%
!!! TTGGATTTTAAAGAAATGGA+AGG + chr1_3:47962751-47962770 Msa0121820:intron 25.0%
!!! TTTTAAAGAAATGGAAGGAT+TGG + chr1_3:47962756-47962775 Msa0121820:intron 25.0%
! TAAAACAACAATTCAAGAAG+AGG - chr1_3:47963094-47963113 None:intergenic 25.0%
!! GTTTCTTTTTCTTTTTACCT+TGG + chr1_3:47963122-47963141 Msa0121820:intron 25.0%
! ATACTATTATTGTTGAACCA+AGG - chr1_3:47963142-47963161 None:intergenic 25.0%
!! TCTAAACAAAAGTTTTGCTT+TGG - chr1_3:47963244-47963263 None:intergenic 25.0%
! TAAAAATACATAGTAGCTTG+TGG + chr1_3:47963309-47963328 Msa0121820:intron 25.0%
! GTCCTATTCCATTTAAATAA+TGG + chr1_3:47963552-47963571 Msa0121820:intron 25.0%
! CATCCATACCATTATTTAAA+TGG - chr1_3:47963563-47963582 None:intergenic 25.0%
! TTCAAATAAGCGAAATAGAA+TGG - chr1_3:47963603-47963622 None:intergenic 25.0%
! CCAATATAAAAAGAATAACG+AGG - chr1_3:47963671-47963690 None:intergenic 25.0%
!! CCTCGTTATTCTTTTTATAT+TGG + chr1_3:47963668-47963687 Msa0121820:intron 25.0%
! AACTAATCAATGTTCTATTC+TGG + chr1_3:47963816-47963835 Msa0121820:intron 25.0%
! ATTTCCACTACTAGAAAAAT+CGG + chr1_3:47963839-47963858 Msa0121820:intron 25.0%
! ACCACAATCAACATAATTTA+GGG - chr1_3:47964238-47964257 None:intergenic 25.0%
! TACCACAATCAACATAATTT+AGG - chr1_3:47964239-47964258 None:intergenic 25.0%
!! TGGTATCCCAAAATTATTTT+TGG + chr1_3:47964254-47964273 Msa0121820:three_prime_UTR 25.0%
! TACATTAAGAAATAACGAGA+GGG - chr1_3:47964480-47964499 None:intergenic 25.0%
! TTACATTAAGAAATAACGAG+AGG - chr1_3:47964481-47964500 None:intergenic 25.0%
! GATCAAATAGAATGAAATTC+AGG - chr1_3:47964554-47964573 None:intergenic 25.0%
TTATTGGATTCAGAGGAAAT+AGG - chr1_3:47960740-47960759 None:intergenic 30.0%
GAATGAATTATTGGATTCAG+AGG - chr1_3:47960747-47960766 None:intergenic 30.0%
TCAACACTATTAATCGACAA+CGG - chr1_3:47961006-47961025 None:intergenic 30.0%
! TTTGAGATTTGTGATTCTGA+TGG + chr1_3:47961028-47961047 Msa0121820:intron 30.0%
ATTATGTTCATCAGATCAGA+TGG + chr1_3:47961111-47961130 Msa0121820:intron 30.0%
GATCATGGTTAATTAACCAT+CGG - chr1_3:47961242-47961261 None:intergenic 30.0%
ATACCTTGGTACATTCAATT+TGG + chr1_3:47961406-47961425 Msa0121820:intron 30.0%
ATGTAACTGTATAATCACTC+AGG - chr1_3:47961595-47961614 None:intergenic 30.0%
AAAACACGTAATCAGTTAAC+TGG - chr1_3:47961642-47961661 None:intergenic 30.0%
TAAGTATTTGTGAGACTACT+TGG + chr1_3:47962016-47962035 Msa0121820:intron 30.0%
AAGTATTTGTGAGACTACTT+GGG + chr1_3:47962017-47962036 Msa0121820:intron 30.0%
!!! GTTGTTTTAATAAGCTATGC+TGG - chr1_3:47962332-47962351 None:intergenic 30.0%
ATAAGTTGTTCATTCAAACG+GGG + chr1_3:47962439-47962458 Msa0121820:intron 30.0%
!!! TACTTGTTTTAAGCTCAGTT+TGG - chr1_3:47962505-47962524 None:intergenic 30.0%
TCTTATTCTTATAAGGCTGT+TGG + chr1_3:47962540-47962559 Msa0121820:intron 30.0%
!!! AAGTGGATTTTGACTTATGA+GGG + chr1_3:47962610-47962629 Msa0121820:intron 30.0%
ATAAGATCATCTCATCCTTA+GGG + chr1_3:47962660-47962679 Msa0121820:intron 30.0%
ATCAATTCAAAGATACCCTA+AGG - chr1_3:47962678-47962697 None:intergenic 30.0%
! TTAGGGTATCTTTGAATTGA+TGG + chr1_3:47962677-47962696 Msa0121820:intron 30.0%
TTTGAATTGATGGAACATAG+TGG + chr1_3:47962687-47962706 Msa0121820:intron 30.0%
TTGAATTGATGGAACATAGT+GGG + chr1_3:47962688-47962707 Msa0121820:intron 30.0%
TGAAAAGGAATAGAATGGAA+TGG + chr1_3:47962712-47962731 Msa0121820:intron 30.0%
AGCAAAATGAAGTGATATGA+TGG - chr1_3:47962815-47962834 None:intergenic 30.0%
ATCCTATACATCCCAAATTT+GGG - chr1_3:47962840-47962859 None:intergenic 30.0%
GGTGGATAATAAGGTTATAA+GGG - chr1_3:47962889-47962908 None:intergenic 30.0%
! TGGTGGATAATAAGGTTATA+AGG - chr1_3:47962890-47962909 None:intergenic 30.0%
!!! CACAAGATTGGTTTTAGAAT+AGG - chr1_3:47962969-47962988 None:intergenic 30.0%
!!! TGCAAGATAGGTTTTAGAAT+AGG - chr1_3:47963031-47963050 None:intergenic 30.0%
ACAAAAAGAGCAATGACTTA+AGG + chr1_3:47963284-47963303 Msa0121820:intron 30.0%
!!! GGATTTTTTCTTCAGTTTCT+TGG - chr1_3:47964096-47964115 None:intergenic 30.0%
TGTAACAACTGTGAAAAAGT+AGG + chr1_3:47964177-47964196 Msa0121820:CDS 30.0%
CCACAATCAACATAATTTAG+GGG - chr1_3:47964237-47964256 None:intergenic 30.0%
TGAGTGAAGACTAAAATGTT+AGG + chr1_3:47964433-47964452 Msa0121820:three_prime_UTR 30.0%
ACATTAAGAAATAACGAGAG+GGG - chr1_3:47964479-47964498 None:intergenic 30.0%
TTTCTTAATGTAAGTACAGG+AGG + chr1_3:47964488-47964507 Msa0121820:three_prime_UTR 30.0%
ATAGAATGAAATTCAGGGTT+TGG - chr1_3:47964548-47964567 None:intergenic 30.0%
TCGTATCGGGAATGAATTAT+TGG - chr1_3:47960756-47960775 None:intergenic 35.0%
TAATTCATTCCCGATACGAT+AGG + chr1_3:47960757-47960776 Msa0121820:five_prime_UTR 35.0%
TGTTAATTGTGTGTATCCGA+TGG + chr1_3:47961223-47961242 Msa0121820:intron 35.0%
TAAGCTGTTTGTGTTATCGT+TGG + chr1_3:47961370-47961389 Msa0121820:intron 35.0%
TGTTTGTGTTATCGTTGGAT+TGG + chr1_3:47961375-47961394 Msa0121820:intron 35.0%
AGACCAAATTGAATGTACCA+AGG - chr1_3:47961412-47961431 None:intergenic 35.0%
! TTACGTGTTTTTCCACAGAA+TGG + chr1_3:47961651-47961670 Msa0121820:intron 35.0%
ATTGTGAATGCTGCGAAAAA+TGG + chr1_3:47961742-47961761 Msa0121820:CDS 35.0%
TGGATGAAATCATGATTGCA+GGG - chr1_3:47961816-47961835 None:intergenic 35.0%
TTGGATGAAATCATGATTGC+AGG - chr1_3:47961817-47961836 None:intergenic 35.0%
AGCGTAATAAGACCCAAAAT+TGG - chr1_3:47961836-47961855 None:intergenic 35.0%
! AGTCTAAAGTGGGATTTAGT+TGG - chr1_3:47961884-47961903 None:intergenic 35.0%
! GTTCAAAGCTAGTCTAAAGT+GGG - chr1_3:47961894-47961913 None:intergenic 35.0%
! AGTTCAAAGCTAGTCTAAAG+TGG - chr1_3:47961895-47961914 None:intergenic 35.0%
!! TAGACTAGCTTTGAACTTCT+AGG + chr1_3:47961898-47961917 Msa0121820:intron 35.0%
TAAGTATTTGTGAGACTGCT+TGG + chr1_3:47961982-47962001 Msa0121820:intron 35.0%
!!! GAAGTGGATTTTGACTTATG+AGG + chr1_3:47962609-47962628 Msa0121820:intron 35.0%
CATAAGATCATCTCATCCTT+AGG + chr1_3:47962659-47962678 Msa0121820:intron 35.0%
TGGGATGAAAAGGAATAGAA+TGG + chr1_3:47962707-47962726 Msa0121820:intron 35.0%
AAGAAATGGAAGGATTGGAT+TGG + chr1_3:47962761-47962780 Msa0121820:intron 35.0%
GTATTGAAATAGATTCCACC+AGG - chr1_3:47962789-47962808 None:intergenic 35.0%
! TCATTTTGCTTCCCCAAATT+TGG + chr1_3:47962825-47962844 Msa0121820:intron 35.0%
! CATTTTGCTTCCCCAAATTT+GGG + chr1_3:47962826-47962845 Msa0121820:intron 35.0%
TCCTATACATCCCAAATTTG+GGG - chr1_3:47962839-47962858 None:intergenic 35.0%
CATCCTATACATCCCAAATT+TGG - chr1_3:47962841-47962860 None:intergenic 35.0%
! CAAATTTGGGATGTATAGGA+TGG + chr1_3:47962839-47962858 Msa0121820:intron 35.0%
AAAGAGGAAGAACACAAGAT+TGG - chr1_3:47962918-47962937 None:intergenic 35.0%
AATCTTGTGTTCTTCCTCTT+TGG + chr1_3:47962917-47962936 Msa0121820:intron 35.0%
GTTTGCAGCAAAGAATATAG+TGG + chr1_3:47963213-47963232 Msa0121820:intron 35.0%
AAACGATCCATACCATTTGA+TGG - chr1_3:47963451-47963470 None:intergenic 35.0%
GCATTTGATGGAACATAGTA+GGG - chr1_3:47963520-47963539 None:intergenic 35.0%
AGCATTTGATGGAACATAGT+AGG - chr1_3:47963521-47963540 None:intergenic 35.0%
CTATGTTCCATCAAATGCTA+TGG + chr1_3:47963522-47963541 Msa0121820:intron 35.0%
! AAAGCATCCATAGCATTTGA+TGG - chr1_3:47963532-47963551 None:intergenic 35.0%
!!! CGACACTTTCTTTTGAAACT+CGG - chr1_3:47963931-47963950 None:intergenic 35.0%
! CGAGTTTCAAAAGAAAGTGT+CGG + chr1_3:47963929-47963948 Msa0121820:CDS 35.0%
AGGAAAACATGCATGTAAGT+TGG - chr1_3:47964025-47964044 None:intergenic 35.0%
TTCCTATGAATACAGAGTAG+CGG + chr1_3:47964040-47964059 Msa0121820:intron 35.0%
TCACAGTTGTTACATGCTTA+AGG - chr1_3:47964171-47964190 None:intergenic 35.0%
! AGGAACCTTTGATGATTTGT+TGG + chr1_3:47964197-47964216 Msa0121820:exon 35.0%
! CCCCTAAATTATGTTGATTG+TGG + chr1_3:47964234-47964253 Msa0121820:three_prime_UTR 35.0%
!!! TGGATCTAGATATTTTGGTG+CGG + chr1_3:47964274-47964293 Msa0121820:three_prime_UTR 35.0%
TATTTGAATACATCGCAGCA+AGG - chr1_3:47964325-47964344 None:intergenic 35.0%
TGAAATTCAGGGTTTGGAAA+GGG - chr1_3:47964542-47964561 None:intergenic 35.0%
ATGAAATTCAGGGTTTGGAA+AGG - chr1_3:47964543-47964562 None:intergenic 35.0%
TGAGAAGCAAAGATCGATGA+TGG - chr1_3:47960865-47960884 None:intergenic 40.0%
GATTGGACAGGATTATACCT+TGG + chr1_3:47961392-47961411 Msa0121820:intron 40.0%
!! AGCTTTGAACTTCTAGGACT+AGG + chr1_3:47961904-47961923 Msa0121820:intron 40.0%
!! TTTGAACTTCTAGGACTAGG+AGG + chr1_3:47961907-47961926 Msa0121820:intron 40.0%
AGACTACTTGGGAGAACTTA+TGG + chr1_3:47962028-47962047 Msa0121820:intron 40.0%
CTTTATACTTGAGGCCTGTT+TGG + chr1_3:47962183-47962202 Msa0121820:intron 40.0%
TGAGCATATCTATTGGCCAT+TGG + chr1_3:47962217-47962236 Msa0121820:intron 40.0%
GTCACAAGTGTTTATGCCAA+TGG - chr1_3:47962236-47962255 None:intergenic 40.0%
ATTTGCAGCGAAGCTAAATG+AGG + chr1_3:47962564-47962583 Msa0121820:intron 40.0%
TTTGCAGCGAAGCTAAATGA+GGG + chr1_3:47962565-47962584 Msa0121820:intron 40.0%
! TGGAACATAGTGGGATGAAA+AGG + chr1_3:47962697-47962716 Msa0121820:intron 40.0%
! TCCCCAAATTTGGGATGTAT+AGG + chr1_3:47962835-47962854 Msa0121820:intron 40.0%
!! TGGTTGCATGGTGGATAATA+AGG - chr1_3:47962898-47962917 None:intergenic 40.0%
! AGAACACAAGATTGGTTGCA+TGG - chr1_3:47962910-47962929 None:intergenic 40.0%
CAATCTTGTGTTCTTCCTCT+CGG + chr1_3:47962916-47962935 Msa0121820:intron 40.0%
ACAGAGGAAGAATGCAAGAT+AGG - chr1_3:47963043-47963062 None:intergenic 40.0%
TATCTTGCATTCTTCCTCTG+TGG + chr1_3:47963042-47963061 Msa0121820:intron 40.0%
CTCTGTTCCATCAAATGGTA+TGG + chr1_3:47963441-47963460 Msa0121820:intron 40.0%
TTTGATGGAACATAGTAGGG+TGG - chr1_3:47963517-47963536 None:intergenic 40.0%
! ATGGATGCTTTGTTGCATTC+TGG + chr1_3:47963576-47963595 Msa0121820:intron 40.0%
TTCTTGATGTGCAATGAGCA+TGG + chr1_3:47963716-47963735 Msa0121820:intron 40.0%
TCTTGATGTGCAATGAGCAT+GGG + chr1_3:47963717-47963736 Msa0121820:intron 40.0%
CAATCACGTATAAACGCATG+AGG - chr1_3:47963757-47963776 None:intergenic 40.0%
AGTGTTCGCTAAAATGTGCA+TGG - chr1_3:47963785-47963804 None:intergenic 40.0%
!! CTAGCCGATTTTTCTAGTAG+TGG - chr1_3:47963846-47963865 None:intergenic 40.0%
CACTACTAGAAAAATCGGCT+AGG + chr1_3:47963844-47963863 Msa0121820:intron 40.0%
GTTGAAACAAGCCAAAGAAG+AGG + chr1_3:47963866-47963885 Msa0121820:CDS 40.0%
AAAAGGAGATTGCTGCATAC+CGG + chr1_3:47963892-47963911 Msa0121820:CDS 40.0%
AATCCATCACCTGAAAACAG+AGG + chr1_3:47964111-47964130 Msa0121820:CDS 40.0%
! TTCTATCAGCCTCTGTTTTC+AGG - chr1_3:47964123-47964142 None:intergenic 40.0%
TGTTACATGCTTAAGGAGCA+TGG - chr1_3:47964164-47964183 None:intergenic 40.0%
CTGCACCAACAAATCATCAA+AGG - chr1_3:47964205-47964224 None:intergenic 40.0%
GAAATTCAGGGTTTGGAAAG+GGG - chr1_3:47964541-47964560 None:intergenic 40.0%
! AGAAGCGTACCTATCGTATC+GGG - chr1_3:47960769-47960788 None:intergenic 45.0%
! GAGAAGCGTACCTATCGTAT+CGG - chr1_3:47960770-47960789 None:intergenic 45.0%
! GTGTTATCGTTGGATTGGAC+AGG + chr1_3:47961380-47961399 Msa0121820:intron 45.0%
AATGGCATCCACATCCAACA+GGG + chr1_3:47961669-47961688 Msa0121820:exon 45.0%
AGGAGGAATTCAGCAGTTGT+TGG + chr1_3:47961696-47961715 Msa0121820:CDS 45.0%
! CAGCTGAACAAGAAGCACAA+CGG + chr1_3:47961719-47961738 Msa0121820:CDS 45.0%
GATTGCAGGGCAAAGAACAT+TGG - chr1_3:47961803-47961822 None:intergenic 45.0%
! ACACAAGATTGGTTGCATGG+TGG - chr1_3:47962907-47962926 None:intergenic 45.0%
CCATTGTTGTAGAGCCAAAG+AGG - chr1_3:47962934-47962953 None:intergenic 45.0%
!! CCTCTTTGGCTCTACAACAA+TGG + chr1_3:47962931-47962950 Msa0121820:intron 45.0%
CGAGAGGAAGAACACAAGAT+TGG - chr1_3:47962981-47963000 None:intergenic 45.0%
TCCTCTCGGTTCTACAACAA+TGG + chr1_3:47962993-47963012 Msa0121820:intron 45.0%
CTCTGCTCTGTTCCATCAAA+TGG + chr1_3:47963436-47963455 Msa0121820:intron 45.0%
CATAGTAGGGTGGAACTGAA+CGG - chr1_3:47963487-47963506 None:intergenic 45.0%
TGGAACTGAACATAGTAGGG+TGG - chr1_3:47963497-47963516 None:intergenic 45.0%
GGGTGGAACTGAACATAGTA+GGG - chr1_3:47963500-47963519 None:intergenic 45.0%
AGGGTGGAACTGAACATAGT+AGG - chr1_3:47963501-47963520 None:intergenic 45.0%
AGCCAAAGAAGAGGCTGAAA+AGG + chr1_3:47963875-47963894 Msa0121820:CDS 45.0%
! CTCCTTTTCAGCCTCTTCTT+TGG - chr1_3:47963880-47963899 None:intergenic 45.0%
AAAGGAGATTGCTGCATACC+GGG + chr1_3:47963893-47963912 Msa0121820:CDS 45.0%
CACCGCTACTCTGTATTCAT+AGG - chr1_3:47964045-47964064 None:intergenic 45.0%
ATACAGAGTAGCGGTGATTC+TGG + chr1_3:47964049-47964068 Msa0121820:intron 45.0%
! ATAACGAGAGGGGCTTGTTT+AGG - chr1_3:47964469-47964488 None:intergenic 45.0%
TGGATGTGGATGCCATTCTG+TGG - chr1_3:47961666-47961685 None:intergenic 50.0%
GAATGGCATCCACATCCAAC+AGG + chr1_3:47961668-47961687 Msa0121820:intron 50.0%
ATGGCATCCACATCCAACAG+GGG + chr1_3:47961670-47961689 Msa0121820:CDS 50.0%
AATTCCTCCTTGACCCCTGT+TGG - chr1_3:47961686-47961705 None:intergenic 50.0%
AGGGCAAAGAACATTGGCAC+AGG - chr1_3:47961797-47961816 None:intergenic 50.0%
! GGAAGGATTGGATTGGAACC+TGG + chr1_3:47962768-47962787 Msa0121820:intron 50.0%
! AGGATTGGATTGGAACCTGG+TGG + chr1_3:47962771-47962790 Msa0121820:intron 50.0%
GCCATTGTTGTAGAACCGAG+AGG - chr1_3:47962997-47963016 None:intergenic 50.0%
ATACAGCAGCCACTGAAGCA+GGG - chr1_3:47963068-47963087 None:intergenic 50.0%
AATACAGCAGCCACTGAAGC+AGG - chr1_3:47963069-47963088 None:intergenic 50.0%
!!! CAGCCTCTGTTTTCAGGTGA+TGG - chr1_3:47964117-47964136 None:intergenic 50.0%
!! GATTTGTTGGTGCAGCTGAG+CGG + chr1_3:47964210-47964229 Msa0121820:three_prime_UTR 50.0%
TCCACATCCAACAGGGGTCA+AGG + chr1_3:47961676-47961695 Msa0121820:CDS 55.0%
TCCTTGACCCCTGTTGGATG+TGG - chr1_3:47961680-47961699 None:intergenic 55.0%
ACATCCAACAGGGGTCAAGG+AGG + chr1_3:47961679-47961698 Msa0121820:CDS 55.0%
TGCATACCGGGCTAAGCTTG+AGG + chr1_3:47963905-47963924 Msa0121820:CDS 55.0%
ACTCGGCCTCAAGCTTAGCC+CGG - chr1_3:47963914-47963933 None:intergenic 60.0%
CCACTGAAGCAGGGCCACAG+AGG - chr1_3:47963059-47963078 None:intergenic 65.0%
CCTCTGTGGCCCTGCTTCAG+TGG + chr1_3:47963056-47963075 Msa0121820:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47960650 47964574 47960650 ID=Msa0121820;Name=Msa0121820
chr1_3 mRNA 47960650 47964574 47960650 ID=Msa0121820-mRNA-1;Parent=Msa0121820;Name=Msa0121820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=130|1|1|1|0.66|0.5|4|376|112
chr1_3 exon 47960650 47960778 47960650 ID=Msa0121820-mRNA-1:exon:14466;Parent=Msa0121820-mRNA-1
chr1_3 exon 47961669 47961763 47961669 ID=Msa0121820-mRNA-1:exon:14467;Parent=Msa0121820-mRNA-1
chr1_3 exon 47963853 47963953 47963853 ID=Msa0121820-mRNA-1:exon:14468;Parent=Msa0121820-mRNA-1
chr1_3 exon 47964055 47964574 47964055 ID=Msa0121820-mRNA-1:exon:14469;Parent=Msa0121820-mRNA-1
chr1_3 five_prime_UTR 47960650 47960778 47960650 ID=Msa0121820-mRNA-1:five_prime_utr;Parent=Msa0121820-mRNA-1
chr1_3 five_prime_UTR 47961669 47961669 47961669 ID=Msa0121820-mRNA-1:five_prime_utr;Parent=Msa0121820-mRNA-1
chr1_3 CDS 47961670 47961763 47961670 ID=Msa0121820-mRNA-1:cds;Parent=Msa0121820-mRNA-1
chr1_3 CDS 47963853 47963953 47963853 ID=Msa0121820-mRNA-1:cds;Parent=Msa0121820-mRNA-1
chr1_3 CDS 47964055 47964198 47964055 ID=Msa0121820-mRNA-1:cds;Parent=Msa0121820-mRNA-1
chr1_3 three_prime_UTR 47964199 47964574 47964199 ID=Msa0121820-mRNA-1:three_prime_utr;Parent=Msa0121820-mRNA-1
Gene Sequence

>Msa0121820

ATGGCATCCACATCCAACAGGGGTCAAGGAGGAATTCAGCAGTTGTTGGCAGCTGAACAAGAAGCACAACGGATTGTGAATGCTGCGAAAAATGAAAAATCGGCTAGGTTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATTGCTGCATACCGGGCTAAGCTTGAGGCCGAGTTTCAAAAGAAAGTGTCGGATAGTAGCGGTGATTCTGGCGCTAATGTCAAGCGACTTGACCAAGAAACTGAAGAAAAAATCCATCACCTGAAAACAGAGGCTGATAGAATTTCAGATGATGTCGTTGCCATGCTCCTTAAGCATGTAACAACTGTGAAAAAGTAG

Protein sequence

>Msa0121820

MASTSNRGQGGIQQLLAAEQEAQRIVNAAKNEKSARLKQAKEEAEKEIAAYRAKLEAEFQKKVSDSSGDSGANVKRLDQETEEKIHHLKTEADRISDDVVAMLLKHVTTVKK*