AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205390 MtrunA17_Chr4g0054421 98.524 271 3 1 1 270 1 271 0.0 550
Msa1205390 MtrunA17_Chr5g0400781 63.860 285 73 8 1 270 1 270 1.00e-102 300
Msa1205390 MtrunA17_Chr1g0175651 62.963 189 48 4 68 255 116 283 2.86e-72 223
Msa1205390 MtrunA17_Chr2g0308611 76.119 134 31 1 108 240 180 313 1.41e-67 213
Msa1205390 MtrunA17_Chr7g0258831 76.984 126 27 1 115 240 150 273 8.49e-66 207
Msa1205390 MtrunA17_Chr5g0399491 68.293 164 42 4 79 240 95 250 2.27e-65 206
Msa1205390 MtrunA17_Chr1g0151971 45.847 301 114 9 5 270 2 288 6.10e-65 204
Msa1205390 MtrunA17_Chr4g0055851 66.667 162 41 2 80 240 85 234 7.91e-65 204
Msa1205390 MtrunA17_Chr8g0335131 82.456 114 19 1 126 238 145 258 6.04e-62 197
Msa1205390 MtrunA17_Chr3g0135331 54.124 194 64 6 90 268 117 300 5.65e-50 166
Msa1205390 MtrunA17_Chr4g0044091 63.866 119 37 1 126 238 64 182 8.02e-49 160
Msa1205390 MtrunA17_Chr2g0299031 44.211 190 93 4 54 239 15 195 1.08e-39 137
Msa1205390 MtrunA17_Chr4g0071411 59.649 114 42 2 129 238 90 203 3.06e-35 125
Msa1205390 MtrunA17_Chr5g0416391 47.664 107 54 1 114 218 62 168 3.38e-21 90.5
Msa1205390 MtrunA17_Chr7g0265521 42.991 107 61 0 108 214 44 150 1.33e-20 87.8
Msa1205390 MtrunA17_Chr3g0119291 35.417 192 112 5 80 261 12 201 2.78e-20 87.4
Msa1205390 MtrunA17_Chr8g0362151 42.735 117 64 1 102 218 55 168 8.95e-20 86.7
Msa1205390 MtrunA17_Chr7g0217111 46.602 103 51 1 118 216 71 173 4.08e-19 84.3
Msa1205390 MtrunA17_Chr6g0450991 50.000 88 44 0 127 214 67 154 5.83e-19 84.3
Msa1205390 MtrunA17_Chr4g0060031 45.455 99 54 0 116 214 84 182 1.99e-17 80.9
Msa1205390 MtrunA17_Chr8g0381741 47.170 106 47 2 118 214 43 148 2.59e-17 80.1
Msa1205390 MtrunA17_Chr3g0123691 37.975 158 85 5 119 265 52 207 2.86e-17 79.7
Msa1205390 MtrunA17_Chr1g0179581 48.193 83 43 0 127 209 28 110 3.12e-17 75.5
Msa1205390 MtrunA17_Chr6g0453021 45.192 104 49 2 118 213 86 189 6.64e-17 78.6
Msa1205390 MtrunA17_Chr5g0415941 40.000 135 65 3 87 213 54 180 7.56e-17 79.0
Msa1205390 MtrunA17_Chr8g0362751 46.809 94 43 1 127 213 89 182 5.92e-16 75.9
Msa1205390 MtrunA17_Chr5g0403701 43.689 103 53 1 119 221 45 142 8.47e-13 65.9
Msa1205390 MtrunA17_Chr5g0403691 42.857 105 58 1 119 221 45 149 9.16e-13 65.9
Msa1205390 MtrunA17_Chr3g0127511 43.011 93 46 1 130 215 41 133 2.62e-12 65.1
Msa1205390 MtrunA17_Chr8g0346251 42.683 82 47 0 131 212 45 126 1.85e-11 62.8
Msa1205390 MtrunA17_Chr5g0410711 35.849 106 68 0 118 223 83 188 3.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205390 AT4G37790.1 61.806 288 82 9 1 270 1 278 2.61e-91 271
Msa1205390 AT2G22800.1 58.163 294 79 11 1 270 1 274 2.63e-83 251
Msa1205390 AT5G06710.1 61.376 189 56 4 76 254 136 317 4.99e-70 219
Msa1205390 AT5G47370.1 57.789 199 74 4 72 264 70 264 1.75e-66 208
Msa1205390 AT3G60390.1 60.656 183 57 6 69 238 94 274 1.22e-62 199
Msa1205390 AT4G17460.1 60.221 181 64 5 68 241 71 250 4.76e-62 197
Msa1205390 AT4G16780.1 75.194 129 30 2 112 239 115 242 2.00e-61 196
Msa1205390 AT2G44910.1 79.130 115 23 1 126 239 162 276 7.21e-59 190
Msa1205390 AT2G01430.1 54.676 139 56 2 106 239 113 249 2.42e-44 151
Msa1205390 AT1G70920.2 52.941 136 57 1 114 249 26 154 1.03e-40 139
Msa1205390 AT1G70920.1 56.349 126 48 1 114 239 56 174 1.19e-40 140
Msa1205390 AT5G06710.4 59.292 113 29 4 76 178 136 241 5.02e-30 114
Msa1205390 AT2G01430.2 50.526 95 40 2 106 195 113 205 1.12e-22 93.2
Msa1205390 AT1G69780.1 46.465 99 53 0 116 214 74 172 7.54e-20 87.4
Msa1205390 AT1G26960.1 41.964 112 65 0 119 230 63 174 2.21e-19 85.1
Msa1205390 AT5G03790.1 35.374 147 79 2 127 257 77 223 3.75e-18 81.6
Msa1205390 AT5G65310.1 45.000 100 48 1 122 214 67 166 1.60e-16 78.2
Msa1205390 AT3G01470.1 45.161 93 44 1 127 212 68 160 1.81e-16 77.4
Msa1205390 AT5G65310.2 45.000 100 48 1 122 214 49 148 1.98e-16 77.8
Msa1205390 AT2G18550.1 44.000 100 56 0 114 213 48 147 8.11e-16 74.7
Msa1205390 AT5G03790.2 47.253 91 48 0 127 217 77 167 9.71e-16 73.9
Msa1205390 AT5G15150.1 42.478 113 56 3 113 216 96 208 1.32e-15 75.9
Msa1205390 AT4G36740.2 44.681 94 52 0 120 213 49 142 2.40e-15 73.6
Msa1205390 AT4G36740.1 44.681 94 52 0 120 213 48 141 2.44e-15 73.6
Msa1205390 AT4G40060.1 44.330 97 47 1 125 214 57 153 2.55e-15 74.7
Msa1205390 AT3G01220.1 43.269 104 53 2 119 216 77 180 2.91e-15 74.3
Msa1205390 AT1G27045.4 46.875 96 44 1 127 215 68 163 4.78e-15 73.2
Msa1205390 AT1G27045.1 40.909 132 62 3 127 250 68 191 5.93e-15 72.4
Msa1205390 AT1G27045.2 57.576 66 28 0 127 192 17 82 8.87e-15 70.9
Msa1205390 AT1G27045.5 57.576 66 28 0 127 192 25 90 9.67e-15 71.2
Msa1205390 AT1G27045.3 57.576 66 28 0 127 192 25 90 9.67e-15 71.2
Msa1205390 AT2G36610.1 40.816 98 50 1 126 215 70 167 3.41e-14 69.7
Msa1205390 AT2G22430.1 43.750 96 50 1 125 216 60 155 7.56e-14 70.5
Msa1205390 AT2G46680.1 43.011 93 49 1 130 218 35 127 1.56e-13 68.9
Msa1205390 AT2G46680.2 41.111 90 53 0 130 219 35 124 1.57e-13 68.9
Msa1205390 AT5G06710.2 51.163 86 25 4 76 151 136 214 4.12e-12 64.7
Msa1205390 AT5G06710.3 51.163 86 25 4 76 151 136 214 4.12e-12 64.7
Msa1205390 AT3G61890.1 38.947 95 44 1 130 210 33 127 2.74e-11 62.4
Msa1205390 AT5G66700.1 44.872 78 43 0 115 192 59 136 6.59e-11 61.2
Msa1205390 AT1G79840.1 43.373 83 46 1 126 207 102 184 9.84e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGAGAAATTGCTCTTAT+TGG 0.187884 8_1:-61618108 None:intergenic
CTAGGTGGTGGTGGTGTTAA+TGG 0.243245 8_1:+61618077 Msa1205390:CDS
TCAGGCCTTCAACTTATTCT+AGG 0.257483 8_1:+61616843 Msa1205390:CDS
ATGTTTCACAACATTTCTTT+AGG 0.284664 8_1:-61617932 None:intergenic
AGAGAGAGAGATTGGTAATA+AGG 0.313031 8_1:-61616775 None:intergenic
GGTACCTGGCTCTACGGTTC+TGG 0.335278 8_1:-61617422 None:intergenic
TTATGATTACTTGAGGAATA+AGG 0.345806 8_1:-61616924 None:intergenic
AAGCATAGCAGATTGATCTT+TGG 0.351274 8_1:-61617204 None:intergenic
GGATGGTGGTGTGTCTTGTT+TGG 0.360529 8_1:-61616883 None:intergenic
TCTCTCTTGAGTTATCTTGA+TGG 0.382425 8_1:+61616791 Msa1205390:exon
CTCTCTTGAGTTATCTTGAT+GGG 0.399406 8_1:+61616792 Msa1205390:exon
TGTGAACTATGAAAGGGTTA+AGG 0.429954 8_1:+61618268 Msa1205390:three_prime_UTR
ATAACTCAAGAGAGAGAGAT+TGG 0.433571 8_1:-61616783 None:intergenic
TGTTAGCAGTGAATTAGAAA+TGG 0.445208 8_1:+61617094 Msa1205390:CDS
CACATGAAGGACACATAGTA+AGG 0.448920 8_1:-61618049 None:intergenic
AAGAGAAGAGAAGAAAGGTA+AGG 0.451793 8_1:-61616727 None:intergenic
AGGCTTTGTAACGTTGTTGT+TGG 0.454137 8_1:-61616904 None:intergenic
AATTTACAAACATAGAATAT+AGG 0.457840 8_1:-61618363 None:intergenic
GTGAACTATGAAAGGGTTAA+GGG 0.460344 8_1:+61618269 Msa1205390:three_prime_UTR
AAACATTAACAGAAGAGAAT+AGG 0.467293 8_1:+61617949 Msa1205390:CDS
AAGAAAGGTAAGGGAAGAGT+GGG 0.469487 8_1:-61616717 None:intergenic
GCTGAACCATCTTTAACGTT+GGG 0.469771 8_1:+61616957 Msa1205390:CDS
AAAGGAGGTGCAAGAATTGA+AGG 0.482533 8_1:+61617980 Msa1205390:CDS
AGCTGAACCATCTTTAACGT+TGG 0.482898 8_1:+61616956 Msa1205390:CDS
CTAAGCCTAGAATAAGTTGA+AGG 0.488952 8_1:-61616848 None:intergenic
GAAGAAAGGTAAGGGAAGAG+TGG 0.493787 8_1:-61616718 None:intergenic
TTGTTTCATCTTTCTCTAGT+GGG 0.496061 8_1:+61617051 Msa1205390:CDS
AAATGTATGTGAACTATGAA+AGG 0.497564 8_1:+61618261 Msa1205390:three_prime_UTR
TTCTTCATAGTAACTCTTGG+TGG 0.498912 8_1:-61616985 None:intergenic
AGGTGTTAGATTTAACTCTC+TGG 0.498987 8_1:-61617379 None:intergenic
TTCATCTTTCTCTAGTGGGA+GGG 0.505690 8_1:+61617055 Msa1205390:CDS
CACCTCGACAAGTTGAGGTC+TGG 0.514656 8_1:+61617397 Msa1205390:CDS
GTAAGGGTAGCTGCTGGCAT+AGG 0.516800 8_1:-61618032 None:intergenic
GTTGTTTCATCTTTCTCTAG+TGG 0.516924 8_1:+61617050 Msa1205390:CDS
AGGTTCTTCATAGTAACTCT+TGG 0.520099 8_1:-61616988 None:intergenic
AAGGGAAGAGAAGAGAAGAA+AGG 0.520574 8_1:-61616732 None:intergenic
GGTTCCAGAACCGTAGAGCC+AGG 0.526669 8_1:+61617418 Msa1205390:CDS
AATGTATGTGAACTATGAAA+GGG 0.527889 8_1:+61618262 Msa1205390:three_prime_UTR
TTTCATCTTTCTCTAGTGGG+AGG 0.528407 8_1:+61617054 Msa1205390:CDS
AGAGAAGAGAAGAAAGGTAA+GGG 0.528734 8_1:-61616726 None:intergenic
GTGAAGGGGTTGTAAAAGTG+AGG 0.536068 8_1:-61618131 None:intergenic
TTTGTAACGTTGTTGTTGGA+TGG 0.545023 8_1:-61616900 None:intergenic
GATAAACCCAACGTTAAAGA+TGG 0.545369 8_1:-61616963 None:intergenic
AGAGAATAGGAGGCTACAAA+AGG 0.550932 8_1:+61617962 Msa1205390:CDS
GTAAACATGGATCTATATGA+AGG 0.551801 8_1:+61618392 Msa1205390:three_prime_UTR
AGAAATGGAAACGACGGAGA+TGG 0.553541 8_1:+61617109 Msa1205390:CDS
TGCTGGCATAGGCATATACA+AGG 0.554332 8_1:-61618021 None:intergenic
TGTATAGGTACCTGGCTCTA+CGG 0.565795 8_1:-61617428 None:intergenic
AAAGCTGAAGCAAACAGAAG+TGG 0.566126 8_1:+61617899 Msa1205390:CDS
GTAAATTACTATAGTAAACA+TGG 0.567162 8_1:+61618379 Msa1205390:three_prime_UTR
TGTGAGAGACTAGGTGGTGG+TGG 0.571619 8_1:+61618068 Msa1205390:CDS
TCTAACACCTCGACAAGTTG+AGG 0.578186 8_1:+61617392 Msa1205390:CDS
CATTAACAGAAGAGAATAGG+AGG 0.587793 8_1:+61617952 Msa1205390:CDS
ATAGTTGTTATGATTACTTG+AGG 0.592747 8_1:-61616931 None:intergenic
AAGACGGTGCCACTGCAGCT+AGG 0.595899 8_1:+61617165 Msa1205390:CDS
CCACCTAGTCTCTCACATGA+AGG 0.597382 8_1:-61618062 None:intergenic
AAGCTTCTTCCTAGCTGCAG+TGG 0.601402 8_1:-61617174 None:intergenic
CACATAGTAAGGGTAGCTGC+TGG 0.601478 8_1:-61618038 None:intergenic
CAAGATGCTAGTAACAACTC+AGG 0.601537 8_1:+61616825 Msa1205390:CDS
GTAACGTTGTTGTTGGATGG+TGG 0.602624 8_1:-61616897 None:intergenic
GAATAGGAGGCTACAAAAGG+AGG 0.603538 8_1:+61617965 Msa1205390:CDS
GGTGGTGGTGGTGTTAATGG+TGG 0.605462 8_1:+61618080 Msa1205390:CDS
TGCTGCTGAAGAATTTGTGA+AGG 0.622725 8_1:-61618147 None:intergenic
AACCAGACCTCAACTTGTCG+AGG 0.626268 8_1:-61617399 None:intergenic
TGAATTAGAAATGGAAACGA+CGG 0.634393 8_1:+61617103 Msa1205390:CDS
GCTGCTGAAGAATTTGTGAA+GGG 0.658168 8_1:-61618146 None:intergenic
ACATGAAGGACACATAGTAA+GGG 0.658983 8_1:-61618048 None:intergenic
CCTTCATGTGAGAGACTAGG+TGG 0.665742 8_1:+61618062 Msa1205390:CDS
GATGAAACAACGCTGTGATG+AGG 0.669037 8_1:-61617038 None:intergenic
TCATGTGAGAGACTAGGTGG+TGG 0.669612 8_1:+61618065 Msa1205390:CDS
ATCAGCGATGAAGATGAAGA+CGG 0.672472 8_1:+61617149 Msa1205390:CDS
TGTCCTTCATGTGAGAGACT+AGG 0.681664 8_1:+61618059 Msa1205390:CDS
CTGCTGAAGAATTTGTGAAG+GGG 0.685286 8_1:-61618145 None:intergenic
GCTGGCATAGGCATATACAA+GGG 0.757470 8_1:-61618020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTGATAAATAAATG+AGG - chr8_1:61617325-61617344 None:intergenic 10.0%
!! TATTATCTTCAAATTAATTA+AGG + chr8_1:61617660-61617679 Msa1205390:intron 10.0%
!! ATTATCTTCAAATTAATTAA+GGG + chr8_1:61617661-61617680 Msa1205390:intron 10.0%
!!! TGTAATATTAAGATTATTTT+TGG + chr8_1:61617852-61617871 Msa1205390:intron 10.0%
!! AAAAATTTGATAAATAAATG+AGG - chr8_1:61617325-61617344 None:intergenic 10.0%
!! TATTATCTTCAAATTAATTA+AGG + chr8_1:61617660-61617679 Msa1205390:intron 10.0%
!! ATTATCTTCAAATTAATTAA+GGG + chr8_1:61617661-61617680 Msa1205390:intron 10.0%
!!! TGTAATATTAAGATTATTTT+TGG + chr8_1:61617852-61617871 Msa1205390:intron 10.0%
!!! TATTTATCAAATTTTTGTGA+TGG + chr8_1:61617329-61617348 Msa1205390:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG + chr8_1:61617482-61617501 Msa1205390:intron 15.0%
!! ATTTGAAGATAATATTTCAT+TGG - chr8_1:61617654-61617673 None:intergenic 15.0%
!! ATTTACAATAGTATATGTAT+TGG - chr8_1:61617710-61617729 None:intergenic 15.0%
!! AATACATATACTATTGTAAA+TGG + chr8_1:61617709-61617728 Msa1205390:intron 15.0%
!!! TATTAAGATTATTTTTGGTT+TGG + chr8_1:61617857-61617876 Msa1205390:intron 15.0%
!! AATTTACAAACATAGAATAT+AGG - chr8_1:61618366-61618385 None:intergenic 15.0%
!!! TATTTATCAAATTTTTGTGA+TGG + chr8_1:61617329-61617348 Msa1205390:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG + chr8_1:61617482-61617501 Msa1205390:intron 15.0%
!! ATTTGAAGATAATATTTCAT+TGG - chr8_1:61617654-61617673 None:intergenic 15.0%
!! ATTTACAATAGTATATGTAT+TGG - chr8_1:61617710-61617729 None:intergenic 15.0%
!! AATACATATACTATTGTAAA+TGG + chr8_1:61617709-61617728 Msa1205390:intron 15.0%
!!! TATTAAGATTATTTTTGGTT+TGG + chr8_1:61617857-61617876 Msa1205390:intron 15.0%
!! AATTTACAAACATAGAATAT+AGG - chr8_1:61618366-61618385 None:intergenic 15.0%
!! TTATGCATATATGTATGTAT+AGG - chr8_1:61617446-61617465 None:intergenic 20.0%
!!! TTTTCAATTGAAGTTATTCT+GGG - chr8_1:61617739-61617758 None:intergenic 20.0%
!!! TTTTTCAATTGAAGTTATTC+TGG - chr8_1:61617740-61617759 None:intergenic 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG + chr8_1:61617864-61617883 Msa1205390:intron 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG + chr8_1:61617865-61617884 Msa1205390:intron 20.0%
!!! TTTGTATTTTTTTGGTTGAA+GGG + chr8_1:61618238-61618257 Msa1205390:three_prime_UTR 20.0%
!! GTAAATTACTATAGTAAACA+TGG + chr8_1:61618379-61618398 Msa1205390:three_prime_UTR 20.0%
!! TTATGCATATATGTATGTAT+AGG - chr8_1:61617446-61617465 None:intergenic 20.0%
!!! TTTTCAATTGAAGTTATTCT+GGG - chr8_1:61617739-61617758 None:intergenic 20.0%
!!! TTTTTCAATTGAAGTTATTC+TGG - chr8_1:61617740-61617759 None:intergenic 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG + chr8_1:61617864-61617883 Msa1205390:intron 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG + chr8_1:61617865-61617884 Msa1205390:intron 20.0%
!!! TTTGTATTTTTTTGGTTGAA+GGG + chr8_1:61618238-61618257 Msa1205390:three_prime_UTR 20.0%
!! GTAAATTACTATAGTAAACA+TGG + chr8_1:61618379-61618398 Msa1205390:three_prime_UTR 20.0%
!!! TTTTTGTTTTGTGAAAGGAA+GGG - chr8_1:61616753-61616772 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG - chr8_1:61616927-61616946 None:intergenic 25.0%
! ATAGTTGTTATGATTACTTG+AGG - chr8_1:61616934-61616953 None:intergenic 25.0%
! GAGATTATGATTATGATTAC+AGG - chr8_1:61617263-61617282 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG + chr8_1:61617495-61617514 Msa1205390:intron 25.0%
! CCAATATGAAGATTATGTAA+TGG - chr8_1:61617530-61617549 None:intergenic 25.0%
! CCATTACATAATCTTCATAT+TGG + chr8_1:61617527-61617546 Msa1205390:intron 25.0%
! CATATACTATTGTAAATGGA+TGG + chr8_1:61617713-61617732 Msa1205390:intron 25.0%
!! TGTGTCGACAAAAAAAATTA+TGG + chr8_1:61617804-61617823 Msa1205390:intron 25.0%
!! GTGTCGACAAAAAAAATTAT+GGG + chr8_1:61617805-61617824 Msa1205390:intron 25.0%
! ATGTTTCACAACATTTCTTT+AGG - chr8_1:61617935-61617954 None:intergenic 25.0%
! AAACATTAACAGAAGAGAAT+AGG + chr8_1:61617949-61617968 Msa1205390:CDS 25.0%
! AAAAAATACAAAGGTTGTGT+GGG - chr8_1:61618230-61618249 None:intergenic 25.0%
! AAAAAAATACAAAGGTTGTG+TGG - chr8_1:61618231-61618250 None:intergenic 25.0%
!!! ACACAACCTTTGTATTTTTT+TGG + chr8_1:61618230-61618249 Msa1205390:three_prime_UTR 25.0%
! CTTCAACCAAAAAAATACAA+AGG - chr8_1:61618239-61618258 None:intergenic 25.0%
!!! CTTTGTATTTTTTTGGTTGA+AGG + chr8_1:61618237-61618256 Msa1205390:three_prime_UTR 25.0%
! AAATGTATGTGAACTATGAA+AGG + chr8_1:61618261-61618280 Msa1205390:three_prime_UTR 25.0%
! AATGTATGTGAACTATGAAA+GGG + chr8_1:61618262-61618281 Msa1205390:three_prime_UTR 25.0%
!!! TCAATTGTTCATTTTTGTTG+TGG + chr8_1:61618433-61618452 Msa1205390:three_prime_UTR 25.0%
!!! CAATTGTTCATTTTTGTTGT+GGG + chr8_1:61618434-61618453 Msa1205390:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTGAAAGGAA+GGG - chr8_1:61616753-61616772 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG - chr8_1:61616927-61616946 None:intergenic 25.0%
! ATAGTTGTTATGATTACTTG+AGG - chr8_1:61616934-61616953 None:intergenic 25.0%
! GAGATTATGATTATGATTAC+AGG - chr8_1:61617263-61617282 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG + chr8_1:61617495-61617514 Msa1205390:intron 25.0%
! CCAATATGAAGATTATGTAA+TGG - chr8_1:61617530-61617549 None:intergenic 25.0%
! CCATTACATAATCTTCATAT+TGG + chr8_1:61617527-61617546 Msa1205390:intron 25.0%
! CATATACTATTGTAAATGGA+TGG + chr8_1:61617713-61617732 Msa1205390:intron 25.0%
!! TGTGTCGACAAAAAAAATTA+TGG + chr8_1:61617804-61617823 Msa1205390:intron 25.0%
!! GTGTCGACAAAAAAAATTAT+GGG + chr8_1:61617805-61617824 Msa1205390:intron 25.0%
! ATGTTTCACAACATTTCTTT+AGG - chr8_1:61617935-61617954 None:intergenic 25.0%
! AAACATTAACAGAAGAGAAT+AGG + chr8_1:61617949-61617968 Msa1205390:CDS 25.0%
! AAAAAATACAAAGGTTGTGT+GGG - chr8_1:61618230-61618249 None:intergenic 25.0%
! AAAAAAATACAAAGGTTGTG+TGG - chr8_1:61618231-61618250 None:intergenic 25.0%
!!! ACACAACCTTTGTATTTTTT+TGG + chr8_1:61618230-61618249 Msa1205390:three_prime_UTR 25.0%
! CTTCAACCAAAAAAATACAA+AGG - chr8_1:61618239-61618258 None:intergenic 25.0%
!!! CTTTGTATTTTTTTGGTTGA+AGG + chr8_1:61618237-61618256 Msa1205390:three_prime_UTR 25.0%
! AAATGTATGTGAACTATGAA+AGG + chr8_1:61618261-61618280 Msa1205390:three_prime_UTR 25.0%
! AATGTATGTGAACTATGAAA+GGG + chr8_1:61618262-61618281 Msa1205390:three_prime_UTR 25.0%
!!! TCAATTGTTCATTTTTGTTG+TGG + chr8_1:61618433-61618452 Msa1205390:three_prime_UTR 25.0%
!!! GTTTTTGTTTTGTGAAAGGA+AGG - chr8_1:61616754-61616773 None:intergenic 30.0%
!!! AGGTGTTTTTGTTTTGTGAA+AGG - chr8_1:61616758-61616777 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG - chr8_1:61617011-61617030 None:intergenic 30.0%
TTGTTTCATCTTTCTCTAGT+GGG + chr8_1:61617051-61617070 Msa1205390:CDS 30.0%
TGTTAGCAGTGAATTAGAAA+TGG + chr8_1:61617094-61617113 Msa1205390:CDS 30.0%
TGAATTAGAAATGGAAACGA+CGG + chr8_1:61617103-61617122 Msa1205390:CDS 30.0%
TATATGTATGTATAGGTACC+TGG - chr8_1:61617439-61617458 None:intergenic 30.0%
!!! TGCGAATATAACTGTTTTTG+AGG - chr8_1:61617599-61617618 None:intergenic 30.0%
GGTGATATATGATATTTACG+TGG - chr8_1:61617689-61617708 None:intergenic 30.0%
CTTAGAGAAATTGCTCTTAT+TGG - chr8_1:61618111-61618130 None:intergenic 30.0%
GTAAACATGGATCTATATGA+AGG + chr8_1:61618392-61618411 Msa1205390:three_prime_UTR 30.0%
!!! GTTTTTGTTTTGTGAAAGGA+AGG - chr8_1:61616754-61616773 None:intergenic 30.0%
!!! AGGTGTTTTTGTTTTGTGAA+AGG - chr8_1:61616758-61616777 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG - chr8_1:61617011-61617030 None:intergenic 30.0%
TTGTTTCATCTTTCTCTAGT+GGG + chr8_1:61617051-61617070 Msa1205390:CDS 30.0%
TGTTAGCAGTGAATTAGAAA+TGG + chr8_1:61617094-61617113 Msa1205390:CDS 30.0%
TGAATTAGAAATGGAAACGA+CGG + chr8_1:61617103-61617122 Msa1205390:CDS 30.0%
TATATGTATGTATAGGTACC+TGG - chr8_1:61617439-61617458 None:intergenic 30.0%
!!! TGCGAATATAACTGTTTTTG+AGG - chr8_1:61617599-61617618 None:intergenic 30.0%
GGTGATATATGATATTTACG+TGG - chr8_1:61617689-61617708 None:intergenic 30.0%
CTTAGAGAAATTGCTCTTAT+TGG - chr8_1:61618111-61618130 None:intergenic 30.0%
GTAAACATGGATCTATATGA+AGG + chr8_1:61618392-61618411 Msa1205390:three_prime_UTR 30.0%
AGAGAAGAGAAGAAAGGTAA+GGG - chr8_1:61616729-61616748 None:intergenic 35.0%
AAGAGAAGAGAAGAAAGGTA+AGG - chr8_1:61616730-61616749 None:intergenic 35.0%
! AGAGAGAGAGATTGGTAATA+AGG - chr8_1:61616778-61616797 None:intergenic 35.0%
ATAACTCAAGAGAGAGAGAT+TGG - chr8_1:61616786-61616805 None:intergenic 35.0%
TCTCTCTTGAGTTATCTTGA+TGG + chr8_1:61616791-61616810 Msa1205390:exon 35.0%
CTCTCTTGAGTTATCTTGAT+GGG + chr8_1:61616792-61616811 Msa1205390:exon 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG - chr8_1:61616851-61616870 None:intergenic 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG - chr8_1:61616903-61616922 None:intergenic 35.0%
GATAAACCCAACGTTAAAGA+TGG - chr8_1:61616966-61616985 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG - chr8_1:61616988-61617007 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG - chr8_1:61616991-61617010 None:intergenic 35.0%
! GTTGTTTCATCTTTCTCTAG+TGG + chr8_1:61617050-61617069 Msa1205390:CDS 35.0%
AAGCATAGCAGATTGATCTT+TGG - chr8_1:61617207-61617226 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG - chr8_1:61617382-61617401 None:intergenic 35.0%
CATTAACAGAAGAGAATAGG+AGG + chr8_1:61617952-61617971 Msa1205390:CDS 35.0%
ACATGAAGGACACATAGTAA+GGG - chr8_1:61618051-61618070 None:intergenic 35.0%
TGTGAACTATGAAAGGGTTA+AGG + chr8_1:61618268-61618287 Msa1205390:three_prime_UTR 35.0%
GTGAACTATGAAAGGGTTAA+GGG + chr8_1:61618269-61618288 Msa1205390:three_prime_UTR 35.0%
AGAGAAGAGAAGAAAGGTAA+GGG - chr8_1:61616729-61616748 None:intergenic 35.0%
AAGAGAAGAGAAGAAAGGTA+AGG - chr8_1:61616730-61616749 None:intergenic 35.0%
! AGAGAGAGAGATTGGTAATA+AGG - chr8_1:61616778-61616797 None:intergenic 35.0%
ATAACTCAAGAGAGAGAGAT+TGG - chr8_1:61616786-61616805 None:intergenic 35.0%
TCTCTCTTGAGTTATCTTGA+TGG + chr8_1:61616791-61616810 Msa1205390:exon 35.0%
CTCTCTTGAGTTATCTTGAT+GGG + chr8_1:61616792-61616811 Msa1205390:exon 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG - chr8_1:61616851-61616870 None:intergenic 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG - chr8_1:61616903-61616922 None:intergenic 35.0%
GATAAACCCAACGTTAAAGA+TGG - chr8_1:61616966-61616985 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG - chr8_1:61616988-61617007 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG - chr8_1:61616991-61617010 None:intergenic 35.0%
! GTTGTTTCATCTTTCTCTAG+TGG + chr8_1:61617050-61617069 Msa1205390:CDS 35.0%
AAGCATAGCAGATTGATCTT+TGG - chr8_1:61617207-61617226 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG - chr8_1:61617382-61617401 None:intergenic 35.0%
CATTAACAGAAGAGAATAGG+AGG + chr8_1:61617952-61617971 Msa1205390:CDS 35.0%
ACATGAAGGACACATAGTAA+GGG - chr8_1:61618051-61618070 None:intergenic 35.0%
TGTGAACTATGAAAGGGTTA+AGG + chr8_1:61618268-61618287 Msa1205390:three_prime_UTR 35.0%
GTGAACTATGAAAGGGTTAA+GGG + chr8_1:61618269-61618288 Msa1205390:three_prime_UTR 35.0%
AAGGGAAGAGAAGAGAAGAA+AGG - chr8_1:61616735-61616754 None:intergenic 40.0%
CAAGATGCTAGTAACAACTC+AGG + chr8_1:61616825-61616844 Msa1205390:CDS 40.0%
TCAGGCCTTCAACTTATTCT+AGG + chr8_1:61616843-61616862 Msa1205390:CDS 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG - chr8_1:61616907-61616926 None:intergenic 40.0%
AGCTGAACCATCTTTAACGT+TGG + chr8_1:61616956-61616975 Msa1205390:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG + chr8_1:61616957-61616976 Msa1205390:CDS 40.0%
TTTCATCTTTCTCTAGTGGG+AGG + chr8_1:61617054-61617073 Msa1205390:CDS 40.0%
TTCATCTTTCTCTAGTGGGA+GGG + chr8_1:61617055-61617074 Msa1205390:CDS 40.0%
ATCAGCGATGAAGATGAAGA+CGG + chr8_1:61617149-61617168 Msa1205390:CDS 40.0%
GTACTTAAATTGCAGTACGC+AGG - chr8_1:61617626-61617645 None:intergenic 40.0%
AAAGCTGAAGCAAACAGAAG+TGG + chr8_1:61617899-61617918 Msa1205390:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG + chr8_1:61617962-61617981 Msa1205390:CDS 40.0%
! AAAGGAGGTGCAAGAATTGA+AGG + chr8_1:61617980-61617999 Msa1205390:CDS 40.0%
CACATGAAGGACACATAGTA+AGG - chr8_1:61618052-61618071 None:intergenic 40.0%
CTGCTGAAGAATTTGTGAAG+GGG - chr8_1:61618148-61618167 None:intergenic 40.0%
GCTGCTGAAGAATTTGTGAA+GGG - chr8_1:61618149-61618168 None:intergenic 40.0%
TGCTGCTGAAGAATTTGTGA+AGG - chr8_1:61618150-61618169 None:intergenic 40.0%
AAGGGAAGAGAAGAGAAGAA+AGG - chr8_1:61616735-61616754 None:intergenic 40.0%
CAAGATGCTAGTAACAACTC+AGG + chr8_1:61616825-61616844 Msa1205390:CDS 40.0%
TCAGGCCTTCAACTTATTCT+AGG + chr8_1:61616843-61616862 Msa1205390:CDS 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG - chr8_1:61616907-61616926 None:intergenic 40.0%
AGCTGAACCATCTTTAACGT+TGG + chr8_1:61616956-61616975 Msa1205390:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG + chr8_1:61616957-61616976 Msa1205390:CDS 40.0%
TTTCATCTTTCTCTAGTGGG+AGG + chr8_1:61617054-61617073 Msa1205390:CDS 40.0%
TTCATCTTTCTCTAGTGGGA+GGG + chr8_1:61617055-61617074 Msa1205390:CDS 40.0%
ATCAGCGATGAAGATGAAGA+CGG + chr8_1:61617149-61617168 Msa1205390:CDS 40.0%
GTACTTAAATTGCAGTACGC+AGG - chr8_1:61617626-61617645 None:intergenic 40.0%
AAAGCTGAAGCAAACAGAAG+TGG + chr8_1:61617899-61617918 Msa1205390:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG + chr8_1:61617962-61617981 Msa1205390:CDS 40.0%
! AAAGGAGGTGCAAGAATTGA+AGG + chr8_1:61617980-61617999 Msa1205390:CDS 40.0%
CACATGAAGGACACATAGTA+AGG - chr8_1:61618052-61618071 None:intergenic 40.0%
CTGCTGAAGAATTTGTGAAG+GGG - chr8_1:61618148-61618167 None:intergenic 40.0%
GCTGCTGAAGAATTTGTGAA+GGG - chr8_1:61618149-61618168 None:intergenic 40.0%
TGCTGCTGAAGAATTTGTGA+AGG - chr8_1:61618150-61618169 None:intergenic 40.0%
GAAGAAAGGTAAGGGAAGAG+TGG - chr8_1:61616721-61616740 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG - chr8_1:61616900-61616919 None:intergenic 45.0%
GATGAAACAACGCTGTGATG+AGG - chr8_1:61617041-61617060 None:intergenic 45.0%
AGAAATGGAAACGACGGAGA+TGG + chr8_1:61617109-61617128 Msa1205390:CDS 45.0%
TCTAACACCTCGACAAGTTG+AGG + chr8_1:61617392-61617411 Msa1205390:CDS 45.0%
!! TGTATAGGTACCTGGCTCTA+CGG - chr8_1:61617431-61617450 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG + chr8_1:61617965-61617984 Msa1205390:CDS 45.0%
GCTGGCATAGGCATATACAA+GGG - chr8_1:61618023-61618042 None:intergenic 45.0%
TGCTGGCATAGGCATATACA+AGG - chr8_1:61618024-61618043 None:intergenic 45.0%
TGTCCTTCATGTGAGAGACT+AGG + chr8_1:61618059-61618078 Msa1205390:CDS 45.0%
GTGAAGGGGTTGTAAAAGTG+AGG - chr8_1:61618134-61618153 None:intergenic 45.0%
GAAGAAAGGTAAGGGAAGAG+TGG - chr8_1:61616721-61616740 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG - chr8_1:61616900-61616919 None:intergenic 45.0%
GATGAAACAACGCTGTGATG+AGG - chr8_1:61617041-61617060 None:intergenic 45.0%
AGAAATGGAAACGACGGAGA+TGG + chr8_1:61617109-61617128 Msa1205390:CDS 45.0%
TCTAACACCTCGACAAGTTG+AGG + chr8_1:61617392-61617411 Msa1205390:CDS 45.0%
!! TGTATAGGTACCTGGCTCTA+CGG - chr8_1:61617431-61617450 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG + chr8_1:61617965-61617984 Msa1205390:CDS 45.0%
GCTGGCATAGGCATATACAA+GGG - chr8_1:61618023-61618042 None:intergenic 45.0%
TGCTGGCATAGGCATATACA+AGG - chr8_1:61618024-61618043 None:intergenic 45.0%
TGTCCTTCATGTGAGAGACT+AGG + chr8_1:61618059-61618078 Msa1205390:CDS 45.0%
GTGAAGGGGTTGTAAAAGTG+AGG - chr8_1:61618134-61618153 None:intergenic 45.0%
! GGATGGTGGTGTGTCTTGTT+TGG - chr8_1:61616886-61616905 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG - chr8_1:61617177-61617196 None:intergenic 50.0%
AACCAGACCTCAACTTGTCG+AGG - chr8_1:61617402-61617421 None:intergenic 50.0%
CACATAGTAAGGGTAGCTGC+TGG - chr8_1:61618041-61618060 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG - chr8_1:61618065-61618084 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG + chr8_1:61618062-61618081 Msa1205390:CDS 50.0%
TCATGTGAGAGACTAGGTGG+TGG + chr8_1:61618065-61618084 Msa1205390:CDS 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG + chr8_1:61618077-61618096 Msa1205390:CDS 50.0%
! GGATGGTGGTGTGTCTTGTT+TGG - chr8_1:61616886-61616905 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG - chr8_1:61617177-61617196 None:intergenic 50.0%
AACCAGACCTCAACTTGTCG+AGG - chr8_1:61617402-61617421 None:intergenic 50.0%
CACATAGTAAGGGTAGCTGC+TGG - chr8_1:61618041-61618060 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG - chr8_1:61618065-61618084 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG + chr8_1:61618062-61618081 Msa1205390:CDS 50.0%
TCATGTGAGAGACTAGGTGG+TGG + chr8_1:61618065-61618084 Msa1205390:CDS 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG + chr8_1:61618077-61618096 Msa1205390:CDS 50.0%
! CACCTCGACAAGTTGAGGTC+TGG + chr8_1:61617397-61617416 Msa1205390:CDS 55.0%
GTAAGGGTAGCTGCTGGCAT+AGG - chr8_1:61618035-61618054 None:intergenic 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG + chr8_1:61618068-61618087 Msa1205390:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG + chr8_1:61618080-61618099 Msa1205390:CDS 55.0%
! CACCTCGACAAGTTGAGGTC+TGG + chr8_1:61617397-61617416 Msa1205390:CDS 55.0%
GTAAGGGTAGCTGCTGGCAT+AGG - chr8_1:61618035-61618054 None:intergenic 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG + chr8_1:61618068-61618087 Msa1205390:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG + chr8_1:61618080-61618099 Msa1205390:CDS 55.0%
!! AAGACGGTGCCACTGCAGCT+AGG + chr8_1:61617165-61617184 Msa1205390:CDS 60.0%
GGTTCCAGAACCGTAGAGCC+AGG + chr8_1:61617418-61617437 Msa1205390:CDS 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG - chr8_1:61617425-61617444 None:intergenic 60.0%
!! AAGACGGTGCCACTGCAGCT+AGG + chr8_1:61617165-61617184 Msa1205390:CDS 60.0%
GGTTCCAGAACCGTAGAGCC+AGG + chr8_1:61617418-61617437 Msa1205390:CDS 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG - chr8_1:61617425-61617444 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61616718 61618456 61616718 ID=Msa1205390;Name=Msa1205390
chr8_1 mRNA 61616718 61618456 61616718 ID=Msa1205390-mRNA-1;Parent=Msa1205390;Name=Msa1205390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=92|1|1|1|1|1|3|281|270
chr8_1 exon 61616718 61617262 61616718 ID=Msa1205390-mRNA-1:exon:20011;Parent=Msa1205390-mRNA-1
chr8_1 exon 61617360 61617439 61617360 ID=Msa1205390-mRNA-1:exon:20012;Parent=Msa1205390-mRNA-1
chr8_1 exon 61617896 61618456 61617896 ID=Msa1205390-mRNA-1:exon:20013;Parent=Msa1205390-mRNA-1
chr8_1 five_prime_UTR 61616718 61616809 61616718 ID=Msa1205390-mRNA-1:five_prime_utr;Parent=Msa1205390-mRNA-1
chr8_1 CDS 61616810 61617262 61616810 ID=Msa1205390-mRNA-1:cds;Parent=Msa1205390-mRNA-1
chr8_1 CDS 61617360 61617439 61617360 ID=Msa1205390-mRNA-1:cds;Parent=Msa1205390-mRNA-1
chr8_1 CDS 61617896 61618175 61617896 ID=Msa1205390-mRNA-1:cds;Parent=Msa1205390-mRNA-1
chr8_1 three_prime_UTR 61618176 61618456 61618176 ID=Msa1205390-mRNA-1:three_prime_utr;Parent=Msa1205390-mRNA-1
Gene Sequence

>Msa1205390

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCATCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGATGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGTTTCAAAGAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTGAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCAGCAGCTACCCTTACTATGTGTCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAACCCCTTCACAAATTCTTCAGCAGCATGTTGA

Protein sequence

>Msa1205390

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC*